Psyllid ID: psy16852

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
Protein Sequence
MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI
Secondary Structure (PSIPRED)
cccccccEEEEccccEEEcccccEEEEEEEEEEcccEEEEEEccEEEcccccEEEEEEccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEEcccccccEEEEccccEEEEccccEEEEEEEEcccccEEEEEEccEEcccccccEEEEEccccEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEEcccccccccccccEEEEccccEEEcccccEEEEEEEEcccccEEEEEEccEEcccccEEEEccEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEccccccccccEEEccccEEEEEEEEEEEEEEEEEEcccEEEEEEccEEccccccEEEEEccccEEEEEEccccccccEEEEEEEEcccEEEEEEEEEEEEEccccccccEEEEccccEEEEccccEEEEEEEEcccccEEEEEEccEEEcccccEEEEEcccccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEEEccccccccEEEEEEEccccEEEEEEEEEEEEcccccccccccEEEEcccEEEEEcccEEEEEEEEEcccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccEEEcccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEcccccEEEEEcccEEEEEEEEcccccccEEEEEEEEccccccEEEEEEEEcccccccccccccccccEEEEcccEEEEEEEcccccccEEEEEEccEEEEccccEEEEEEEcccEEEEEEccccHHHcEEEEEEEEEccEEEEEEEEEEEEcccccccccccccccEEcccccEEEEcccEEEEEEEEccccccEEEEEEccEEcccccEEEEccEEEEEEEcccccccEEEEEEEEEccccccccEEEEEEcccccccccccccccccEEEEEccEEEEEccEEEEcccEEEEEEccEEccccccEEEEEccccEEEEEEccccHHHcEEEEEEEEEccEEEEEEEEEEEEcccccccccccccccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEcccccEEEEEEccccEEEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEEcccccccccEEEEEEEEEcccccccEEEEEEEccccccccccccEEEcccccEEEEcccEEEEEEEEEcccccEEEEc
Coil and Loop (DISEMBL)
maevlaprfiekiqpvvshqeqpalftckveghplptmtwqkdgtelhaTEHYLITTVESVstleiinptkedigvytckatniggvatCSANLIVLekeesgeapkftkplkpviaeaqspatlkatvtgrptpsicwyrgkeeilpdnghtmefnpttgecvlsiseatpqdeavYSVKAVNTFGRAECRANLVLrkattidkprvleaptivrplqallvpkdstvtleaeytgtptpevkwfkngkEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVneageartsgsVTITVAEAETVMMDVrveshptasfqwfihsepvvvtgkptplvtwshdgtpmkegkevtiyqdtDGLCKLAIsevfpenaglysctavnpvGEAVAAATLAVeekeesgeapkftkplkpviaeaqspatlkatvtgrptpsicwyrgkeeilpdnghtmefnpttgecvlsiseatpqdeavySVKAsstetkimtdgnrSVLLISKItrdqigdvtcraenvagsvtctatlsllpesevtdvmesprfiktpetakvmdgqsVLFTAqvgyserleipli
Flexible Loop (DISEMBL)
maevlaprfiekiqpvvshqEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEaqspatlkatvtgrptpsicwyrGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLvlrkattidkprvleaptivrplqallvpkdstvtleaeytgtptpevkwfknGKEIvskdietkdnvtklvikqttkkttgkyeirvvneageartsgsvtITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVtwshdgtpmkeGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVeekeesgeapkftkplkpVIAEaqspatlkatvtgrptpsicwyrGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKasstetkimtdgnrsvlLISKITRDQIGDVTCRAenvagsvtctatlsllpesevtdvmesPRFIKTpetakvmdgqsvlftaqvgyserleipli
Low Complexity Region (SEG)
MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPvgeavaaatlaveekeeSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI
Disordered region (IsUnstruct)
*******RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE*****************************TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLA*********************************VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSI*********************IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDV*****FI******KVMDGQSVLFTAQVGY*********
Disordered Region (DISOPRED)
MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTI*****LE***IVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET************ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE*****IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP*NG*****NPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI
Disordered Region (DISEMBL)
MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATL*************FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI
Disordered Region (DISPRO)
**EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	579	2.2.26 [Sep-21-2011]
Q9I7U4	18141	Titin OS=Drosophila melan	yes	N/A	0.839	0.026	0.352	1e-74
O01761	8081	Muscle M-line assembly pr	no	N/A	0.811	0.058	0.305	1e-47
Q8WZ42	34350	Titin OS=Homo sapiens GN=	yes	N/A	0.834	0.014	0.261	4e-37
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.865	0.014	0.250	4e-36
Q15772	3267	Striated muscle preferent	no	N/A	0.735	0.130	0.263	2e-33
Q62407	3262	Striated muscle-specific	no	N/A	0.740	0.131	0.263	3e-31
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.728	0.082	0.268	6e-31
Q15746	1914	Myosin light chain kinase	no	N/A	0.659	0.199	0.285	4e-30
P11799	1906	Myosin light chain kinase	no	N/A	0.652	0.198	0.281	4e-30
Q63638	3259	Striated muscle-specific	no	N/A	0.735	0.130	0.256	8e-30

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3

 Score =  281 bits (719), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 193/547 (35%), Positives = 279/547 (51%), Gaps = 61/547 (11%)

Query: 7    PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
            PR  EK++P     E+P +  CKVEG P P + W  +   L A+E Y IT +E V+ L+I
Sbjct: 6536 PRITEKLRPRQCVPEEPTVLECKVEGVPFPEIKWYFNDILLFASEKYEITVMEQVAKLKI 6595

Query: 67   INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLK 126
               T  D+GVYTC+A N  GVAT   N I+LEKE+ G  P+FTKPLK    E + P  LK
Sbjct: 6596 AKVTPSDVGVYTCEAKNEAGVATSRTN-IILEKEQ-GVPPQFTKPLKIEFIEEKQPERLK 6653

Query: 127  AT----VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
             T    VTG+P P + WYRG EE++P     M ++  TG+  L +   TP +  VYSV+A
Sbjct: 6654 VTVTCQVTGKPNPEVKWYRGIEEVIPSETVQMFYDEKTGDVALEVINPTPNEAVVYSVQA 6713

Query: 183  VNTFGRAECRANLVLRKATTIDK-PR-VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT 240
             N FGRA   AN++ R    +D+ PR +L+APT+  PL A++VP   T+  EA+Y G P 
Sbjct: 6714 QNQFGRAIGNANILSR----VDEVPREILKAPTVT-PLSAVVVPTGGTLFFEAKYDGLPR 6768

Query: 241  PEVKWFKNGKEIVSKDIETKDNVTKLV---IKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
            PEVKW +NG+EI+  +    +         +   T+K TGKYE+   N+ GEA++SGSV 
Sbjct: 6769 PEVKWMRNGREIIENEETIIETTETTTTIKVVNMTRKRTGKYEVWAKNKVGEAKSSGSVV 6828

Query: 298  IT---------------------VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT 336
            ++                       E E  +++  VES P +SFQWF+H+EP+       
Sbjct: 6829 VSDQKPDEQIKPPRFIQPLEPKYFGEHEVAIIEAIVESEPLSSFQWFVHNEPI------- 6881

Query: 337  PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATL 396
                        K   EV I    +    L I     +  G ++C A N  G   + AT+
Sbjct: 6882 ------------KSSNEVRIVSQANK-STLLIENFQSKFVGPFTCRAENVGGSVTSTATV 6928

Query: 397  AV--EEKEESGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG 453
             +  +E+ E  E+P+F + L +PV         L   VTG+PTP + WY   E+I  +N 
Sbjct: 6929 NLIPQEEAEEFESPRFVEELVQPVEVMDGEALLLTCQVTGKPTPKVEWYHNAEKIT-ENK 6987

Query: 454  HTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDV 513
             T       G C L I+E  P++E  Y   A++   K ++  N  +     I   +I  +
Sbjct: 6988 ETTISQDLQGVCQLQITEVFPENEGQYECVATNKIGKSVSKTNVKIQAFEYIPDSEITGL 7047

Query: 514  TCRAENV 520
            T   E++
Sbjct: 7048 TGSEEDL 7054

Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.
Drosophila melanogaster (taxid: 7227)

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 163/534 (30%), Positives = 233/534 (43%), Gaps = 64/534 (11%)

Query: 22   QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTLEIINPTKEDIGVYTCK 80
            QP   +CKV+  P  ++ W KDG  L A     I   E   +TL I + T+EDIG Y C 
Sbjct: 5398 QPIRLSCKVDAIPRASVVWYKDGLPLRADSRTSIQYEEDGTATLAINDSTEEDIGAYRCV 5457

Query: 81   ATNIGGV--ATCSANLIVLEKE--ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS 136
            ATN  G    +CS N+ V ++E  + GE P FTK L  + A+     TLK  VTG P P 
Sbjct: 5458 ATNAHGTINTSCSVNVKVPKQEVKKEGEEPFFTKGLVDLWADRGDSFTLKCAVTGDPFPE 5517

Query: 137  ICWYRGKEEILPDNGHTMEFNPTT-------GECVLSISEATPQDEAVYSVKAVNTFGRA 189
            I WYR        NG  +   P T       G C L+++E+T  DE +Y  +A N  G+A
Sbjct: 5518 IKWYR--------NGQLLRNGPRTVIETSPDGSCSLTVNESTMSDEGIYRCEAENAHGKA 5569

Query: 190  ECRANLVLRKAT-TIDKPRVLEA--PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWF 246
            + +A   ++ A    +KP++ E   P  +  L  + V   + + LE + TG P P VKW 
Sbjct: 5570 KTQATAHVQMALGKTEKPKMDEGKPPKFILELSDMSVSLGNVIDLECKVTGLPNPSVKWS 5629

Query: 247  KNGKEIVSKDI-----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART--------- 292
            K+G  ++         E    V +L IK  T    G Y     NE G A T         
Sbjct: 5630 KDGGPLIEDSRFEWSNEASKGVYQLRIKNATVHDEGTYRCVATNENGSATTKSFVRMDDG 5689

Query: 293  --SGSVTITVAEAETVMM-DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK 349
              SG VT +     T+ M DVR         +  + + P+       P + W  DG  + 
Sbjct: 5690 LGSGVVTASQPPRFTLKMGDVRTTEGQPLKLECKVDASPL-------PEMVWYKDGAIVT 5742

Query: 350  EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE-KEESG--- 405
                + I    DG+  L I     ++ G+Y   A NP G A    T  V++   +SG   
Sbjct: 5743 PSDRIQISLSPDGVATLLIPSCVYDDDGIYRVIATNPSGTAQDKGTATVKKLPRDSGARR 5802

Query: 406  ----------EAPKFTKPLKPV-IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGH 454
                      +APK  +PL+ + I E QS   L+   +G P P+I W++  E + P  G 
Sbjct: 5803 SADRDVFDANKAPKLMEPLENIRIPEKQS-FRLRCKFSGDPKPTIKWFKDGERVFP-YGR 5860

Query: 455  TMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
                    G C L +  AT QD   Y   A +T     T  + +V+   +  RD
Sbjct: 5861 LQLIESPDGVCELVVDSATRQDAGGYRCVAENTYGSARTSCDVNVIRGDRKPRD 5914

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score =  156 bits (395), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 150/573 (26%), Positives = 237/573 (41%), Gaps = 90/573 (15%)

Query: 7    PRFIEKIQPV-VSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            PRFI+K++P  +  Q++   + CK+ G P   + W KD TE+  +  + ++ V+SV+ LE
Sbjct: 8232 PRFIKKLEPSRIVKQDEFTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVDSVAVLE 8291

Query: 66   IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
            + N + ED G YTC+A N  G A+ S +L V       E P F K   P+     +   L
Sbjct: 8292 MHNLSVEDSGDYTCEAHNAAGSASSSTSLKV------KEPPIFRKKPHPIETLKGADVHL 8345

Query: 126  KATVTGRPTPSICWYRGKEEILPDNGHT-MEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
            +  + G P   + WY+ K E+     +  M  N  T   +L++  A   D   Y  KA N
Sbjct: 8346 ECELQGTPPFHVSWYKDKRELRSGKKYKIMSENFLTSIHILNVDAA---DIGEYQCKATN 8402

Query: 185  TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
              G   C  ++ L+             P  V+ L  +       V L+    G     V 
Sbjct: 8403 DVGSDTCVGSIALKAP-----------PRFVKKLSDISTVVGKEVQLQTTIEGAEPISVV 8451

Query: 245  WFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
            WFK+  EIV +     I   +N+  L   +      GKY  ++ N+AG        T++V
Sbjct: 8452 WFKDKGEIVRESDNIWISYSENIATLQFSRVEPANAGKYTCQIKNDAGMQECFA--TLSV 8509

Query: 301  AEAETVMM---DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE--VT 355
             E  T++     ++V +  T + +         V G P     W  DG  +    +  ++
Sbjct: 8510 LEPATIVEKPESIKVTTGDTCTLE-------CTVAGTPELSTKWFKDGKELTSDNKYKIS 8562

Query: 356  IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK 415
             +    GL    I  V P ++G+YS    NPVG+    A+L V ++      P FT+ LK
Sbjct: 8563 FFNKVSGL---KIINVAPSDSGVYSFEVQNPVGKDSCTASLQVSDRTV---PPSFTRKLK 8616

Query: 416  PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 475
                 + S   ++  V G P  S+ W+    EI   +G   +   T   C L+++     
Sbjct: 8617 ETNGLSGSSVVMECKVYGSPPISVSWFHEGNEI--SSGRKYQTTLTDNTCALTVNMLEES 8674

Query: 476  DEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPE 535
            D                                  GD TC A N+AGS  C+A L+    
Sbjct: 8675 DS---------------------------------GDYTCIATNMAGSDECSAPLT---- 8697

Query: 536  SEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
                 V E P F++ P+   V+ G +V FT+ V
Sbjct: 8698 -----VREPPSFVQKPDPMDVLTGTNVTFTSIV 8725

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score =  153 bits (386), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 144/575 (25%), Positives = 237/575 (41%), Gaps = 74/575 (12%)

Query: 9    FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIIN 68
            F++++      + +P +      G P  ++TW+K+G  + A++   ITT E  + LEI++
Sbjct: 8758 FVKRLNDYSIEKGKPLILEGTFSGTPPISVTWKKNGINVIASQRCNITTTEKSAILEILS 8817

Query: 69   PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT 128
             T ED G Y C   N  G  +CSA +++LE       P F K L+PV       A+L+  
Sbjct: 8818 STVEDSGQYNCYIENASGKDSCSAQILILE------PPYFVKQLEPVKVTVGDSASLQCQ 8871

Query: 129  VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
            + G P   + WY+G  ++ P     M F       V +  +++  D   Y  +A N+ G 
Sbjct: 8872 LAGTPEIGVSWYKGDTKLRPTATCKMHFKNNVATLVFTQVDSS--DSGEYICRAENSVGE 8929

Query: 189  AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKN 248
                  L +++            P+  R L+ +       V  E   +G+    V W+K+
Sbjct: 8930 VSSSTFLTVQEQKL--------PPSFSRQLRDVQETVGLPVVFECAVSGSEPISVSWYKD 8981

Query: 249  GKEIV-SKDIETK--DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
            GK +  S +I+T   DN+  L I +T +  +G+Y     N  G A +SG+  I       
Sbjct: 8982 GKPLKDSPNIQTSFLDNIATLNIFKTDRSLSGQYSCTATNPIGSA-SSGAKLILTEGKNP 9040

Query: 306  VMMDVRVESHPTASFQWFIHSEPVV---VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG 362
               D+     P A     +     +   VTG     VTW+ D   ++ G    I    + 
Sbjct: 9041 PFFDI-----PLAPMDAVVGESADLECHVTGTQPIKVTWAKDNREIRSGGNYQISY-LEN 9094

Query: 363  LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ 422
               L I +V   ++G Y+C AVN VG+    A L ++E+      P FTK L   + E +
Sbjct: 9095 SAHLTIVKVDKGDSGQYTCYAVNEVGKDSCTAQLNIKERLI---PPSFTKKLSETVEETE 9151

Query: 423  SPA-TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
              +  L+  V G    ++ WY+   EI P           T  C                
Sbjct: 9152 GNSFKLEGRVAGSQPITVAWYKNNVEIHP-----------TSNC---------------- 9184

Query: 482  VKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDV 541
                    +IM   N  +L + + +    G  TC+A N AGS  CT+++       + + 
Sbjct: 9185 --------EIMFKNNALLLQVKRASMADAGLYTCKATNDAGSALCTSSIV------IKEP 9230

Query: 542  MESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
             + P F +        +G SV  +  V  SE + I
Sbjct: 9231 KKPPVFDQHLAPVTASEGDSVQLSCHVQGSEPIRI 9265

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q15772|SPEG_HUMAN Striated muscle preferentially expressed protein kinase OS=Homo sapiens GN=SPEG PE=1 SV=4

 Score =  144 bits (363), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 141/535 (26%), Positives = 210/535 (39%), Gaps = 109/535 (20%)

Query: 6    APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            AP F   +Q VV       L  C +  +P P ++W KDG+ L +    L+       TL 
Sbjct: 721  APVFEIPLQNVVVAPGADVLLKCIITANPPPQVSWHKDGSALRSEGRLLLRAEGERHTLL 780

Query: 66   IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKP-------------- 111
            +      D G Y   ATN  G ATC+A+L V      G    F+ P              
Sbjct: 781  LREARAADAGSYMATATNELGQATCAASLTV---RPGGSTSPFSSPITSDEEYLSPPEEF 837

Query: 112  ------------LKPVIAE--------AQSPATLKAT-----------------VTGRPT 134
                        +KP  ++        +++P T K +                 V G P 
Sbjct: 838  PEPGETWPRTPTMKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPK 897

Query: 135  PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRAN 194
            P + W R ++ + PD     E     G C L I  A   D   Y+ KAVN +G  +C A 
Sbjct: 898  PVVSWLRNRQPVRPDQRRFAE-EAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEAR 956

Query: 195  LVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS 254
            L +R      + R L    ++ PLQ + V        E    G    EV W   G+ +  
Sbjct: 957  LEVRAHP---ESRSL---AVLAPLQDVDVGAGEMALFECLVAGPTDVEVDWLCRGRLLQP 1010

Query: 255  KDIETKDNVT----KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE---TVM 307
              ++ K +      KL++    +  +G Y  ++     E   S  +T+  + A     ++
Sbjct: 1011 ALLKCKMHFDGRKCKLLLTSVHEDDSGVYTCKLSTAKDELTCSARLTVRPSLAPLFTRLL 1070

Query: 308  MDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLA 367
             DV V     A F          ++G P P+VTW+H G PM+E + + + QD  GL  L 
Sbjct: 1071 EDVEVLEGRAARFD-------CKISGTPPPVVTWTHFGCPMEESENLRLRQD-GGLHSLH 1122

Query: 368  ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE--------------------ESGEA 407
            I+ V  E+ GLY+ +AVN  G+A  +A L VEE                      E GE 
Sbjct: 1123 IAHVGSEDEGLYAVSAVNTHGQAHCSAQLYVEEPRTAASGPSSKLEKMPSIPEEPEQGEL 1182

Query: 408  -----PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTME 457
                 P F +PL+ +       A L+  VTG P P+I W+         NGH ++
Sbjct: 1183 ERLSIPDFLRPLQDLEVGLAKEAMLECQVTGLPYPTISWF--------HNGHRIQ 1229

Isoform 3 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q62407|SPEG_MOUSE Striated muscle-specific serine/threonine-protein kinase OS=Mus musculus GN=Speg PE=1 SV=2

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 140/532 (26%), Positives = 207/532 (38%), Gaps = 103/532 (19%)

Query: 6    APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            AP F   +Q +V       L  C +  +P P ++W+KDG+ LH+    LI       TL 
Sbjct: 726  APVFEIPLQNMVVAPGADVLLKCIITANPPPQVSWKKDGSMLHSEGRLLIRAEGERHTLL 785

Query: 66   IINPTKEDIGVYTCKATNIGGVATCSANLIV-------------------LEKEESGEAP 106
            +      D G YT  ATN  G ATC+++L V                   L   E    P
Sbjct: 786  LREAQAADAGSYTATATNELGQATCASSLAVRPGGSTSPFSSPITSDEEYLSPPEEFPEP 845

Query: 107  KFTKPLKPVI------------AEAQSPATLKAT-----------------VTGRPTPSI 137
              T P  P +            + +++P T K +                 V G P P +
Sbjct: 846  GETWPRTPTMKLSPSQDHDSSDSSSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVV 905

Query: 138  CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
             W R ++ + PD     E     G C L I  A   D   Y+ KAVN +G  +C A L +
Sbjct: 906  SWLRNRQPVRPDQRRFAE-EAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 964

Query: 198  RKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI 257
            R      + R L    ++ PLQ + V        E    G    EV W   G+ +    +
Sbjct: 965  RAHP---ESRSL---AVLAPLQDVDVGAGEMALFECLVAGPADVEVDWLCRGRLLQPALL 1018

Query: 258  ETKDNVT----KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE---TVMMDV 310
            + K +      KL++    +  +G Y  ++     E   S  +T+  + A     ++ DV
Sbjct: 1019 KCKMHFDGRKCKLLLTSVHEDDSGVYTCKLSTAKDELTCSARLTVRPSLAPLFTRLLEDV 1078

Query: 311  RVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISE 370
             V     A            ++G P P VTW+H G P+ EG  + + QD  GL  L I+ 
Sbjct: 1079 EVLEGRAARLD-------CKISGTPPPSVTWTHFGHPVNEGDNLRLRQD-GGLHSLHIAR 1130

Query: 371  VFPENAGLYSCTAVNPVGEAVAAATLAVEEKE--------------------ESGEA--- 407
            V  E+ GLY  +A N  G+A  +A L VEE                      E G+    
Sbjct: 1131 VGSEDEGLYEVSATNTHGQAHCSAQLYVEEPRTAASGPSSKLEKMPSIPEEPEHGDLERL 1190

Query: 408  --PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTME 457
              P F +PL+ +       A L+  VTG P P+I W+         NGH ++
Sbjct: 1191 SIPDFLRPLQDLEVGLAKEAMLECQVTGLPYPTISWF--------HNGHRIQ 1234

Isoform 3 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score =  135 bits (341), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 200/470 (42%), Gaps = 48/470 (10%)

Query: 24   ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-TLEIINPTKEDIGVYTCKAT 82
            A+  C   G P P + W + G E+      ++   +S S TL I    + D G+YTCKA 
Sbjct: 716  AVLLCAASGVPPPRVIWYRGGLEV------ILAPGDSRSGTLRIPEAQERDAGLYTCKAV 769

Query: 83   NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 142
            N  G A+    L+V      G AP+ T P + V  E      L    TGRP P + W RG
Sbjct: 770  NELGDASAEIQLVV------GNAPRLTDPPQDVTVELGKSVFLTCRATGRPPPIVTWRRG 823

Query: 143  KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT 202
              + L     +      +G  VL     + +D+A Y  +A N FG+A+  A LV+   T 
Sbjct: 824  DGQALEPGRGSRTGQRDSG--VLVFERVSLEDQAPYVCEARNVFGKAQAEARLVV---TG 878

Query: 203  IDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN 262
               P++  + ++VR L+    P   T  + A   G P PE +W K G  +   +      
Sbjct: 879  HAPPQIANSASVVRVLEGQ--PVSLTCVILA---GRPLPERRWLKAGSPLPPGNRHAVRA 933

Query: 263  VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF-- 320
               L + +  ++  G+Y     N AG       + + V          R+  HPT++   
Sbjct: 934  DGSLHLDRALQEDAGRYSCVATNVAGSQHRDVELVVQVPP--------RI--HPTSTHHV 983

Query: 321  --QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
              +    S P + +G PTP +TW+ +   +      ++ ++      L I +  P++AG 
Sbjct: 984  TNEGVPASLPCIASGVPTPKITWTKETNALTTSGHYSVSRNG----TLVIVQPSPQDAGA 1039

Query: 379  YSCTAVNPVGEAVAAATLAVEEKE--ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT 436
            Y CTA N VG +     L+V  K   +   +     PL+ V  +A    TL     G PT
Sbjct: 1040 YVCTATNSVGFSSQEMWLSVNTKPMIKMNGSQAVDVPLR-VTVKAGEEVTLDCEAQGSPT 1098

Query: 437  PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
            P + W +    +LP   +  E  P+     L +++A   D  +Y   AS+
Sbjct: 1099 PLLTWTKDANPLLPVT-NRYELLPSGS---LRLAQAQVGDNGLYGCTASN 1144

Mus musculus (taxid: 10090)

>sp|Q15746|MYLK_HUMAN Myosin light chain kinase, smooth muscle OS=Homo sapiens GN=MYLK PE=1 SV=4

 Score =  133 bits (334), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 173/410 (42%), Gaps = 28/410 (6%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-TLE 65
           P+F  K Q     + Q   F C+V G P P + W  +GT +   E  +    ++ S  L 
Sbjct: 414 PKFESKPQSQEVKENQTVKFRCEVSGIPKPEVAWFLEGTPVRRQEGSIEVYEDAGSHYLC 473

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
           ++     D G Y+C A+N  G  +CS  L V        AP F+  LK           L
Sbjct: 474 LLKARTRDSGTYSCTASNAQGQLSCSWTLQVERLAVMEVAPSFSSVLKDCAVIEGQDFVL 533

Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT---GECVLSISEATPQDEAVYSVKA 182
           + +V G P P I W          NG  +++  +T   G   L I +A P+D   Y+  A
Sbjct: 534 QCSVRGTPVPRITWLL--------NGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLA 585

Query: 183 VNTFGRAECRANLVLRKATTIDKPRVL--------EAPTIVRPLQALLVPKDSTVTLEAE 234
            N  G+  C A + + +  +  K   L         AP  ++ L  L V   S VT+  +
Sbjct: 586 ENALGQVSCSAWVTVHEKKSSRKSEYLLPVAPSKPTAPIFLQGLSDLKVMDGSQVTMTVQ 645

Query: 235 YTGTPTPEVKWFKNGKEIV-SKDIETKDNVTK--LVIKQTTKKTTGKYEIRVVNEAGEAR 291
            +G P PEV W  NG EI  S+D   +   T+  L I++   + TG Y     N AGE R
Sbjct: 646 VSGNPPPEVIWLHNGNEIQESEDFHFEQRGTQHSLCIQEVFPEDTGTYTCEAWNSAGEVR 705

Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASF-QWFIHSEPVVVTGKPTPLVTWSHDGTPM-K 349
           T   +T+      T    +      TAS  Q  + S    + G P P V W  DG  + K
Sbjct: 706 TQAVLTVQEPHDGTQPWFISKPRSVTASLGQSVLIS--CAIAGDPFPTVHWLRDGKALCK 763

Query: 350 EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
           +     + Q+ D +  L + +V P +AG Y     N VGE     +L ++
Sbjct: 764 DTGHFEVLQNED-VFTLVLKKVQPWHAGQYEILLKNRVGECSCQVSLMLQ 812

Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells. Responsible for high proliferative ability of breast cancer cells through anti-apoptosis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 8

>sp|P11799|MYLK_CHICK Myosin light chain kinase, smooth muscle OS=Gallus gallus PE=1 SV=2

 Score =  133 bits (334), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 170/426 (39%), Gaps = 48/426 (11%)

Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
           + P+F  + Q + + + Q   F  KV G P P + W K+G  +   E   I   +    L
Sbjct: 427 IPPQFESRPQSLEASEGQEIKFKSKVSGKPKPDVEWFKEGVPIKTGEGIQIYEEDGTHCL 486

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
            +      D G Y+C A N  G  + S  L V   +    AP F+  LK           
Sbjct: 487 WLKKACLGDSGSYSCAAFNPRGQTSTSWLLTVKRPKVEEVAPCFSSVLKGCTVSEGQDFV 546

Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
           L+  V G P P I W   ++ I   +  T E     G   L++ +A P+D+ +Y+  A N
Sbjct: 547 LQCYVGGVPVPEITWLLNEQPIQYAHS-TFE----AGVAKLTVQDALPEDDGIYTCLAEN 601

Query: 185 TFGRAECRANLVL--------RKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT 236
             GRA C A + +         + T   K     AP  ++ L  L V   S V +  E +
Sbjct: 602 NAGRASCSAQVTVKEKKSSKKAEGTQAAKLNKTFAPIFLKGLTDLKVMDGSQVIMTVEVS 661

Query: 237 GTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293
             P PE+ W  NGKEI   +    E K N   L I++   + TGKY     NE GE +T 
Sbjct: 662 ANPCPEIIWLHNGKEIQETEDFHFEKKGNEYSLYIQEVFPEDTGKYTCEAWNELGETQTQ 721

Query: 294 GSVTITVAEAETVMMDVRVESHPTASFQ-WFIHSEPVVVT--------------GKPTPL 338
            ++T+                 P    Q WFI S+P  VT              G P P 
Sbjct: 722 ATLTV---------------QEPQDGIQPWFI-SKPRSVTAAAGQNVLISCAIAGDPFPT 765

Query: 339 VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
           V W  DG  +  G    I Q+ D +  L +  V   +AG Y     N VGE     +L +
Sbjct: 766 VHWFKDGQEITPGTGCEILQNED-IFTLILRNVQSRHAGQYEIQLRNQVGECSCQVSLML 824

Query: 399 EEKEES 404
            E   S
Sbjct: 825 RESSAS 830

Phosphorylates a specific serine in the N-terminus of a myosin light chain, which leads to the formation of calmodulin/MLCK signal transduction complexes which allow selective transduction of calcium signals.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q63638|SPEG_RAT Striated muscle-specific serine/threonine-protein kinase OS=Rattus norvegicus GN=Speg PE=2 SV=2

 Score =  132 bits (332), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 137/535 (25%), Positives = 210/535 (39%), Gaps = 109/535 (20%)

Query: 6    APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            AP F   +Q +V       L  C +  +P P ++W+KDG+ LH+    LI       TL 
Sbjct: 726  APVFEIPLQNMVVAPGADVLLKCIITANPPPQVSWKKDGSVLHSEGRLLIRAEGERHTLL 785

Query: 66   IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKP-------------- 111
            +      D G YT  ATN  G A+C+++L V  +  +  +P F+ P              
Sbjct: 786  LREAQAADAGSYTATATNELGQASCASSLAV--RPGASTSP-FSSPITSDEEYLSPPEEF 842

Query: 112  ------------LKPVIAEA--------QSPATLKAT-----------------VTGRPT 134
                        +KP  ++         ++P T K +                 V G P 
Sbjct: 843  PEPGETWSRTPTMKPSPSQDRDSSDSSSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPK 902

Query: 135  PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRAN 194
            P + W R ++ + PD     E     G C L I  A   D   Y+ KAVN +G  +C A 
Sbjct: 903  PVVSWLRNRQPVRPDQRRFAE-EAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEAR 961

Query: 195  LVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS 254
            L +R      + R L    ++ PLQ + V        E    G    EV W   G+ +  
Sbjct: 962  LEVRAHP---ESRSL---AVLAPLQDVDVGAGEMALFECLVAGPADVEVDWLCRGRLLQP 1015

Query: 255  KDIETKDNVT----KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE---TVM 307
              ++ K +      KL++    +  +G Y  ++     E   S  +T+  + A     ++
Sbjct: 1016 ALLKCKMHFDGRKCKLLLTSVHEDDSGVYTCKLSTVKDELTCSARLTVRPSLAPLFTRLL 1075

Query: 308  MDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLA 367
             DV V     A            ++G P P VTW+H G P+ E + + + QD  GL  L 
Sbjct: 1076 EDVEVLEGRAARLD-------CKISGTPPPSVTWTHFGHPVNESENLRLRQD-GGLHSLH 1127

Query: 368  ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE--------------------ESGEA 407
            I+ V  E+ GLY  +A N  G+A  +A L VEE                      E G+ 
Sbjct: 1128 IARVGSEDEGLYEVSATNTHGQAHCSAQLYVEEPRTAASGPSSKLEKMPSIPEEPEHGDL 1187

Query: 408  -----PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTME 457
                 P F +PL+ +       A L+  VTG P P+I W+         NGH ++
Sbjct: 1188 ERLSIPDFLRPLQDLEVGLAKEAMLECQVTGLPYPTISWF--------HNGHRIQ 1234

Isoform 2 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
380018369	16174	PREDICTED: LOW QUALITY PROTEIN: titin-li	0.827	0.029	0.395	1e-105
332016542	17174	Titin [Acromyrmex echinatior]	0.829	0.027	0.387	1e-102
189235987	20466	PREDICTED: similar to BMKETTIN [Triboliu	0.913	0.025	0.381	2e-95
270004992	18024	hypothetical protein TcasGA2_TC030701 [T	0.913	0.029	0.381	2e-95
307172724	4539	Titin [Camponotus floridanus]	0.742	0.094	0.374	7e-86
242022530	2847	novex-3, putative [Pediculus humanus cor	0.860	0.174	0.341	6e-85
345496501	6229	PREDICTED: hypothetical protein LOC10067	0.706	0.065	0.381	2e-77
328725133	7175	PREDICTED: hypothetical protein LOC10016	0.816	0.065	0.366	1e-76
328784395	19028	PREDICTED: LOW QUALITY PROTEIN: hypothet	0.666	0.020	0.382	9e-76
321467012	2896	hypothetical protein DAPPUDRAFT_320914 [	0.794	0.158	0.362	2e-74

>gi|380018369|ref|XP_003693102.1| PREDICTED: LOW QUALITY PROTEIN: titin-like [Apis florea]

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 307/569 (53%), Gaps = 90/569 (15%)

Query: 5    LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
            +APRFI+K+QPV++  E  A FTC V G+P P +TW ++  ELH +E Y++T  E+ ++L
Sbjct: 6458 IAPRFIQKLQPVIAQPETTAKFTCTVFGNPFPEITWYRNEQELHVSEKYIMTIYETTASL 6517

Query: 65   EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
            EI    +ED G+Y+C+A+N  GVAT + NL++ EKEE G AP F  P+KP++ E   PA 
Sbjct: 6518 EITKVKEEDAGMYSCRASNPAGVATSTVNLVIFEKEEEGIAPHFATPIKPLMVEEHKPAQ 6577

Query: 125  LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
            L+  VTG P P + WYRG+EE+ P+ G  + FNP TGE  L I E T +DE +Y V+AVN
Sbjct: 6578 LECIVTGTPMPEVKWYRGEEELKPEKGREITFNPETGEAKLCILEPTEEDETIYRVRAVN 6637

Query: 185  TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
             FGRAECRANLV+     + KP VL AP I RPL AL+      +TL A++   PTPEVK
Sbjct: 6638 KFGRAECRANLVISNVVRVSKPEVLRAPKITRPLPALVAEFGKPLTLSADFESRPTPEVK 6697

Query: 245  WFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT-- 299
            W++NG EIV  D   I+  +N T+L I + TKK  GKYE+RV N  GEAR+SGSVT+   
Sbjct: 6698 WYRNGAEIVPSDKRVIKIYENTTELYIPEVTKKDGGKYEVRVENPVGEARSSGSVTVKER 6757

Query: 300  --------------------VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLV 339
                                V E E V+M+ RV+S+P ASFQWF                
Sbjct: 6758 EDKADEVKAPRFIEPLQPQIVTEGEVVIMETRVDSYPAASFQWF---------------- 6801

Query: 340  TWSHDGTPMKEGKEVTIY-QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
               HD  P++   ++ I  Q+   +  L I E+ PE +G+Y+C A N  G     AT+ +
Sbjct: 6802 ---HDTHPLESTPQMRIVTQENKSI--LMIKEIKPEFSGIYTCRAENVGGSVTCTATINL 6856

Query: 399  EEK--EESGE--APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGH 454
             +   EE+ E  +P F K L PV       A L   V G+PTP + WY   + I      
Sbjct: 6857 LDTPWEETVELVSPTFVKRLSPVRIMDGESANLTCIVQGKPTPRVEWYHDNKPIKEGKEI 6916

Query: 455  TMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVT 514
            T+    T G C L+I+E  P+D                                  G+ T
Sbjct: 6917 TI-VQDTEGVCSLAITEVFPED---------------------------------AGEYT 6942

Query: 515  CRAENVAGSVTCTATL-----SLLPESEV 538
            CRA N  G   CT++L       +P+SE+
Sbjct: 6943 CRAVNPVGEAVCTSSLIVEAYEYVPDSEI 6971

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016542|gb|EGI57423.1| Titin [Acromyrmex echinatior]

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/568 (38%), Positives = 304/568 (53%), Gaps = 88/568 (15%)

Query: 5    LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
            +APRFI+K+QPV++  ++ A FTC V G+PLP ++W K+  ELHA+E Y +T  E+  TL
Sbjct: 6101 IAPRFIQKLQPVIAELKKTAKFTCTVIGNPLPEISWYKNEQELHASEKYTMTIFETTVTL 6160

Query: 65   EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
            EI N  +ED G+Y+C+A+N  GVAT + NL++ EKEE G AP F+ P+KP++ E  +PA 
Sbjct: 6161 EITNVKEEDAGMYSCRASNPAGVATSTVNLVIFEKEEEGIAPHFSTPIKPLMIEEHTPAL 6220

Query: 125  LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
            L+  VTG P P + WYR ++E+ P+    + FNPTTGE  L I +  P+DE +Y V+A+N
Sbjct: 6221 LECIVTGMPIPEVKWYRDEKEVKPNERTELSFNPTTGEAKLKILKPIPEDETIYRVRAIN 6280

Query: 185  TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
             +GRAECRANLV+     + KP VL AP I RPL AL++ +  ++ L A++ G P PEVK
Sbjct: 6281 KYGRAECRANLVISNIVKVSKPIVLRAPRITRPLSALIIERGKSLKLLADFDGVPKPEVK 6340

Query: 245  WFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT-- 299
            WF+NG EI   +   I+  ++ T+L I + T K +GKYEIRV NE GEAR+S SVT+   
Sbjct: 6341 WFRNGIEITPTNKCKIDIYESTTELNIIEVTNKDSGKYEIRVQNEVGEARSSSSVTVKER 6400

Query: 300  --------------------VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLV 339
                                VAE E V+M+ RVES+P ASFQWF                
Sbjct: 6401 KDTISEVKAPMFVEPIQPQIVAEGEVVIMETRVESYPAASFQWF---------------- 6444

Query: 340  TWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
               H+  P++   +V I    +    L + EV  E AG Y+C A N  G     AT+ + 
Sbjct: 6445 ---HESKPLESTPQVRIVTQ-ENRSILMVKEVTSEFAGNYTCRAENVGGSVTCTATVNLM 6500

Query: 400  EK--EESGE--APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT 455
            E   EE+ E  +P F K L PV         L   V G+PTP + WY     I      T
Sbjct: 6501 EITWEEAIELVSPTFVKRLSPVKVMDGESVNLTCVVEGKPTPRVEWYHNDMPIKEGKEIT 6560

Query: 456  MEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTC 515
            +      G C L+I+E  P+D                                  G+ TC
Sbjct: 6561 I-IQDMEGVCSLAITEVFPED---------------------------------AGEYTC 6586

Query: 516  RAENVAGSVTCTATL-----SLLPESEV 538
            RA N  G   C +TL       +P+SE+
Sbjct: 6587 RAVNPVGEAVCMSTLIVEAYEYVPDSEI 6614

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235987|ref|XP_971849.2| PREDICTED: similar to BMKETTIN [Tribolium castaneum]

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 324/584 (55%), Gaps = 55/584 (9%)

Query: 5    LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
            +AP+F ++++PVVS  ++P    C+VEG P P + W K+   +HATE      VE+  TL
Sbjct: 7188 VAPKFTKRVEPVVSEPDKPTRLVCQVEGTPFPEIAWYKNEVLMHATERVFWNIVENTVTL 7247

Query: 65   EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
            E      +D+ VY+CKATN GGVAT +ANL++LEKEESG AP F +PLKP I E +S A 
Sbjct: 7248 EFAKVEPQDVAVYSCKATNPGGVATSTANLVILEKEESGVAPHFVEPLKPQIIEEKSKAV 7307

Query: 125  LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
            L+  V G+PTP + W++  +E++P   H + +NP TGE  L I + T +DE +++VKA N
Sbjct: 7308 LRCKVIGQPTPQVKWFKDNKEVVPSRSHQVTYNPQTGEATLEILKPTSEDEKIFTVKADN 7367

Query: 185  TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
             FG+AECRANLV+ KA T+ +P V+EAP I++P++A++V  D  V LEA + G P PE+K
Sbjct: 7368 KFGQAECRANLVISKAVTVTQPMVMEAPRIIKPVEAVMVKPDQEVVLEALFEGVPAPEIK 7427

Query: 245  WFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT-- 299
            W+KN KEI   D   IETKD  T L IK+  KK  GKYE+   N  GE RTSG+VT+T  
Sbjct: 7428 WYKNNKEIKQDDDYEIETKDKKTVLKIKKKVKKKGGKYEVHATNPKGEVRTSGTVTVTQT 7487

Query: 300  -VAEA-----------------ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
               EA                 E V+++  V+S P ASFQWF          K TP+++ 
Sbjct: 7488 ITEEAQPPKFLKPINPQYATVGEVVILEATVDSIPPASFQWF---------QKLTPIIS- 7537

Query: 342  SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
                TP     E+ I  + +    L +++V PE AG  +C A N VG     A+L V ++
Sbjct: 7538 ----TP-----EMKIVSE-ENRSTLILTDVTPEQAGTITCRAENAVGSVTCTASLNVVDE 7587

Query: 402  EE-----SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM 456
             E       E P+F KPL P+        T    VTG+PTP + WY   ++ + +    +
Sbjct: 7588 MEWEETRELEYPRFAKPLTPISVMDGEKVTFSCVVTGKPTPKVQWYHN-DQPVKEAKDVV 7646

Query: 457  EFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCR 516
                + G C L+ISE  P++  +Y+ +A +   + +   +  V     +   +IG  T  
Sbjct: 7647 ISQTSEGVCQLAISEVFPENAGIYTCRAVNKVGEAICKSSLIVEAYEYVPDSEIGHFTGS 7706

Query: 517  AENVAGSVTCTATLSLLPESEVTDVMESPRFIKT-PETAKVMDG 559
             E++        T+S  P S+ +D   +P+ IK  P+     DG
Sbjct: 7707 EEDLLAD----RTISEGPLSD-SDTECAPKIIKKLPQVVSTKDG 7745

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004992|gb|EFA01440.1| hypothetical protein TcasGA2_TC030701 [Tribolium castaneum]

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 324/584 (55%), Gaps = 55/584 (9%)

Query: 5    LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
            +AP+F ++++PVVS  ++P    C+VEG P P + W K+   +HATE      VE+  TL
Sbjct: 6895 VAPKFTKRVEPVVSEPDKPTRLVCQVEGTPFPEIAWYKNEVLMHATERVFWNIVENTVTL 6954

Query: 65   EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
            E      +D+ VY+CKATN GGVAT +ANL++LEKEESG AP F +PLKP I E +S A 
Sbjct: 6955 EFAKVEPQDVAVYSCKATNPGGVATSTANLVILEKEESGVAPHFVEPLKPQIIEEKSKAV 7014

Query: 125  LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
            L+  V G+PTP + W++  +E++P   H + +NP TGE  L I + T +DE +++VKA N
Sbjct: 7015 LRCKVIGQPTPQVKWFKDNKEVVPSRSHQVTYNPQTGEATLEILKPTSEDEKIFTVKADN 7074

Query: 185  TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
             FG+AECRANLV+ KA T+ +P V+EAP I++P++A++V  D  V LEA + G P PE+K
Sbjct: 7075 KFGQAECRANLVISKAVTVTQPMVMEAPRIIKPVEAVMVKPDQEVVLEALFEGVPAPEIK 7134

Query: 245  WFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT-- 299
            W+KN KEI   D   IETKD  T L IK+  KK  GKYE+   N  GE RTSG+VT+T  
Sbjct: 7135 WYKNNKEIKQDDDYEIETKDKKTVLKIKKKVKKKGGKYEVHATNPKGEVRTSGTVTVTQT 7194

Query: 300  -VAEA-----------------ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
               EA                 E V+++  V+S P ASFQWF          K TP+++ 
Sbjct: 7195 ITEEAQPPKFLKPINPQYATVGEVVILEATVDSIPPASFQWF---------QKLTPIIS- 7244

Query: 342  SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
                TP     E+ I  + +    L +++V PE AG  +C A N VG     A+L V ++
Sbjct: 7245 ----TP-----EMKIVSE-ENRSTLILTDVTPEQAGTITCRAENAVGSVTCTASLNVVDE 7294

Query: 402  EE-----SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM 456
             E       E P+F KPL P+        T    VTG+PTP + WY   ++ + +    +
Sbjct: 7295 MEWEETRELEYPRFAKPLTPISVMDGEKVTFSCVVTGKPTPKVQWYHN-DQPVKEAKDVV 7353

Query: 457  EFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCR 516
                + G C L+ISE  P++  +Y+ +A +   + +   +  V     +   +IG  T  
Sbjct: 7354 ISQTSEGVCQLAISEVFPENAGIYTCRAVNKVGEAICKSSLIVEAYEYVPDSEIGHFTGS 7413

Query: 517  AENVAGSVTCTATLSLLPESEVTDVMESPRFIKT-PETAKVMDG 559
             E++        T+S  P S+ +D   +P+ IK  P+     DG
Sbjct: 7414 EEDLLAD----RTISEGPLSD-SDTECAPKIIKKLPQVVSTKDG 7452

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172724|gb|EFN64030.1| Titin [Camponotus floridanus]

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 194/518 (37%), Positives = 264/518 (50%), Gaps = 88/518 (16%)

Query: 55  ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
           +T  E+ +TLEI    +ED G+Y+C+A+N  GVAT + NL++ EKEE G AP F+ P+KP
Sbjct: 1   MTIFETTATLEITKVKEEDAGMYSCRASNPAGVATSTVNLVIFEKEEEGVAPHFSTPIKP 60

Query: 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
           ++ +  +PA L+  VTG P P + WYRG+ E+ P+    + FNPTTGE  L I E TPQD
Sbjct: 61  LMVQEHTPALLECVVTGTPVPEVKWYRGEREVKPNEKTEITFNPTTGEAKLKILEPTPQD 120

Query: 175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE 234
           E +Y V+AVN +GRAECRANLV+     + KP VL AP I RPL AL+  +   + L A+
Sbjct: 121 ETIYRVRAVNKYGRAECRANLVISNIVKVSKPIVLRAPRITRPLPALVAERSKPLKLSAD 180

Query: 235 YTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291
           +   P PEVKWF+NG EI   D   I   ++  +L+I   TKK +GKYEIRV NEAGEAR
Sbjct: 181 FESAPKPEVKWFRNGIEIAPTDRCVINIYESTAELIISDVTKKDSGKYEIRVQNEAGEAR 240

Query: 292 TSGSVTIT----------------------VAEAETVMMDVRVESHPTASFQWFIHSEPV 329
           +S SVT+                       VAE E V+M+ +VES+PTASFQWF      
Sbjct: 241 SSSSVTVKDREDTTSEVKAPMFVKPIQPQLVAEGEVVIMETKVESYPTASFQWF------ 294

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
                        H+  P++   +V I    +    L + +V PE  G Y+C A N  G 
Sbjct: 295 -------------HESKPLESTPQVRIVTQ-ENRSILMVKQVTPELVGSYTCRAENVGGS 340

Query: 390 AVAAATLAVEEK--EESGE--APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK 445
               A++ + E   EE+ E  +P F K L PV         L   V G+P P + WY   
Sbjct: 341 VTCTASVNITETIWEEAIELISPTFVKRLSPVRVMDGESVNLTCVVEGKPIPRVEWYHND 400

Query: 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI 505
             I      T+      G C L+I+E  P+D                             
Sbjct: 401 MPIKEGKEITI-IQDMEGVCSLAITEVFPED----------------------------- 430

Query: 506 TRDQIGDVTCRAENVAGSVTCTATL-----SLLPESEV 538
                G+ TCRA N  G   C ++L       +P+SE+
Sbjct: 431 ----AGEYTCRAINPVGEAVCMSSLVVEAYEYVPDSEI 464

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022530|ref|XP_002431693.1| novex-3, putative [Pediculus humanus corporis] gi|212517001|gb|EEB18955.1| novex-3, putative [Pediculus humanus corporis]

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 204/597 (34%), Positives = 305/597 (51%), Gaps = 99/597 (16%)

Query: 7    PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
            PRFIE++QPVV +  +PA+F CKVEG P P ++W     EL  +E+Y++T V+  +TLEI
Sbjct: 1740 PRFIERLQPVVVNPGKPAVFVCKVEGQPFPNLSWYHSEVELFPSENYVMTLVDDTATLEI 1799

Query: 67   INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLK 126
            I P  + +G+Y+C+A+N  GVAT +AN I+LEK+ESG AP FT+PLKP   +   P TL 
Sbjct: 1800 IRPEPQHVGMYSCRASNPAGVATSTANFIILEKQESGIAPHFTEPLKPKATDEDKPVTLT 1859

Query: 127  ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186
             TV G+P P + W+  + EI+ D    ++++  TG+  + I +A  +DE +Y  +AVN F
Sbjct: 1860 FTVEGKPMPEVKWFIDEREIIEDERREIKYDKKTGKGFMKIHKAKLEDEVIYRCQAVNKF 1919

Query: 187  GRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWF 246
            G+AECR+N+++ K T   K   ++ P I +PL+A  V       L+ E+ GTP P++KWF
Sbjct: 1920 GKAECRSNIIVNKRTKEKKAPKMKPPKITKPLEATFVTVGDETILDVEFDGTPKPQIKWF 1979

Query: 247  KNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT------ 299
            KN  EI  K+ I  ++N T   I++  K+  GKYE++ VN  GEA+TS ++ +T      
Sbjct: 1980 KNNVEITEKEKIIIEENKTIHKIRKVKKQDGGKYEVKAVNPVGEAKTSATLRVTDRKTSE 2039

Query: 300  -----------------VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWS 342
                             VAE E V+++  VES+PT SFQW+  S                
Sbjct: 2040 EKEVKPPRFIKALKPQYVAEGEVVILEATVESYPTCSFQWYQRS---------------- 2083

Query: 343  HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
               TP+K   E  I ++ +    L I +  PE+ G Y+C A N VG   + ATL++ E+ 
Sbjct: 2084 ---TPIKSSPEYRIVEEPNRSV-LIIKQSKPEDVGDYTCRAENVVGSVTSTATLSIVEEI 2139

Query: 403  ESGEAPKFTKP--LKPVIAEA---QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTME 457
            E  E  +F  P  ++P+ ++             V G+P P + WY     I  ++  T  
Sbjct: 2140 EWEEVTEFKSPYFVEPITSQRVMDGEKVLFTCQVEGKPIPHVEWYHNNTPIH-ESKETTI 2198

Query: 458  FNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRA 517
            F  T G C L+++E  P+D                                  G+ TC A
Sbjct: 2199 FQDTEGVCYLAMNEVFPED---------------------------------AGEYTCTA 2225

Query: 518  ENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERL 574
             N  G   C+A+L          V+E+  ++   E A      SVL T Q G  E L
Sbjct: 2226 VNKLGEAVCSASL----------VVEAYEYVPDSEIA------SVLVTMQSGSEEDL 2266

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496501|ref|XP_003427738.1| PREDICTED: hypothetical protein LOC100679536 [Nasonia vitripennis]

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/459 (38%), Positives = 249/459 (54%), Gaps = 50/459 (10%)

Query: 55  ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
           +  VE+ +TLEI+   +ED+G+YTC+A+N  GVAT + NL++ EKEE G AP F  P+KP
Sbjct: 1   MINVETTATLEIVEVNEEDVGMYTCRASNPAGVATSTVNLVIFEKEEEGIAPHFLYPIKP 60

Query: 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT-MEFNPTTGECVLSISEATPQ 173
           ++ E  +PA L+  V G P P I WYR + EI+P+ G   + F P T    L+I E T +
Sbjct: 61  LMVEENTPAILECIVNGTPIPEIKWYRDENEIVPEEGKIEISFVPETCASKLTILEPTVE 120

Query: 174 DEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA 233
           DE +Y V+A+N FG+AECRANL++  A  + +P VL AP I RPL A++  +  ++ L  
Sbjct: 121 DETIYRVRAINKFGKAECRANLLINNAAVVTQPEVLYAPKITRPLPAVVAQRGKSLLLTV 180

Query: 234 EYTGTPTPEVKWFKNGKEIVS---KDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290
           E+     PEVKWFKN  EI S   K I+   N  +L + +T KK  GKYE+RV N  GEA
Sbjct: 181 EFESDSQPEVKWFKNNVEIKSSPDKIIKLYKNTAELYMPETKKKDAGKYEVRVQNTIGEA 240

Query: 291 RTSGSVTIT---------------------VAEAETVMMDVRVESHPTASFQWFIHSEPV 329
           R+SGSV++                      VAE E V+M+  VES+PTASFQWF      
Sbjct: 241 RSSGSVSVKNEEDVTEAKAPRFIQPIQPQIVAEGEVVIMESTVESYPTASFQWF------ 294

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
                        ++  P++   E+ I    D    L I EV PE +G Y+C A N  G 
Sbjct: 295 -------------YENNPLETSHEIRIVT-KDNKSVLMIKEVKPEFSGTYTCRAENVAGS 340

Query: 390 AVAAATLAVEEK--EESGE--APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK 445
             + AT+ +EE   E++ E  +P F K L P+         +   V G+P P + W+   
Sbjct: 341 VTSTATVDLEEIPWEKTIELVSPTFVKRLSPIRVMDGESVNMICVVHGKPIPKVEWFHDN 400

Query: 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 484
           + I      T+    + G C L+I+E  P+D   Y+ +A
Sbjct: 401 KPIKEGKQITI-CQDSEGICNLAINEVFPEDAGEYTCQA 438

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328725133|ref|XP_001949130.2| PREDICTED: hypothetical protein LOC100165938, partial [Acyrthosiphon pisum]

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/496 (36%), Positives = 265/496 (53%), Gaps = 23/496 (4%)

Query: 2    AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
            +E++AP FIEK+QP+V+  E+P  FTC V G P P + W +D  EL  T+ Y I   E+ 
Sbjct: 2941 SEIVAPYFIEKVQPLVAEHEKPTAFTCSVGGIPTPEVKWYRDDRELQTTDVYEIIVYENT 3000

Query: 62   STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
            STL I  PT+E  GVY C+ATN  G++TC+A L+VL+ EE GEAP F +P+KP   + + 
Sbjct: 3001 STLRISKPTEEQAGVYVCQATNSAGISTCTALLVVLDSEEIGEAPTFVEPIKPRKVKGKK 3060

Query: 122  PATLKATVTGRPTPSICWYRGKEEILPDNG-HTMEFNPTTGECVLSISEATPQDEAVYSV 180
               L+  V G P P I W R  EEI+ D+  +   F+  TGE +L++      D + Y  
Sbjct: 3061 SIELRCIVKGIPIPEIIWCRENEEIISDDDEYRTSFDSKTGEAILTLVNPIEVDRSTYLA 3120

Query: 181  KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT 240
            +AVN  G++EC A++      T +K    EAP  V  L+  +V  + T  L     G P+
Sbjct: 3121 RAVNIHGKSECMAHI------TFEKEEYGEAPKFVERLKPKVVKANETTELTCLVKGVPS 3174

Query: 241  PEVKWFKNGKEIVSKDIET-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295
            P V W ++ +EI+  +        +  V+KL+I          Y +  +N+ G A    +
Sbjct: 3175 PSVVWCRDDEEIIPDESHMLIYIPETGVSKLIIVHPDDIDESTYTVNAINKFGRAECRAN 3234

Query: 296  VTIT---VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW--SHDGTPMKE 350
            + +    + EA T +  V+    P  +    I      V G P PLV W   +D     E
Sbjct: 3235 LIVQKDELGEAPTFVQPVK----PKIAKANEITELKCFVKGTPKPLVIWCRGNDEIIPDE 3290

Query: 351  GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKF 410
               VT +Q+T G   L I      +  +Y+  AVN  G+A   A L + +K+ESGEAP F
Sbjct: 3291 CHLVTYHQET-GESILTILNPTEIDETIYTVNAVNKYGQAQCRANLII-QKDESGEAPIF 3348

Query: 411  TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS 470
             +P+KP IA+A     L   V G PTP++ W+RG  EI+PD  H++ F P TGE  L IS
Sbjct: 3349 VEPIKPKIAKANQATELNCLVRGIPTPTVVWFRGDVEIIPDTTHSITFIPDTGESKLVIS 3408

Query: 471  EATPQDEAVYSVKASS 486
            +AT  D+  Y+VKA++
Sbjct: 3409 KATEVDQNTYTVKATN 3424

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784395|ref|XP_623653.3| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC551259 [Apis mellifera]

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 182/476 (38%), Positives = 241/476 (50%), Gaps = 90/476 (18%)

Query: 98    EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157
             +KEE G AP F  P+KP++ E   PA L+  VTG P P + WYRG+EE+ P+ G  + FN
Sbjct: 11054 QKEEEGIAPHFATPIKPLMVEEHKPALLECIVTGTPMPEVKWYRGEEELKPEKGREITFN 11113

Query: 158   PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP 217
             P TGE  L I E T +DE +Y V+AVN FGRAECRANLV+     + KP VL +P I RP
Sbjct: 11114 PETGEAKLHILEPTEEDETIYRVRAVNKFGRAECRANLVISNVVRVSKPEVLRSPKITRP 11173

Query: 218   LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKK 274
             L AL+      +TL A++   PTPEVKW++NG EIV  D   I+  +N T+L I + TKK
Sbjct: 11174 LPALVAEFGKPLTLSADFESKPTPEVKWYRNGAEIVPSDKRVIKIYENTTELYIPEVTKK 11233

Query: 275   TTGKYEIRVVNEAGEARTSGSVTIT----------------------VAEAETVMMDVRV 312
               GKYE+RV N  GEAR+SGSVT+                       V E E V+M+ RV
Sbjct: 11234 DGGKYEVRVENPVGEARSSGSVTVKKREDKTDEVKAPRFIEPLQPQIVTEGEVVIMETRV 11293

Query: 313   ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY-QDTDGLCKLAISEV 371
             +S+PTASFQWF                   HD  P++   +V I  Q+   +  L I E+
Sbjct: 11294 DSYPTASFQWF-------------------HDTRPLESTPQVRIVTQENKSI--LMIKEI 11332

Query: 372   FPENAGLYSCTAVNPVGEAVAAATLAVEEK--EESGE--APKFTKPLKPVIAEAQSPATL 427
              PE +G Y+C A N  G     AT+ + +   EE+ E  +P F K L PV       A L
Sbjct: 11333 KPEYSGTYTCRAENVGGSVTCTATINLLDTPWEETVELVSPTFVKRLSPVRVMDGESANL 11392

Query: 428   KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
                V G+PTP + WY   + I      T+    T G C L+I+E  P+D           
Sbjct: 11393 TCIVQGKPTPRVEWYHDNKPIKEGKEITI-VQDTEGVCSLAITEVFPED----------- 11440

Query: 488   ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL-----SLLPESEV 538
                                    G+ TCRA N  G   CT++L       +P+SE+
Sbjct: 11441 ----------------------AGEYTCRAVNPVGEAVCTSSLIVEAYEYVPDSEI 11474

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321467012|gb|EFX78004.1| hypothetical protein DAPPUDRAFT_320914 [Daphnia pulex]

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 189/521 (36%), Positives = 255/521 (48%), Gaps = 61/521 (11%)

Query: 6    APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL-ITTVESVSTL 64
            AP F +K+QP+ S   +     C+ +G PLPT+TW ++ + L  T   L ITT  + S L
Sbjct: 1350 APVFTKKLQPLSSRTGKKVRLHCQFQGEPLPTITWYRNESVLLPTADRLDITTEPASSVL 1409

Query: 65   EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
            EI     ED G+YTC+A N  G A  SAN IV  K E GEAP+F  PL P+ A    P  
Sbjct: 1410 EISQIVLEDTGIYTCRAVNEAGSAITSANFIVQAKGEGGEAPRFVLPLSPIRASDGEPTK 1469

Query: 125  LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
            L  T+TG+P P I WY G+ EI P       F P TG   L+I+E  P DE VY  +A N
Sbjct: 1470 LICTLTGKPIPQITWYCGQREIRPSRDFQPAFEPATGAASLTIAEVFPDDEGVYRCRATN 1529

Query: 185  TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
            T G AEC A L +     +    ++ AP I +PL+   V   S   +   + G PTPEVK
Sbjct: 1530 THGTAECEAPLTVGDMIVVSHQELVRAPVIAQPLEPDRVETGSRKVMTIRFDGYPTPEVK 1589

Query: 245  WFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT-- 299
            W+ NG+EI   +   + T  N + LV+ +    + GKYE R +NE GEARTS S+ +T  
Sbjct: 1590 WYHNGREIQQTENRLVTTFKNESTLVVVRCDADSAGKYEARAMNEGGEARTSASIQLTDG 1649

Query: 300  ------------------VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
                              V E+E ++M+V V+S P   F W  H + VV   +   +VT 
Sbjct: 1650 KATAQQPPKFRKALRPQIVPESEAIVMEVEVDSAPECVFSWKQHGQ-VVRNTEAMQIVTQ 1708

Query: 342  SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
            ++  T                   L I E F EN+G+Y+  A N  G   + ATL VE +
Sbjct: 1709 NNRST-------------------LFIPESFVENSGIYTVKAENAAGSVASTATLTVERQ 1749

Query: 402  EESGEAPKFTKPLKPVIAEAQSPAT---------LKATVTGRPTPSICWYRGKEEILPDN 452
              + E   FT P   ++ E   P T         L   V G P P I WY   + +   N
Sbjct: 1750 LLAEE---FTPPF--IVKEL--PQTKVMDGEEVRLICQVNGTPMPRIKWYHNGQPVREHN 1802

Query: 453  GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493
            G  M  +P  GE VL ++EA P+D  VY  KA +   +I T
Sbjct: 1803 GVMMSLSP-QGEAVLRLAEAFPEDAGVYECKAVNRAGQITT 1842

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
FB|FBgn0086906	18	sls "sallimus" [Drosophila mel	0.937	30.16	0.338	2.4e-72
WB|WBGene00006820	8081	unc-89 [Caenorhabditis elegans	0.804	0.057	0.288	2.6e-46
FB|FBgn0052311	3651	zormin "zormin" [Drosophila me	0.635	0.100	0.284	2e-40
FB|FBgn0053519	4218	Unc-89 "Unc-89" [Drosophila me	0.785	0.107	0.269	1.1e-37
UNIPROTKB|Q8WZ42	34	TTN "Titin" [Homo sapiens (tax	0.630	10.73	0.277	4.6e-29
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.823	14.02	0.253	3.9e-30
UNIPROTKB|F1PV45	35	F1PV45 "Uncharacterized protei	0.823	13.62	0.246	1e-24
RGD|1310915	1942	Mylk "myosin light chain kinas	0.632	0.188	0.291	3e-32
UNIPROTKB|F1PIF6	1960	MYLK "Uncharacterized protein"	0.639	0.188	0.284	5.8e-35
UNIPROTKB|Q15746	1914	MYLK "Myosin light chain kinas	0.633	0.191	0.292	4.4e-34

FB|FBgn0086906 sls "sallimus" [Drosophila melanogaster (taxid:7227)]

 Score = 757 (271.5 bits), Expect = 2.4e-72, Sum P(2) = 2.4e-72
 Identities = 197/582 (33%), Positives = 290/582 (49%)

Query:     3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
             E+  PR  EK++P     E+P +  CKVEG P P + W  +   L A+E Y IT +E V+
Sbjct:  6532 EIKPPRITEKLRPRQCVPEEPTVLECKVEGVPFPEIKWYFNDILLFASEKYEITVMEQVA 6591

Query:    63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
              L+I   T  D+GVYTC+A N  GVAT   N I+LEKE+ G  P+FTKPLK    E + P
Sbjct:  6592 KLKIAKVTPSDVGVYTCEAKNEAGVATSRTN-IILEKEQ-GVPPQFTKPLKIEFIEEKQP 6649

Query:   123 ATLKATVT----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
               LK TVT    G+P P + WYRG EE++P     M ++  TG+  L +   TP +  VY
Sbjct:  6650 ERLKVTVTCQVTGKPNPEVKWYRGIEEVIPSETVQMFYDEKTGDVALEVINPTPNEAVVY 6709

Query:   179 SVKAVNTFGRAECRANLVLRKATTIDK-PR-VLEAPTIVRPLQALLVPKDSTVTLEAEYT 236
             SV+A N FGRA   AN++ R    +D+ PR +L+APT+  PL A++VP   T+  EA+Y 
Sbjct:  6710 SVQAQNQFGRAIGNANILSR----VDEVPREILKAPTVT-PLSAVVVPTGGTLFFEAKYD 6764

Query:   237 GTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293
             G P PEVKW +NG+EI+  +   IET +  T + +   T+K TGKYE+   N+ GEA++S
Sbjct:  6765 GLPRPEVKWMRNGREIIENEETIIETTETTTTIKVVNMTRKRTGKYEVWAKNKVGEAKSS 6824

Query:   294 GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV---VTGKPTPLVTWSHDGTPMKE 350
             GSV ++  + +  +   R    P     +  H   ++   V  +P     W     P+K 
Sbjct:  6825 GSVVVSDQKPDEQIKPPRF-IQPLEPKYFGEHEVAIIEAIVESEPLSSFQWFVHNEPIKS 6883

Query:   351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSGE--AP 408
               EV I    +    L I     +  G ++C A N                  + E  +P
Sbjct:  6884 SNEVRIVSQANK-STLLIENFQSKFVGPFTCRAENVGGSVTSTATVNLIPQEEAEEFESP 6942

Query:   409 KFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
             +F + L +PV         L   VTG+PTP + WY   E+I  +N  T       G C L
Sbjct:  6943 RFVEELVQPVEVMDGEALLLTCQVTGKPTPKVEWYHNAEKIT-ENKETTISQDLQGVCQL 7001

Query:   468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
              I+E  P++E  Y   A++   K ++  N  +     I   +I  +T   E++       
Sbjct:  7002 QITEVFPENEGQYECVATNKIGKSVSKTNVKIQAFEYIPDSEITGLTGSEEDLLDR---- 7057

Query:   528 ATLSLLPESEVTDVMESPRFIKT-PETAKVMDGQSVLFTAQV 568
              TLS+    E     ++P+ IK  PE  +  +G+      +V
Sbjct:  7058 -TLSI---DE-----QAPKIIKKLPEKIEPKEGEQAKLEVKV 7090

GO:0030017 "sarcomere" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0004687 "myosin light chain kinase activity" evidence=ISS

GO:0003779 "actin binding" evidence=IMP;IDA

GO:0030018 "Z disc" evidence=IMP;IDA

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0016203 "muscle attachment" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IGI;IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0007520 "myoblast fusion" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=IMP

GO:0007498 "mesoderm development" evidence=IEP

GO:0007517 "muscle organ development" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

WB|WBGene00006820 unc-89 [Caenorhabditis elegans (taxid:6239)]

 Score = 458 (166.3 bits), Expect = 2.6e-46, Sum P(3) = 2.6e-46
 Identities = 143/495 (28%), Positives = 223/495 (45%)

Query:     6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-TL 64
             AP F+E ++     ++Q A+  CKV+G P P + W K+G E+  +        +  + TL
Sbjct:  3816 APEFVELLRSCTVTEKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875

Query:    65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV-LE--KEESGEAPKFTKPLKPVIAEAQS 121
                N T+ D G Y C+A N  G A     +IV LE   +  GEAP F +P+KP +     
Sbjct:  3876 TFDNVTQADAGEYRCEAENEYGSAWTEGPIIVTLEGAPKIDGEAPDFLQPVKPAVVTVGE 3935

Query:   122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
              A L+  ++G+P PS+ WY+  EE+ P +   +E N   G   L+++ A   D   Y  +
Sbjct:  3936 TAVLEGKISGKPKPSVKWYKNGEELKPSDRVKIE-NLDDGTQRLTVTNAKLDDMDEYRCE 3994

Query:   182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
             A N FG  +  +++ L    T+ +P  + AP   + L A+ V +  T   E + +GT  P
Sbjct:  3995 ASNEFG--DVWSDVTL----TVKEPAQV-APGFFKELSAIQVKETETAKFECKVSGTK-P 4046

Query:   242 EVKWFKNG---KEIVSKDIETKDNVT-KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
             +VKWFK+G   KE      E+ D+ T +LVI+ +     G Y I V N+AG A +   V 
Sbjct:  4047 DVKWFKDGTPLKEDKRVHFESTDDGTQRLVIEDSKTDDQGNYRIEVSNDAGVANSK--VP 4104

Query:   298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT-I 356
             +TV  +ET+ +   +           + S  V V GKP   V W + GT      + T I
Sbjct:  4105 LTVVPSETLKIKKGLTDVNVTQGTKILLS--VEVEGKPKT-VKW-YKGTETVTSSQTTKI 4160

Query:   357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKPLKP 416
              Q T+   KL I      + G Y                            P F K L  
Sbjct:  4161 VQVTESEYKLEIESAEMSDTGAYRVVLSTDSFSVESSATVTVTKAAEKISLPSFKKGLAD 4220

Query:   417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
                   +P  L+  + G+P   + WY+  +EI   +G   +     G+  L+I +   +D
Sbjct:  4221 QSVPKGTPLVLEVEIEGKPK-DVKWYKNGDEI--KDGKVEDLG--NGKYRLTIPDFQEKD 4275

Query:   477 EAVYSVKASSTETKI 491
                YSV A++   +I
Sbjct:  4276 VGEYSVTAANEAGEI 4290

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005021 "vascular endothelial growth factor-activated receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0017048 "Rho GTPase binding" evidence=IPI

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

GO:0031430 "M band" evidence=IDA

GO:0019902 "phosphatase binding" evidence=IPI

FB|FBgn0052311 zormin "zormin" [Drosophila melanogaster (taxid:7227)]

 Score = 398 (145.2 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
 Identities = 113/397 (28%), Positives = 175/397 (44%)

Query:     6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
             +P F   ++  VS +    +F C+V G P P + W KDG  +     Y  T  + +  L 
Sbjct:  1376 SPLFTRPLKDAVSREGDRFVFECEVTGTPEPAVEWFKDGISIQTNSDYKTTFDKGICRLV 1435

Query:    66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEA----PKFTKPLKPVIAEAQS 121
             I      D   ++C+A+N+  V TC  N  +  +E + E     P+  + L+   A   S
Sbjct:  1436 IEETFAADSARFSCRASNL--VGTCDTNATLSVRENAAEVQLVPPRILRFLQSGKATEGS 1493

Query:   122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
                    V G P P++ W++  + I     + + +N   GE  L   E   +D+AVY+  
Sbjct:  1494 SFQFACVVAGVPLPTVQWFKNDKCIDDSPDYVISYN--NGEATLKFEEVFLEDDAVYTCS 1551

Query:   182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
             A N  G   C A+L++       +P   E P+   PL   +      + LEA   G P P
Sbjct:  1552 ASNPAGIEHCSASLIVEPL----EPT--ELPSFKVPLSNAMARVGQKIKLEAIVGGIPRP 1605

Query:   242 EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT-- 299
             EV W  NGK    +D + +     L+I Q      G Y +   N AGEA TS +V +   
Sbjct:  1606 EVYWLHNGKPFQPRDSKYEYGRVTLIIPQAYPNDAGSYVLSAKNLAGEAYTSCNVIVKGR 1665

Query:   300 ----VAEAETV--MMDVRVESH-PTASFQWFIHSEPV----VVTGKPTPLVTWSHDGTPM 348
                  +++E    +  ++   H P      F   +PV    V+ G+P P V W H+  P+
Sbjct:  1666 LPNETSDSEMASDIEPIKPAVHLPLKDVSIF-EGKPVRLDCVIVGQPEPEVIWYHNERPV 1724

Query:   349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
             KE  +V +    D  C L I EV+ E+AG Y   A+N
Sbjct:  1725 KESADVQLLFQGDR-CSLIIQEVYQEDAGHYKVVAIN 1760

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0053519 Unc-89 "Unc-89" [Drosophila melanogaster (taxid:7227)]

 Score = 403 (146.9 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
 Identities = 134/498 (26%), Positives = 204/498 (40%)

Query:     7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD------------GTE-LHATEHY 53
             P FI + +    H  +P      V G PLPT+ W KD            G + L+A E  
Sbjct:  2113 PTFIVQPESQSIHDYRPVSTKVLVHGVPLPTIEWFKDDKPINYEAINKPGKDKLYAKEDT 2172

Query:    54 LITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLK 113
                T +  S L+I +  + D+G YTC ATN  GV      L +L       AP F K L 
Sbjct:  2173 KKGTDQIESVLDIKSFRENDVGAYTCVATNEIGVTKAPFKLAMLSL-----APSFVKKLD 2227

Query:   114 PVIAEAQS-PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 172
               +   Q  P  L+  V G P P++ W +  +E+ P     +  NP  G   L I+   P
Sbjct:  2228 NALDVLQGEPLVLECCVDGSPLPTVQWLKDGDEVKPSESIKISTNPD-GLVKLEINSCQP 2286

Query:   173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
              D   Y +   N  G        V   A  + KP  ++ P  ++P+ +  V     + LE
Sbjct:  2287 NDSGAYKLIISNPHGEK------VALCAVAV-KPEEMQ-PKFLKPITSQTVVVGEPLKLE 2338

Query:   233 AEYTGTPTPEVKWFKNGKEI-VSKDIE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288
             A+ TG P PEVKW+K+G  +  S +I    + +    L+I        G Y+  + N+ G
Sbjct:  2339 AQVTGFPAPEVKWYKDGMLLRPSPEINFINSPNGQIGLIIDAAQPLDAGVYKCLIANKGG 2398

Query:   289 EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
             E      V I   E++ V +    E    +S + F     + V G P P + W H+G  +
Sbjct:  2399 EIEGVSKVEIVPKESKPVFV---AELQDASSIEGFPVKMDIKVVGNPKPKLQWFHNGHEI 2455

Query:   349 K-EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXX---XXXXS 404
             K +   + I ++ D    L I +  P ++GLY   A NP                    +
Sbjct:  2456 KPDASHIAIVENPDNSSSLIIEKTAPGDSGLYEVIAQNPEGSTASKAKLYVAPKADETAT 2515

Query:   405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
              EAP+F   L+ V A+      L A     P P + W +    + P+    M  +   G+
Sbjct:  2516 EEAPQFVSALRDVNADEGQELVLSAPFISNPMPEVIWSKDGVTLTPNERLLMTCD---GK 2572

Query:   465 CV-LSISEATPQDEAVYS 481
              + L+I  A   D   Y+
Sbjct:  2573 HIGLTIKPAEAADSGNYT 2590

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IKR

GO:0004672 "protein kinase activity" evidence=IKR

GO:0045214 "sarcomere organization" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

GO:0031430 "M band" evidence=IDA

UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)]

 Score = 322 (118.4 bits), Expect = 4.6e-29, Sum P(3) = 4.6e-29
 Identities = 109/393 (27%), Positives = 171/393 (43%)

Query:     7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
             P F  ++ PV +   + A F C V G     ++W KD  E+ +   Y I+ +E+ + L +
Sbjct:  9080 PFFDIRLAPVDAVVGESADFECHVTGTQPIKVSWAKDSREIRSGGKYQISYLENSAHLTV 9139

Query:    67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA-TL 125
             +   K D G YTC A N  G  +C+A L + E+      P FTK L   + E +  +  L
Sbjct:  9140 LKVDKGDSGQYTCYAVNEVGKDSCTAQLNIKERLIP---PSFTKRLSETVEETEGNSFKL 9196

Query:   126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185
             +  V G    ++ WY+   EI P +   + F   T   VL + +A   D  +Y+ K  N 
Sbjct:  9197 EGRVAGSQPITVAWYKNNIEIQPTSNCEITFKNNT--LVLQVRKAGMNDAGLYTCKVSND 9254

Query:   186 FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKW 245
              G A C +++V+++     KP V +     + L  + V +   V L     G+    ++W
Sbjct:  9255 AGSALCTSSIVIKEPK---KPPVFD-----QHLTPVTVSEGEYVQLSCHVQGSEPIRIQW 9306

Query:   246 FKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI---- 298
              K G+EI   D            L ++   K  +G Y  +  N AG   T   VTI    
Sbjct:  9307 LKAGREIKPSDRCSFSFASGTAVLELRDVAKADSGDYVCKASNVAGSDTTKSKVTIKDKP 9366

Query:   299 TVAEA-ETVMMDVRV--ESHPTAS--FQWFIHSEPVVVTGKPTPLVTWSHDG-TPMKEGK 352
              VA A +   +D R+   S P +    +    +    V G P P V W+      + +G 
Sbjct:  9367 AVAPATKKAAVDGRLFFVSEPQSIRVVEKTTATFIAKVGGDPIPNVKWTKGKWRQLNQGG 9426

Query:   353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
              V I+Q  D   KL I +    ++GLY C A N
Sbjct:  9427 RVFIHQKGDE-AKLEIRDTTKTDSGLYRCVAFN 9458

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0031430 "M band" evidence=IEA;IDA

GO:0043056 "forward locomotion" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0002020 "protease binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0051592 "response to calcium ion" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007076 "mitotic chromosome condensation" evidence=IEP

GO:0051015 "actin filament binding" evidence=IDA

GO:0042805 "actinin binding" evidence=IDA;IPI

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0035995 "detection of muscle stretch" evidence=TAS

GO:0031433 "telethonin binding" evidence=ISS;IPI

GO:0003300 "cardiac muscle hypertrophy" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
 Identities = 129/508 (25%), Positives = 207/508 (40%)

Query:     5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
             L P F  +++ V      P +F C V G    +++W KDG  +  + +   + +++V+TL
Sbjct:  8965 LPPSFSRQLRDVQETVGLPVVFECAVSGSEPISVSWFKDGRPVKDSPNIQASFLDNVATL 9024

Query:    65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
              I    +   G Y+C ATN  G A+ SA LI+ E +     P F  PL PV A     A 
Sbjct:  9025 NIFQTDRSFAGQYSCTATNPIGSASSSARLILTEGKNP---PFFDIPLAPVDAVVGESAD 9081

Query:   125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
              +  VTG     + W +   EI     + + +   +    L+I +    D   Y+  AVN
Sbjct:  9082 FECHVTGTQPIKVAWAKDNREIRSGGNYQISYLENSAH--LTILKVDKGDSGQYTCYAVN 9139

Query:   185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD-STVTLEAEYTGTPTPEV 243
               G+  C A L +       K R++  P+  + L   +   + ++  LE    G+    V
Sbjct:  9140 EVGKDSCTAQLNI-------KERLIP-PSFTKKLSETVEETEGNSFKLEGRVAGSQPISV 9191

Query:   244 KWFKNGKEI--VSK-DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
              W+KN  EI   S  +I  K+N   L IK+      G Y  +V N+AG A  + S+ I  
Sbjct:  9192 AWYKNNIEIHPTSNCEITFKNNTLLLQIKRAGMDDAGLYTCKVSNDAGSALCTSSIVIKE 9251

Query:   301 AEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
              +   V  D  + +  TAS   F+     V   +P   + W   G  +K     + +   
Sbjct:  9252 PKKPPVF-DQHL-TPVTASEGEFVQLSCHVWGSEPIR-IQWLKAGREIKPSDRCS-FSFA 9307

Query:   361 DGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSGEAPK---------FT 411
             +G   L + +V   +AG Y C A N                  +  A K         F 
Sbjct:  9308 NGTAVLELKDVTKADAGDYVCKASNVAGSDTSKSKVTIKDKPAAVPAAKKAAVDGKLFFV 9367

Query:   412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
                + +    ++ AT  A V G P P++ W +GK   L   G  +  +    E  L I +
Sbjct:  9368 SEPQSIRVVEKTTATFIAKVGGDPIPNVKWTKGKWRQLNQGGRIL-IHQKGDEAKLEIRD 9426

Query:   472 ATPQDEAVYSVKASSTETKIMTDGNRSV 499
              T  D  +Y   A +   +I ++ N  V
Sbjct:  9427 TTKTDSGLYRCVAFNKHGEIESNVNLQV 9454

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 334 (122.6 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
 Identities = 125/508 (24%), Positives = 205/508 (40%)

Query:     5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
             L P F  +++ V      P +F C + G    +++W KDG  L    +   + +++V+TL
Sbjct:  8978 LPPSFSRQLRDVQETVGLPVVFECTINGSEPISVSWYKDGKPLKDGPNVQTSFLDNVATL 9037

Query:    65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
              I    +   G Y+C ATN  G A+ SA LI+ E +     P F  P+ PV A     A 
Sbjct:  9038 NIFKTDRSLAGQYSCTATNPIGSASSSARLILTEGKNP---PFFDIPVAPVDAVVGESAD 9094

Query:   125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
              +  VTG     + W +   EI     + + +   +    L+I +    D   Y+  AVN
Sbjct:  9095 FECHVTGTQPIKVTWAKDNREIRSGGNYQISYLENSAH--LTILKVDKGDSGQYTCYAVN 9152

Query:   185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD-STVTLEAEYTGTPTPEV 243
               G+  C A L +       K R++  P+  + L   +   + ++  LE    G+    V
Sbjct:  9153 EVGKDSCTAQLNI-------KERLIP-PSFTKKLSETVEETEGNSFRLEGRVAGSQPITV 9204

Query:   244 KWFKNGKEI--VSK-DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
              W+KN  EI   S  +I  K+N   L +K+      G Y  +V N+AG A  + S+ I  
Sbjct:  9205 AWYKNNIEIHPTSNCEITFKNNTLLLHVKKAGMGDAGLYTCKVSNDAGSALCTSSIVIKE 9264

Query:   301 AEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
              +   V  D  + +  T S   F+     V   +P   + W   G  +K     + +   
Sbjct:  9265 PKKAPVF-DQHL-TPVTVSEGEFVQLSCHVQGSEPIR-IQWLKAGREIKPSDRCS-FSFA 9320

Query:   361 DGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSGEAPK---------FT 411
             +G   L + +V   ++G Y C A N                  +  A K         F 
Sbjct:  9321 NGTAVLELKDVAKADSGDYVCKASNAAGSDTSKSKVTIKDKPAAVPAAKKAAVDGRLFFV 9380

Query:   412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
                + +    ++ AT  A V G P P++ W +GK   L   G  +  +    E  L I +
Sbjct:  9381 SEPQSIRVVEKTTATFIAKVGGDPIPNVKWTKGKWRQLNQGGR-IHIHQKGDEAKLEIRD 9439

Query:   472 ATPQDEAVYSVKASSTETKIMTDGNRSV 499
              T  D  +Y   A +   +I ++ N  V
Sbjct:  9440 TTKTDSGLYRCVAFNKHGEIESNVNLQV 9467

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

RGD|1310915 Mylk "myosin light chain kinase" [Rattus norvegicus (taxid:10116)]

 Score = 343 (125.8 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
 Identities = 116/398 (29%), Positives = 173/398 (43%)

Query:     7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
             P+F  + Q     + Q   FTC+V G P P + W  +G  +   E  ++   E  ++  +
Sbjct:   402 PKFESQPQSQEVTEGQTVKFTCEVSGIPKPEVGWFLEGIPVRRQEG-IVEIYEDGTSHYL 460

Query:    67 INPTK--EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP-VIAEAQSPA 123
               P     D G Y+C A+N  G  +CS  L V     +  AP F+  LK  V+ E Q   
Sbjct:   461 CLPRAGTRDSGRYSCTASNTLGQVSCSWTLRVDRPSLTQTAPSFSSVLKDSVVIEGQD-F 519

Query:   124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT---TGECVLSISEATPQDEAVYSV 180
              L+ +V G P P + W      +L  NG  ++F  +    GE  L I +A P+D   Y+ 
Sbjct:   520 VLRCSVRGTPAPQVTW------LL--NGQPIQFARSICEAGEAELHIQDALPEDRGTYTC 571

Query:   181 KAVNTFGRAECRANLVLR-------KATTIDK-PRVLEAPTIVRPLQALLVPKDSTVTLE 232
              A N  G+  C A + ++       +A  +   P  L AP  ++ L  L V   S VT+ 
Sbjct:   572 LAENALGQVSCSATVTVQEKKGEGERAHRLPPAPSKLFAPIFLQGLSDLKVMDGSQVTMT 631

Query:   233 AEYTGTPTPEVKWFKNGKEIV-SKDI--ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289
              + +G P PEV W  +G EI  S+D   E K     L I++   + TG Y     N AGE
Sbjct:   632 VQVSGNPPPEVIWLHDGNEIQESEDFHFEQKGGWHSLCIQEVFPEDTGTYTCEAWNSAGE 691

Query:   290 ARTSGSVTITVAEAETVMMDVRVESHPTASF-QWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
              RT   +T+      T    +      TAS  Q  + S    + G P P V W  DG  +
Sbjct:   692 VRTQAILTVQEPHDGTQPWFISKPRSVTASLGQSVLIS--CAIAGDPFPTVHWLRDGKAL 749

Query:   349 -KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
              ++     + Q+ D +  L +  V P +AG Y     N
Sbjct:   750 SRDHGHFELLQNED-VFTLVLKNVQPWHAGQYEILLKN 786

GO:0001725 "stress fiber" evidence=IEA

GO:0004687 "myosin light chain kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0032060 "bleb assembly" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IEA

GO:0071476 "cellular hypotonic response" evidence=IEA

GO:0090303 "positive regulation of wound healing" evidence=IEA

UNIPROTKB|F1PIF6 MYLK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 363 (132.8 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
 Identities = 112/394 (28%), Positives = 171/394 (43%)

Query:     7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTLE 65
             P+F  K Q     +++   F C+V G P P +TW  +G  +   E  +    E     L 
Sbjct:   416 PKFESKPQSQEVSEDETVKFRCEVSGTPKPEVTWFLEGAPVKRREGMVEVYEEGGCHYLC 475

Query:    66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP-VIAEAQSPAT 124
             ++    +D G Y+C A+N+ G  +C   L+V        AP F+  LK   + E Q    
Sbjct:   476 LLRVRAKDSGSYSCTASNVRGQVSCGWTLLVKRLAVMEVAPSFSSVLKDCAVIEGQD-FV 534

Query:   125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
             L+ +V G P P I W   ++ I     H+   +   G   L I +A P+D+ +Y+  A N
Sbjct:   535 LQCSVQGTPVPQITWLLNEQPI--QYAHS---SCEAGVAELHIQDALPEDDGIYTCLAKN 589

Query:   185 TFGRAECRANLVLRKATTIDKPRVL--------EAPTIVRPLQALLVPKDSTVTLEAEYT 236
             T G+  C A + + +  +  K   L         AP  ++ L  L V   S VT+  + +
Sbjct:   590 TLGQVSCSARVTVHEKKSDRKSGYLLRTAPGKPVAPLFLQGLSDLKVMDGSQVTMTVQVS 649

Query:   237 GTPTPEVKWFKNGKEIV-SKDIETKDNVTK--LVIKQTTKKTTGKYEIRVVNEAGEARTS 293
             G P PEV W  NG EI  S+D   +   T+  L I++   + TG Y     N AGE RT 
Sbjct:   650 GNPPPEVIWLHNGNEIQESEDFHFEQRGTQHSLCIQEVFPEDTGTYTCEAWNSAGEVRTQ 709

Query:   294 GSVTITVAEAETVMMDVRVESHPTASF-QWFIHSEPVVVTGKPTPLVTWSHDGTPM-KEG 351
               + +   +  T    +      TAS  Q  + S    + G P P V W  DG  + K+ 
Sbjct:   710 AVLMVQEPQDGTQPWFISKPRSLTASLGQTVLIS--CAIAGDPFPTVHWLRDGKALSKDS 767

Query:   352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
                 + Q+ D +  L +  V P +AG Y     N
Sbjct:   768 GHFEVLQNED-VFTLVLKNVQPWHAGQYEIQLKN 800

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|Q15746 MYLK "Myosin light chain kinase, smooth muscle" [Homo sapiens (taxid:9606)]

 Score = 351 (128.6 bits), Expect = 4.4e-34, Sum P(3) = 4.4e-34
 Identities = 116/397 (29%), Positives = 171/397 (43%)

Query:     7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST-LE 65
             P+F  K Q     + Q   F C+V G P P + W  +GT +   E  +    ++ S  L 
Sbjct:   414 PKFESKPQSQEVKENQTVKFRCEVSGIPKPEVAWFLEGTPVRRQEGSIEVYEDAGSHYLC 473

Query:    66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP-VIAEAQSPAT 124
             ++     D G Y+C A+N  G  +CS  L V        AP F+  LK   + E Q    
Sbjct:   474 LLKARTRDSGTYSCTASNAQGQLSCSWTLQVERLAVMEVAPSFSSVLKDCAVIEGQD-FV 532

Query:   125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT---GECVLSISEATPQDEAVYSVK 181
             L+ +V G P P I W      +L  NG  +++  +T   G   L I +A P+D   Y+  
Sbjct:   533 LQCSVRGTPVPRITW------LL--NGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCL 584

Query:   182 AVNTFGRAECRANLVLRKATTIDKPRVL--------EAPTIVRPLQALLVPKDSTVTLEA 233
             A N  G+  C A + + +  +  K   L         AP  ++ L  L V   S VT+  
Sbjct:   585 AENALGQVSCSAWVTVHEKKSSRKSEYLLPVAPSKPTAPIFLQGLSDLKVMDGSQVTMTV 644

Query:   234 EYTGTPTPEVKWFKNGKEIV-SKDIETKDNVTK--LVIKQTTKKTTGKYEIRVVNEAGEA 290
             + +G P PEV W  NG EI  S+D   +   T+  L I++   + TG Y     N AGE 
Sbjct:   645 QVSGNPPPEVIWLHNGNEIQESEDFHFEQRGTQHSLCIQEVFPEDTGTYTCEAWNSAGEV 704

Query:   291 RTSGSVTITVAEAETVMMDVRVESHPTASF-QWFIHSEPVVVTGKPTPLVTWSHDGTPM- 348
             RT   +T+      T    +      TAS  Q  + S    + G P P V W  DG  + 
Sbjct:   705 RTQAVLTVQEPHDGTQPWFISKPRSVTASLGQSVLIS--CAIAGDPFPTVHWLRDGKALC 762

Query:   349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
             K+     + Q+ D +  L + +V P +AG Y     N
Sbjct:   763 KDTGHFEVLQNED-VFTLVLKKVQPWHAGQYEILLKN 798

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030027 "lamellipodium" evidence=IDA

GO:0030335 "positive regulation of cell migration" evidence=IDA

GO:0004687 "myosin light chain kinase activity" evidence=IDA

GO:0051928 "positive regulation of calcium ion transport" evidence=IDA

GO:0032154 "cleavage furrow" evidence=IDA

GO:0001725 "stress fiber" evidence=IDA

GO:0090303 "positive regulation of wound healing" evidence=IDA

GO:0071476 "cellular hypotonic response" evidence=IDA

GO:0006939 "smooth muscle contraction" evidence=ISS

GO:0014820 "tonic smooth muscle contraction" evidence=ISS

GO:0032060 "bleb assembly" evidence=IMP

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006936 "muscle contraction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	579
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-25
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	9e-19
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	5e-16
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-15
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-14
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-14
smart00409	85	smart00409, IG, Immunoglobulin	1e-14
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	3e-14
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-13
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-12
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	5e-11
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-10
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	1e-09
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-09
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	1e-09
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-09
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-08
smart00409	85	smart00409, IG, Immunoglobulin	1e-08
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	3e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-08
smart00409	85	smart00409, IG, Immunoglobulin	6e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	7e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-07
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	2e-07
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-07
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	3e-07
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	3e-07
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	4e-07
pfam00047	62	pfam00047, ig, Immunoglobulin domain	5e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-07
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	9e-07
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	9e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-06
smart00409	85	smart00409, IG, Immunoglobulin	1e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	1e-06
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	1e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-06
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	2e-06
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	2e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	3e-06
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	3e-06
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-06
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	4e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	5e-06
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	8e-06
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	8e-06
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	8e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	9e-06
smart00409	85	smart00409, IG, Immunoglobulin	9e-06
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	9e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	9e-06
cd05864	70	cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l	2e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	2e-05
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-05
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	3e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	3e-05
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	3e-05
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	3e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	4e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	4e-05
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	5e-05
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	5e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	5e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	7e-05
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	7e-05
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	7e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	9e-05
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-04
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	1e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	1e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	1e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	2e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	2e-04
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	2e-04
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	2e-04
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	2e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	3e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	3e-04
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	3e-04
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	3e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	4e-04
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	5e-04
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	5e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	5e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	5e-04
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	6e-04
cd05895	76	cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-	6e-04
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	6e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	8e-04
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	8e-04
cd05863	67	cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l	8e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	9e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	9e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	9e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	0.001
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	0.001
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.002
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.002
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.002
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.002
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.002
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	0.002
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	0.002
cd05855	79	cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-	0.002
cd05759	82	cd05759, Ig2_KIRREL3-like, Second immunoglobulin (	0.002
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.003
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.003
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	0.003
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	0.003
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.003
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	0.004
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	0.004
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	0.004
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	0.004
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	0.004
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 99.6 bits (249), Expect = 2e-25
 Identities = 37/90 (41%), Positives = 50/90 (55%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
          P+F +K + V   + + A FTC V G P PT++W KDG  L +++ + +T      TL I
Sbjct: 1  PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIV 96
           N   +D G YTC ATN  G A  SA L V
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 80.8 bits (200), Expect = 9e-19
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
           PKFT+  K V  +    A    TVTG P P++ W++  + +   +   + +    G   L
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEG--GTYTL 58

Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANL 195
           +IS   P DE  Y+  A N+ G AE  A L
Sbjct: 59  TISNVQPDDEGKYTCVATNSAGEAEASAEL 88

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 73.1 bits (180), Expect = 5e-16
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
           VTG P P V+W  DG P++      +  +  G   L IS V P++ G Y+C A N  GEA
Sbjct: 24  VTGDPDPTVSWFKDGQPLRSSDRFKVTYE-GGTYTLTISNVQPDDEGKYTCVATNSAGEA 82

Query: 391 VAAATLAV 398
            A+A L V
Sbjct: 83  EASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 35/123 (28%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
           PKFT+  K V  +    A    TVTG P P++ W++  + +   +   + +    G   L
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEG--GTYTL 58

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
           +IS   P DE  Y                                 TC A N AG    +
Sbjct: 59  TISNVQPDDEGKY---------------------------------TCVATNSAGEAEAS 85

Query: 528 ATL 530
           A L
Sbjct: 86  AEL 88

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVI 268
           P   +  + + V +  +       TG P P V WFK+G+ + S D   +  +     L I
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
                   GKY     N AGEA  S  +T+
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPTKEDIGVYTCK 80
          +    +C+  G P P +TW K G +L A    + ++   S STL I N T ED G YTC 
Sbjct: 10 ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69

Query: 81 ATNIGGVATCSANLIV 96
          ATN  G A+    L V
Sbjct: 70 ATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPTKEDIGVYTCK 80
          +    +C+  G P P +TW K G +L A    + ++   S STL I N T ED G YTC 
Sbjct: 10 ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69

Query: 81 ATNIGGVATCSANLIV 96
          ATN  G A+    L V
Sbjct: 70 ATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 67.6 bits (166), Expect = 3e-14
 Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 228 TVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVV 284
           +V LE   +G PTP V W K+GK +       IET  + T LVIK   +  +GKY + + 
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60

Query: 285 NEAGEARTSGSVTITV 300
           N AGE     S TI V
Sbjct: 61  NPAGEK----SATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 65.2 bits (158), Expect = 2e-13
 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 24 ALFTCKVEGHPLPTMTWQKDGTEL----HATEHYLITTVESVSTLEIINPTKEDIGVYTC 79
             TC   G P PT+TW K+G  L             T    STL I N T ED G YTC
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 80 KATNIGGVATCSAN 93
           A+N  G  + S  
Sbjct: 61 VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
          Q    TC  EG+P+P +TW KDG  L  +       V S STL I + + ED G+YTC A
Sbjct: 3  QSVTLTCPAEGNPVPNITWLKDGKPLPES----NRFVASGSTLTIKSVSLEDSGLYTCVA 58

Query: 82 TN 83
           N
Sbjct: 59 EN 60

Length = 63

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 24/67 (35%), Positives = 33/67 (49%)

Query: 30 VEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVAT 89
          + G P PT+TW KDG  L  +    I T  S ++L I N  + D G YT    N  G  +
Sbjct: 8  ISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS 67

Query: 90 CSANLIV 96
           + N+ V
Sbjct: 68 ATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
             G P P +TW  DG P+ E         T     L I  V  E++GLY+C A N  G
Sbjct: 11  AEGNPVPNITWLKDGKPLPESNRFVASGST-----LTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83
            F C+V G P+PT+ W+K+  EL          +    +L+I N T  D G YTC+A N
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGELPKGR----AEILDDKSLKIRNVTAGDEGSYTCEAEN 56

Query: 84 IGGVATCSANLIV 96
          + G    SA+L V
Sbjct: 57 MVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 28 CKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87
          CK +  P PT++W K GTEL  T    I       +LEI+N TK D G YTC A N  G 
Sbjct: 8  CKPKAAPKPTISWSK-GTEL-LTNSSRICIWPD-GSLEILNVTKSDEGKYTCFAENFFGK 64

Query: 88 ATCSANLIV 96
          A  + +L V
Sbjct: 65 ANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 24 ALFTCKVEGHPLPTMTWQKDG-TELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
          A   C   GHP P + WQKDG T+  A     +  +       I++   ED GVY+C A 
Sbjct: 1  ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQ 60

Query: 83 NIGGVATCSANLIVL 97
          N  G  + +A L VL
Sbjct: 61 NTAGSISANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL-----HATEHYLITTVES 60
           PR +E    ++  +  PA   CK EG P PT+ W K+G  L         H ++    S
Sbjct: 1  PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 61 VSTLEIIN--PTKEDIGVYTCKATNIGGVATCSAN 93
          +  L +++    + D GVY C A N  G A     
Sbjct: 61 LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNA 95

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 113 KPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEAT 171
             V  +     TL    +G P P + WY+ G + +      ++  + +T    L+IS  T
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTS--TLTISNVT 59

Query: 172 PQDEAVYSVKAVNTFGRAECRANL 195
           P+D   Y+  A N+ G A     L
Sbjct: 60  PEDSGTYTCAATNSSGSASSGTTL 83

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 113 KPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEAT 171
             V  +     TL    +G P P + WY+ G + +      ++  + +T    L+IS  T
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTS--TLTISNVT 59

Query: 172 PQDEAVYSVKAVNTFGRAECRANL 195
           P+D   Y+  A N+ G A     L
Sbjct: 60  PEDSGTYTCAATNSSGSASSGTTL 83

Length = 85

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 27/71 (38%), Positives = 37/71 (52%)

Query: 28 CKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87
          C  EG PLP +TW K+G ++       +T + + S L I N   ED G YTC A N  GV
Sbjct: 5  CHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV 64

Query: 88 ATCSANLIVLE 98
              ++L V +
Sbjct: 65 DEDISSLFVED 75

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTT 276
           + V +  +VTL  E +G+P PEV W+K G +++++     +    + + L I   T + +
Sbjct: 4   VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63

Query: 277 GKYEIRVVNEAGEARTSGSVTITV 300
           G Y     N +G A  S   T+TV
Sbjct: 64  GTYTCAATNSSGSA--SSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTT 276
           + V +  +VTL  E +G+P PEV W+K G +++++     +    + + L I   T + +
Sbjct: 4   VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63

Query: 277 GKYEIRVVNEAGEARTSGSVTITV 300
           G Y     N +G A  S   T+TV
Sbjct: 64  GTYTCAATNSSGSA--SSGTTLTV 85

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 49.4 bits (117), Expect = 7e-08
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDI-------ETKDNVTKLVIKQTTKKTTGKYEI 281
           VTL    +G P P + W KNGK + S  +        T    + L I   T + +G Y  
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 282 RVVNEAGEARTS 293
              N AG    S
Sbjct: 61  VASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT--GECVLSISEATPQDEAVYSV 180
            TL    +G P P+I W +  + +       +  +  T  G   L+IS  T +D   Y+ 
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 181 KAVNTFGRAECRAN 194
            A N+ G       
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 11/72 (15%)

Query: 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLIT--------TVESVSTLEIINPTKEDIG 75
          A F C V G P P +TW+K   ++H  E+ ++          V ++  L I N   +D G
Sbjct: 4  ASFHCDVTGRPPPEITWEK---QVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60

Query: 76 VYTCKATNIGGV 87
          +YTC A N GG+
Sbjct: 61 LYTCTARNSGGL 72

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 11/84 (13%)

Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
           P V  + +    TC   G+P P  TW KDG  L ++++   T           N + ED
Sbjct: 7  SPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTP----------NVSAED 56

Query: 74 IGVYTCKATNIGGV-ATCSANLIV 96
           G YTC A+N GG   +    L V
Sbjct: 57 SGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
            V ++G+PTP VTWS DG P+K    V I + T     L I      ++G Y+ T  NP 
Sbjct: 5   EVPISGRPTPTVTWSKDGKPLKLSGRVQI-ETTASSTSLVIKNAERSDSGKYTLTLKNPA 63

Query: 388 GEAVAAATLAV 398
           GE  A   + V
Sbjct: 64  GEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288
           V L  +    P PE++W+KNGK I  K+   K   + L IK  T++  G Y + + N+  
Sbjct: 1   VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHS-LTIKDVTEEDAGNYTVVLTNKQA 59

Query: 289 EARTSGSVTITV 300
           +     + T+ V
Sbjct: 60  KLEKRLTFTLVV 71

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 26/82 (31%), Positives = 42/82 (51%)

Query: 5  LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
          L    + K + +   + + A F+C V+G P PT+TW ++G  + +++ + IT+ E  ST 
Sbjct: 2  LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTF 61

Query: 65 EIINPTKEDIGVYTCKATNIGG 86
          EI      D G YT    N  G
Sbjct: 62 EISKVQMSDEGNYTVVVENSEG 83

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEH-YLITTVESVSTLEIINPTKEDIGVYTC 79
                TC V G P   +TW K+G  L  +          S  TL I N T ED G YTC
Sbjct: 1  GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 80 KA 81
            
Sbjct: 61 VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 46.7 bits (110), Expect = 8e-07
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQD---TDGLCKLAISEVFPENAGLYSCTAVNPV 387
            +G P P +TW  +G P+       +      + G   L IS V  E++G Y+C A N  
Sbjct: 7   ASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66

Query: 388 GEAVAAAT 395
           G   A+ T
Sbjct: 67  GTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 47.2 bits (112), Expect = 9e-07
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL-----PDNGHTMEFNPT 159
            P+  +    +I     PATL     GRPTP+I W +  + +      P +   +   P+
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVL--PS 58

Query: 160 TGECVLSI--SEATPQDEAVYSVKAVNTFGRAECRAN 194
                L +        DE VY   A N+ G A  R  
Sbjct: 59  GSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNA 95

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 7  PRFIEK----IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
          P F E+    I P  S + + +L  C+  G P PT  W  +GTE+        + V    
Sbjct: 2  PVFEEQPDDTIFPEESDEGKVSL-NCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG--G 58

Query: 63 TLEIINPTK-EDIGVYTCKATNIGG 86
           L I NP+K +D G Y C A+NI G
Sbjct: 59 NLVISNPSKAKDAGRYQCLASNIVG 83

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 415 KPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEAT 473
             V  +     TL    +G P P + WY+ G + +      ++  + +T    L+IS  T
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTS--TLTISNVT 59

Query: 474 PQDEAVYSVKASST 487
           P+D   Y+  A+++
Sbjct: 60  PEDSGTYTCAATNS 73

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 415 KPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEAT 473
             V  +     TL    +G P P + WY+ G + +      ++  + +T    L+IS  T
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTS--TLTISNVT 59

Query: 474 PQDEAVYSVKASST 487
           P+D   Y+  A+++
Sbjct: 60  PEDSGTYTCAATNS 73

Length = 85

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85
          F C+ +G+P P + W K G++L     +L   V S  TL I      D G Y C+A NI 
Sbjct: 7  FLCEAQGYPQPVIAWTKGGSQLSVDRRHL---VLSSGTLRISRVALHDQGQYECQAVNIV 63

Query: 86 GVATCSANLIV 96
          G     A L V
Sbjct: 64 GSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK----LVIKQTTKKTTGK 278
           VP  STV L+   +G P P + W K+GK    +       V K    L+++      +GK
Sbjct: 6   VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGK 65

Query: 279 YEIRVVNEAGE 289
           Y   V N+ G 
Sbjct: 66  YTCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 226 DSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVN 285
             +VTL     G P P + W K+GK +   +       + L IK  + + +G Y     N
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG-STLTIKSVSLEDSGLYTCVAEN 60

Query: 286 EAG 288
            AG
Sbjct: 61  SAG 63

Length = 63

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 22 QPALFTCKVEGHPLPTMTW-QKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK 80
          Q A   CK  G P P + W   DG  +  +     T V    TL+I+  T +D G +TC 
Sbjct: 2  QRATLRCKARGDPEPAIHWISPDGKLISNSSR---TLVYDNGTLDILITTVKDTGSFTCI 58

Query: 81 ATNIGGVATCSANLIV 96
          A+N  G AT +  L +
Sbjct: 59 ASNAAGEATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 25 LFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84
          +F C+V G P PT+ W K+G  +  ++++ I    ++  L ++   K D G Y C A N 
Sbjct: 3  VFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLV---KSDEGFYQCIAEND 59

Query: 85 GGVATCSANLIV 96
           G     A LI+
Sbjct: 60 VGNVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 328 PVVVTGKPTPLVTWSHDGT---PMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV 384
               TG PTP + W  DG    P    + + +  + D      I +V  E+ G+YSCTA 
Sbjct: 4   ECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD---VFFIVDVKIEDTGVYSCTAQ 60

Query: 385 NPVGEAVAAATLAV 398
           N  G   A ATL V
Sbjct: 61  NTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 32 GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87
          GHP PT++W+KDG  L   ++  +  V+    L I    K D G Y C ATN+ G 
Sbjct: 23 GHPEPTVSWRKDGQPL-NLDNERVRIVDD-GNLLIAEARKSDEGTYKCVATNMVGE 76

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 44.8 bits (105), Expect = 4e-06
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT--GECVLSISEATPQDEAVYSV 482
            TL    +G P P+I W +  + +       +  +  T  G   L+IS  T +D   Y+ 
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 483 KAS 485
            AS
Sbjct: 61  VAS 63

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 7  PRFIEK----IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
          P F+++    I P  S +++  L  C+  G+P+PT  W ++GTE+     Y  + ++   
Sbjct: 2  PVFVQEPDDAIFPTDSDEKKVIL-NCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--G 58

Query: 63 TLEIINPTK-EDIGVYTCKATNIGGV 87
           L I NP++ +D G Y C ATN  G 
Sbjct: 59 NLIISNPSEVKDSGRYQCLATNSIGS 84

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
          Q     C  +G P PTMTW KDG  + + E       E  S + I++  K D   YTC A
Sbjct: 19 QSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN-EDGSEMTILDVDKLDEAEYTCIA 77

Query: 82 TNIGGVATCSANLIVLEK 99
           N  G      +L V  K
Sbjct: 78 ENKAGEQEAEIHLKVFAK 95

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 43.7 bits (103), Expect = 8e-06
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 28 CKVEGHPLPTMTWQKDGTEL-HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86
          C ++GHP PT  W +DGT L     +Y +++ E   TL    P  +D G+Y C A N  G
Sbjct: 5  CHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGP--DDSGLYYCCAHNAFG 62

Query: 87 VATCSANL 94
              S N 
Sbjct: 63 SVCSSQNF 70

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-TLEIINPTKEDIGVYTCKAT 82
              C+ EG P PT+TW+ +G  +          V+  +  L  + P   D  VY C A+
Sbjct: 4  GRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPN--DTAVYQCNAS 61

Query: 83 NIGGVATCSANLIVL 97
          N+ G    +A + V+
Sbjct: 62 NVHGYLLANAFVHVV 76

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 28 CKVEGHPLPTMTWQKDGTEL-HATEHYLITTVESVS---TLEIINPTKEDIGVYTCKATN 83
          C+V   P P + W+K+   L + T+   I+  +       L I N  KED G YT  A N
Sbjct: 5  CRVSAIPPPQIFWKKNNEMLTYNTDR--ISLYQDNCGRICLLIQNANKEDAGWYTVSAVN 62

Query: 84 IGGVATCSANLIV 96
            GV +C+A L V
Sbjct: 63 EAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 331 VTGKPTPLVTWSHDG-TPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
            +G P P VTW   G   + E    ++ +       L IS V PE++G Y+C A N  G 
Sbjct: 18  ASGSPPPEVTWYKQGGKLLAESGRFSVSRS-GSTSTLTISNVTPEDSGTYTCAATNSSGS 76

Query: 390 AVAAATLAV 398
           A +  TL V
Sbjct: 77  ASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 331 VTGKPTPLVTWSHDG-TPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
            +G P P VTW   G   + E    ++ +       L IS V PE++G Y+C A N  G 
Sbjct: 18  ASGSPPPEVTWYKQGGKLLAESGRFSVSRS-GSTSTLTISNVTPEDSGTYTCAATNSSGS 76

Query: 390 AVAAATLAV 398
           A +  TL V
Sbjct: 77  ASSGTTLTV 85

Length = 85

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 333 GKPTPLVTWSHDGTPMKE-GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV 391
           G P P V+W  DG P+    + V I    DG   L I+E    + G Y C A N VGE  
Sbjct: 23  GHPEPTVSWRKDGQPLNLDNERVRIV--DDG--NLLIAEARKSDEGTYKCVATNMVGERE 78

Query: 392 -AAATLAV 398
            AAA L+V
Sbjct: 79  SAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 43.3 bits (102), Expect = 9e-06
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
           P    G P P +TW+ DG  + E  +  I  +      LAI +V   + G Y C A N +
Sbjct: 4   PCSAQGDPEPTITWNKDGVQVTESGKFHISPEG----YLAIRDVGVADQGRYECVARNTI 59

Query: 388 GEAVAAATLA 397
           G A  +  L+
Sbjct: 60  GYASVSMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288
           V +  +Y G P PEVKW+KNG+ IV      +     L I + T+K  G Y + + N   
Sbjct: 1   VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVH--LTIYEVTEKDAGNYTVVLTNPIT 58

Query: 289 EARTSGSVTITV 300
           +     +  + V
Sbjct: 59  KEEQRHTFQLVV 70

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAG 377
           +S +W         +G P P   W  +G P+     + +         L I+++   ++G
Sbjct: 15  SSLRW-----ECKASGNPRPAYRWLKNGQPLASENRIEVEAG-----DLRITKLSLSDSG 64

Query: 378 LYSCTAVNPVGEAVAAATLAV 398
           +Y C A N  G   A+A LAV
Sbjct: 65  MYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI-ETKDNVTKLVIKQTTKKTTG 277
           + +  P  S+V L+   +G P P++ W K+ K +   +I E++     L +K    + +G
Sbjct: 2   RVIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSG 61

Query: 278 KYEIRVVNEAGE 289
           KY   V N AGE
Sbjct: 62  KYTCHVSNRAGE 73

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
              TL     G P P+I W +   + LP++   +          L+I   + +D  +Y+ 
Sbjct: 3   QSVTLTCPAEGNPVPNITWLK-DGKPLPESNRFVA-----SGSTLTIKSVSLEDSGLYTC 56

Query: 181 KAVNTFG 187
            A N+ G
Sbjct: 57  VAENSAG 63

Length = 63

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
           V G P P V W  +   + +G+   I  D      L I  V   + G Y+C A N VG+ 
Sbjct: 7   VGGDPVPTVLWRKEDGELPKGR-AEILDDK----SLKIRNVTAGDEGSYTCEAENMVGKI 61

Query: 391 VAAATLAV 398
            A+A+L V
Sbjct: 62  EASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-TLEIINPTKEDIGVYTCKATN 83
            C   G+P PT+TW KDG             V     TL + +    D G YTC   N
Sbjct: 14 LKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVEN 72

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 21/70 (30%), Positives = 29/70 (41%)

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288
           +  E E TG PTP VKW KNG  ++  D         L +    K   G Y+    N+ G
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Query: 289 EARTSGSVTI 298
             +    + I
Sbjct: 62  NVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 18/101 (17%)

Query: 8  RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH----------YLITT 57
           F+ +   +V+ +  P +  C  EG P P + W+KDG  L+               LIT+
Sbjct: 1  WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60

Query: 58 VESVSTLEIINPTKEDIGVYTCKATN--IGGVATCSANLIV 96
          V            K D G Y C A N  +G + + +A L V
Sbjct: 61 VVHSKH------NKPDEGFYQCVAQNDSLGSIVSRTARLTV 95

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 28 CKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87
          CK +  P P  +W K GTEL      +  ++    +LEI+N TK D G YTC A N  G 
Sbjct: 8  CKPKAAPKPKFSWSK-GTELLVNNSRI--SIWDDGSLEILNITKLDEGSYTCFAENNRGK 64

Query: 88 ATCSANLIV 96
          A  +  L V
Sbjct: 65 ANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA 392
             P P ++WS     +     + I+ D      L I  V   + G Y+C A N  G+A +
Sbjct: 12  AAPKPTISWSKGTELLTNSSRICIWPDGS----LEILNVTKSDEGKYTCFAENFFGKANS 67

Query: 393 AATLAV 398
             +L+V
Sbjct: 68  TGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 12 KIQPVVSHQEQP---ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIIN 68
           +    +        A   C  EG PLP + W   G  +  T    + T   +  L++ N
Sbjct: 3  PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSN 62

Query: 69 PTKEDIGVYTCKATNIGGVATCSANLIV 96
           T E     TC A N  G A  S  + V
Sbjct: 63 ITSETQTTVTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT------ 264
            P IV     L+V K    TL  +  G PTP ++W KNG+ + +   + + +        
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 265 ----KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
               ++V  +  +   G Y     N  GEA +  +  
Sbjct: 61  LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASL 97

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 28 CKVEGHPLPTMTWQKDGTEL-HATEHYLITTVESVSTLEIINP-TKEDIGVYTCKATNIG 85
          C+V G P P + W+K+   L H T+   +          +I   TKED G YT  A N  
Sbjct: 5  CRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEA 64

Query: 86 GVATCSANLIV 96
          G+ +C+A L V
Sbjct: 65 GIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 26 FTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83
           TC  EG P P T++W ++G+    +         S STL + + T ED G YTC A+N
Sbjct: 20 LTCSAEGGPPPPTISWYRNGSISGGSGG----LGSSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
             G P P +TW  +G P++E       +   G   L +S V P +  +Y C A N  G  
Sbjct: 10  AEGIPQPTITWRLNGVPIEELPPDPRRRVDGG--TLILSNVQPNDTAVYQCNASNVHGYL 67

Query: 391 VAAATLAV 398
           +A A + V
Sbjct: 68  LANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 21/71 (29%), Positives = 29/71 (40%)

Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
           L+  V+  P P I W +  E +  +      +    G   L I  A  +D   Y+V AVN
Sbjct: 3   LECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVN 62

Query: 185 TFGRAECRANL 195
             G   C A L
Sbjct: 63  EAGVVSCNARL 73

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 28 CKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86
          C   G+P P +TW KD   L  TE  +  + +   TL + N   ED G YTC  +N  G
Sbjct: 16 CVASGNPRPDITWLKDNKPLTPTE--IGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 237 GTPTPEVKWFKNGKEIVSKD------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290
             P+   KWFK+GKE+  K+      I  K   ++L I +     +G+Y   V N  G  
Sbjct: 10  EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69

Query: 291 RTSGSV 296
             + +V
Sbjct: 70  TVTANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 423 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 482
              TL     G P P+I W +   + LP++   +          L+I   + +D  +Y+ 
Sbjct: 3   QSVTLTCPAEGNPVPNITWLK-DGKPLPESNRFVA-----SGSTLTIKSVSLEDSGLYTC 56

Query: 483 KASS 486
            A +
Sbjct: 57  VAEN 60

Length = 63

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA 392
           G P P +TW+ DG P++ G+E   + + DG  ++ I +V   +   Y+C A N  GE  A
Sbjct: 29  GFPEPTMTWTKDGEPIESGEEKYSFNE-DG-SEMTILDVDKLDEAEYTCIAENKAGEQEA 86

Query: 393 AATLAV 398
              L V
Sbjct: 87  EIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 32 GHPLPTMTWQKDGTELHAT---EHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA 88
           +P     W KDG EL+      +  I   +  S L+I      D G YTC   NI G  
Sbjct: 10 EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69

Query: 89 TCSANL 94
          T +AN+
Sbjct: 70 TVTANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 30 VEGHPLPTMTWQKDGTELHATEH-------YLITTVESVSTLEIINPTKEDIGVYTCKAT 82
          V G+P PT+TW  +G  L+ +++        + T  E    L+  NPT  + G YT  A+
Sbjct: 7  VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66

Query: 83 N 83
          N
Sbjct: 67 N 67

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 226 DSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYE 280
             T+ L     G P PEV W KN + +   D     +E     + L IK  + + +GKY 
Sbjct: 16  GKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYAS-LTIKGVSSEDSGKYG 74

Query: 281 IRVVNEAGEARTSGSVTITV 300
           I V N+ G    +  VT++V
Sbjct: 75  IVVKNKYGG--ETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 237 GTPTPEVKWFKNGKEI---VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293
           G P P + W KNG +I   +SK +    N ++L I     + TG Y     NEAG     
Sbjct: 9   GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDI 68

Query: 294 GSVTI 298
            S+ +
Sbjct: 69  SSLFV 73

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIET----KDNVTK--LVIKQTTKKTTGKYEIR 282
           V LE   +  P P++ W KN  E+++ + +     +DN  +  L+I+   K+  G Y + 
Sbjct: 1   VRLECRVSAIPPPQIFWKKN-NEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVS 59

Query: 283 VVNEAG 288
            VNEAG
Sbjct: 60  AVNEAG 65

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 28 CKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87
          CK  G+P P   W K+G  L +     +        L I   +  D G+Y C A N  G 
Sbjct: 21 CKASGNPRPAYRWLKNGQPLASENRIEV----EAGDLRITKLSLSDSGMYQCVAENKHGT 76

Query: 88 ATCSANLIV 96
             SA L V
Sbjct: 77 IYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 30/73 (41%)

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
             L+  ++  P P I W R  E +  +      +   +G   L I     +D   Y+V A
Sbjct: 1   VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA 60

Query: 183 VNTFGRAECRANL 195
           VN  G A C A L
Sbjct: 61  VNEAGVATCHARL 73

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 22/70 (31%), Positives = 32/70 (45%)

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
           V ++G+P P VTWS       E +     +    L    I     E+ G+Y+ T  NPVG
Sbjct: 17  VPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVG 76

Query: 389 EAVAAATLAV 398
           E  A+  + V
Sbjct: 77  EDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 28 CKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87
          C   G+P+P + W+K    + ++         S + L+I N   ED G Y C+A NI G 
Sbjct: 23 CFALGNPVPQIKWRKVDGSMPSSA----EISMSGAVLKIPNIQFEDEGTYECEAENIKGK 78

Query: 88 ATCSANLIV 96
           T    + V
Sbjct: 79 DTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
           VTGKPTP V W  +G  +       I ++ +    L +  +   + G Y C A N VG  
Sbjct: 8   VTGKPTPTVKWVKNGDMVIPSDYFKIVKEHN----LQVLGLVKSDEGFYQCIAENDVGNV 63

Query: 391 VAAATLAV 398
            A A L +
Sbjct: 64  QAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 237 GTPTPEVKWFKNGKEIVSKDIETKD-NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293
           G P P V W K+G+ +   +   +  +   L+I +  K   G Y+    N  GE  ++
Sbjct: 23  GHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA 80

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
           + G P P   W  DGTP+ +G+        +    L +    P+++GLY C A N  G  
Sbjct: 7   IDGHPRPTYQWFRDGTPLSDGQGNYSVSSKER--TLTLRSAGPDDSGLYYCCAHNAFGSV 64

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK-EDIGVYTC 79
          E+     C+    P  T  W+ +GTE+        T V     L I NP K  D G Y C
Sbjct: 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--AGNLVINNPQKARDAGSYQC 76

Query: 80 KATN-IGGVATCSANL 94
           A N  G V +  ANL
Sbjct: 77 LAINRCGTVVSREANL 92

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC-VLSISEATPQDEAVYSVKAV 183
           L+  ++GRPTP++ W +  + +       +E   TT     L I  A   D   Y++   
Sbjct: 4   LEVPISGRPTPTVTWSKDGKPLKLSGRVQIE---TTASSTSLVIKNAERSDSGKYTLTLK 60

Query: 184 NTFGRAE 190
           N  G   
Sbjct: 61  NPAGEKS 67

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 20/81 (24%)

Query: 123 ATLKATVTGRPTPSICWYR-------GKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
              +  V G P P++ W +       G+ EIL D               L I   T  DE
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKS-------------LKIRNVTAGDE 47

Query: 176 AVYSVKAVNTFGRAECRANLV 196
             Y+ +A N  G+ E  A+L 
Sbjct: 48  GSYTCEAENMVGKIEASASLT 68

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 12/76 (15%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQD--------TDGLCKLAISEVFPENAGLYSCT 382
           VTG+P P +TW         GKE  I +            + +L I    P++AGLY+CT
Sbjct: 10  VTGRPPPEITWEKQ----VHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCT 65

Query: 383 AVNPVGEAVAAATLAV 398
           A N  G   A   L+V
Sbjct: 66  ARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 19/69 (27%), Positives = 29/69 (42%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
             +G P P +TW  DG P K+   +  Y+       L +  V P ++G Y+C   N  G 
Sbjct: 17  PASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS 76

Query: 390 AVAAATLAV 398
                 + V
Sbjct: 77  INHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKE-VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
           V+  P P + W  +   +    + +++YQD  G   L I     E+AG Y+ +AVN  G 
Sbjct: 7   VSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV 66

Query: 390 AVAAATLAV 398
               A L V
Sbjct: 67  VSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGKYEIRVV 284
           + L+   +G P P V W +  K     +    +E+  +++  VI+   ++  G Y I V 
Sbjct: 13  LRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVT 72

Query: 285 NEAGEARTSGSVTI 298
           N  GE   S  V +
Sbjct: 73  NPVGEDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 239 PTPEVKWFKNGKEIVSKD-------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291
           P+   KWFKNGKEI +K+       I  K   ++L I + +    G+Y+  V ++ G   
Sbjct: 12  PSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71

Query: 292 TSGSV 296
            + +V
Sbjct: 72  VTANV 76

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. Length = 76

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 26 FTCKVEGHPLPTMTWQKDGTE--LHATEHYLITTVESVST---LEIINPTKEDIGVYTCK 80
          F C+  G+P P + WQK+G++  L + +    ++  SVS    L I N  + D+G Y C+
Sbjct: 6  FQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQ 65

Query: 81 ATNIGGVATCSANLIV 96
            N+ G     A L V
Sbjct: 66 TLNVAGSILTKAYLEV 81

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK 71
          K +   + + Q     C   G+P+P + W+K    + AT    I+   S + L+I N   
Sbjct: 7  KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE--ISM--SGAVLKIFNIQP 62

Query: 72 EDIGVYTCKATNIGGVATCSANLIV 96
          ED G Y C+A NI G     A + V
Sbjct: 63 EDEGTYECEAENIKGKDKHQARVYV 87

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 27 TCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDI----GVYTCKAT 82
           C+ +G+P PT +W ++GT     +   +T      TL I N          G Y C A+
Sbjct: 4  KCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYAS 63

Query: 83 NIGGVA 88
          N  G A
Sbjct: 64 NELGTA 69

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288
           V L  +    P PE +W+K+GK      I  K +   L IK  T+ + G Y + + N A 
Sbjct: 1   VKLPVKVAAYPPPEFQWYKDGKL-----ISGKHSQHSLQIKDVTEASAGTYTLVLWNSAA 55

Query: 289 EARTSGSVTITV 300
                 S+ + V
Sbjct: 56  GLEKRISLELIV 67

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL-----PDNGHTMEFNPT 461
            P+  +    +I     PATL     GRPTP+I W +  + +      P +   +   P+
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVL--PS 58

Query: 462 TGECVLSI--SEATPQDEAVYSVKA 484
                L +        DE VY   A
Sbjct: 59  GSLFFLRVVHGRKGRSDEGVYVCVA 83

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 38.4 bits (89), Expect = 9e-04
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 228 TVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIR 282
           T+ L     G P PEV WFKN ++I   +     +E     + L IK  T + +GKY I 
Sbjct: 18  TLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYAS-LTIKGVTSEDSGKYSIN 76

Query: 283 VVNEAG 288
           V N+ G
Sbjct: 77  VKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85
          FTC   G P P + W+ +   +  +    IT+     TL I +  + D G YTC+A N  
Sbjct: 6  FTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTR 65

Query: 86 G 86
          G
Sbjct: 66 G 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 8  RFIEKIQPVVSHQEQPAL-FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTLE 65
          + I  +  VV+  E   L  TC V G+P P + W K+  ++  +EHY +   +   ++L 
Sbjct: 2  KVIGGLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLT 61

Query: 66 IINPTKEDIGVYTCKATN 83
          I   T ED G Y+    N
Sbjct: 62 IKGVTSEDSGKYSINVKN 79

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
           V G PTP +TWS +G P++          + G   L +++V P +  +Y C A N  G  
Sbjct: 10  VEGIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNL 67

Query: 391 VAAATLAV 398
           +A A + V
Sbjct: 68  LANAHVHV 75

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 11/58 (18%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
             G P P  TW  DG P+   +                  V  E++G Y+C A N  G
Sbjct: 23  APGNPPPNYTWYKDGVPLSSSQNGFF-----------TPNVSAEDSGTYTCVASNGGG 69

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
           TL+  + G P P+  W+R     L D      ++ ++ E  L++  A P D  +Y   A 
Sbjct: 2   TLRCHIDGHPRPTYQWFRDGTP-LSDGQGN--YSVSSKERTLTLRSAGPDDSGLYYCCAH 58

Query: 184 NTFGRAECRANLVL 197
           N FG      N  L
Sbjct: 59  NAFGSVCSSQNFTL 72

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 27 TCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG 86
           C  +G P PT+TW KDG ++  +  + I+       L I +    D G Y C A N  G
Sbjct: 4  PCSAQGDPEPTITWNKDGVQVTESGKFHIS---PEGYLAIRDVGVADQGRYECVARNTIG 60

Query: 87 VATCSANL 94
           A+ S  L
Sbjct: 61 YASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIET----KDNVTK--LVIKQTTKKTTGKYEIR 282
           V LE + +  P P++ W +N  E+V  + +     +DN  +  L+IK   KK  G Y + 
Sbjct: 1   VKLECQISAIPPPKIFWKRN-NEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVS 59

Query: 283 VVNEAGEA 290
            VNEAG A
Sbjct: 60  AVNEAGVA 67

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 28 CKVEGHPLPTMTWQKDG--TELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85
          C++   P P + W+++    + +     L        TL I N  K+D G YT  A N  
Sbjct: 5  CQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEA 64

Query: 86 GVATCSANLIV 96
          GVATC A L V
Sbjct: 65 GVATCHARLDV 75

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 28 CKVEGHPLPTMTWQ-KDGTELHATEHYLITT----VESVSTLEIINPTKEDIGVYTCKAT 82
          C  EG+P PT+ W+   G       H         + S  +L I +  +ED G Y CK +
Sbjct: 5  CSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVS 64

Query: 83 N 83
          N
Sbjct: 65 N 65

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIIN 68
          I+ I P  S + + ++  C+   +P P   W+K+  ++  T + Y +        L I N
Sbjct: 9  IDTIYPEESTEGKVSV-NCRARANPFPIYKWRKNNLDIDLTNDRYSMVG----GNLVINN 63

Query: 69 PTK-EDIGVYTCKATNIGG 86
          P K +D G Y C  +NI G
Sbjct: 64 PDKYKDAGRYVCIVSNIYG 82

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk receptor TrkB

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 30 VEGHPLPTMTWQKDGTELHATEH-----YLITTVESVSTLEIINPTKEDIGVYTCKATN 83
          V+G+P PT+ W  +G  L+ +E+     ++I   E    L++ NPT  + G+YT  A N
Sbjct: 7  VKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKN 65

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. Length = 79

>gnl|CDD|143236 cd05759, Ig2_KIRREL3-like, Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 23 PALFTCKVEG-HPLPTMTWQKDGTELH-ATEHYLI----TTVESVSTLEIINPTKEDIG- 75
          P   TC+  G  P   + W +DG  L  AT    +        +VSTL  I P+  D G 
Sbjct: 1  PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTL-PITPSDHDTGR 59

Query: 76 VYTCKATN 83
           +TC+A N
Sbjct: 60 TFTCRARN 67

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 82

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
            P +        V +   VTL     G P P   W+K+G  + S                
Sbjct: 1   KPVLTPSPTV--VFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQ-------NGFFTPN 51

Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
            + + +G Y     N  G  +TS  VT+TV
Sbjct: 52  VSAEDSGTYTCVASNGGGG-KTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 333 GKPTPLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV 391
           G P P++ W+  G+ +  + + + +   T     L IS V   + G Y C AVN VG   
Sbjct: 13  GYPQPVIAWTKGGSQLSVDRRHLVLSSGT-----LRISRVALHDQGQYECQAVNIVGSQR 67

Query: 392 AAATLAV 398
             A L V
Sbjct: 68  TVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 16 VVSHQEQPAL-FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS--TLEIINPTKE 72
          VV+  E   L  TC V G P P ++W K+   L  ++HY +  VE     +L I   + E
Sbjct: 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNV-KVEQGKYASLTIKGVSSE 68

Query: 73 DIGVYTCKATN 83
          D G Y     N
Sbjct: 69 DSGKYGIVVKN 79

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTELHATEHYLITTVE-----SVS 62
          I +++   + +   A  +CK EG P+P +TW++  DG      +      +E       S
Sbjct: 5  IIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGES 64

Query: 63 TLEIINPTKEDIGVYTCKA-TNIGG 86
          +L I +    D G Y C+A + IGG
Sbjct: 65 SLHIKDVKLSDSGRYDCEAASRIGG 89

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
           VP  +TV       G PTP ++W KNGKE   +      + ++    L+++       G 
Sbjct: 6   VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 65

Query: 279 YEIRVVNEAG 288
           Y   V NE G
Sbjct: 66  YTCVVENEYG 75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
           I  DG+   L I  +T+   G  TC AEN  G    T +LS+
Sbjct: 35  IWPDGS---LEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 226 DSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNVTKLVIKQTTKKTTGKYEIRV 283
             +VTL  +  G P P + W K+G+ I S +      ++ +++ I    K    +Y    
Sbjct: 18  GQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIA 77

Query: 284 VNEAGEA 290
            N+AGE 
Sbjct: 78  ENKAGEQ 84

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 330 VVTGKPTPLVTWSHDGTPM--KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
           V +G P P +TW  D  P+   E  E    + T     L++  + PE++G Y+C   N  
Sbjct: 17  VASGNPRPDITWLKDNKPLTPTEIGESRKKKWT-----LSLKNLKPEDSGKYTCHVSNRA 71

Query: 388 GEAVAAATLAVE 399
           GE    AT  V+
Sbjct: 72  GE--INATYKVD 81

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 22/71 (30%), Positives = 29/71 (40%)

Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
           L+  V+G P P I W +  E +  +           G   L I  AT +D   Y+V A N
Sbjct: 3   LECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKN 62

Query: 185 TFGRAECRANL 195
             G   C A L
Sbjct: 63  EAGIVSCTARL 73

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 24/72 (33%), Positives = 31/72 (43%)

Query: 28 CKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV 87
          CKV G    T TW K   ++   E   I   E+ S L I    +E  G YT +  N  G 
Sbjct: 22 CKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS 81

Query: 88 ATCSANLIVLEK 99
               NL V++K
Sbjct: 82 RQAQVNLTVVDK 93

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK-LVIKQTTKKTTGKYEIRVVNEA 287
           + LE    G PTPE+ W K G E+   D    +N  K L I   +++  G+Y     N  
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGEL-PADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSL 59

Query: 288 GEARTSGSVTI 298
           G AR + SVT+
Sbjct: 60  GSARHTISVTV 70

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	579
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4222|consensus	1281		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4194|consensus	873		99.97
PHA02785	326	IL-beta-binding protein; Provisional	99.97
KOG4194|consensus	873		99.96
PHA02785	326	IL-beta-binding protein; Provisional	99.96
KOG3515|consensus	741		99.91
PHA02826	227	IL-1 receptor-like protein; Provisional	99.87
KOG3515|consensus	741		99.86
PHA02826	227	IL-1 receptor-like protein; Provisional	99.82
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.8
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.77
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.74
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.72
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.71
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.71
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.69
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.68
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.68
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.67
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.67
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.67
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.66
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.65
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.65
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.65
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.65
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.64
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.64
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.64
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.64
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.64
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.64
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.64
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.63
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.63
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.63
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.63
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.62
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.62
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.62
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.62
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.61
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.61
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.61
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.61
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.61
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.61
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.61
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.6
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.6
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.6
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.6
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.59
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.59
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.59
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.59
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.59
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.58
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.58
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.58
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.58
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.57
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.57
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.57
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.57
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.57
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.57
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.57
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.56
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.56
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.56
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.56
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.55
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.55
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.55
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.55
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.55
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.55
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.55
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.54
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.54
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.54
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.54
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.54
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.54
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.54
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.54
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.53
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.53
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.53
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.52
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.52
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.52
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.52
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.52
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.52
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.52
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.51
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.51
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.51
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.51
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.51
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.51
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.51
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.5
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.5
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.5
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.5
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.5
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.49
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.49
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.49
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.49
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.49
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.48
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.48
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.48
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.48
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.48
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.48
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.48
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.48
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.48
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.48
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.48
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.47
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.47
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.47
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.47
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.47
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.46
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.46
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.46
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.46
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.46
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.46
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.45
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.44
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.44
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.44
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.43
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.43
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.42
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.42
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.42
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.42
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.42
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.41
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.41
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.4
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.4
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.4
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.39
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.38
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.38
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.37
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.37
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.37
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.37
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.37
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.37
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.36
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.36
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.36
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.35
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.35
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.34
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.34
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.32
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.32
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.32
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.31
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.31
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.3
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.3
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.3
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.29
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.28
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.27
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.24
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.24
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.23
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.23
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.23
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.22
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.21
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.21
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.19
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.19
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.19
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.17
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.16
smart00409	86	IG Immunoglobulin.	99.15
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.15
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.14
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.13
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.13
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.12
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.12
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.11
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.1
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.07
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.07
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.07
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.06
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.05
smart00409	86	IG Immunoglobulin.	99.04
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.04
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.03
PHA03376	221	BARF1; Provisional	99.03
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.03
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.01
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.98
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.98
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.97
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.97
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.95
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.91
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.89
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.88
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.87
PHA03376	221	BARF1; Provisional	98.85
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.85
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.85
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.84
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.83
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.81
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.81
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.8
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.8
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.8
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.79
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.79
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.77
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.76
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.75
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.74
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.74
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.73
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.73
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.72
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.72
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.72
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.7
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.7
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.7
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.7
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.7
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.68
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.68
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.66
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.66
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.65
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.63
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.63
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.62
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.61
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.6
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.6
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.58
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.57
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.57
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.57
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.56
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.55
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.53
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.53
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.51
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.51
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.51
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.51
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.49
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.49
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.49
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.47
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.46
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.46
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.46
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.45
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.44
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.43
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.42
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.4
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.4
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.39
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.38
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.37
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.37
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.36
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.36
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.34
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.34
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.34
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.33
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.32
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.3
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.3
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.29
PHA03270	466	envelope glycoprotein C; Provisional	98.28
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.26
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.25
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.24
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.24
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.23
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.22
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.22
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.21
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.2
smart00407	75	IGc1 Immunoglobulin C-Type.	98.2
PHA03270	466	envelope glycoprotein C; Provisional	98.16
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.14
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.1
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.1
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.1
PHA03271	490	envelope glycoprotein C; Provisional	98.1
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.09
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.09
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.08
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.08
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.08
PHA03269	566	envelope glycoprotein C; Provisional	98.07
PHA03273	486	envelope glycoprotein C; Provisional	98.06
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.06
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.05
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.04
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.02
smart00407	75	IGc1 Immunoglobulin C-Type.	98.01
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.01
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.0
PHA03273	486	envelope glycoprotein C; Provisional	98.0
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.0
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.0
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.99
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.98
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.98
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.98
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.98
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.96
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.95
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.92
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.9
smart00406	81	IGv Immunoglobulin V-Type.	97.89
smart00406	81	IGv Immunoglobulin V-Type.	97.89
PHA03271	490	envelope glycoprotein C; Provisional	97.88
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.87
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.85
PHA03269	566	envelope glycoprotein C; Provisional	97.82
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.8
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.76
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.71
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.7
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.7
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.69
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.69
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.64
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.61
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.59
KOG1480|consensus	909		97.54
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.53
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.5
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.49
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.49
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.47
PHA02633	63	hypothetical protein; Provisional	97.4
KOG0613|consensus	1205		97.31
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.31
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.25
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.19
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.16
KOG0613|consensus	1205		97.11
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.1
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.09
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.07
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.99
PHA02982	251	hypothetical protein; Provisional	96.94
KOG1480|consensus	909		96.88
PHA02633	63	hypothetical protein; Provisional	96.85
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.73
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.44
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.43
PHA02982	251	hypothetical protein; Provisional	95.97
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.95
KOG4597|consensus	560		95.25
KOG4597|consensus	560		95.16
PHA03042	286	CD47-like protein; Provisional	95.02
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	94.67
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.63
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.32
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	94.25
PHA02865	338	MHC-like TNF binding protein; Provisional	94.24
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.23
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	94.14
PHA02914	500	Immunoglobulin-like domain protein; Provisional	94.03
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	93.98
PHA03042	286	CD47-like protein; Provisional	93.97
PHA03283	542	envelope glycoprotein E; Provisional	93.87
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	93.84
PHA03189	348	UL14 tegument protein; Provisional	93.83
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.4
PHA03052	69	Hypothetical protein; Provisional	92.06
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	92.04
PHA03281	642	envelope glycoprotein E; Provisional	91.8
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	91.43
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	89.87
PHA02865	338	MHC-like TNF binding protein; Provisional	89.28
PHA03282	540	envelope glycoprotein E; Provisional	89.25
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	89.11
PHA03282	540	envelope glycoprotein E; Provisional	87.87
PHA03189	348	UL14 tegument protein; Provisional	85.64
PHA03240	258	envelope glycoprotein M; Provisional	85.58
PRK14081	667	triple tyrosine motif-containing protein; Provisio	85.03
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	84.5
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	84.25
PHA03052	69	Hypothetical protein; Provisional	83.93
PHA03283	542	envelope glycoprotein E; Provisional	83.75
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	80.9
PHA03286	492	envelope glycoprotein E; Provisional	80.5

>KOG3513|consensus

Probab=100.00  E-value=1.3e-60  Score=470.66  Aligned_cols=494  Identities=27%  Similarity=0.401  Sum_probs=380.6

Q ss_pred             CccccccCceeee-CCCC--EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy16852          7 PRFIEKIQPVVSH-QEQP--ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT-KEDIGVYTCKAT   82 (579)
Q Consensus         7 p~~~~~p~~~~v~-~G~~--~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~   82 (579)
                      |.|..+|.++.+. +-+.  +.|.|.+.|+|.|+++|+|||..+...+.......  .++|.|.+.. ..|.|.|+|.|+
T Consensus        40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~--~G~lvI~~p~~~~d~G~YqC~As  117 (1051)
T KOG3513|consen   40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL--GGTLVITNPDAALDQGIYQCFAS  117 (1051)
T ss_pred             ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeee--cCceEecCCcchhhcceeEEEee
Confidence            8888888864443 3333  99999999999999999999999987665555554  4678888777 889999999999


Q ss_pred             cCCeeeEE-EEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEE-ccCCCCceEEEcC
Q psy16852         83 NIGGVATC-SANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEE-ILPDNGHTMEFNP  158 (579)
Q Consensus        83 ~~~g~~~~-~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~-~~~~~~~~~~~~~  158 (579)
                      |..|...+ .+.+..-      ..+.|. .....+.+.+|+.+.|.|.. .++|.+.+.|..+..+ +...+..++... 
T Consensus       118 N~~Gta~S~~~~l~~~------~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~-  190 (1051)
T KOG3513|consen  118 NKLGTAVSREARLQFG------FIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQ-  190 (1051)
T ss_pred             cccceeeccceeeccc------ccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEec-
Confidence            99997765 3444432      233444 35567889999999999986 5678899999876544 222232233332 


Q ss_pred             CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE---EEEEEEeeccccCCCCccCCCeEeccC-CceeeCCCCeEEEEEE
Q psy16852        159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAEC---RANLVLRKATTIDKPRVLEAPTIVRPL-QALLVPKDSTVTLEAE  234 (579)
Q Consensus       159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~  234 (579)
                        ..+.|.|.++..+|.+.|.|.+.+.......   ...+.+...    ......+|.+.... .......|+.+.|.|.
T Consensus       191 --~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~----~~~~~~~P~i~~~~p~~~~a~~G~~v~LECf  264 (1051)
T KOG3513|consen  191 --ENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSN----NVMREYAPKILVPFPETETALKGQSVKLECF  264 (1051)
T ss_pred             --ccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccc----ccccccCCccccCCCCcccccCCCeEEEEEE
Confidence              2357999999999999999999875432221   222332111    11122344444433 3566888999999999


Q ss_pred             EEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeec
Q psy16852        235 YTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVES  314 (579)
Q Consensus       235 ~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~  314 (579)
                      +.|+|-|.+.|.|.+.............+.+|.|.+++.+|+|.|.|.|.|..|.......+.|...+.-...+. ....
T Consensus       265 A~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~-d~~~  343 (1051)
T KOG3513|consen  265 ALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQ-DTEA  343 (1051)
T ss_pred             ecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccc-eeEe
Confidence            999999999999987754444445566678999999999999999999999999777777777664432211111 1222


Q ss_pred             cccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCe---EEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEE
Q psy16852        315 HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE---VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV  391 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  391 (579)
                      .....+.|     .|.+.|.|.|.++|.+||.++....+   ..+..   +  .|.|.++...|+|+|+|.|+|..|...
T Consensus       344 ~~gs~v~~-----eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~---g--~L~is~v~~~dsg~YQC~A~Nk~G~i~  413 (1051)
T KOG3513|consen  344 DTGSNVTL-----ECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD---G--TLIISNVQESDSGVYQCIAENKYGTIY  413 (1051)
T ss_pred             cCCCCeEE-----EEEecCCCCCceEEeeCCeecCccCCCcceEEeC---C--EEEEEecccccCeEEEeeeecccceEe
Confidence            33334444     48899999999999999999987766   44432   2  899999999999999999999999999


Q ss_pred             EEEEEEEEecccCCCCCeeecCCCc--eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEE
Q psy16852        392 AAATLAVEEKEESGEAPKFTKPLKP--VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSI  469 (579)
Q Consensus       392 ~~~~l~v~~~~~~~~~p~~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i  469 (579)
                      +++.|.|..     .+|.+...+..  ..+..|..+.|.|.+.+.|.|.++|.+++..+..+.|+.+.   ++|+     
T Consensus       414 anA~L~V~a-----~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~---edGt-----  480 (1051)
T KOG3513|consen  414 ANAELKVLA-----SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRIL---EDGT-----  480 (1051)
T ss_pred             eeeEEEEEc-----cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEEC---CCCc-----
Confidence            999999998     46777765544  46888999999999999999999999999876667666653   3333     


Q ss_pred             ccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCcccc
Q psy16852        470 SEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK  549 (579)
Q Consensus       470 ~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~  549 (579)
                                                    |.|.+++.+|+|.|+|.|.|.+|.+..++.|.|         .++++|..
T Consensus       481 ------------------------------L~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~V---------kd~tri~~  521 (1051)
T KOG3513|consen  481 ------------------------------LEISNVTRSDAGKYTCVAENKLGKAESTGNLIV---------KDATRITL  521 (1051)
T ss_pred             ------------------------------EEecccCcccCcEEEEEEEcccCccceEEEEEE---------ecCceEEe
Confidence                                          999999999999999999999999999999996         49999999


Q ss_pred             CCCceEEecCCcEEEEEEeccceeecccc
Q psy16852        550 TPETAKVMDGQSVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       550 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~  578 (579)
                      .|.+..+..|++++|+|.+.+|+.++++|
T Consensus       522 ~P~~~~v~~g~~v~l~Ce~shD~~ld~~f  550 (1051)
T KOG3513|consen  522 APSNTDVKVGESVTLTCEASHDPSLDITF  550 (1051)
T ss_pred             ccchhhhccCceEEEEeecccCCCcceEE
Confidence            99999999999999999999999998876

>KOG3513|consensus

Probab=100.00  E-value=1.1e-51  Score=407.80  Aligned_cols=462  Identities=22%  Similarity=0.282  Sum_probs=351.5

Q ss_pred             cccCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee-
Q psy16852         11 EKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA-   88 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-   88 (579)
                      ...+.+.+.+|+.+.|.|... +.|.+.+.|..+...-......+.......+.|.|.++..+|.+.|.|.+.+..... 
T Consensus       141 e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~  220 (1051)
T KOG3513|consen  141 EERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTI  220 (1051)
T ss_pred             ccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhccc
Confidence            357789999999999999973 456789999887654332322233344456899999999999999999998743211 


Q ss_pred             --EEEEEEEEEec-ccCCCCCceec-CCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEE
Q psy16852         89 --TCSANLIVLEK-EESGEAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV  164 (579)
Q Consensus        89 --~~~~~~~v~~~-~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  164 (579)
                        ...+.|++... .....+|.+.. .+.......|+.+.|.|.+-|+|-|+|.|.|.++....+ +....    +....
T Consensus       221 v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~-r~~~~----~~~~v  295 (1051)
T KOG3513|consen  221 VQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR-RATYS----NYGKV  295 (1051)
T ss_pred             ccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc-ceeee----ccccE
Confidence              11233443211 11123444444 333667788999999999999999999999988853322 11111    22358


Q ss_pred             EEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEE
Q psy16852        165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK  244 (579)
Q Consensus       165 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  244 (579)
                      |.|.+++.+|+|.|+|.|.|..|.......+.+.           .+|.+...+++..+..|++++|.|.+.|.|.|.++
T Consensus       296 L~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~-----------a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~  364 (1051)
T KOG3513|consen  296 LKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY-----------APPYWLQKPQDTEADTGSNVTLECKASGKPNPTVK  364 (1051)
T ss_pred             EEecccCcCCCeEEEEEEecccccceeeEEEEEe-----------cCchhhcccceeEecCCCCeEEEEEecCCCCCceE
Confidence            9999999999999999999999987777777765           78888889999999999999999999999999999


Q ss_pred             EEECCEEeccCce--EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceee
Q psy16852        245 WFKNGKEIVSKDI--ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQW  322 (579)
Q Consensus       245 W~~~~~~i~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~  322 (579)
                      |++||.++.....  ........|.|.+++..|+|.|.|.|.|..|....++.|.|....+.... ..  ..........
T Consensus       365 WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~-~p--~~~~~~a~~g  441 (1051)
T KOG3513|consen  365 WLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPL-NP--VERKVMAVVG  441 (1051)
T ss_pred             EeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCC-Cc--cceEEEEEeC
Confidence            9999999985541  23344568999999999999999999999999999999998744221111 00  0000011112


Q ss_pred             eecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecc
Q psy16852        323 FIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE  402 (579)
Q Consensus       323 ~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  402 (579)
                      ....+.|...+.|.+.++|.+++..+..+.++.+..++    +|.|.+++.+|+|.|+|.|+|..|.......|.|..  
T Consensus       442 ~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd--  515 (1051)
T KOG3513|consen  442 GTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG----TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD--  515 (1051)
T ss_pred             CeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC----cEEecccCcccCcEEEEEEEcccCccceEEEEEEec--
Confidence            22334588899999999999999977788887776654    799999999999999999999999999999999997  


Q ss_pred             cCCCCCeeecCCCceeeecCCCeEEEEEEEeeC--CCeEEEeeCCEEcCCCC--CeeEEEcCCCCeEEEEEccccCCCce
Q psy16852        403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRGKEEILPDN--GHTMEFNPTTGECVLSISEATPQDEA  478 (579)
Q Consensus       403 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g  478 (579)
                          +++++..+.+..+..|+.++|.|.+.-.+  ...|.|.++|..+....  .+....                    
T Consensus       516 ----~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~--------------------  571 (1051)
T KOG3513|consen  516 ----ATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEIN--------------------  571 (1051)
T ss_pred             ----CceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEe--------------------
Confidence                88899889999999999999999987444  44899999999875332  111111                    


Q ss_pred             eEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeC
Q psy16852        479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPE  535 (579)
Q Consensus       479 ~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  535 (579)
                                   ...+. +.|+|.+++..|+|.|.|.|.-...+..+.+.+.|+.+
T Consensus       572 -------------~~~~~-g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gp  614 (1051)
T KOG3513|consen  572 -------------DGSDS-GRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGP  614 (1051)
T ss_pred             -------------CCcCc-cceEEEeeccccCceEEEEEEEeecchhcccceEEecC
Confidence                         01111 45999999999999999999998888889999998743

>KOG4222|consensus

Probab=100.00  E-value=2.5e-44  Score=351.38  Aligned_cols=469  Identities=24%  Similarity=0.366  Sum_probs=354.8

Q ss_pred             CCcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEc-----CCCCCCCE
Q psy16852          1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEII-----NPTKEDIG   75 (579)
Q Consensus         1 ~~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~-----~~~~~d~G   75 (579)
                      +++.++|+++.+|.++.+..|++++|.|.+.|.|.|+|+|||+|+.........-++.-..++|.+.     .....|.|
T Consensus        26 r~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G  105 (1281)
T KOG4222|consen   26 RAQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHG  105 (1281)
T ss_pred             ccccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCc
Confidence            3578999999999999999999999999999999999999999975543221111111111223222     22244999


Q ss_pred             EEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCce
Q psy16852         76 VYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHT  153 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~  153 (579)
                      .|+|.+.|..|...+ ...+.+...     .-.|...+..+.+..|+.+.|.|.- .++|.+.+.|.|++..+.......
T Consensus       106 ~y~cvasn~~g~avSr~a~L~vavl-----rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~  180 (1281)
T KOG4222|consen  106 VYSCVASNRLGEAVSRGASLIVAVL-----RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPI  180 (1281)
T ss_pred             eeEeeecCccceeeecCceEEEEEe-----chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccccee
Confidence            999999999886544 233333221     3356666677788899999999985 778899999999999876332222


Q ss_pred             EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEE
Q psy16852        154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE  232 (579)
Q Consensus       154 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~  232 (579)
                      +..-   ..+.|.|.+++.+|+|.|.|.+.|..|...+ .+.+.+.           .+|.+...+....+..|..+.+.
T Consensus       181 ~~li---sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-----------e~P~f~~rp~~~~v~~g~~~~f~  246 (1281)
T KOG4222|consen  181 IALI---SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-----------EKPWFWKRPKDLAVLVGAAAEFD  246 (1281)
T ss_pred             EEEe---cCCcEEEeccccCCCceeeeeecccccccccccceeeec-----------cCCccccccccceeecccccccc
Confidence            2111   1247999999999999999999999987654 3455554           78899988888889999999999


Q ss_pred             EEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeee
Q psy16852        233 AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRV  312 (579)
Q Consensus       233 C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~  312 (579)
                      |.+.|.|.+.+.|.+++..++...........+|.|.+++..|.|.|.|.+.|..|...++..++|...+.......-. 
T Consensus       247 c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq-  325 (1281)
T KOG4222|consen  247 CRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQ-  325 (1281)
T ss_pred             cccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCcc-
Confidence            9999999999999998888887776666676789999999999999999999999999999999998665432221111 


Q ss_pred             eccccCceeeeecCeeEEEeeeCCCeEEEEECCEEcc--------CCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEE
Q psy16852        313 ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK--------EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV  384 (579)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  384 (579)
                           .........++|.+.|+|+|.+.|.+.|..-.        .+.+..+...  +  +|.|+++...|.|.|.|...
T Consensus       326 -----~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~--g--~L~it~v~~~d~g~Yvcq~~  396 (1281)
T KOG4222|consen  326 -----KVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPT--G--TLTITNVRQSDEGYYVCQTQ  396 (1281)
T ss_pred             -----ccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCC--C--CcccccccccccceEeeccc
Confidence                 11111123456889999999999999875321        1222333222  2  79999999999999999998


Q ss_pred             cCceeEEEEEEEEEEecccC-CCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCC
Q psy16852        385 NPVGEAVAAATLAVEEKEES-GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG  463 (579)
Q Consensus       385 n~~g~~~~~~~l~v~~~~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~  463 (579)
                      +..+.......+.+...... ..+|.+...+.+++..++..+.|.|.+.|.|.|.+.|+++|..+.....+...      
T Consensus       397 ~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~------  470 (1281)
T KOG4222|consen  397 TSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQ------  470 (1281)
T ss_pred             ccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccce------
Confidence            88887776666666555444 45677777788888889999999999999999999999998876543322111      


Q ss_pred             eEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeC
Q psy16852        464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPE  535 (579)
Q Consensus       464 ~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  535 (579)
                                                     ...+.|+|.++...|.|.|+|.|.+..|+...++.|.|..+
T Consensus       471 -------------------------------~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~  511 (1281)
T KOG4222|consen  471 -------------------------------QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKA  511 (1281)
T ss_pred             -------------------------------eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhc
Confidence                                           12345999999999999999999999999999999998644

>KOG4221|consensus

Probab=100.00  E-value=9.3e-40  Score=321.47  Aligned_cols=458  Identities=22%  Similarity=0.329  Sum_probs=343.7

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      .+.|...+.+..+..|+++.|.|.+.+.+.+.+.|.+|..++..++++...   .++.|.|.++...|.|.|+|.+++..
T Consensus       140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~l---psG~L~I~~~qp~d~g~yrc~vt~g~  216 (1381)
T KOG4221|consen  140 LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVL---PSGALEISGLQPSDTGEYRCVVTGGA  216 (1381)
T ss_pred             cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEc---CCCcEEecccccCCCceEEEEEecCC
Confidence            456888999999999999999999999888899999999988877744332   34689999999999999999999865


Q ss_pred             e-eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEE
Q psy16852         86 G-VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV  164 (579)
Q Consensus        86 g-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  164 (579)
                      . ..+..+.++|...+.......|...+....+.+|+++.|.|.+.+.|.+.|.|.+++..+..+. .++...   +...
T Consensus       217 ~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~---g~~s  292 (1381)
T KOG4221|consen  217 SQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLV---GGSS  292 (1381)
T ss_pred             cCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEe---cccc
Confidence            3 2345677888754444444456777888889999999999999999999999999999887655 444332   3457


Q ss_pred             EEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEE
Q psy16852        165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK  244 (579)
Q Consensus       165 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  244 (579)
                      |.|.+++..|+|.|+|+|.|.......++.+.|.           .+|.+...+....+.++..+.|.|.+.|.|.+.+.
T Consensus       293 lliS~a~~~dSg~YtC~Atn~~D~idasaev~V~-----------a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~  361 (1381)
T KOG4221|consen  293 LLISNATDDDSGKYTCRATNTNDSIDASAEVTVL-----------APPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVR  361 (1381)
T ss_pred             eEEeccccccCceEEEEecCCCcccccceEEEEE-----------cCCCCCCCCcceeeeeccceeEeCCCCCCCcceEE
Confidence            9999999999999999999977777777777776           67888888888889999999999999999999999


Q ss_pred             EEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEecc---------ceeeeeeeeeec
Q psy16852        245 WFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE---------AETVMMDVRVES  314 (579)
Q Consensus       245 W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~---------~~~~~l~~~~~~  314 (579)
                      |+|||..+..+. .....+.. |.|.-+...|.|.|.|.+.|..|.....+.+.+...+         ..+..+......
T Consensus       362 w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~  440 (1381)
T KOG4221|consen  362 WYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVS  440 (1381)
T ss_pred             EEecCcccCcccceEecCCCC-cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceeccccc
Confidence            999998877665 34444444 8899999999999999999999998877777554321         111122222233


Q ss_pred             cccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEE
Q psy16852        315 HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA  394 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  394 (579)
                      .....++|.   .+| ..+.+.+.++|+......... +... ..+.+ ..+.+.++...-...++|.|.|..|....+.
T Consensus       441 srfi~~tw~---~p~-~~~g~i~~~~v~~~~~~~~re-r~~~-tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~  513 (1381)
T KOG4221|consen  441 SRFIQLTWR---PPA-QISGNISTYTVFYKVEGDVRE-RLQN-TSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSA  513 (1381)
T ss_pred             ceeEEEeec---Ccc-ccCCCcceEEEEEecCCchhh-hhee-ccCCc-eEEEeeecccceeEEEEEeccCcccCCccCC
Confidence            334455555   456 566677788887543322111 1111 11222 4677777777666677777889999999999


Q ss_pred             EEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC----eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEc
Q psy16852        395 TLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP----SICWYRGKEEILPDNGHTMEFNPTTGECVLSIS  470 (579)
Q Consensus       395 ~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~----~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~  470 (579)
                      .|.|...++   +|..        ...+..-.++|.+.+.|++    .++||+...... +....               
T Consensus       514 pLkV~t~pE---gp~~--------~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~-~~~~~---------------  566 (1381)
T KOG4221|consen  514 PLKVTTQPE---GPVQ--------LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED-DTGKE---------------  566 (1381)
T ss_pred             ceEEecCCC---CCcc--------ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC-CCCce---------------
Confidence            999998654   2211        3445666788999988887    899999655443 11111               


Q ss_pred             cccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCC
Q psy16852        471 EATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPES  536 (579)
Q Consensus       471 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  536 (579)
                                          +..+.+...++|..+.+.+...|+|+|.|.+|....+..+.|+...
T Consensus       567 --------------------~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls  612 (1381)
T KOG4221|consen  567 --------------------LRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS  612 (1381)
T ss_pred             --------------------EEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc
Confidence                                2223345568899999999999999999999999999998887543

>KOG4221|consensus

Probab=100.00  E-value=6.6e-39  Score=315.51  Aligned_cols=491  Identities=21%  Similarity=0.292  Sum_probs=337.4

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCC-----CCCEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK-----EDIGV   76 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~-----~d~G~   76 (579)
                      +.+-.|+.+|.+.  .+|..+.|.|.+...  +.+.|.|.+||..+......+.. .-.+++|.|.++..     -|+|.
T Consensus        39 ~~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~-~LsNgSl~i~~v~~~kh~~~~eg~  115 (1381)
T KOG4221|consen   39 NTPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQ-LLSNGSLYISSVLASKHNKVDEGV  115 (1381)
T ss_pred             cCcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHh-hccCCceeEeeecccccccccCce
Confidence            4566788888855  999999999997543  35689999999987654321111 12346788887766     78999


Q ss_pred             EEEEEEcC-Ceee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceE
Q psy16852         77 YTCKATNI-GGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM  154 (579)
Q Consensus        77 Y~C~~~~~-~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~  154 (579)
                      |+|.|+-. .|.. +..+.+.+.      ..+.|...+.+..+..|+++.|.|.+.+.|.+.+.|.++..++..+.+.  
T Consensus       116 Yqc~atv~~~gsi~Sr~a~v~~a------~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~--  187 (1381)
T KOG4221|consen  116 YQCLATVEDVGSILSRTAKVALA------GLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRV--  187 (1381)
T ss_pred             EEEEEEccccceeecceEEEEec------ccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcE--
Confidence            99999865 3433 334555553      3557777778889999999999999998888899999999988776633  


Q ss_pred             EEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEE
Q psy16852        155 EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA  233 (579)
Q Consensus       155 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C  233 (579)
                      ...+.   +.|.|.++...|.|.|+|.+.+..-.. ...+.+++....     .+.....|...+....+.+|+.+.|.|
T Consensus       188 i~lps---G~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~-----~~~~~~~fl~~p~~~~v~~g~~v~leC  259 (1381)
T KOG4221|consen  188 IVLPS---GALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDP-----GALNKLVFLDEPSNAVVVEGDDVVLEC  259 (1381)
T ss_pred             EEcCC---CcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCc-----ccccceeeecCCCccccccCCcEEEEE
Confidence            33322   369999999999999999999875433 334555554211     122223355566677789999999999


Q ss_pred             EEEccCCCeEEEEECCEEeccCceE-EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeee
Q psy16852        234 EYTGTPTPEVKWFKNGKEIVSKDIE-TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRV  312 (579)
Q Consensus       234 ~~~~~p~~~v~W~~~~~~i~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~  312 (579)
                      .+.+.|.|.|.|.+||..|...... .......|.|.+++..|+|.|+|+|.|......+++.+.|.+.++-.-.. -..
T Consensus       260 vvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p-~~l  338 (1381)
T KOG4221|consen  260 VVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAP-TTL  338 (1381)
T ss_pred             EecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCC-cce
Confidence            9999999999999999998776522 23445679999999999999999999976667778888887664422111 111


Q ss_pred             eccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEE
Q psy16852        313 ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA  392 (579)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  392 (579)
                      .......+.|     .|.+.|.|.+.+.|+|+|..+..+..+.+....    .|.|..+-..|.|.|+|.++|..|....
T Consensus       339 ~A~e~~die~-----ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~----~lrIlgi~~sdeg~yQcvaen~~G~a~a  409 (1381)
T KOG4221|consen  339 VAHESMDIEF-----ECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGG----NLRILGIVKSDEGFYQCVAENDAGSAQA  409 (1381)
T ss_pred             eeeeccceeE-----eCCCCCCCcceEEEEecCcccCcccceEecCCC----CcEEEEEecccchhhhhhhccCcccccc
Confidence            2222334443     478899999999999999998887766664433    2777777889999999999999999998


Q ss_pred             EEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEE-----eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEE
Q psy16852        393 AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL  467 (579)
Q Consensus       393 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l  467 (579)
                      ...+.+...+.....+.+-..+....+..-+..-+.|...     +.+.+.+.|++........   +.           
T Consensus       410 ~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~re---r~-----------  475 (1381)
T KOG4221|consen  410 AAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRE---RL-----------  475 (1381)
T ss_pred             hhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhh---hh-----------
Confidence            8888665543222222222233333344444445555543     3445577887743222111   00           


Q ss_pred             EEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCcc
Q psy16852        468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRF  547 (579)
Q Consensus       468 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~  547 (579)
                                             +...+..-..++.++...-...++|.|.|..|....+..|+|...+|          
T Consensus       476 -----------------------~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE----------  522 (1381)
T KOG4221|consen  476 -----------------------QNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE----------  522 (1381)
T ss_pred             -----------------------eeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC----------
Confidence                                   11111112355555555555667778899999999999999875433          


Q ss_pred             ccCCCceEEecCCcEEEEEEeccceee
Q psy16852        548 IKTPETAKVMDGQSVLFTAQVGYSERL  574 (579)
Q Consensus       548 ~~~~~~~~~~~g~~~~l~C~~~~~~~~  574 (579)
                         +... +..+...-++|.|...||.
T Consensus       523 ---gp~~-~~a~ats~~ti~v~WepP~  545 (1381)
T KOG4221|consen  523 ---GPVQ-LQAYATSPTTILVTWEPPP  545 (1381)
T ss_pred             ---CCcc-ccccccCcceEEEEecCCC
Confidence               1222 4556677777888665554

>KOG4222|consensus

Probab=100.00  E-value=1.2e-35  Score=291.11  Aligned_cols=417  Identities=24%  Similarity=0.384  Sum_probs=298.6

Q ss_pred             CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC-eEEEEECcC--CCCCCeEEEE
Q psy16852        104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG-ECVLSISEA--TPQDEAVYSV  180 (579)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~--~~~d~G~Y~C  180 (579)
                      .+|.++..+....+..|+.++|.|.+.|.|+++|+|||+|............+...++ ..-|.+..-  ...|.|.|+|
T Consensus        30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c  109 (1281)
T KOG4222|consen   30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC  109 (1281)
T ss_pred             CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence            4677777888888889999999999999999999999999765544332222222222 222222211  1238999999


Q ss_pred             EEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEE-EEccCCCeEEEEECCEEeccCc--
Q psy16852        181 KAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE-YTGTPTPEVKWFKNGKEIVSKD--  256 (579)
Q Consensus       181 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~~i~~~~--  256 (579)
                      +++|..|...+ ...+.+..          ..-.+...+.+..+..|+.+.|.|. ..+.|.+.+.|.|+|+++....  
T Consensus       110 vasn~~g~avSr~a~L~vav----------lrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~  179 (1281)
T KOG4222|consen  110 VASNRLGEAVSRGASLIVAV----------LRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVP  179 (1281)
T ss_pred             eecCccceeeecCceEEEEE----------echhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccce
Confidence            99999987644 33444331          2334445556667888999999995 4578999999999999987333  


Q ss_pred             eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEE-EEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeC
Q psy16852        257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART-SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKP  335 (579)
Q Consensus       257 ~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~-~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p  335 (579)
                      ......+..|.|.++...|+|.|.|+++|..|.... .+.+.|.  +.+.+.-....    ............|.+.|.|
T Consensus       180 ~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~--e~P~f~~rp~~----~~v~~g~~~~f~c~v~GdP  253 (1281)
T KOG4222|consen  180 IIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ--EKPWFWKRPKD----LAVLVGAAAEFDCRVGGDP  253 (1281)
T ss_pred             eEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec--cCCcccccccc----ceeecccccccccccCCCC
Confidence            444455567999999999999999999999987653 3455554  32222211110    0011111133458899999


Q ss_pred             CCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCC
Q psy16852        336 TPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK  415 (579)
Q Consensus       336 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~  415 (579)
                      .|.+.|.+++..+.... ..+..+..   +|.|.++...|.|.|.|.+.|..|.......+.|+.      +|.|...+.
T Consensus       254 ~P~Vrwkk~~~~~P~~r-y~i~~d~q---tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a------pP~f~kkp~  323 (1281)
T KOG4222|consen  254 QPTVRWKKDDPSLPRSR-YSILDDTQ---TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA------PPSFGKKPR  323 (1281)
T ss_pred             CCceeeeccCCCCCccc-eeeeeccc---cccccccCCCcccceeeeccccccccccccceEEec------CcccccccC
Confidence            99999999777666443 33333322   799999999999999999999999999999999997      888888888


Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEc-CCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEI-LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      +..+..|..++|.|.+.|.|.|.+.|.+.|... ....                 .......           ...+...
T Consensus       324 dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~-----------------~p~~~~~-----------r~svs~~  375 (1281)
T KOG4222|consen  324 DQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSA-----------------SPPSSNG-----------RGSVSPT  375 (1281)
T ss_pred             ccccccCceEEeeeecCCCCCcceEEeccCcceecccC-----------------CCCCcCc-----------cceecCC
Confidence            888999999999999999999999999976432 1100                 0111111           1112122


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceee
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERL  574 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~  574 (579)
                      +   +|+|.+++..|.|.|.|...+..|.......+.+...  ..+-.-+|.|...+.+.+.-+|+.+.|.|.+.++|.+
T Consensus       376 g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~--~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p  450 (1281)
T KOG4222|consen  376 G---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV--LTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTP  450 (1281)
T ss_pred             C---CcccccccccccceEeecccccccccccceeEEEEee--eccCCCCceeeecccccccccCcccccChhhhCCCCC
Confidence            2   5999999999999999999999888777666665421  1111345556677999999999999999999999999


Q ss_pred             ccccC
Q psy16852        575 EIPLI  579 (579)
Q Consensus       575 ~~~~~  579 (579)
                      .++|.
T Consensus       451 ~i~wl  455 (1281)
T KOG4222|consen  451 NISWL  455 (1281)
T ss_pred             Cchhh
Confidence            99873

>KOG4194|consensus

Probab=99.97  E-value=1.3e-30  Score=239.51  Aligned_cols=280  Identities=25%  Similarity=0.403  Sum_probs=225.6

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEe--eCCCeeEEEECCEEecCC-----CCEEE--------EEeCCEEEEEEc
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEG--HPLPTMTWQKDGTELHAT-----EHYLI--------TTVESVSTLEII   67 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~--~~~~~v~W~~~g~~~~~~-----~~~~~--------~~~~~~~~L~i~   67 (579)
                      ...+|++..+|+.+....|+.++|+|.+.+  ..+-++.|.++++....-     -.+..        ........|++.
T Consensus       500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~  579 (873)
T KOG4194|consen  500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD  579 (873)
T ss_pred             CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence            357899999999999999999999999965  233489999987633211     00000        001124689999


Q ss_pred             CCCCCCCEEEEEEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEE-
Q psy16852         68 NPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE-  145 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~-  145 (579)
                      +++-.|+|.|+|.++|..|+.. ..++++|.      ..|.|...+.+..+..|+.+.|.|.++|.|.|+|.|.|+++. 
T Consensus       580 nVt~td~grYQCVvtN~FGStysqk~KltV~------~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd  653 (873)
T KOG4194|consen  580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN------QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD  653 (873)
T ss_pred             eeecccCceEEEEEecccCcchhheeEEEee------ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence            9999999999999999998664 46788885      477899999999999999999999999999999999998876 


Q ss_pred             ccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCC
Q psy16852        146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPK  225 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~  225 (579)
                      .+.....++...++++  .+.|.+++.+|+|.|+|.|.|..|.....+.++|.           +.|.+..+..+..+..
T Consensus       654 FPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~-----------e~p~f~~PL~~~~V~~  720 (873)
T KOG4194|consen  654 FPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL-----------ETPSFSIPLEDQLVVV  720 (873)
T ss_pred             CchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEe-----------cCCcccccccceEEEe
Confidence            4433444555444444  68999999999999999999999999999998876           6778888888888999


Q ss_pred             CCeEEEEEEEEccCC-CeEEEEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852        226 DSTVTLEAEYTGTPT-PEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA  301 (579)
Q Consensus       226 g~~~~l~C~~~~~p~-~~v~W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~  301 (579)
                      |+++.|.|.+.+.|+ |.+.|+|+++++.-.. ....++..-|.+.+...+|+|.|+|...+..|.......+.+...
T Consensus       721 get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~  798 (873)
T KOG4194|consen  721 GETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQK  798 (873)
T ss_pred             cceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeec
Confidence            999999999999877 8999999999886554 344566677889999999999999999999887666555554433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.97  E-value=2.7e-28  Score=225.82  Aligned_cols=255  Identities=17%  Similarity=0.337  Sum_probs=178.1

Q ss_pred             CceeeeCCCCEEEEEEE-----EeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852         14 QPVVSHQEQPALFTCKV-----EGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~-----~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      ....+.+|+++.|.|.+     .|.|.++++|||+|....   +  .........|.|.++..+|+|.|+|.+.|..|..
T Consensus        34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~--~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~  108 (326)
T PHA02785         34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---R--IIPIDNGSNMLILNPTQSDSGIYICITKNETYCD  108 (326)
T ss_pred             chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---e--EEEccCCceEEEcccCcccCeEEEEEEECCCcce
Confidence            44567789999999996     678888999999985321   1  1112223468899999999999999999998887


Q ss_pred             EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEE-----EEeecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852         89 TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT-----VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC  163 (579)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  163 (579)
                      ..++.|.|.....    +.+.....+..+.+|..+.|.|.     ..+.|++.++|+++.. + ...+  +...   ..+
T Consensus       109 ~~s~~L~V~~~~~----~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r--~~~~---~~~  177 (326)
T PHA02785        109 MMSLNLTIVSVSE----SNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKR--LKQR---TPG  177 (326)
T ss_pred             EEEEEEEEEecCC----CccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcc--eEec---CCC
Confidence            7788888875431    22222233455778999999997     2456889999987542 2 2222  2211   124


Q ss_pred             EEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC--
Q psy16852        164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP--  241 (579)
Q Consensus       164 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--  241 (579)
                      .|.|.+++.+|+|.|+|.+.|..+.........+...+.    ....+|.+. .+....+..|+.+.|.|.+.+.|.+  
T Consensus       178 ~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~----~~~~pp~~~-~p~~~~~~~G~~v~L~C~a~g~P~~~~  252 (326)
T PHA02785        178 IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR----DRIIPPTMQ-LPEGVVTSIGSNLTIACRVSLRPPTTD  252 (326)
T ss_pred             eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe----ccCCCceec-CCCcEEecCCCcEEEEEEEECCCCCCC
Confidence            799999999999999999999887654433222211110    011344433 3355667789999999999987764  


Q ss_pred             -eEEEEECCEEeccCc------eEEe----------CCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        242 -EVKWFKNGKEIVSKD------IETK----------DNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       242 -~v~W~~~~~~i~~~~------~~~~----------~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                       .+.|++||..+....      ....          .....|.|.+++.+|.|.|+|.|.|..+.
T Consensus       253 ~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~  317 (326)
T PHA02785        253 ADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI  317 (326)
T ss_pred             ceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence             899999999885421      0100          11457999999999999999999998744

>KOG4194|consensus

Probab=99.96  E-value=1.4e-28  Score=226.37  Aligned_cols=272  Identities=22%  Similarity=0.388  Sum_probs=200.7

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEc--cCCCeEEEEECCEEeccCc----------e------EEeCCeEEEEEccc
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTG--TPTPEVKWFKNGKEIVSKD----------I------ETKDNVTKLVIKQT  271 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~~~i~~~~----------~------~~~~~~~~l~i~~~  271 (579)
                      ..|.+...|..+....|+.++|+|.+.+  ..+.++.|.++........          .      ........|.+.++
T Consensus       502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV  581 (873)
T KOG4194|consen  502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV  581 (873)
T ss_pred             CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence            4566777777778889999999999876  3344899999775333221          0      00112357999999


Q ss_pred             CCCCCeEEEEEEEcCCeeeEE-EEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEE-cc
Q psy16852        272 TKKTTGKYEIRVVNEAGEART-SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP-MK  349 (579)
Q Consensus       272 ~~~d~G~y~C~a~n~~g~~~~-~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~-~~  349 (579)
                      ...|+|.|.|+++|..|+..+ .+.++|.  ..+.+.-..    .......+....+.|.+.|.|.|.|.|.++|.. .+
T Consensus       582 t~td~grYQCVvtN~FGStysqk~KltV~--~~PsFtktP----~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP  655 (873)
T KOG4194|consen  582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVN--QAPSFTKTP----EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP  655 (873)
T ss_pred             ecccCceEEEEEecccCcchhheeEEEee--ccCccccCc----ccceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence            999999999999999987543 3344443  333222111    011112223344568999999999999998765 33


Q ss_pred             --CCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEE
Q psy16852        350 --EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL  427 (579)
Q Consensus       350 --~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l  427 (579)
                        ...+.++..+++   .+.|.+++.+|.|.|+|.|.|.+|..+++++|.|..      .|.+..|..+..+..|+++.|
T Consensus       656 AA~eRRl~Vmpedd---~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e------~p~f~~PL~~~~V~~get~vl  726 (873)
T KOG4194|consen  656 AARERRLHVMPEDD---VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE------TPSFSIPLEDQLVVVGETLVL  726 (873)
T ss_pred             hhhhheeeecCCCC---EEEEecccccccceeEEeeeccccceeeceEEEEec------CCcccccccceEEEecceEEE
Confidence              335566666555   799999999999999999999999999999999997      788888899999999999999


Q ss_pred             EEEEEeeCC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecc
Q psy16852        428 KATVTGRPT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT  506 (579)
Q Consensus       428 ~C~~~g~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~  506 (579)
                      .|.+.|.|. |.+.|+|+++++.-..++..    .+                                 ....|+++...
T Consensus       727 qC~a~~~~a~pr~~W~k~d~pil~t~rh~f----~d---------------------------------~dQllvv~~~~  769 (873)
T KOG4194|consen  727 QCLAEGAPADPRLEWFKEDKPILITERHTF----PD---------------------------------GDQLLVVKENL  769 (873)
T ss_pred             EEecCCCCCCccccccCCCCceEEeecccC----CC---------------------------------CCeEEEEEehh
Confidence            999999888 89999999988754443332    12                                 22347777778


Q ss_pred             cccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        507 RDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       507 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .+|+|.|+|+.+|..|.-.....+.+.
T Consensus       770 ~~daG~yTcem~~~~~~~~~~i~l~~~  796 (873)
T KOG4194|consen  770 VEDAGIYTCEMSNTLGTERIHICLLVY  796 (873)
T ss_pred             hhhcceEEEEEEeeccceeeEEEEEEe
Confidence            888888888888888877776666654

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.96  E-value=3.6e-27  Score=218.33  Aligned_cols=263  Identities=19%  Similarity=0.239  Sum_probs=169.6

Q ss_pred             eeCCCCeEEEEEEE-----EccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852        222 LVPKDSTVTLEAEY-----TGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV  296 (579)
Q Consensus       222 ~~~~g~~~~l~C~~-----~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~  296 (579)
                      .+.+|+.+.|.|.+     .|.|.+++.|+|+|.....  ......+..|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~--~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L  114 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR--IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNL  114 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccce--EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEE
Confidence            35679999999986     6888889999999753211  1122233458899999999999999999999887777777


Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEE-----EeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEccc
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVV-----VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEV  371 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  371 (579)
                      .|.......+..    ...+..........+.|.     ..+.|++.++|++++. + ...++...  ..  ..|.|.++
T Consensus       115 ~V~~~~~~~~~~----~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~--~~--~~L~i~~v  184 (326)
T PHA02785        115 TIVSVSESNIDL----ISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR--TP--GIITIEDV  184 (326)
T ss_pred             EEEecCCCccce----eeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec--CC--CeEEEeec
Confidence            776443211110    001111111111223453     3467889999987642 2 22333221  11  27999999


Q ss_pred             CCCCCEEEEEEEEcCceeEEEE----EEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC---eEEEeeC
Q psy16852        372 FPENAGLYSCTAVNPVGEAVAA----ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP---SICWYRG  444 (579)
Q Consensus       372 ~~~d~G~Y~C~a~n~~g~~~~~----~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~v~W~~~  444 (579)
                      +.+|+|.|+|.|.|..|.....    +.|.|..   ...+|.+..+ ....+..|+.++|.|.+.|.|.+   .+.|++|
T Consensus       185 ~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~---~~~pp~~~~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kn  260 (326)
T PHA02785        185 RKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD---RIIPPTMQLP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWISN  260 (326)
T ss_pred             ChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec---cCCCceecCC-CcEEecCCCcEEEEEEEECCCCCCCceEEEEEC
Confidence            9999999999999988765433    3444432   1235555433 56677789999999999998874   8999999


Q ss_pred             CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee-eeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM-TDGNRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      |..+.....        ...               +.....+..+... .....+.|+|.+++.+|+|.|+|.|.|..|.
T Consensus       261 g~~i~~~~~--------~~~---------------~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~  317 (326)
T PHA02785        261 GMYYEEDDE--------DGD---------------GRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI  317 (326)
T ss_pred             CEECCCcCC--------CCc---------------eeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence            998854311        000               0011111000000 0112456999999999999999999998853

>KOG3515|consensus

Probab=99.91  E-value=1.8e-23  Score=203.02  Aligned_cols=483  Identities=16%  Similarity=0.212  Sum_probs=283.0

Q ss_pred             eeeeCCCCEEEEEEEEeeCC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee-EEEEE
Q psy16852         16 VVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA-TCSAN   93 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-~~~~~   93 (579)
                      ..+..|+.|.|.|.+.++|+ ..+.||+.+..+.  .++..   ....+|......++.-+.|.|++.|..+.. .....
T Consensus        17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~   91 (741)
T KOG3515|consen   17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYAT---IADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMI   91 (741)
T ss_pred             hhhccCCcceeeeecCCCCCCcceEEEecCcccc--ccccc---ccCCceeeecchhhhhhhhhhhhcccccCceeccee
Confidence            48999999999999987665 5899999887665  22111   123567777888888899999998874422 22333


Q ss_pred             EEEEecccCCCCCceecCCCceEEccCCcEEEEEEE--EeecCCeEEEEECCEEccCCCCceE--E---EcCC-CCeEEE
Q psy16852         94 LIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV--TGRPTPSICWYRGKEEILPDNGHTM--E---FNPT-TGECVL  165 (579)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~~p~~~i~W~~~~~~~~~~~~~~~--~---~~~~-~~~~~l  165 (579)
                      +.+..      ++.-...........+..+.+.|..  .+.|.+++.|+.++...........  .   .... .....+
T Consensus        92 l~v~~------~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l  165 (741)
T KOG3515|consen   92 LDVDY------PPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLL  165 (741)
T ss_pred             ecccc------CccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccce
Confidence            44432      3333333344455678899999965  4567789999998776443221100  0   1111 223568


Q ss_pred             EECcCCCCCCeEEEEEEEcC---CceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC
Q psy16852        166 SISEATPQDEAVYSVKAVNT---FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP  241 (579)
Q Consensus       166 ~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~  241 (579)
                      .+...+.++.|+|+|.+.+.   .+.......+.+...        .....+........+.+|+.+.|.|.+.+ +|.+
T Consensus       166 ~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~--------~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~  237 (741)
T KOG3515|consen  166 KQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAP--------CKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQ  237 (741)
T ss_pred             eeEEEEecCCceeEcccccccCccccccceeEeecccc--------cccceecchhhcCcccccceEEEEehhhcCCcch
Confidence            88888899999999999884   232222333332210        01111222222256888999999997764 7888


Q ss_pred             eEEEEECCEEeccCc-eEEe----CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccc
Q psy16852        242 EVKWFKNGKEIVSKD-IETK----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHP  316 (579)
Q Consensus       242 ~v~W~~~~~~i~~~~-~~~~----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~  316 (579)
                      .++|+++...+.... ....    ...+.+.+..-..++.-...|.+.| ...  .+..+.+.........+... ..  
T Consensus       238 ~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~--~~~~tav~~~~~~~~Ist~~-~~--  311 (741)
T KOG3515|consen  238 QQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLA--ASQITAVQVKPTAVPISTSD-SG--  311 (741)
T ss_pred             hhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccc--cceeeecccccccccccCcc-cc--
Confidence            999999988776642 1111    1112233333333444567799988 111  11222222111111111000 00  


Q ss_pred             cCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEEC---CCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEE
Q psy16852        317 TASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQD---TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA  393 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  393 (579)
                       ....-......|...++|...+.|+++...............   ......+.+......|.|.|+|.+.+.......+
T Consensus       312 -ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~ss  390 (741)
T KOG3515|consen  312 -LSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSS  390 (741)
T ss_pred             -cccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccc
Confidence             000111111224466778889999996554433221111111   1112356667778889999999999887544444


Q ss_pred             EEEEEEecccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEcc
Q psy16852        394 ATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE  471 (579)
Q Consensus       394 ~~l~v~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~  471 (579)
                      ..+.+...    .+|.+. .........+++.....-.+.+.| .+.+.|.+++.++....+.....             
T Consensus       391 s~~~l~~l----~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v-------------  453 (741)
T KOG3515|consen  391 SSFLLPVL----PSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRV-------------  453 (741)
T ss_pred             cceecccc----CCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEe-------------
Confidence            43333322    234333 333444555555554443333555 45899999988876554433221             


Q ss_pred             ccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCC
Q psy16852        472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTP  551 (579)
Q Consensus       472 ~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~  551 (579)
                                            -.......+.++.+.|.|.|.|+|.|..|.+.....+-         +...|.+....
T Consensus       454 ----------------------~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~---------~~~sp~~~~~~  502 (741)
T KOG3515|consen  454 ----------------------GAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLG---------VHTSPHNHHLQ  502 (741)
T ss_pred             ----------------------eccccccccceeeeccCCcceeeeccCCCceeeEEeec---------cccCCcccccc
Confidence                                  11222244667899999999999999999988777755         45777777666


Q ss_pred             CceEEecCCcEEEEEEeccce
Q psy16852        552 ETAKVMDGQSVLFTAQVGYSE  572 (579)
Q Consensus       552 ~~~~~~~g~~~~l~C~~~~~~  572 (579)
                      .......|+++.+.|.....+
T Consensus       503 ~~~~~~~~ns~~~~~~q~~~~  523 (741)
T KOG3515|consen  503 DQVEGATGNSVDGECMQDEQP  523 (741)
T ss_pred             cccccCCCCcccceeeccccc
Confidence            666667788899999886544

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.87  E-value=9.1e-21  Score=163.88  Aligned_cols=163  Identities=16%  Similarity=0.203  Sum_probs=119.5

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeC-----------CCeeEEEECCEEe--cC-CCC---E--E-EEEeCCEEEEEEcCCCC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHP-----------LPTMTWQKDGTEL--HA-TEH---Y--L-ITTVESVSTLEIINPTK   71 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~-----------~~~v~W~~~g~~~--~~-~~~---~--~-~~~~~~~~~L~i~~~~~   71 (579)
                      .+.++.+.+|+++.|.|.+.+.+           ...+.|+|++...  .. +.+   .  . .........|.|.+++.
T Consensus        28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~  107 (227)
T PHA02826         28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN  107 (227)
T ss_pred             CcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence            35678999999999999986643           3489999998652  11 111   0  0 01112246899999999


Q ss_pred             CCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEE-----eecCCeEEEEECCEEc
Q psy16852         72 EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-----GRPTPSICWYRGKEEI  146 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~~~i~W~~~~~~~  146 (579)
                      +|+|.|+|+|.|..+....++.+.|...            ..+..+.+|+.+.|.|.+.     +.|.+.|+|||++..+
T Consensus       108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~~------------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l  175 (227)
T PHA02826        108 IDEGIYICTISSGNICEESTIRLTFDSG------------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIV  175 (227)
T ss_pred             HHCEEEEEEEEECCcceEEEEEEEEecC------------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEEC
Confidence            9999999999998887777777777321            1234567899999999974     3457899999999998


Q ss_pred             cCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852        147 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE  190 (579)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (579)
                      ..+.+..+.    .+...|.|.+++.+|+|.|+|.+....+...
T Consensus       176 ~~~~r~~~~----~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~  215 (227)
T PHA02826        176 LYTDRIQLR----NNNSTLVIKSATHDDSGIYTCNLRFNKNSNN  215 (227)
T ss_pred             CCCCCEEEe----CCCCEEEECcCCHHhCEEEEEEEEEeECCEE
Confidence            765543332    1234799999999999999999988654433

>KOG3515|consensus

Probab=99.86  E-value=3.6e-20  Score=180.26  Aligned_cols=505  Identities=14%  Similarity=0.126  Sum_probs=289.8

Q ss_pred             CcCCCCccccccCceeeeCCCCEEEEEEEE--eeCCCeeEEEECCEEecCCCC--EEEE------EeCCEEEEEEcCCCC
Q psy16852          2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVE--GHPLPTMTWQKDGTELHATEH--YLIT------TVESVSTLEIINPTK   71 (579)
Q Consensus         2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~--~~~~~~v~W~~~g~~~~~~~~--~~~~------~~~~~~~L~i~~~~~   71 (579)
                      ..+.+|+-.-.........+..+.+.|.+.  +.|.+++.|+.+++.......  ..+.      .......|.+...+.
T Consensus        93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rk  172 (741)
T KOG3515|consen   93 DVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRK  172 (741)
T ss_pred             ccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEe
Confidence            345666666666667778899999999764  345668999999876543221  1000      001235688888899


Q ss_pred             CCCEEEEEEEEcCCe---eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEcc
Q psy16852         72 EDIGVYTCKATNIGG---VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEIL  147 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~  147 (579)
                      +|.|.|+|.+.+...   ..-....+.+...   .....+..........+|+.+.|.|.+ .++|.+.++||++.....
T Consensus       173 a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~---~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~  249 (741)
T KOG3515|consen  173 ADNGNYTCPANNRNSPGLSFAKQLTIIVEAP---CKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQS  249 (741)
T ss_pred             cCCceeEcccccccCccccccceeEeecccc---cccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccch
Confidence            999999999988532   2222233333211   111122222222456789999999976 467889999999887654


Q ss_pred             CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCe-EeccCCceeeCCC
Q psy16852        148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPT-IVRPLQALLVPKD  226 (579)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~-~~~~~~~~~~~~g  226 (579)
                      .........+...-...+.+..-+.++.-...|.+.|. +....  -+.+.           .+|. .........+..|
T Consensus       250 ~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~-~~~~~--~tav~-----------~~~~~~~Ist~~~~ls~g  315 (741)
T KOG3515|consen  250 ESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL-LAASQ--ITAVQ-----------VKPTAVPISTSDSGLSSG  315 (741)
T ss_pred             hhhcccCCCCCCcccccccccccccchhhhhhccccCc-cccce--eeecc-----------cccccccccCcccccccc
Confidence            43111111111111233444444455556778999882 11111  11111           1111 1111222336778


Q ss_pred             CeEEEEEEEE-ccCCCeEEEEECCEEeccCc-------eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        227 STVTLEAEYT-GTPTPEVKWFKNGKEIVSKD-------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       227 ~~~~l~C~~~-~~p~~~v~W~~~~~~i~~~~-------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                      +...+.|... +.|...+.|+++........       .........+........|.|.|+|.+.+.......+..+.+
T Consensus       316 ~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l  395 (741)
T KOG3515|consen  316 RSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLL  395 (741)
T ss_pred             cccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceec
Confidence            9999999655 47777999999654433322       111122235566777788999999999887755555555555


Q ss_pred             Eeccceeeeee-eeeeccccCceeeeecCeeEEEeeeC-CCeEEEEECCEEccCCCe--EEEEECCCCeEEEEEcccCCC
Q psy16852        299 TVAEAETVMMD-VRVESHPTASFQWFIHSEPVVVTGKP-TPLVTWSHDGTPMKEGKE--VTIYQDTDGLCKLAISEVFPE  374 (579)
Q Consensus       299 ~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~p-~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~  374 (579)
                      .+.+.+.+... .........    .....+..+.++| .+.+.|.+.+.++.....  +.+.....   ...+.++...
T Consensus       396 ~~l~~p~~L~~~~~~v~~~e~----d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~---~~s~~~v~~~  468 (741)
T KOG3515|consen  396 PVLPSPAFLVRHKTAVVAMEQ----DHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAG---LGSGVNVSRS  468 (741)
T ss_pred             cccCCchhhhhcccceeeccC----ccccccCcccCCCcccchhheecceecccccCceEEeecccc---ccccceeeec
Confidence            54443322111 000000000    0011111222444 468999999888766543  22222211   4446668889


Q ss_pred             CCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCC
Q psy16852        375 NAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDN  452 (579)
Q Consensus       375 d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~  452 (579)
                      |.|.|.|.+.|..|.......+.+..      .|.+.....+.....|+++.+.|.....|.-  .+.|.+.+.......
T Consensus       469 d~g~y~~tatns~gg~~~~~~~~~~~------sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~  542 (741)
T KOG3515|consen  469 DGGSYGLTATNSPGGAQAYLLLGVHT------SPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQI  542 (741)
T ss_pred             cCCcceeeeccCCCceeeEEeecccc------CCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccc
Confidence            99999999999999988888877765      4555544455566778889999998876654  789999876542211


Q ss_pred             CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        453 GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       453 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .-..                                 ..-.....+.+.+.....-.++.|.|.+.|..-.+...-.+.+
T Consensus       543 ~~~~---------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~  589 (741)
T KOG3515|consen  543 DQDA---------------------------------PQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKA  589 (741)
T ss_pred             cccc---------------------------------cccccCCccceeecccccccccceEEeecCCCCccccceEEEe
Confidence            0000                                 0001112233555555556689999999983334555555554


Q ss_pred             eeCCcccccccCCccccCCCc-eEEecC-CcEEEEEEeccceeecccc
Q psy16852        533 LPESEVTDVMESPRFIKTPET-AKVMDG-QSVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       533 ~~~~~~~~v~~~p~~~~~~~~-~~~~~g-~~~~l~C~~~~~~~~~~~~  578 (579)
                      .         .++........ .+...| ..++.+|.|++.|...+.|
T Consensus       590 ~---------s~~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~~~~~  628 (741)
T KOG3515|consen  590 Y---------SALIVTVRTPNMYTAQEGCVNASDDCVASGVPSTSFTT  628 (741)
T ss_pred             c---------ccccccccCCceeeeccCcccccccceecccccceeec
Confidence            3         23333222222 122222 2889999888888776654

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.82  E-value=1.6e-18  Score=149.95  Aligned_cols=170  Identities=18%  Similarity=0.217  Sum_probs=114.8

Q ss_pred             EEEEeccceeeeeeeeeeccccCceeeeecCeeEEEee-eCCCeEEEEECCEEc--cC-CCe-----EEEEECCCCeEEE
Q psy16852        296 VTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTG-KPTPLVTWSHDGTPM--KE-GKE-----VTIYQDTDGLCKL  366 (579)
Q Consensus       296 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~p~~~i~W~~~~~~~--~~-~~~-----~~~~~~~~~~~~l  366 (579)
                      ..+.+.+|+++.|.|.+...+...+.         ... ...+.+.|++++...  .. +.+     ............|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~---------~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L  100 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFF---------DKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENL  100 (227)
T ss_pred             ceEEecCCCCEEEEcccccccccccc---------ccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeE
Confidence            44668899999999987553321110         001 234567788876531  11 010     0000001122389


Q ss_pred             EEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEE-----eeCCCeEEE
Q psy16852        367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-----GRPTPSICW  441 (579)
Q Consensus       367 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~v~W  441 (579)
                      .|.+++.+|+|.|+|.|.|..+....++.|.|..      ++      .+..+.+|+.+.|.|.+.     +.|.|+++|
T Consensus       101 ~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~------~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~W  168 (227)
T PHA02826        101 WIGNVINIDEGIYICTISSGNICEESTIRLTFDS------GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTW  168 (227)
T ss_pred             EECCCChHHCEEEEEEEEECCcceEEEEEEEEec------CC------ccceEecCCCEEEEeeCCCCccccCCCceEEE
Confidence            9999999999999999999988888888887742      11      234567899999999985     346789999


Q ss_pred             eeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852        442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      +|++.++..+.+..+.                                     ...+.|+|.+++.+|+|.|+|.|+...
T Consensus       169 yKng~~l~~~~r~~~~-------------------------------------~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        169 YKNGNIVLYTDRIQLR-------------------------------------NNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EECCEECCCCCCEEEe-------------------------------------CCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            9999998765543321                                     123359999999999999999998865


Q ss_pred             ee
Q psy16852        522 GS  523 (579)
Q Consensus       522 g~  523 (579)
                      +.
T Consensus       212 ~g  213 (227)
T PHA02826        212 NS  213 (227)
T ss_pred             CC
Confidence            43

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.80  E-value=1.3e-18  Score=130.16  Aligned_cols=95  Identities=27%  Similarity=0.381  Sum_probs=88.3

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      |.|...|.++.+..|+.+.|.|.+.|.|.+.+.|+|+|+.+..+.++.+......+.|.|.++..+|+|.|+|.|.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            77889999999999999999999999999999999999999877777777777788999999999999999999999999


Q ss_pred             eeEEEEEEEEEeccc
Q psy16852         87 VATCSANLIVLEKEE  101 (579)
Q Consensus        87 ~~~~~~~~~v~~~~~  101 (579)
                      ....++.|.|.++|.
T Consensus        81 ~~~~~~~l~V~~~P~   95 (98)
T cd05762          81 SRQAQVNLTVVDKPD   95 (98)
T ss_pred             ceeEEEEEEEecCCC
Confidence            999999999998764

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.77  E-value=5.5e-18  Score=126.72  Aligned_cols=91  Identities=23%  Similarity=0.307  Sum_probs=78.3

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST  487 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~  487 (579)
                      |.|...+....+..|+.+.|.|.+.|.|+|++.|+|+|..|..+.++.+..                             
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~-----------------------------   51 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN-----------------------------   51 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe-----------------------------
Confidence            456667788889999999999999999999999999999997665544432                             


Q ss_pred             eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                            ....+.|+|.++..+|+|.|+|.|.|.+|...+++.|.|.
T Consensus        52 ------~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~   91 (98)
T cd05762          52 ------TENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVV   91 (98)
T ss_pred             ------cCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEe
Confidence                  2345669999999999999999999999999999999987

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.74  E-value=4.1e-17  Score=121.42  Aligned_cols=90  Identities=30%  Similarity=0.501  Sum_probs=81.8

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      +||+|+..|.++.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+......++|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            79999999999999999999999999999999999999999988777777766666789999999999999999999999


Q ss_pred             CeeeEEEEEE
Q psy16852         85 GGVATCSANL   94 (579)
Q Consensus        85 ~g~~~~~~~~   94 (579)
                      .|....+..|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9988776654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.72  E-value=6.4e-17  Score=118.61  Aligned_cols=88  Identities=25%  Similarity=0.346  Sum_probs=73.3

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      +|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+....++.+                              
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~------------------------------   50 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM------------------------------   50 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec------------------------------
Confidence            57777778888999999999999999999999999999877644321110                              


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                               ..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus        51 ---------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          51 ---------SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ   88 (88)
T ss_pred             ---------CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence                     12349999999999999999999999999999999873

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.71  E-value=8.4e-17  Score=117.96  Aligned_cols=87  Identities=29%  Similarity=0.445  Sum_probs=76.4

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      ||.|...|.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+....++  ..  ....|.|.+++.+|+|.|+|.|.|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SM--SGAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ec--CCCEEEECcCChhhCEEEEEEEEcCC
Confidence            789999999999999999999999999999999999999887654322  22  23589999999999999999999999


Q ss_pred             eeeEEEEEEEE
Q psy16852         86 GVATCSANLIV   96 (579)
Q Consensus        86 g~~~~~~~~~v   96 (579)
                      |....++.|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd05851          77 GKDKHQARVYV   87 (88)
T ss_pred             CceEEEEEEEE
Confidence            99888888776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.71  E-value=2.4e-16  Score=117.60  Aligned_cols=90  Identities=41%  Similarity=0.685  Sum_probs=85.1

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      |+|...|.++.+.+|+++.|.|.+.+.|.+.+.|+++|..+..+.++.........+|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            78999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy16852         87 VATCSANLIV   96 (579)
Q Consensus        87 ~~~~~~~~~v   96 (579)
                      .....+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9888887765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.69  E-value=5.8e-16  Score=115.19  Aligned_cols=90  Identities=22%  Similarity=0.379  Sum_probs=76.1

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .||.+...+....+..|+.+.|.|.+.|+|.|.+.|+++|..+..+.++.+.                            
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~----------------------------   53 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQIT----------------------------   53 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEE----------------------------
Confidence            3788888888899999999999999999999999999999888655544432                            


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL  530 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  530 (579)
                             .....+.|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus        54 -------~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          54 -------STEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             -------EcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence                   23344669999999999999999999999999888776

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.68  E-value=8.2e-16  Score=114.27  Aligned_cols=85  Identities=26%  Similarity=0.380  Sum_probs=73.9

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKATNIGGVATC   90 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~   90 (579)
                      -|+.+.+.+|+++.|.|.+.|.|.|.+.|||+|..+....++..... +...+|.|.+++.+|+|.|+|.|.|..|....
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            36668999999999999999999999999999999987777766544 34578999999999999999999999998888


Q ss_pred             EEEEEE
Q psy16852         91 SANLIV   96 (579)
Q Consensus        91 ~~~~~v   96 (579)
                      .+.|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            776654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.68  E-value=1.1e-15  Score=114.01  Aligned_cols=90  Identities=33%  Similarity=0.612  Sum_probs=78.8

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST  487 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~  487 (579)
                      |.|...+....+.+|+.+.|.|.+.|.|.|++.|++++..+..+.++.+..                             
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~-----------------------------   51 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIES-----------------------------   51 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEE-----------------------------
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeec-----------------------------
Confidence            567777788899999999999999999999999999999998777666544                             


Q ss_pred             eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                            .+..+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus        52 ------~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   52 ------DGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             ------ETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ------ccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence                  345667999999999999999999999999999999875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.67  E-value=1.2e-15  Score=113.36  Aligned_cols=84  Identities=20%  Similarity=0.359  Sum_probs=69.3

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ...++.+|+.+.|.|.+.|.|.|++.|++++..+....++.+...                                  +
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~----------------------------------~   54 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVE----------------------------------Q   54 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEc----------------------------------C
Confidence            446789999999999999999999999999999876655544320                                  1


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      +..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        55 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   92 (92)
T cd05737          55 GKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV   92 (92)
T ss_pred             CCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence            22345999999999999999999999999998888864

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.67  E-value=1.1e-15  Score=111.15  Aligned_cols=82  Identities=18%  Similarity=0.347  Sum_probs=67.8

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++.++.... ++.+                                   ...
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~-----------------------------------~~~   48 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRV-----------------------------------ESY   48 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEE-----------------------------------EEc
Confidence            3568899999999999999999999999999886432 2222                                   122


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      +..+.|.|.++..+|+|.|+|.|.|..|....++.|+|
T Consensus        49 ~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894          49 KDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            34567999999999999999999999999999988874

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.67  E-value=1.2e-15  Score=114.04  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=70.1

Q ss_pred             CceeeecCCCeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ....+.+|+.++|.|.+.| .|+|.+.|+|+|.+|.......+.....             .                 .
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~-------------~-----------------~   60 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENE-------------S-----------------E   60 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEecc-------------C-----------------c
Confidence            4567889999999999999 8999999999999997544333211000             0                 0


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ....+.|.|..+..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus        61 ~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          61 YRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             ceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence            0134669999999999999999999999999999999875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.66  E-value=2.3e-15  Score=109.58  Aligned_cols=83  Identities=25%  Similarity=0.390  Sum_probs=72.3

Q ss_pred             CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852         14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA   92 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~   92 (579)
                      +.+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.++..+|+|.|+|.|.|..|....++
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   82 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL   82 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence            3578999999999999999999999999999999754 456666656678999999999999999999999999888777


Q ss_pred             EEEE
Q psy16852         93 NLIV   96 (579)
Q Consensus        93 ~~~v   96 (579)
                      .|.|
T Consensus        83 ~l~V   86 (86)
T cd05894          83 FVKV   86 (86)
T ss_pred             EEEC
Confidence            7654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.65  E-value=3.1e-15  Score=110.73  Aligned_cols=88  Identities=27%  Similarity=0.379  Sum_probs=74.6

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      ++.+|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+................|.|.+++.+|.|.|+|.|.|..|..
T Consensus         3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~   82 (90)
T cd04972           3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA   82 (90)
T ss_pred             cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence            45677888899999999999999999999999999998865544434444556799999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy16852         89 TCSANLIV   96 (579)
Q Consensus        89 ~~~~~~~v   96 (579)
                      ..++.|.|
T Consensus        83 ~~~~~L~v   90 (90)
T cd04972          83 NVSVQVTV   90 (90)
T ss_pred             eEEEEEeC
Confidence            88777654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.65  E-value=8.9e-16  Score=107.48  Aligned_cols=73  Identities=26%  Similarity=0.399  Sum_probs=62.1

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |+.+.|.|.+.|.|.|+|.|+|++..+..+.++.+..                                      .+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~--------------------------------------~g~L~   42 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD--------------------------------------DGSLE   42 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC--------------------------------------CCEEE
Confidence            6789999999999999999999998876655544311                                      12499


Q ss_pred             EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      |.+++.+|+|.|+|.|.|..|....++.|+|
T Consensus        43 I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852          43 ILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             ECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            9999999999999999999999999999874

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.65  E-value=8.5e-16  Score=108.95  Aligned_cols=74  Identities=26%  Similarity=0.487  Sum_probs=62.3

Q ss_pred             cCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852        421 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL  500 (579)
Q Consensus       421 ~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l  500 (579)
                      +|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+.                                      ..+.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~--------------------------------------~~~~L   42 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL--------------------------------------SSGTL   42 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc--------------------------------------cCCeE
Confidence            5899999999999999999999999988654433221                                      12359


Q ss_pred             EEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        501 LISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        43 ~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745          43 RISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             EEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            99999999999999999999999999998874

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.65  E-value=2.7e-15  Score=112.03  Aligned_cols=83  Identities=22%  Similarity=0.344  Sum_probs=70.3

Q ss_pred             ceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852         15 PVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      .+.+.+|+++.|.|.+.| .|+|.+.|+|||..+............     ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            588999999999999999 888999999999999865444332221     25789999999999999999999999998


Q ss_pred             EEEEEEEEE
Q psy16852         89 TCSANLIVL   97 (579)
Q Consensus        89 ~~~~~~~v~   97 (579)
                      ...+.|.|.
T Consensus        92 ~~t~~L~V~  100 (101)
T cd04975          92 SLTFELYVN  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888774

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.64  E-value=2.2e-15  Score=113.49  Aligned_cols=91  Identities=26%  Similarity=0.499  Sum_probs=73.0

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEEecC-----CCCEEEEEeCCEEEEEEcCCCCCCCEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTELHA-----TEHYLITTVESVSTLEIINPTKEDIGVY   77 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   77 (579)
                      ++|++.. |.++.+.+|+.++|.|.+.|.|.|.+.||+  +|..+..     +.++.+.......+|.|.+++.+|+|.|
T Consensus         1 ~~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y   79 (98)
T cd05870           1 VQPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRY   79 (98)
T ss_pred             CCCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEE
Confidence            5788754 889999999999999999999999999999  4444432     2244443334567899999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEE
Q psy16852         78 TCKATNIGGVATCSANLIV   96 (579)
Q Consensus        78 ~C~~~~~~g~~~~~~~~~v   96 (579)
                      +|.|.|..|....++.|.|
T Consensus        80 ~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          80 DCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEeccCCcceeEEEEeC
Confidence            9999999998887776653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.64  E-value=2.3e-15  Score=111.13  Aligned_cols=87  Identities=25%  Similarity=0.396  Sum_probs=75.1

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      ||.+...|.+..+.+|+.+.|.|.+.|.|.|.++|++++..+.......    .....|.|.+++.+|+|.|+|.|.|..
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~   76 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIK   76 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECC
Confidence            6778888999999999999999999999999999999988765543322    234689999999999999999999999


Q ss_pred             eeeEEEEEEEE
Q psy16852         86 GVATCSANLIV   96 (579)
Q Consensus        86 g~~~~~~~~~v   96 (579)
                      |....++.|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd04968          77 GKDTHQGRIYV   87 (88)
T ss_pred             CcEEEEEEEEE
Confidence            99888888876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.64  E-value=2.5e-15  Score=109.63  Aligned_cols=83  Identities=24%  Similarity=0.417  Sum_probs=69.1

Q ss_pred             ecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        411 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       411 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      ...+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+.                                 
T Consensus         3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~---------------------------------   49 (85)
T cd05728           3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE---------------------------------   49 (85)
T ss_pred             cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe---------------------------------
Confidence            33456678999999999999999999999999999988654433221                                 


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                            .+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        50 ------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          50 ------AGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             ------CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence                  124999999999999999999999999999988874

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.64  E-value=4.5e-15  Score=109.86  Aligned_cols=86  Identities=23%  Similarity=0.365  Sum_probs=68.9

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      .++....+.+|+.+.|.|.+.|.|.|.+.|+++|..+........                                   
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~-----------------------------------   49 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTL-----------------------------------   49 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEE-----------------------------------
Confidence            344556689999999999999999999999999988754322111                                   


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ......+.|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus        50 ~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          50 ETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV   90 (90)
T ss_pred             EecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence            11223456999999999999999999999999999998874

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.64  E-value=4.4e-15  Score=111.62  Aligned_cols=92  Identities=26%  Similarity=0.464  Sum_probs=75.2

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC-----CEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-----HYLITTVESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      ++|+|...+....+..|+.++|.|.+.|.|.|.++|++++..+....     ++.+......+.|.|.+++.+|+|.|+|
T Consensus         1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C   80 (97)
T cd05869           1 AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC   80 (97)
T ss_pred             CCceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence            46888888888777789999999999999999999999998775332     2223333345789999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEE
Q psy16852         80 KATNIGGVATCSANLIV   96 (579)
Q Consensus        80 ~~~~~~g~~~~~~~~~v   96 (579)
                      .|.|..|....++.|.|
T Consensus        81 ~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          81 TASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEecCCCCeeEEEEEEC
Confidence            99999999888777764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.64  E-value=3.5e-15  Score=111.77  Aligned_cols=89  Identities=16%  Similarity=0.194  Sum_probs=70.3

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      ...+..|+.+.|.|.+.|+|+|.+.|+|+|.+|..+.+..+..          ..                   ++....
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~----------~~-------------------~~~~~~   62 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTS----------EH-------------------NVQETR   62 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEec----------cc-------------------ccccee
Confidence            4568889999999999999999999999999997654332210          00                   000112


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ..+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus        63 ~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          63 YVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             eccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence            34679999999999999999999999999999999875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.64  E-value=3.7e-15  Score=109.12  Aligned_cols=81  Identities=20%  Similarity=0.235  Sum_probs=64.4

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL  500 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l  500 (579)
                      |+.++|.|.+.|.|++.+.|++++..+..+. ++.+....                               ..+...+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~-------------------------------~~~~~~s~L   49 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKE-------------------------------VGDEVISTL   49 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEec-------------------------------CCCcEEEEE
Confidence            7899999999999999999999998875432 33322100                               001234669


Q ss_pred             EEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .|.++..+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus        50 ~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~   82 (88)
T cd05735          50 QILPTVREDSGFFSCHAINSYGEDRGIIQLTVQ   82 (88)
T ss_pred             EECCCCcccCEEEEEEEEcCCCcceEEEEEEEe
Confidence            999999999999999999999999999999987

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.63  E-value=3.4e-15  Score=110.59  Aligned_cols=85  Identities=19%  Similarity=0.295  Sum_probs=65.8

Q ss_pred             CCceeeecCCCeEEEEEEEeeCC-CeEEEee-CCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPT-PSICWYR-GKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~-~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      +....+..|+.++|.|.+.|.|. |.++|++ ++..+.... ++.+..                                
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~--------------------------------   54 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVR--------------------------------   54 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEe--------------------------------
Confidence            44556889999999999999995 6999998 676664422 222211                                


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCC-eeEEEEEEEEE
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVA-GSVTCTATLSL  532 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~v  532 (579)
                        .++..++|+|.+++.+|+|.|+|.|.|.. |+..+++.|.|
T Consensus        55 --~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          55 --NDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             --CCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence              12234679999999999999999999997 89999999876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.63  E-value=5.5e-15  Score=110.97  Aligned_cols=92  Identities=29%  Similarity=0.470  Sum_probs=75.1

Q ss_pred             CCcccccc--CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          6 APRFIEKI--QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         6 ~p~~~~~p--~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      ||.|...+  .++.+..|+.+.|.|.+.|.|.|.+.|+++|..+.... .+.........|+|.+++.+|+|.|+|.|.|
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   79 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-EKYSFNEDGSEMTILDVDKLDEAEYTCIAEN   79 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC-CEEEEeCCCCEEEECCCChhhCEEEEEEEEc
Confidence            56555543  44688999999999999999999999999999887552 2223334456899999999999999999999


Q ss_pred             CCeeeEEEEEEEEEe
Q psy16852         84 IGGVATCSANLIVLE   98 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~   98 (579)
                      ..|.....+.|.|..
T Consensus        80 ~~G~~~~~~~L~V~~   94 (95)
T cd05730          80 KAGEQEAEIHLKVFA   94 (95)
T ss_pred             CCCeEEEEEEEEEEe
Confidence            999988888888863

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.63  E-value=5e-15  Score=103.96  Aligned_cols=74  Identities=28%  Similarity=0.494  Sum_probs=59.1

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      +.|.|.+.|.|.|.+.|+|++..+..+ .++.+..+                                  ++...+|.|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~----------------------------------~~g~~~L~I~   46 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQD----------------------------------NSGRVTLLIK   46 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEc----------------------------------CCCcEEEEEC
Confidence            579999999999999999999998643 33333220                                  1112359999


Q ss_pred             ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        504 KITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ++..+|+|.|+|.|.|..|.+..++.|.|
T Consensus        47 ~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892          47 NVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            99999999999999999999999999875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.63  E-value=4.3e-15  Score=108.42  Aligned_cols=84  Identities=27%  Similarity=0.496  Sum_probs=73.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      |...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++..  .  ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~--~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--E--AGDLRITKLSLSDSGMYQCVAENKHGTI   77 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--e--CCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence            67789999999999999999999999999999999999876654433  2  2579999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy16852         89 TCSANLIV   96 (579)
Q Consensus        89 ~~~~~~~v   96 (579)
                      ..++.|.|
T Consensus        78 ~~~~~l~V   85 (85)
T cd05728          78 YASAELAV   85 (85)
T ss_pred             EEEEEEEC
Confidence            88777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.62  E-value=3.3e-15  Score=101.52  Aligned_cols=66  Identities=24%  Similarity=0.359  Sum_probs=55.8

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      ++|.|.+.|+|.|.++|+|+|..+...                                           ...+.|.|.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-------------------------------------------~~~~~L~i~~   37 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK-------------------------------------------HSQHSLQIKD   37 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc-------------------------------------------CCcCEEEECC
Confidence            579999999999999999999988421                                           1123599999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      +..+|+|.|+|.|.|..|....++.++|.
T Consensus        38 v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863          38 VTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            99999999999999999988888877763

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.62  E-value=5.6e-15  Score=110.93  Aligned_cols=83  Identities=24%  Similarity=0.390  Sum_probs=67.7

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      .+..+..|+.+.|.|.+.|.|.|.+.|+++|..+..... ...+                                   .
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~~~-----------------------------------~   54 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEE-KYSF-----------------------------------N   54 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCC-EEEE-----------------------------------e
Confidence            345688999999999999999999999999988754311 1111                                   1


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ...+.|+|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        55 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          55 EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            223459999999999999999999999999999999985

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.62  E-value=8.6e-15  Score=110.02  Aligned_cols=96  Identities=23%  Similarity=0.345  Sum_probs=70.9

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      .|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+......                     ..|.|      
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~---------------------~~~~~------   54 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKT---------------------LDGHI------   54 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccc---------------------cCccE------
Confidence            455655555555666899999999999999999999988766432110                     00111      


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                         .+..+...+.|.|.+++.+|+|.|+|.|.|..|.+..++.|.|
T Consensus        55 ---~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          55 ---VVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             ---EEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence               1112234467999999999999999999999999999998875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.62  E-value=7.5e-15  Score=104.34  Aligned_cols=74  Identities=23%  Similarity=0.444  Sum_probs=61.6

Q ss_pred             CeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        424 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       424 ~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      .+.|.|.+.|.|.|.+.|+++|..+..+.++.+..                                   .+..+.|.|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~-----------------------------------~~~~~~L~I~   45 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET-----------------------------------TASSTSLVIK   45 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE-----------------------------------CCCeEEEEEC
Confidence            37899999999999999999999986555443322                                   3345669999


Q ss_pred             ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        504 KITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus        46 ~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748          46 NAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            99999999999999999999999988874

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.61  E-value=8.5e-15  Score=108.07  Aligned_cols=86  Identities=23%  Similarity=0.303  Sum_probs=69.1

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST  487 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~  487 (579)
                      +.+...+....+.+|+.+.|.|.+.|.|.|++.|++++..+.......                                
T Consensus         2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--------------------------------   49 (88)
T cd04968           2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--------------------------------   49 (88)
T ss_pred             CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--------------------------------
Confidence            444555667778999999999999999999999999876553322110                                


Q ss_pred             eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                             ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        50 -------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          50 -------MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             -------EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence                   12245999999999999999999999999999999886

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.61  E-value=8e-15  Score=110.60  Aligned_cols=91  Identities=24%  Similarity=0.457  Sum_probs=73.8

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-----CCEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-----EHYLITTVESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      ++|+|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...     .++........+.|.|.+++.+|+|.|+|
T Consensus         1 ~~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   79 (96)
T cd05732           1 VQPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDC   79 (96)
T ss_pred             CCccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEE
Confidence            468885 577889999999999999999999999999998766532     22333333346799999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEE
Q psy16852         80 KATNIGGVATCSANLIV   96 (579)
Q Consensus        80 ~~~~~~g~~~~~~~~~v   96 (579)
                      .|.|..|....++.|.|
T Consensus        80 ~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          80 EASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEeCCCCcEEEEEEeC
Confidence            99999998887776653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.61  E-value=1.3e-14  Score=106.34  Aligned_cols=84  Identities=26%  Similarity=0.433  Sum_probs=65.6

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEee-CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      ++.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+..+.++.+.                                  
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~----------------------------------   50 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ----------------------------------   50 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE----------------------------------
Confidence            346667899999999999999998 999998 46666555444332                                  


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEE
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSL  532 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  532 (579)
                       .++..+.|+|.++..+|+|.|+|.|.|..|.. ..++.|.+
T Consensus        51 -~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          51 -KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             -eCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence             23445679999999999999999999999975 56666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.61  E-value=1.5e-14  Score=105.89  Aligned_cols=87  Identities=24%  Similarity=0.474  Sum_probs=71.9

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      +...|.+..+.+|+++.|.|.+.|.|. .+.||+ +|..+..+.++.....+....|.|.++..+|+|.|+|.|.|..|.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   81 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ   81 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence            345688899999999999999999998 899998 577776666776665566679999999999999999999999886


Q ss_pred             e-EEEEEEEE
Q psy16852         88 A-TCSANLIV   96 (579)
Q Consensus        88 ~-~~~~~~~v   96 (579)
                      . ..++.|.+
T Consensus        82 ~~~~~i~l~~   91 (92)
T cd05866          82 TQEATVVLEI   91 (92)
T ss_pred             EEEEEEEEEE
Confidence            5 44555544

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.61  E-value=9.2e-15  Score=102.47  Aligned_cols=71  Identities=25%  Similarity=0.491  Sum_probs=58.8

Q ss_pred             CeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        424 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       424 ~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      .+.|.|.+.|.|.|.++|+|+|..+....++.+..                                      ...|.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~--------------------------------------~~~l~i~   42 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK--------------------------------------EHNLQVL   42 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe--------------------------------------cCCEEEE
Confidence            47899999999999999999999886655443311                                      1127788


Q ss_pred             ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        504 KITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      +++.+|+|.|+|.|.|..|+...++.|.|
T Consensus        43 ~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723          43 GLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             cCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            99999999999999999999999999874

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.61  E-value=1.2e-14  Score=107.68  Aligned_cols=85  Identities=22%  Similarity=0.398  Sum_probs=68.8

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +..+++.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..                                  .
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~----------------------------------~   53 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKL----------------------------------E   53 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEE----------------------------------c
Confidence            345678999999999999999999999999998886555443322                                  0


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ++..+.|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus        54 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          54 QGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             CCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            112345999999999999999999999999999888874

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.61  E-value=1.4e-14  Score=107.23  Aligned_cols=85  Identities=27%  Similarity=0.417  Sum_probs=72.4

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEcCCeeeEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-SVSTLEIINPTKEDIGVYTCKATNIGGVATC   90 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~   90 (579)
                      .|..+.+.+|+.+.|.|.+.+.|.|.+.||++|..+....++...... ...+|.|.+++.+|+|.|+|.|.|..|....
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV   86 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence            467789999999999999999999999999999998777666554433 3468999999999999999999999998887


Q ss_pred             EEEEEE
Q psy16852         91 SANLIV   96 (579)
Q Consensus        91 ~~~~~v   96 (579)
                      ++.|.|
T Consensus        87 ~~~v~~   92 (92)
T cd05891          87 DVTVSV   92 (92)
T ss_pred             EEEEEC
Confidence            776653

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.60  E-value=1e-14  Score=102.33  Aligned_cols=73  Identities=32%  Similarity=0.513  Sum_probs=61.2

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVE-SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      +.|.|.+.|.|.|.|.|+|+|..+... .++.+...+ +..+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            579999999999999999999998743 455444333 3458999999999999999999999999998887764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.60  E-value=6.8e-15  Score=103.00  Aligned_cols=73  Identities=34%  Similarity=0.482  Sum_probs=63.5

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      |+.+.|.|.+.|.|.|.|.|+|++..+..+.++.+.   ...+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~---~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW---DDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc---CCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            789999999999999999999999988766665543   2357999999999999999999999999998887764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.60  E-value=1.4e-14  Score=101.94  Aligned_cols=74  Identities=32%  Similarity=0.512  Sum_probs=58.6

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      ++|.|.+.|.|.|++.|+|++..+..+. ++.+..                                  .+.....|.|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~----------------------------------~~~~~~~L~I~   46 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ----------------------------------DNCGYICLLIQ   46 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE----------------------------------cCCCEEEEEEC
Confidence            5799999999999999999999886532 222211                                  00112358999


Q ss_pred             ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        504 KITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ++..+|+|.|+|.|.|..|....++.|.|
T Consensus        47 ~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893          47 GATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            99999999999999999999999999875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.60  E-value=1.5e-14  Score=107.22  Aligned_cols=87  Identities=22%  Similarity=0.405  Sum_probs=70.0

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCC-CeeEEEE-CCEEecC-CCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQK-DGTELHA-TEHYLITTV-ESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~-~g~~~~~-~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      ...|....+.+|++++|.|.+.|.|. |.++|++ +|..+.. +.++.+... ...++|.|.+++.+|+|.|+|.|.|..
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   83 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED   83 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence            45678888999999999999999985 6999998 7876654 334333322 235789999999999999999999986


Q ss_pred             -eeeEEEEEEEE
Q psy16852         86 -GVATCSANLIV   96 (579)
Q Consensus        86 -g~~~~~~~~~v   96 (579)
                       |....++.|.|
T Consensus        84 ~g~~~~s~~l~v   95 (96)
T cd05865          84 EGESEATVNVKI   95 (96)
T ss_pred             CCcEEEEEEEEE
Confidence             88888887766

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.59  E-value=7e-15  Score=104.21  Aligned_cols=74  Identities=35%  Similarity=0.605  Sum_probs=63.7

Q ss_pred             CCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         20 QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        20 ~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      ||+.+.|.|.+.|.|.|.+.|+|+|..+....+....   ...+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            6999999999999999999999999988765544332   3358999999999999999999999999888877764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.59  E-value=1.7e-14  Score=102.80  Aligned_cols=74  Identities=22%  Similarity=0.391  Sum_probs=60.8

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCe-eEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGH-TMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL  500 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l  500 (579)
                      |+.++|.|.+.|.|.|+++|+++|..+...... ....                                     ..+.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-------------------------------------~~~~L   43 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-------------------------------------SSGAL   43 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-------------------------------------eCCEE
Confidence            788999999999999999999999988543211 1100                                     12349


Q ss_pred             EEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        501 LISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        44 ~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867          44 ILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             EECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            99999999999999999999999999999986

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.59  E-value=2.7e-14  Score=104.58  Aligned_cols=80  Identities=29%  Similarity=0.506  Sum_probs=67.7

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEe----CCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTV----ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI   95 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~   95 (579)
                      |+.++|.|.+.|.|++.+.|++++..+... .++.+...    ...++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            899999999999999999999999988654 34544321    2247899999999999999999999999999999999


Q ss_pred             EEecc
Q psy16852         96 VLEKE  100 (579)
Q Consensus        96 v~~~~  100 (579)
                      |.+.|
T Consensus        81 V~~~P   85 (88)
T cd05735          81 VQEPP   85 (88)
T ss_pred             EeCCC
Confidence            98764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.59  E-value=3.1e-14  Score=101.14  Aligned_cols=74  Identities=32%  Similarity=0.513  Sum_probs=66.0

Q ss_pred             CEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         23 PALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        23 ~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      .+.|.|.+.|.|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            47899999999999999999999997777777776677889999999999999999999999999888777654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.59  E-value=1.7e-14  Score=102.53  Aligned_cols=75  Identities=21%  Similarity=0.334  Sum_probs=60.6

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |+.++|.|.+.|.|.|+|+|+++|.++.........                                  ..  ..+.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~----------------------------------~~--~~~~l~   44 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSR----------------------------------KV--DGDTII   44 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceE----------------------------------Ee--cCCEEE
Confidence            688999999999999999999999988543211100                                  00  112488


Q ss_pred             EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      |.+++.+|+|.|+|.|.|.+|...+++.|.|
T Consensus        45 i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868          45 FSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             ECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            9999999999999999999999999999987

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.58  E-value=2.1e-14  Score=108.14  Aligned_cols=95  Identities=21%  Similarity=0.355  Sum_probs=68.4

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeC--CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG--KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      +|.+.. +.+.++.+|+.++|.|.+.|.|.|.+.|+++  +..+....                     ....++|.   
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~---------------------~~~~~r~~---   56 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD---------------------KSPDGRIE---   56 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC---------------------cCcCceEE---
Confidence            455543 5678899999999999999999999999994  32221110                     00011121   


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                            +......+.|+|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus        57 ------v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          57 ------VKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             ------EeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence                  111223456999999999999999999999999999888864

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.58  E-value=2.2e-14  Score=108.15  Aligned_cols=95  Identities=22%  Similarity=0.322  Sum_probs=70.6

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      +|.|. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+......                     ..|.|      
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~---------------------~~~~~------   53 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKS---------------------LDGRI------   53 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCcc---------------------ccceE------
Confidence            45554 345678899999999999999999999999988655332110                     00111      


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                         .+......+.|+|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        54 ---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          54 ---VVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             ---EEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence               1112234567999999999999999999999999998888864

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.58  E-value=1.6e-14  Score=98.16  Aligned_cols=66  Identities=26%  Similarity=0.360  Sum_probs=57.1

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      ++|.|.+.|.|.|.++|||||+.+...        .....|.|.++..+|+|.|+|.|.|..|..+.+..+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            479999999999999999999998632        134689999999999999999999999988777777663

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.58  E-value=1.8e-14  Score=101.90  Aligned_cols=73  Identities=26%  Similarity=0.432  Sum_probs=61.5

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |+.+.|.|.+.|.|.|++.|++++..+....++.+.                                      ....|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~--------------------------------------~~~~L~   42 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW--------------------------------------PDGSLE   42 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC--------------------------------------CCCeEE
Confidence            688999999999999999999999988655443321                                      112399


Q ss_pred             EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      |.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus        43 i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969          43 ILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             EccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            9999999999999999999999999998875

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.57  E-value=3.7e-14  Score=101.62  Aligned_cols=76  Identities=28%  Similarity=0.468  Sum_probs=66.6

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      |+++.|.|.+.|.|.|.+.|++++..+....++.+....+...|+|.+++.+|+|.|+|.|.|..|.......+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            7899999999999999999999999887777776666666789999999999999999999999998877665554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.57  E-value=4e-14  Score=106.05  Aligned_cols=83  Identities=28%  Similarity=0.387  Sum_probs=69.5

Q ss_pred             ceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe------CCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852         15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV------ESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      ...+..|+.+.|.|.+.|+|.|.+.|+|||.++..+........      ...++|+|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            57888999999999999999999999999999876553322211      124689999999999999999999999998


Q ss_pred             EEEEEEEEE
Q psy16852         89 TCSANLIVL   97 (579)
Q Consensus        89 ~~~~~~~v~   97 (579)
                      +.++.+.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.57  E-value=3.6e-14  Score=105.38  Aligned_cols=82  Identities=30%  Similarity=0.648  Sum_probs=67.4

Q ss_pred             CccccccCceeee---CCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy16852          7 PRFIEKIQPVVSH---QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT-KEDIGVYTCKAT   82 (579)
Q Consensus         7 p~~~~~p~~~~v~---~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~   82 (579)
                      |.|+..|.++.+.   +|+.++|.|.+.|.|.|.|+|+|+|..+......+.....  ..|.|.++. .+|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEE
Confidence            7899999997765   4789999999999999999999999998654444333333  578999875 699999999999


Q ss_pred             cCCeeeEE
Q psy16852         83 NIGGVATC   90 (579)
Q Consensus        83 ~~~g~~~~   90 (579)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (94)
T cd05848          80 NSIGSILS   87 (94)
T ss_pred             cCCCeEEe
Confidence            99997754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.57  E-value=3e-14  Score=102.08  Aligned_cols=76  Identities=24%  Similarity=0.350  Sum_probs=62.1

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |+.+.|.|.+.|.|.|.+.|++++..+....++.+.                                   ..+..+.|+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~L~   45 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSIT-----------------------------------SEGGYGTLT   45 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEE-----------------------------------ECCCEEEEE
Confidence            688999999999999999999998887655443332                                   123345699


Q ss_pred             EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      |.+++.+|+|.|+|.|.|..|.....+.+.+
T Consensus        46 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743          46 IRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             ECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            9999999999999999999999888777765

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.57  E-value=3.2e-14  Score=101.04  Aligned_cols=76  Identities=22%  Similarity=0.422  Sum_probs=62.6

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      |+.++|.|.+.|.|.|.|+|+|+|+.+........... ....|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~-~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV-DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe-cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            78999999999999999999999999864322111111 22479999999999999999999999999999888873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.57  E-value=2.7e-14  Score=100.34  Aligned_cols=75  Identities=19%  Similarity=0.215  Sum_probs=57.9

Q ss_pred             EEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecc
Q psy16852        427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT  506 (579)
Q Consensus       427 l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~  506 (579)
                      |.|.+.|+|.|+|+|+|+|.+|..+.+....+.           .                   .......+.|.|.++.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~-----------~-------------------~~~~~~~~~L~i~~~~   52 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIH-----------V-------------------INNTEYHGCLQLDNPT   52 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeE-----------e-------------------ecccceEEEEEECCCC
Confidence            679999999999999999999976654332210           0                   0001124569999999


Q ss_pred             cccceeEEEEEEeCCeeEEEEEEEE
Q psy16852        507 RDQIGDVTCRAENVAGSVTCTATLS  531 (579)
Q Consensus       507 ~~d~G~Y~C~a~n~~g~~~~~~~l~  531 (579)
                      .+|+|.|+|.|.|.+|++..++.+.
T Consensus        53 ~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855          53 HLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             cccCEEEEEEEEcCCcccceEEEee
Confidence            9999999999999999998888775

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.57  E-value=3.1e-14  Score=100.19  Aligned_cols=73  Identities=33%  Similarity=0.571  Sum_probs=60.5

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVE-SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      |+|.|.+.|.|.|.+.|+|++..+... .++.....+ +...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            579999999999999999999998754 344443332 2347999999999999999999999999998887764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.56  E-value=4.8e-14  Score=102.33  Aligned_cols=77  Identities=23%  Similarity=0.279  Sum_probs=60.9

Q ss_pred             CCeEEEEEEEeeCCC--eEEEeeCCEEcCCCC---CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        423 SPATLKATVTGRPTP--SICWYRGKEEILPDN---GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       423 ~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      +.++|.|.+.|.|.|  ++.|+++|..+....   ++..                                  +......
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~----------------------------------~~~~~~~   46 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRR----------------------------------MEVKETI   46 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEE----------------------------------EEecceE
Confidence            478999999999988  689999998885432   1100                                  1111234


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      +.|+|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus        47 ~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~   82 (85)
T cd05854          47 GDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVR   82 (85)
T ss_pred             eEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEE
Confidence            569999999999999999999999999999999986

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.56  E-value=4.2e-14  Score=108.06  Aligned_cols=91  Identities=33%  Similarity=0.576  Sum_probs=69.5

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC----CCEEEEEe-CCEEEEEEc--CCCCCCCEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT----EHYLITTV-ESVSTLEII--NPTKEDIGVYT   78 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~----~~~~~~~~-~~~~~L~i~--~~~~~d~G~Y~   78 (579)
                      ||.|...|.++.+.+|+.++|.|.+.|.|.|.+.|+|+|..+...    ........ +....+.|.  .++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            789999999999999999999999999999999999999988652    11222222 222233333  44789999999


Q ss_pred             EEEEcCCee-eEEEEEEEE
Q psy16852         79 CKATNIGGV-ATCSANLIV   96 (579)
Q Consensus        79 C~~~~~~g~-~~~~~~~~v   96 (579)
                      |.|.|..|. .+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999997 555666655

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.56  E-value=6e-14  Score=100.04  Aligned_cols=74  Identities=30%  Similarity=0.517  Sum_probs=62.1

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHY-LITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      |+.++|.|.+.|.|.|.++|+++|..+...... +...  ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            789999999999999999999999988654321 2222  2357999999999999999999999999988888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.56  E-value=3.8e-14  Score=101.57  Aligned_cols=75  Identities=20%  Similarity=0.327  Sum_probs=61.8

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |+.++|.|.+.|.|.|++.|+++|..+....... .                                   .....+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~-----------------------------------~~~~~~~L~   44 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-R-----------------------------------RRVDGGTLI   44 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-e-----------------------------------EEccCCEEE
Confidence            7889999999999999999999999886543210 0                                   011234599


Q ss_pred             EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      |.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus        45 i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978          45 LSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             ECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            9999999999999999999999999999986

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.55  E-value=6.7e-14  Score=99.00  Aligned_cols=74  Identities=28%  Similarity=0.467  Sum_probs=58.3

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      ++|.|.+.|.|.|.+.|+|++..+..+ .++.+..                                  .......|.|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~----------------------------------~~~~~~~L~I~   46 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ----------------------------------DNCGRICLLIQ   46 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE----------------------------------cCCCeEEEEEC
Confidence            579999999999999999999988643 2222211                                  01122359999


Q ss_pred             ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        504 KITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      +++.+|+|.|+|.|.|..|....++.|.|
T Consensus        47 ~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744          47 NANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            99999999999999999999999998874

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.55  E-value=4.4e-14  Score=98.74  Aligned_cols=70  Identities=24%  Similarity=0.391  Sum_probs=57.8

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      +.|.|.+.|.|.|.+.|+|+|..+..+.++..                                       ..+.|.|.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~---------------------------------------~~~~L~I~~   41 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK---------------------------------------SGHSLTIKD   41 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc---------------------------------------CCCEEEECc
Confidence            47999999999999999999999865532111                                       123599999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ++.+|+|.|+|.|.|..|....++.++|.
T Consensus        42 v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976          42 VTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            99999999999999999998888888764

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.55  E-value=6.5e-14  Score=104.03  Aligned_cols=82  Identities=24%  Similarity=0.412  Sum_probs=59.5

Q ss_pred             CeeecCCCceeee---cCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        408 PKFTKPLKPVIAE---AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       408 p~~~~~~~~~~~~---~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      |.|+..+.+..+.   +|+.++|.|.+.|.|.|+|+|+|+|..+.....+.+..  .                       
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~--~-----------------------   56 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL--I-----------------------   56 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe--e-----------------------
Confidence            4455555554433   47899999999999999999999999885433222211  0                       


Q ss_pred             ecceeeeeeeCCeeEEEEeecc-cccceeEEEEEEeCCeeEEE
Q psy16852        485 SSTETKIMTDGNRSVLLISKIT-RDQIGDVTCRAENVAGSVTC  526 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~  526 (579)
                                  .+.|.|.++. .+|+|.|+|.|.|.+|....
T Consensus        57 ------------~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          57 ------------DGNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             ------------CCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence                        1237888874 68999999999999998743

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.55  E-value=4.2e-14  Score=97.60  Aligned_cols=69  Identities=20%  Similarity=0.334  Sum_probs=55.5

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      +.|.|.+.|+|.|.+.|+|+|.++....++                                        ...+.|.|.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~----------------------------------------~~~~~L~I~~   40 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF----------------------------------------KRGVHLTIYE   40 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE----------------------------------------ccCCEEEECc
Confidence            478999999999999999999998543211                                        0123499999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      +..+|+|.|+|.|.|..|......+++|.
T Consensus        41 v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864          41 VTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            99999999999999999987777766653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.55  E-value=2.2e-14  Score=99.99  Aligned_cols=68  Identities=19%  Similarity=0.416  Sum_probs=56.8

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      ++|.|.+.|.|.|.+.|+|+|..+....++.+.                                      ..+.|.|.+
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~--------------------------------------~~~~L~I~~   42 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS--------------------------------------PEGYLAIRD   42 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEEC--------------------------------------CCCEEEECc
Confidence            579999999999999999999888655443321                                      123499999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEE
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATL  530 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l  530 (579)
                      ++.+|+|.|+|.|.|.+|....++.|
T Consensus        43 ~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746          43 VGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CChhhCEEEEEEEECCCCcEEEEEEe
Confidence            99999999999999999999888876

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.55  E-value=6.2e-14  Score=102.95  Aligned_cols=82  Identities=21%  Similarity=0.390  Sum_probs=65.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852        417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN  496 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~  496 (579)
                      ..+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+...          .                        .....
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~----------~------------------------~~~~~   49 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGG----------Y------------------------KVRNQ   49 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceee----------e------------------------EEeCC
Confidence            3477899999999999999999999999998865433210          0                        00112


Q ss_pred             eeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        497 RSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ...|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus        50 ~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857          50 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            335899999999999999999999999999998874

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.55  E-value=6.4e-14  Score=102.99  Aligned_cols=87  Identities=26%  Similarity=0.394  Sum_probs=68.4

Q ss_pred             CCccccc--cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          6 APRFIEK--IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         6 ~p~~~~~--p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +|.+...  +.+..+.+|++++|.|.+.|. .|.+.|++++..+... +.  .......+|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   76 (91)
T cd05740           1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RL--QLSNDNRTLTFNNVTRSDTGHYQCEASN   76 (91)
T ss_pred             CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CE--EEeCCCCEEEECcCChhhCEEEEEEEEc
Confidence            3555433  556899999999999999999 8899999999987543 33  3333446899999999999999999999


Q ss_pred             CCeeeEE-EEEEEE
Q psy16852         84 IGGVATC-SANLIV   96 (579)
Q Consensus        84 ~~g~~~~-~~~~~v   96 (579)
                      ..|...+ .+.|.|
T Consensus        77 ~~G~~~S~~~~L~V   90 (91)
T cd05740          77 EVSNMTSDPYILNV   90 (91)
T ss_pred             CCCCEEeeeEEEEe
Confidence            9987554 455554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.54  E-value=4.4e-14  Score=101.34  Aligned_cols=78  Identities=21%  Similarity=0.460  Sum_probs=65.0

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA   92 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~   92 (579)
                      |.+..+.+|+.++|.|.+.+. .+.+.|+|||..+....++.+.  +  ..|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            577889999999999999885 5689999999999776655442  2  4799999999999999999999888766665


Q ss_pred             EEE
Q psy16852         93 NLI   95 (579)
Q Consensus        93 ~~~   95 (579)
                      .+.
T Consensus        76 ~v~   78 (79)
T cd04973          76 SVN   78 (79)
T ss_pred             EEe
Confidence            554

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.54  E-value=1.1e-13  Score=100.48  Aligned_cols=78  Identities=28%  Similarity=0.498  Sum_probs=63.9

Q ss_pred             CCEEEEEEEEeeCCC--eeEEEECCEEecCC---CCEE-EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852         22 QPALFTCKVEGHPLP--TMTWQKDGTELHAT---EHYL-ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI   95 (579)
Q Consensus        22 ~~~~l~C~~~~~~~~--~v~W~~~g~~~~~~---~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~   95 (579)
                      +.++|.|.+.|.|.+  .+.|++||..+...   .++. .......++|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            578999999999876  68999999988643   2332 22233457999999999999999999999999999999999


Q ss_pred             EEec
Q psy16852         96 VLEK   99 (579)
Q Consensus        96 v~~~   99 (579)
                      |.++
T Consensus        81 V~~~   84 (85)
T cd05854          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            9753

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.54  E-value=1.3e-13  Score=105.37  Aligned_cols=96  Identities=27%  Similarity=0.385  Sum_probs=75.0

Q ss_pred             CCCCccccccCceee----eCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEe----CCEEEEEEcCCC-CCC
Q psy16852          4 VLAPRFIEKIQPVVS----HQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTV----ESVSTLEIINPT-KED   73 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v----~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~----~~~~~L~i~~~~-~~d   73 (579)
                      .++|.|...|....+    ..|..++|.|.+.|.|.+.+.|++||..+... .++.....    ...+.|+|.+++ .+|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            468988887764222    25689999999999999999999999998643 34432221    124789999997 599


Q ss_pred             CEEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852         74 IGVYTCKATNIGGVATCSANLIVLEK   99 (579)
Q Consensus        74 ~G~Y~C~~~~~~g~~~~~~~~~v~~~   99 (579)
                      .|.|+|.|.|..|....++.|.+..+
T Consensus        82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~  107 (109)
T cd05773          82 YALFTCTAHNSLGEDSLDIQLVSTSR  107 (109)
T ss_pred             CEEEEEEEEeCCccCcEEEEEEecCC
Confidence            99999999999999988888888754

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.54  E-value=1.2e-13  Score=102.77  Aligned_cols=83  Identities=28%  Similarity=0.477  Sum_probs=67.1

Q ss_pred             CCccccccCceeeeCC---CCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCC-CCCCEEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQE---QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT-KEDIGVYTCKA   81 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G---~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~   81 (579)
                      .|.|...|.++.+.+|   +.++|.|.+.|.|.+.|+|+++|..+......+.....  ..|.|.++. .+|+|.|+|.|
T Consensus         1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A   78 (94)
T cd05850           1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA--GNLVINNPQKARDAGSYQCLA   78 (94)
T ss_pred             CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC--CeEEEccCCccCcCEEEEEEE
Confidence            3788899999988777   57999999999999999999999998644333333322  578998865 69999999999


Q ss_pred             EcCCeeeEE
Q psy16852         82 TNIGGVATC   90 (579)
Q Consensus        82 ~~~~g~~~~   90 (579)
                      .|..|...+
T Consensus        79 ~N~~G~~~s   87 (94)
T cd05850          79 INRCGTVVS   87 (94)
T ss_pred             EcCcCcEEE
Confidence            999997765

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.54  E-value=7.8e-14  Score=96.52  Aligned_cols=69  Identities=26%  Similarity=0.510  Sum_probs=54.8

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |+.++|.|.+.|.|.|.|+|+|++..+....+...                                       ....|.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~---------------------------------------~~~~L~   41 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV---------------------------------------GRNVLE   41 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec---------------------------------------CccEEE
Confidence            67899999999999999999999988754332111                                       112478


Q ss_pred             EeecccccceeEEEEEEeCCeeEEEEEEEE
Q psy16852        502 ISKITRDQIGDVTCRAENVAGSVTCTATLS  531 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  531 (579)
                      |.++.  |+|.|+|.|.|.+|...++++|+
T Consensus        42 i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~   69 (69)
T cd05739          42 LTNIY--ESANYTCVAISSLGMIEATAQVT   69 (69)
T ss_pred             Eeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence            88764  78999999999999998888763

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.54  E-value=9.1e-14  Score=99.39  Aligned_cols=78  Identities=19%  Similarity=0.264  Sum_probs=59.3

Q ss_pred             EEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecc
Q psy16852        427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT  506 (579)
Q Consensus       427 l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~  506 (579)
                      |.|.+.|.|.|+++|+|+|..+..+.+....+....                            .......+.|+|.++.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~----------------------------~~~~~~~~~L~I~~~~   54 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEV----------------------------TTPTEYHGCLQFDNPT   54 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeec----------------------------ccccccEEEEEECCCC
Confidence            689999999999999999999976654332210000                            0012335569999999


Q ss_pred             cccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        507 RDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       507 ~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .+|+|.|+|.|.|.+|.+..++.|..
T Consensus        55 ~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971          55 HVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             cccCeEEEEEEEeCCCCeeeEEEeee
Confidence            99999999999999999998888753

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.54  E-value=9.6e-14  Score=101.95  Aligned_cols=81  Identities=26%  Similarity=0.388  Sum_probs=67.2

Q ss_pred             eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEE-EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852         16 VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL-ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANL   94 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~   94 (579)
                      ..|.+|+.+.|.|.+.|.|.|.+.|+|+|..+....... .........|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            458899999999999999999999999999987654331 2223345689999999999999999999999998888777


Q ss_pred             EE
Q psy16852         95 IV   96 (579)
Q Consensus        95 ~v   96 (579)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            64

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.54  E-value=4.1e-14  Score=99.14  Aligned_cols=70  Identities=26%  Similarity=0.453  Sum_probs=56.7

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      +.|.|.+.|.|.|.+.|++++..+..+.. ..                                     ....+.|.|.+
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~-------------------------------------~~~~~~L~I~~   42 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KK-------------------------------------LNNNKTLQLDN   42 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-eE-------------------------------------EcCCCEEEEcc
Confidence            47999999999999999999876643211 11                                     01234599999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ++.+|+|.|+|.|.|..|....++.|.|
T Consensus        43 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876          43 VLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             cCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            9999999999999999999999988876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.53  E-value=7.7e-14  Score=100.00  Aligned_cols=75  Identities=28%  Similarity=0.466  Sum_probs=63.5

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      |+.++|.|.+.|.|.|.+.|+++|..+...... .........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            789999999999999999999999988655432 122334478999999999999999999999999988888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.53  E-value=1.3e-13  Score=97.63  Aligned_cols=73  Identities=33%  Similarity=0.500  Sum_probs=60.5

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTV-ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      ++|.|.+.|.|.|.+.|+|+|..+... .++.+... .+..+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            579999999999999999999998743 34444333 23457999999999999999999999999888877754

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.53  E-value=1.7e-13  Score=95.97  Aligned_cols=71  Identities=34%  Similarity=0.657  Sum_probs=60.3

Q ss_pred             CEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         23 PALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        23 ~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      .++|.|.+.|.|.|.++|+|+|..+....++.....   ..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKE---HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEec---CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            478999999999999999999998876666554332   45888899999999999999999999888887764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.52  E-value=1.5e-13  Score=103.54  Aligned_cols=92  Identities=26%  Similarity=0.312  Sum_probs=68.8

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCC--CCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPD--NGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      ||.+.. +....+.+|+.+.|.|.+.|.|.| .|.|++++..+...  .++.+....                       
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~-----------------------   57 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP-----------------------   57 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEec-----------------------
Confidence            455543 455678999999999999999999 69999999888643  233322100                       


Q ss_pred             eecceeeeeeeCCeeEEEEeeccc-ccceeEEEEEEeCCeeEEEEEEE
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITR-DQIGDVTCRAENVAGSVTCTATL  530 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l  530 (579)
                              ...+..+.|.|.++.. +|.|.|+|.|.|..|.+...+.|
T Consensus        58 --------~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          58 --------SPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             --------CCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence                    0023346799999998 55999999999999999888776

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.52  E-value=1.6e-13  Score=104.94  Aligned_cols=82  Identities=18%  Similarity=0.170  Sum_probs=63.1

Q ss_pred             cCCCeEEEEEEEeeCCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeE
Q psy16852        421 AQSPATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV  499 (579)
Q Consensus       421 ~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~  499 (579)
                      .|..++|.|.+.|.|.|.+.|+++|..+... .++.+....                               ......+.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~-------------------------------~~~~~~s~   70 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEH-------------------------------TGTVHTSI   70 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeec-------------------------------cCccceeE
Confidence            5678999999999999999999999988543 233221100                               00112366


Q ss_pred             EEEeecc-cccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        500 LLISKIT-RDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       500 l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      |+|.++. .+|.|.|+|.|.|.+|.+..++.|.|.
T Consensus        71 L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~  105 (109)
T cd05773          71 LTIINVSAALDYALFTCTAHNSLGEDSLDIQLVST  105 (109)
T ss_pred             EEECcCCccCCCEEEEEEEEeCCccCcEEEEEEec
Confidence            9999997 589999999999999999999999875

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.52  E-value=3.1e-13  Score=109.30  Aligned_cols=129  Identities=23%  Similarity=0.405  Sum_probs=90.0

Q ss_pred             EEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEee-CC-CeEEEe
Q psy16852        365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWY  442 (579)
Q Consensus       365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~v~W~  442 (579)
                      +|.|.+++.+|+|.|.|.+.+..+.....+.|.|..      +|.+...+.......|+.++|.|.+.|. |. ++|.|+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~------~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~   75 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE------PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWT   75 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec------CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence            699999999999999999999888888888998875      5666554444444578999999999985 54 489999


Q ss_pred             eCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      ++|......   .+.   ..+   .......+...|.|+...              .|.+..-..++.+.|+|.|.+..-
T Consensus        76 ~~g~~~~~~---~~~---~~~---~~~~~~~~~~dgt~~~~s--------------~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          76 REPPGDSPP---PVS---LSN---VSFSSHRQHQDGTYSLSS--------------HLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             ECCCCCccc---eec---cCC---eEecceEeCCCCCEEEEE--------------EEEecCCccCCCCEEEEEEEcCCC
Confidence            988542210   000   000   111123334455565443              388877777778899999987643

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.52  E-value=1.3e-13  Score=105.36  Aligned_cols=92  Identities=28%  Similarity=0.542  Sum_probs=67.5

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC----CeeEEEcCCCCeEEEEEccccCCCceeEEE
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN----GHTMEFNPTTGECVLSISEATPQDEAVYSV  482 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c  482 (579)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....    ...+                          
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--------------------------   54 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRI--------------------------   54 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceE--------------------------
Confidence            4777777888899999999999999999999999999998886521    1111                          


Q ss_pred             EeecceeeeeeeCCeeEEEE--eecccccceeEEEEEEeCCee-EEEEEEEEE
Q psy16852        483 KASSTETKIMTDGNRSVLLI--SKITRDQIGDVTCRAENVAGS-VTCTATLSL  532 (579)
Q Consensus       483 ~~~~~~~~~~~~~~~~~l~i--~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v  532 (579)
                              +..++....+.+  ..++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus        55 --------~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          55 --------VLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             --------EecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence                    011122222333  234689999999999999998 667777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.52  E-value=2.1e-13  Score=101.37  Aligned_cols=86  Identities=21%  Similarity=0.300  Sum_probs=61.2

Q ss_pred             CeeecCCCceeeecC---CCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        408 PKFTKPLKPVIAEAQ---SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       408 p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      |.|...+....+.+|   +.++|.|.+.|.|.|+++|+++|..+..........  .                       
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~--~-----------------------   56 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL--V-----------------------   56 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE--E-----------------------
Confidence            455555666655555   579999999999999999999999885432211111  0                       


Q ss_pred             ecceeeeeeeCCeeEEEEeecc-cccceeEEEEEEeCCeeEEE-EEEE
Q psy16852        485 SSTETKIMTDGNRSVLLISKIT-RDQIGDVTCRAENVAGSVTC-TATL  530 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l  530 (579)
                                  .+.|.|.++. .+|+|.|+|.|+|.+|.... .+.|
T Consensus        57 ------------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          57 ------------AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             ------------CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence                        1237887754 58999999999999997654 4444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.52  E-value=1.3e-13  Score=101.93  Aligned_cols=85  Identities=26%  Similarity=0.341  Sum_probs=60.3

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeC----CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        422 QSPATLKATVTGRPTPSICWYRG----KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~----~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      |+.++|.|.+.|.|.|.|+|+++    +..+..+...........+                          ....+...
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~   54 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAG--------------------------VNTTDKEM   54 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCC--------------------------ceecCCce
Confidence            68899999999999999999984    3344322211111000000                          00112234


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      +.|+|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV   89 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence            67999999999999999999999999999999987

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.52  E-value=7.5e-14  Score=96.35  Aligned_cols=69  Identities=23%  Similarity=0.315  Sum_probs=57.7

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      +.|.|.+.|.|.|.+.|||||..+.....+     .....|.|.+++.+|+|.|+|.|.|..|....+.++.++
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF-----KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE-----ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            479999999999999999999999755322     123579999999999999999999999988777766653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.51  E-value=1.3e-13  Score=97.47  Aligned_cols=73  Identities=36%  Similarity=0.539  Sum_probs=63.2

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      |+.+.|.|.+.|.|.+.++|++++..+....++...   ....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW---PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC---CCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            789999999999999999999999998766665432   2357999999999999999999999999888877764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.51  E-value=1.2e-13  Score=98.36  Aligned_cols=74  Identities=26%  Similarity=0.486  Sum_probs=61.5

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      |+..|.++.+.+|+++.|+|.+.|.|.| .|.|+|+|..+....      ....+.|.|..+  .|+|.|.|.|.|..|.
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~   72 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGL--NETSKFSCEAHNAKGV   72 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence            5678999999999999999999999999 799999999886411      112357888877  4789999999999996


Q ss_pred             eEE
Q psy16852         88 ATC   90 (579)
Q Consensus        88 ~~~   90 (579)
                      ..+
T Consensus        73 ~~s   75 (81)
T cd05749          73 TTS   75 (81)
T ss_pred             EEe
Confidence            654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.51  E-value=9.8e-14  Score=99.51  Aligned_cols=78  Identities=15%  Similarity=0.218  Sum_probs=62.9

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ....+.+|+.+.|.|.+.+. .+.+.|+|+|.+|..+.++.+.                                     
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~-------------------------------------   43 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT-------------------------------------   43 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-------------------------------------
Confidence            34568899999999999985 5689999999888655443321                                     


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                        ...|.|.+++.+|+|.|+|.|.|..|.....+.|+|
T Consensus        44 --~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973          44 --GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             --CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence              124899999999999999999999999888887764

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.51  E-value=1.8e-13  Score=97.60  Aligned_cols=72  Identities=25%  Similarity=0.481  Sum_probs=54.8

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      ++|.|.+.|.|.|.+.|+|+|.++........ .                                   ....+.|.|.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~-~-----------------------------------~~~~~~L~I~~   44 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYS-V-----------------------------------SSKERTLTLRS   44 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEE-E-----------------------------------eCCCCEEEEee
Confidence            58999999999999999999998855432111 0                                   11123599999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      +..+|+|.|+|.|.|.+|....+..+.|
T Consensus        45 ~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760          45 AGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            9999999999999999998765544444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.51  E-value=1.4e-13  Score=101.73  Aligned_cols=81  Identities=28%  Similarity=0.564  Sum_probs=66.3

Q ss_pred             CCccccccCceeeeCCC---CEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeCCEEEEEEcCCC-CCCCEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQ---PALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPT-KEDIGVYTCK   80 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~---~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~   80 (579)
                      +|.|..+|.++.+.++.   .+.|.|.+.|.|.|.++|+|++..+... .++  ...  ...|.|.++. .+|+|.|+|.
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~--~~~--~g~L~I~~~~~~~D~G~Y~C~   76 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY--SMV--GGNLVINNPDKYKDAGRYVCI   76 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE--EEE--CCEEEECcCCcCCCCEEEEEE
Confidence            58899999998777655   8999999999999999999999988543 333  222  2579999885 6899999999


Q ss_pred             EEcCCeeeEE
Q psy16852         81 ATNIGGVATC   90 (579)
Q Consensus        81 ~~~~~g~~~~   90 (579)
                      |.|..|...+
T Consensus        77 A~N~~G~~~s   86 (93)
T cd05849          77 VSNIYGKVRS   86 (93)
T ss_pred             EEeCcceEEE
Confidence            9999997655

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.51  E-value=2.5e-13  Score=95.43  Aligned_cols=70  Identities=29%  Similarity=0.416  Sum_probs=57.5

Q ss_pred             EEEEEEeeCCCeeEEEECCEEecCCCCEEEEE-----eCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852         26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITT-----VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI   95 (579)
Q Consensus        26 l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~   95 (579)
                      |.|.+.|.|.|.|+|||||++|..+.+.....     ....+.|.|.+++.+|+|.|+|.|+|..|....++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            78999999999999999999998665432221     12356899999999999999999999999888776554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.51  E-value=3e-13  Score=99.43  Aligned_cols=79  Identities=20%  Similarity=0.389  Sum_probs=62.0

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      .++.+.+|+.++|.|.+.|. .|.+.|++++..+... +..+                                     .
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~-------------------------------------~   51 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL-------------------------------------S   51 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE-------------------------------------e
Confidence            34678999999999999999 9999999999887432 2111                                     1


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  532 (579)
                      ...+.|+|.+++++|+|.|+|.|.|..|.. ...+.|.|
T Consensus        52 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          52 NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            123359999999999999999999999974 44666765

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.50  E-value=3.2e-13  Score=96.56  Aligned_cols=70  Identities=30%  Similarity=0.401  Sum_probs=58.2

Q ss_pred             EEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe-------CCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852         26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTV-------ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI   95 (579)
Q Consensus        26 l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~   95 (579)
                      |.|.+.|.|.|.|+|||||+.+..+........       ...+.|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            789999999999999999999986654433221       2356899999999999999999999999988877665

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.50  E-value=2.7e-13  Score=96.81  Aligned_cols=77  Identities=14%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             CCeEEEEEEEe--eCCCeEEEeeCCEEcCCC--C-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        423 SPATLKATVTG--RPTPSICWYRGKEEILPD--N-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       423 ~~~~l~C~~~g--~p~~~v~W~~~~~~l~~~--~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      +++.|.|.+.+  .+++.|.|+++|.+|..+  . ++...                                  ......
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~----------------------------------~~~~~~   46 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERV----------------------------------GGQDSA   46 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEe----------------------------------ccCCCC
Confidence            46899999976  447799999999999532  1 11110                                  000123


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      +.|+|.+++.+|+|+|+|.|.|.+++..+++.|.|+
T Consensus        47 ~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~   82 (85)
T cd05853          47 GDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR   82 (85)
T ss_pred             CcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence            459999999999999999999999999999999986

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.50  E-value=1.8e-13  Score=95.67  Aligned_cols=70  Identities=26%  Similarity=0.365  Sum_probs=59.2

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      +.|.|.+.|.|.|.+.|+|+|..+..+.++    .....+|.|.+++.+|+|.|+|.|.|..|....+..+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~----~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT----KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE----EcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            479999999999999999999998766432    2234789999999999999999999999988777777664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.50  E-value=2.7e-13  Score=99.19  Aligned_cols=80  Identities=23%  Similarity=0.337  Sum_probs=60.2

Q ss_pred             CCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852        423 SPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL  500 (579)
Q Consensus       423 ~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l  500 (579)
                      +.++|.|.+.|.|.|  ++.|+++|..+.......        .               |.        ........+.|
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~--------~---------------~~--------~~~~~~~~~~L   49 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGG--------H---------------YR--------RVGGKDSNGDL   49 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCc--------c---------------EE--------EEecccccceE
Confidence            478999999999988  679999998875332100        0               00        00011234469


Q ss_pred             EEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        50 ~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   82 (85)
T cd04970          50 MIRNAQLKHAGKYTCTAQTVVDSLSASADLIVR   82 (85)
T ss_pred             EEccCCHHhCeeeEEEEecCCCcEEEEEEEEEE
Confidence            999999999999999999999999999999986

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.50  E-value=1.6e-13  Score=97.71  Aligned_cols=73  Identities=32%  Similarity=0.580  Sum_probs=55.6

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      ++|.|.+.|.|.|.++|+|++....... ...+.                                   .....+.|.|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~-----------------------------------~~~~~~~L~I~   45 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMH-----------------------------------VMPEDDVFFIV   45 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceE-----------------------------------EecCCCEEEEe
Confidence            4799999999999999999876432211 10110                                   01122359999


Q ss_pred             ecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        504 KITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      +++.+|+|.|+|.|.|..|....++.|.|
T Consensus        46 ~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763          46 DVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             eCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            99999999999999999999999999986

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.49  E-value=8.1e-14  Score=102.93  Aligned_cols=83  Identities=22%  Similarity=0.282  Sum_probs=65.8

Q ss_pred             ccCceeeeCCCCEEEEEEEEe-----eCCCeeEEEECCEEecCC--CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEG-----HPLPTMTWQKDGTELHAT--EHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~-----~~~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      .++...+.+|+++.|.|.+.+     .|.+.|.|||+|..+...  ...++..  ....|.|.+++.+|+|.|+|.+.|.
T Consensus         5 ~~~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~   82 (94)
T cd05756           5 VDKKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNS   82 (94)
T ss_pred             eeeEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCC
Confidence            356788999999999999988     578899999999765422  2222222  2368999999999999999999999


Q ss_pred             CeeeEEEEEEEE
Q psy16852         85 GGVATCSANLIV   96 (579)
Q Consensus        85 ~g~~~~~~~~~v   96 (579)
                      .|.....+.|.|
T Consensus        83 ~g~~~~~~~L~v   94 (94)
T cd05756          83 TYCMKVSISLTV   94 (94)
T ss_pred             CccEEEEEEEEC
Confidence            998888776654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.49  E-value=5.4e-13  Score=100.45  Aligned_cols=88  Identities=24%  Similarity=0.317  Sum_probs=70.3

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCC--CCEEEEEe----CCEEEEEEcCCCC-CCCEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHAT--EHYLITTV----ESVSTLEIINPTK-EDIGVY   77 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~--~~~~~~~~----~~~~~L~i~~~~~-~d~G~Y   77 (579)
                      ||.+. .+....+.+|+.++|.|.+.|.|.| .+.|++++..+...  .++.+...    ...++|+|.+++. +|.|.|
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            67664 4677889999999999999999998 69999999988653  45554433    2246899999999 559999


Q ss_pred             EEEEEcCCeeeEEEEEE
Q psy16852         78 TCKATNIGGVATCSANL   94 (579)
Q Consensus        78 ~C~~~~~~g~~~~~~~~   94 (579)
                      +|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999987776544

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.49  E-value=5e-13  Score=98.91  Aligned_cols=86  Identities=27%  Similarity=0.436  Sum_probs=66.6

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      +...|....+.+|+.+.|.|.+.|.|. .+.|++ ++..+....++..... ...++|+|.+++.+|+|.|+|.|.|..|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            345688899999999999999999875 999998 6776665444443332 3467999999999999999999999865


Q ss_pred             -eeEEEEEEE
Q psy16852         87 -VATCSANLI   95 (579)
Q Consensus        87 -~~~~~~~~~   95 (579)
                       ....++.|.
T Consensus        82 ~~~~~sv~l~   91 (92)
T cd04977          82 TESEATVNLK   91 (92)
T ss_pred             CcceeEEEEE
Confidence             445555543

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.49  E-value=2.2e-13  Score=96.14  Aligned_cols=70  Identities=26%  Similarity=0.483  Sum_probs=56.7

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      ++|.|.+.|.|.|.+.|++++..+.... ...                                     ....+.|.|.+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~-------------------------------------~~~~~~L~i~~   42 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-TKF-------------------------------------ENFNKTLKIDN   42 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-eeE-------------------------------------ecCCCEEEECC
Confidence            5799999999999999999987764321 110                                     11234599999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus        43 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731          43 VSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            9999999999999999999999988876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.49  E-value=1.6e-13  Score=101.24  Aligned_cols=85  Identities=24%  Similarity=0.357  Sum_probs=59.3

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCC----EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGK----EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~----~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      |+.++|.|.+.|.|.|+|+|+|++    ..+.......           ..+....               ......+..
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~-----------~~~~~~~---------------~~~~~~~~~   54 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPY-----------VTVLKVA---------------GINTTDNES   54 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCce-----------EEEEEec---------------CCccccccc
Confidence            678999999999999999999964    2221111100           0000000               001112334


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ..|.|.+++.+|+|.|+|.|.|.+|...+++.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V   89 (90)
T cd04974          55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV   89 (90)
T ss_pred             ceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence            56999999999999999999999999999999987

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.48  E-value=5e-13  Score=98.15  Aligned_cols=94  Identities=22%  Similarity=0.290  Sum_probs=69.3

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      ||.+ .......+.+|+.++|.|.+.+.|+| .|.|.+++..+..+.                        .++|..+-.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~------------------------~~r~~I~~~   56 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGT------------------------SERYTVERT   56 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCC------------------------CCCEEEEEE
Confidence            4555 45566778899999999999889988 789999877654321                        112222111


Q ss_pred             cceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCeeEEEEEEE
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSVTCTATL  530 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l  530 (579)
                           ....+..+.|+|.++...| .|.|.|.|.|.+|.+...+.|
T Consensus        57 -----~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          57 -----STGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             -----ccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence                 1224677889999998766 799999999999999888876

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.48  E-value=4.1e-13  Score=98.21  Aligned_cols=78  Identities=28%  Similarity=0.470  Sum_probs=63.0

Q ss_pred             CCEEEEEEEEeeCCC--eeEEEECCEEecCCC---CEE-EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852         22 QPALFTCKVEGHPLP--TMTWQKDGTELHATE---HYL-ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI   95 (579)
Q Consensus        22 ~~~~l~C~~~~~~~~--~v~W~~~g~~~~~~~---~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~   95 (579)
                      ++++|.|.+.+.|.+  .+.|+++|..+....   .+. .......+.|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            578999999998877  679999999886432   222 22223457899999999999999999999999999999999


Q ss_pred             EEec
Q psy16852         96 VLEK   99 (579)
Q Consensus        96 v~~~   99 (579)
                      |.++
T Consensus        81 V~~p   84 (85)
T cd04970          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            8753

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.48  E-value=2.5e-13  Score=99.21  Aligned_cols=78  Identities=22%  Similarity=0.448  Sum_probs=62.3

Q ss_pred             eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      ....|+.++|.|.+.|.|.|.+.|++++..+........                                     ....
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-------------------------------------~~~~   47 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-------------------------------------RKKK   47 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-------------------------------------cCce
Confidence            356799999999999999999999999887754322110                                     1123


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      +.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        48 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856          48 WTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             EEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            45999999999999999999999999888887764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.48  E-value=2.8e-13  Score=96.77  Aligned_cols=78  Identities=21%  Similarity=0.312  Sum_probs=62.3

Q ss_pred             CCEEEEEEEEeeC--CCeeEEEECCEEecC--CC-CEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852         22 QPALFTCKVEGHP--LPTMTWQKDGTELHA--TE-HYLITTV-ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI   95 (579)
Q Consensus        22 ~~~~l~C~~~~~~--~~~v~W~~~g~~~~~--~~-~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~   95 (579)
                      +++.|.|.+.+.+  .+.|.|++||+.|..  .. ++..... ...+.|+|.+++.+|+|.|+|.|.|..+....++.|+
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            5789999997644  678999999999963  22 3322211 2346899999999999999999999999999999999


Q ss_pred             EEec
Q psy16852         96 VLEK   99 (579)
Q Consensus        96 v~~~   99 (579)
                      |.++
T Consensus        81 V~~p   84 (85)
T cd05853          81 VRGP   84 (85)
T ss_pred             EecC
Confidence            9754

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.48  E-value=3.3e-13  Score=101.13  Aligned_cols=86  Identities=29%  Similarity=0.505  Sum_probs=66.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCC-----CCCCCEEEEEEEEc
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINP-----TKEDIGVYTCKATN   83 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~   83 (579)
                      |+..|.+..+.+|++++|.|.+.|.|.|.|.|+|+|..+......+..... ...|.|.++     +.+|+|.|+|.|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP-NGSLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc-CCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            667899999999999999999999999999999999988754432222222 234666665     68999999999999


Q ss_pred             C-CeeeE-EEEEEE
Q psy16852         84 I-GGVAT-CSANLI   95 (579)
Q Consensus        84 ~-~g~~~-~~~~~~   95 (579)
                      . .|... ..+.|+
T Consensus        81 ~~~G~~~s~~~~l~   94 (95)
T cd05722          81 DSLGSIVSRTARLT   94 (95)
T ss_pred             CccCcEEEeeeEEe
Confidence            9 88764 345544

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.48  E-value=2.7e-13  Score=95.03  Aligned_cols=70  Identities=27%  Similarity=0.476  Sum_probs=58.4

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      +.|.|.+.|.|.|.+.|+|++..+.... .  .......+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-T--KKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-e--eEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            5799999999999999999998775432 2  22334578999999999999999999999999888777765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.48  E-value=5.7e-13  Score=98.62  Aligned_cols=83  Identities=20%  Similarity=0.323  Sum_probs=61.6

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEee-CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      +....+..|+.+.|.|.+.|.|+ .+.|++ ++..+....++.+..                                  
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~----------------------------------   51 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQ----------------------------------   51 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEe----------------------------------
Confidence            34567889999999999999975 999998 555554433332211                                  


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeCCe-eEEEEEEEE
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENVAG-SVTCTATLS  531 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~  531 (579)
                      .....++|+|.+++.+|+|.|+|.|.|..| ...+++.|.
T Consensus        52 ~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~   91 (92)
T cd04977          52 NDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK   91 (92)
T ss_pred             CCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence            123456799999999999999999999976 456666665

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.48  E-value=4.3e-13  Score=95.53  Aligned_cols=72  Identities=24%  Similarity=0.454  Sum_probs=56.1

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      ..+.+..+..|+.+.|.|.+.|.|.| +|.|+++|.++....                                      
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~--------------------------------------   44 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP--------------------------------------   44 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC--------------------------------------
Confidence            34566789999999999999999999 799999998874310                                      


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEE
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC  526 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  526 (579)
                         ....+.|.|..+  .|.|.|.|.|+|.+|....
T Consensus        45 ---~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          45 ---APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             ---CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence               012234777776  4689999999999996553

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.48  E-value=3.7e-13  Score=95.97  Aligned_cols=72  Identities=31%  Similarity=0.552  Sum_probs=56.7

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE--EEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS--ANLIV   96 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~--~~~~v   96 (579)
                      ++|.|.+.|.|.|.++|+|+|..+...... .........|.|.+++.+|+|.|+|.|.|..|....+  ++|.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGN-YSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCcc-EEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            589999999999999999999998654321 1223334689999999999999999999999977544  44444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.48  E-value=2e-13  Score=95.32  Aligned_cols=69  Identities=26%  Similarity=0.541  Sum_probs=55.4

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      ++|.|.+.|.|+|.+.|++++..+... ++.+.                                      ....|.|.+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--------------------------------------~~~~L~I~~   41 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL--------------------------------------DDKSLKIRN   41 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEe--------------------------------------eCCEEEECc
Confidence            579999999999999999997765322 22110                                      123499999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ++.+|+|.|+|.|.|..|....++.|.|
T Consensus        42 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725          42 VTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            9999999999999999999999888864

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.48  E-value=5.3e-13  Score=98.59  Aligned_cols=84  Identities=23%  Similarity=0.341  Sum_probs=59.7

Q ss_pred             CeeecCCCceeeec---CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        408 PKFTKPLKPVIAEA---QSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       408 p~~~~~~~~~~~~~---g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      |.|...+....+.+   |+.+.|.|.+.|.|.|+++|+|++..+.... ++.+                           
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~---------------------------   54 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM---------------------------   54 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE---------------------------
Confidence            45555555544433   4479999999999999999999998874322 1111                           


Q ss_pred             eecceeeeeeeCCeeEEEEeecc-cccceeEEEEEEeCCeeEEE-EEEE
Q psy16852        484 ASSTETKIMTDGNRSVLLISKIT-RDQIGDVTCRAENVAGSVTC-TATL  530 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l  530 (579)
                                  ..+.|.|.++. .+|+|.|+|.|.|.+|.... .+.|
T Consensus        55 ------------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          55 ------------VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             ------------ECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence                        01348888875 58999999999999997644 4444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.47  E-value=2.5e-13  Score=94.58  Aligned_cols=68  Identities=34%  Similarity=0.595  Sum_probs=58.2

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANL   94 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~   94 (579)
                      |.|.|.+.|.|.|.+.|+|+|..+....++.+.   ....|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS---PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEEC---CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            579999999999999999999988766655432   23689999999999999999999999988877655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.47  E-value=4.1e-13  Score=95.95  Aligned_cols=74  Identities=28%  Similarity=0.455  Sum_probs=60.0

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      +.|.|.+.|.|.|.+.|+|++..+..+.+..+..                                   .+..+.|.|.+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~-----------------------------------~~~~~~l~I~~   45 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTL-----------------------------------IANGSELHISN   45 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEE-----------------------------------eCCCCEEEECc
Confidence            4799999999999999999999886543322211                                   12234599999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ++.+|.|.|+|.|.|..|.+..++.|.|.
T Consensus        46 ~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736          46 VRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            99999999999999999999999999875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.47  E-value=1.2e-13  Score=97.81  Aligned_cols=67  Identities=18%  Similarity=0.301  Sum_probs=57.2

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      |.+...|+...+.+|++++|+|.+.+.|. ..+.|||||..+..          ....|.|.++ .+|+|.|+|+|.+.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            56788899999999999999999988765 47999999998732          2257999999 99999999999764

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.47  E-value=5.8e-13  Score=92.13  Aligned_cols=68  Identities=28%  Similarity=0.485  Sum_probs=55.9

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANL   94 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~   94 (579)
                      |+.++|.|.+.|.|.|.|+|+|+|..+.......    .....|+|.++.  |+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~----~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMP----VGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCcccee----cCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            7899999999999999999999999886544322    123579999874  8999999999999988777655

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.47  E-value=5.4e-13  Score=94.82  Aligned_cols=73  Identities=30%  Similarity=0.471  Sum_probs=57.4

Q ss_pred             CCCeEEEEEEEeeCCCeEEEee-CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL  500 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l  500 (579)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+..+ .                                     ..+.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-~-------------------------------------~~~~L   42 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV-Y-------------------------------------DNGTL   42 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE-e-------------------------------------cCCEE
Confidence            7889999999999999999997 5555543332211 0                                     12348


Q ss_pred             EEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        501 LISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus        43 ~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764          43 DILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             EEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            89999999999999999999999988888764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.46  E-value=4.7e-13  Score=94.64  Aligned_cols=72  Identities=24%  Similarity=0.418  Sum_probs=55.0

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      ++|.|.+.|.|.|.|.|++++.++.......+..                                    ...+.|.|.+
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~------------------------------------~~~g~L~i~~   44 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ------------------------------------LRSGALQIEN   44 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE------------------------------------cCCcEEEECC
Confidence            4799999999999999999998875322111110                                    0122489999


Q ss_pred             cccccceeEEEEEEeCCee-EEEEEEEEE
Q psy16852        505 ITRDQIGDVTCRAENVAGS-VTCTATLSL  532 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v  532 (579)
                      ++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus        45 ~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738          45 SEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            9999999999999999997 467777776

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=4.1e-13  Score=98.98  Aligned_cols=80  Identities=34%  Similarity=0.545  Sum_probs=64.8

Q ss_pred             ccCceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecCC-CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeE
Q psy16852         12 KIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVAT   89 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~   89 (579)
                      .|.+..+.+|+++.|.|.+ .+.|.+.+.|+++|..+... .++...   ....|.|.+++.+|+|.|+|.+.|..|...
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV---DDGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc---cCCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            5778899999999999998 68888999999999988763 333322   135899999999999999999999988764


Q ss_pred             E-EEEE
Q psy16852         90 C-SANL   94 (579)
Q Consensus        90 ~-~~~~   94 (579)
                      . .+.+
T Consensus        79 s~~~~l   84 (86)
T cd05724          79 SAAARL   84 (86)
T ss_pred             eeeEEE
Confidence            4 3443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.46  E-value=3.1e-13  Score=96.24  Aligned_cols=73  Identities=34%  Similarity=0.615  Sum_probs=57.6

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEe-cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTEL-HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      ++|.|.+.|.|.|.++|+|+|... ......+.........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            479999999999999999998643 2222222233333458999999999999999999999999888888877

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=3.4e-13  Score=99.78  Aligned_cols=83  Identities=28%  Similarity=0.474  Sum_probs=60.4

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |+.++|.|.+.|.|.|.+.|++++..+....                  .-.....+.|.         +.   ..+.|+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~------------------~~~~~~~~r~~---------v~---~~~~L~   50 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFS------------------YQPPQSSSRFS---------VS---QTGDLT   50 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeec------------------ccCCCCCCeEE---------EC---CCCeEE
Confidence            6889999999999999999999875431100                  00000111121         11   123599


Q ss_pred             EeecccccceeEEEEEEeCCeeEEEEEEEEEee
Q psy16852        502 ISKITRDQIGDVTCRAENVAGSVTCTATLSLLP  534 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  534 (579)
                      |.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus        51 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   83 (90)
T cd05726          51 ITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD   83 (90)
T ss_pred             EeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence            999999999999999999999999999999873

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.46  E-value=6.3e-13  Score=91.77  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      +.|.|.+.|.|.|++.|+|+|.++...... ...                                   +  ...|.|.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~-~~~-----------------------------------~--~~~L~I~~   42 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSR-YHV-----------------------------------D--GYSLVIKD   42 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcE-EEe-----------------------------------C--CCEEEECc
Confidence            479999999999999999999988653211 100                                   1  12499999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ++.+|+|.|+|.|.|..........+++
T Consensus        43 v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702          43 VTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            9999999999999999776666666554

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=8.9e-13  Score=97.15  Aligned_cols=80  Identities=24%  Similarity=0.415  Sum_probs=61.8

Q ss_pred             CCceeeecCCCeEEEEEE-EeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        414 LKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      +....+.+|+++.|.|.+ .|.|.|.+.|++++..+.... ++.+ .                                 
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~-~---------------------------------   48 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI-V---------------------------------   48 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE-c---------------------------------
Confidence            345678899999999998 789999999999998875532 1111 0                                 


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEE
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLS  531 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~  531 (579)
                          ..+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.
T Consensus        49 ----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~   85 (86)
T cd05724          49 ----DDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS   85 (86)
T ss_pred             ----cCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence                123599999999999999999999999754 455554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.45  E-value=7.6e-13  Score=96.65  Aligned_cols=79  Identities=29%  Similarity=0.458  Sum_probs=64.3

Q ss_pred             eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852         16 VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI   95 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~   95 (579)
                      +.+..|++++|.|.+.+.|.|.+.|+++|..+......  ........|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG--ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc--eecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            45778999999999999999999999999987644322  1223457899999999999999999999999877766654


Q ss_pred             E
Q psy16852         96 V   96 (579)
Q Consensus        96 v   96 (579)
                      |
T Consensus        82 v   82 (82)
T cd05856          82 V   82 (82)
T ss_pred             C
Confidence            3

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.44  E-value=7.4e-13  Score=97.89  Aligned_cols=76  Identities=33%  Similarity=0.455  Sum_probs=59.5

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEEC----CEEecCCCCEEEEE---------eCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKD----GTELHATEHYLITT---------VESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~----g~~~~~~~~~~~~~---------~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      |+.++|.|.+.|.|.|.|.|+|+    |..+..........         ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999994    44443322211111         112368999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy16852         88 ATCSANLIV   96 (579)
Q Consensus        88 ~~~~~~~~v   96 (579)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888888877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.44  E-value=1e-12  Score=93.81  Aligned_cols=74  Identities=38%  Similarity=0.600  Sum_probs=62.8

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      +.|.|.+.|.|.|.+.|+|++..+..+...+.........|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            46999999999999999999999876554444444555689999999999999999999999998888888774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.44  E-value=1.3e-12  Score=97.94  Aligned_cols=84  Identities=24%  Similarity=0.393  Sum_probs=60.5

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+..........                                 .
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~---------------------------------~   51 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ---------------------------------L   51 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE---------------------------------c
Confidence            3455677889999999999999999999999999886543211110                                 0


Q ss_pred             eeCCeeEEEEeec-----ccccceeEEEEEEeC-CeeE-EEEEEEEE
Q psy16852        493 TDGNRSVLLISKI-----TRDQIGDVTCRAENV-AGSV-TCTATLSL  532 (579)
Q Consensus       493 ~~~~~~~l~i~~~-----~~~d~G~Y~C~a~n~-~g~~-~~~~~l~v  532 (579)
                         ..+.|.|.++     ..+|+|.|+|.|.|. .|.. ...+.|.|
T Consensus        52 ---~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          52 ---PNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             ---cCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence               0112455554     578999999999999 9976 45666653

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.43  E-value=1.4e-12  Score=96.69  Aligned_cols=82  Identities=32%  Similarity=0.559  Sum_probs=64.8

Q ss_pred             CccccccCceeeeCC---CCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy16852          7 PRFIEKIQPVVSHQE---QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT-KEDIGVYTCKAT   82 (579)
Q Consensus         7 p~~~~~p~~~~v~~G---~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~   82 (579)
                      |.|+.+|.++.+.+|   +.+.|.|.+.|.|.+.++|++++..+............  ..|.|.++. .+|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC--CEEEEecCCccCCCEEEEEEEE
Confidence            778889999877655   57999999999999999999999988543322222222  478898887 499999999999


Q ss_pred             cCCeeeEE
Q psy16852         83 NIGGVATC   90 (579)
Q Consensus        83 ~~~g~~~~   90 (579)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (91)
T cd04967          80 NIVGTVLS   87 (91)
T ss_pred             cCCCEEEe
Confidence            99987655

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.43  E-value=9.2e-13  Score=94.13  Aligned_cols=74  Identities=30%  Similarity=0.437  Sum_probs=56.7

Q ss_pred             eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      +.|.|.+.| .|.|.+.|+++|..+....+...          +                      ++......+.|.|.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~----------~----------------------~~~~~~~~~~L~I~   48 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRN----------I----------------------KIRNKKKNSELQIN   48 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcce----------E----------------------EEEecCceEEEEEc
Confidence            479999999 99999999999998865433221          0                      01112334669999


Q ss_pred             ecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852        504 KITRDQIGDVTCRAENVAGSVTCTATL  530 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l  530 (579)
                      +++.+|+|.|+|.|.|.+|.+..++.+
T Consensus        49 ~~~~~D~G~Y~C~a~N~~G~~~~~~~~   75 (75)
T cd05750          49 KAKLADSGEYTCVVENILGNDTVTANV   75 (75)
T ss_pred             cCCcccCeEEEEEEEEcCCceeEEEeC
Confidence            999999999999999999998877653

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.42  E-value=5.9e-13  Score=98.34  Aligned_cols=82  Identities=13%  Similarity=0.265  Sum_probs=62.2

Q ss_pred             ceeeecCCCeEEEEEEEe-----eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        416 PVIAEAQSPATLKATVTG-----RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      ...+.+|+.+.|.|.+.|     .|.|.|.|+|++..+........                                 +
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~---------------------------------r   54 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERS---------------------------------R   54 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccc---------------------------------e
Confidence            456778999999999998     68889999999865432110000                                 0


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      +..  ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        55 ~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          55 MHQ--QKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV   94 (94)
T ss_pred             eee--cCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence            001  1245999999999999999999999999999988874

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.42  E-value=1.2e-12  Score=92.40  Aligned_cols=70  Identities=37%  Similarity=0.535  Sum_probs=57.9

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      ++|.|.+.|.|.|.+.|+|++..+.... .  ........|.|.+++.+|+|.|+|.|.|..|.....+.+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-T--KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-e--eEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            5799999999999999999998775432 2  22234468999999999999999999999998888777766

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.42  E-value=5.6e-12  Score=101.99  Aligned_cols=119  Identities=21%  Similarity=0.310  Sum_probs=82.2

Q ss_pred             EEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEE
Q psy16852         63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWY  140 (579)
Q Consensus        63 ~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~  140 (579)
                      +|+|.+++.+|+|.|+|.+.+..+.....+.|.|..      +|.+...+......+|+.+.|.|.+.++ |. +.|.|+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~------~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~   75 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE------PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWT   75 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec------CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence            699999999999999999998888888888888864      3444443444444478999999999885 54 599999


Q ss_pred             ECCEEccC----CCCceE--EEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        141 RGKEEILP----DNGHTM--EFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       141 ~~~~~~~~----~~~~~~--~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      +++.....    ......  .....++    .+.|.+.....++.+.|+|.+.+...
T Consensus        76 ~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          76 REPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             ECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            98754211    011110  0111112    24677776666677899999987643

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.42  E-value=6.8e-13  Score=92.64  Aligned_cols=69  Identities=41%  Similarity=0.640  Sum_probs=57.0

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      ++|.|.+.|.|.|.+.|+|++..+... ++...   ....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            579999999999999999998776543 33333   3357999999999999999999999998888777654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.42  E-value=9.7e-13  Score=93.80  Aligned_cols=67  Identities=22%  Similarity=0.502  Sum_probs=49.4

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      ++|.|.+.|.|.|+|+|+|+|..+.......+..                                   ....+.|.|..
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~-----------------------------------~~~~g~L~i~~   45 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTM-----------------------------------KPDSGTLVIDN   45 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEE-----------------------------------eCCCCEEEEec
Confidence            5799999999999999999999885433222222                                   11234477777


Q ss_pred             ccc----ccceeEEEEEEeCCeeEEE
Q psy16852        505 ITR----DQIGDVTCRAENVAGSVTC  526 (579)
Q Consensus       505 ~~~----~d~G~Y~C~a~n~~g~~~~  526 (579)
                      +..    +|+|.|+|.|.|.+|....
T Consensus        46 ~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733          46 MNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             cCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            753    6899999999999997543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.41  E-value=1.2e-12  Score=93.49  Aligned_cols=70  Identities=33%  Similarity=0.497  Sum_probs=57.5

Q ss_pred             EEEEEEEEe-eCCCeeEEEECCEEecCCCCEE---EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEE
Q psy16852         24 ALFTCKVEG-HPLPTMTWQKDGTELHATEHYL---ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN   93 (579)
Q Consensus        24 ~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~   93 (579)
                      +.|.|.+.| .|.+.+.|+|+|..+.......   .........|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            479999999 8999999999999987654432   333345689999999999999999999999998776553

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.41  E-value=1.9e-12  Score=91.49  Aligned_cols=72  Identities=36%  Similarity=0.565  Sum_probs=56.2

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee-EEEEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA-TCSANLIV   96 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-~~~~~~~v   96 (579)
                      ++|.|.+.|.|.|.|.|||++..+......+.... ....|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL-RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc-CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            47999999999999999999998863322222222 33579999999999999999999999875 45566655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.40  E-value=2e-12  Score=95.66  Aligned_cols=76  Identities=28%  Similarity=0.611  Sum_probs=62.1

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEec--------CCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELH--------ATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA   92 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~   92 (579)
                      |+.++|.|.+.+.|.|.+.|+++|..+.        ...++.+  . ....|+|.+++.+|+|.|+|.|.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v--~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV--S-QTGDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE--C-CCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            7899999999999999999999986531        1223322  2 235799999999999999999999999999999


Q ss_pred             EEEEEec
Q psy16852         93 NLIVLEK   99 (579)
Q Consensus        93 ~~~v~~~   99 (579)
                      .|.|.+.
T Consensus        78 ~l~V~~~   84 (90)
T cd05726          78 YLEVTDV   84 (90)
T ss_pred             EEEEeec
Confidence            9999753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.40  E-value=2.3e-12  Score=91.47  Aligned_cols=67  Identities=22%  Similarity=0.426  Sum_probs=48.0

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      +.|.|.+.|.|.|+|+|+++|.++.......+.+                                   ....++|.|..
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~-----------------------------------~~~~g~l~i~~   45 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTM-----------------------------------KPNTGTLVINI   45 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEE-----------------------------------eCCCceEEEec
Confidence            5799999999999999999998874332222221                                   11223466666


Q ss_pred             ccc----ccceeEEEEEEeCCeeEEE
Q psy16852        505 ITR----DQIGDVTCRAENVAGSVTC  526 (579)
Q Consensus       505 ~~~----~d~G~Y~C~a~n~~g~~~~  526 (579)
                      +..    .|+|.|+|.|.|.+|....
T Consensus        46 ~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874          46 MNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             cccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            653    3789999999999998654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.40  E-value=1.8e-12  Score=95.61  Aligned_cols=76  Identities=28%  Similarity=0.352  Sum_probs=58.6

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECC----EEecCCCC--EEEEE-------eCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDG----TELHATEH--YLITT-------VESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g----~~~~~~~~--~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      |+.++|.|.+.|.|.|.|+|+|++    ..+.....  .....       ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999963    33322211  11111       122357999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy16852         88 ATCSANLIV   96 (579)
Q Consensus        88 ~~~~~~~~v   96 (579)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            988888877

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=2.7e-12  Score=91.15  Aligned_cols=73  Identities=34%  Similarity=0.621  Sum_probs=59.0

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+....   ...+|.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY---DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe---cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7899999999999999999997 66666544433222   2357999999999999999999999998877776654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.39  E-value=1.2e-12  Score=92.64  Aligned_cols=67  Identities=13%  Similarity=0.183  Sum_probs=52.5

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      |.+...+....+.+|+.++|.|.+.+.|.+ .+.|+++|..+..+                                   
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~-----------------------------------   45 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT-----------------------------------   45 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc-----------------------------------
Confidence            345556666789999999999999988864 79999999877211                                   


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                                ...|+|.++ .+|+|.|+|.|.|.
T Consensus        46 ----------~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          46 ----------TNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             ----------CCeEEEeec-ccCCEEeEEECCCC
Confidence                      123788888 88899999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.38  E-value=2.2e-12  Score=93.77  Aligned_cols=81  Identities=25%  Similarity=0.361  Sum_probs=57.2

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |+.+.|.|.+.|.|.|.+.|+|++..   .....             +..-.  ..+.+            .....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~---~~~~~-------------~~~~~--~~~~~------------~~~~~~~L~   50 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHG---KENLI-------------MRPNH--VRGNV------------VVTNIGQLV   50 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCC---Cccee-------------ecCCc--ccCCE------------EEccccEEE
Confidence            78999999999999999999997421   00000             00000  00001            011235699


Q ss_pred             EeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      |.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        51 I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765          51 IYNAQPQDAGLYTCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             EccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence            9999999999999999999999999998874

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.38  E-value=2.8e-12  Score=93.24  Aligned_cols=76  Identities=34%  Similarity=0.611  Sum_probs=57.1

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCE---E-ecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGT---E-LHATEHY-LITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLI   95 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~---~-~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~   95 (579)
                      |+.++|.|.+.|.|.|.+.|||++.   . +.....+ ..........|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7899999999999999999999742   1 1111111 111122346899999999999999999999999888877765


Q ss_pred             E
Q psy16852         96 V   96 (579)
Q Consensus        96 v   96 (579)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.37  E-value=1.8e-12  Score=92.37  Aligned_cols=67  Identities=30%  Similarity=0.530  Sum_probs=53.3

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCC----CCCEEEEEEEEcCCeeeEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK----EDIGVYTCKATNIGGVATC   90 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~g~~~~   90 (579)
                      ++|.|.+.|.|.|.|+|+|+|..+.......+......+.|.|..+..    +|+|.|+|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            579999999999999999999988654333344444557888888754    7999999999999997654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.37  E-value=4.5e-12  Score=90.03  Aligned_cols=66  Identities=23%  Similarity=0.370  Sum_probs=47.8

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCC--CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEE
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILP--DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI  502 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i  502 (579)
                      +.|.|.+.|+|.|.|+|+++|..+..  +.++.+                                     ....+.|.|
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~-------------------------------------~~~~~~L~i   43 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM-------------------------------------RRRSGTLVI   43 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE-------------------------------------eCCCceEEE
Confidence            47999999999999999999987632  222221                                     112234777


Q ss_pred             eecc----cccceeEEEEEEeCCeeEEEE
Q psy16852        503 SKIT----RDQIGDVTCRAENVAGSVTCT  527 (579)
Q Consensus       503 ~~~~----~~d~G~Y~C~a~n~~g~~~~~  527 (579)
                      ..+.    .+|+|.|+|.|.|.+|.....
T Consensus        44 ~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875          44 DFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             eccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            7653    256999999999999976543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.37  E-value=3.8e-12  Score=90.38  Aligned_cols=68  Identities=25%  Similarity=0.477  Sum_probs=51.9

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCC----CCCCEEEEEEEEcCCeeeEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT----KEDIGVYTCKATNIGGVATCS   91 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~~~~~~g~~~~~   91 (579)
                      +.|.|.+.|.|.|.|+|+|+|..+......+.......++|.|..+.    .+|+|.|+|.|.|..|...++
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            47999999999999999999997743333333334445789998764    357999999999999976653

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.37  E-value=1.1e-11  Score=89.90  Aligned_cols=77  Identities=23%  Similarity=0.333  Sum_probs=57.4

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE--EEEEe--CCEEEEEEcCCCCCCCEEEEEEEEcCCe--eeEEEEEE
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELHATEHY--LITTV--ESVSTLEIINPTKEDIGVYTCKATNIGG--VATCSANL   94 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g--~~~~~~~~   94 (579)
                      |++++|+|.+.+.|.+.+.|+++++........  .....  ...+.|.|.+++.+|+|.|+|.|.|..+  ....++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            899999999999888999999987653221111  11111  1257899999999999999999998765  55666777


Q ss_pred             EEE
Q psy16852         95 IVL   97 (579)
Q Consensus        95 ~v~   97 (579)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.37  E-value=9e-12  Score=92.38  Aligned_cols=82  Identities=23%  Similarity=0.421  Sum_probs=57.6

Q ss_pred             CeeecCCCceeeec---CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        408 PKFTKPLKPVIAEA---QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       408 p~~~~~~~~~~~~~---g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      |.|...+....+..   |+.+.|.|.+.|.|.|.++|++++..+..........                          
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~--------------------------   55 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL--------------------------   55 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE--------------------------
Confidence            44555555544433   4579999999999999999999998874332211111                          


Q ss_pred             ecceeeeeeeCCeeEEEEeeccc-ccceeEEEEEEeCCeeEEE
Q psy16852        485 SSTETKIMTDGNRSVLLISKITR-DQIGDVTCRAENVAGSVTC  526 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~  526 (579)
                                 ....|.|.++.. +|+|.|+|.|.|.+|....
T Consensus        56 -----------~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          56 -----------VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             -----------ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence                       012388887764 8999999999999997543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.37  E-value=3.8e-12  Score=87.89  Aligned_cols=70  Identities=26%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       229 ~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                      +.|.|.+.|.|.|++.|+|+|.++.............|.|.++..+|+|.|+|.|.|..........+++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            4799999999999999999999987653222223457999999999999999999998777666665554

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.36  E-value=3.4e-12  Score=93.07  Aligned_cols=81  Identities=15%  Similarity=0.113  Sum_probs=59.9

Q ss_pred             CCCeEEEEEEEee--CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeE
Q psy16852        422 QSPATLKATVTGR--PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV  499 (579)
Q Consensus       422 g~~~~l~C~~~g~--p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~  499 (579)
                      |+.++|.|.+.|.  |.|.+.|++++..+.......       .      ...                 ........+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~-------~------~~~-----------------~~~~~~~~s~   50 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMV-------T------RQS-----------------LSEATELSST   50 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEee-------c------ccc-----------------cccceEEEEE
Confidence            7899999999999  888999999876553211000       0      000                 0001223567


Q ss_pred             EEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        500 LLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       500 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      |+|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        51 L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          51 LTIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             EEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            999999999999999999999999999998876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.36  E-value=4.7e-12  Score=90.38  Aligned_cols=75  Identities=24%  Similarity=0.357  Sum_probs=54.1

Q ss_pred             eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      +.|.|.+.+ .|.+.+.|+++|..+....+...         .+                      .+......+.|.|.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~---------~~----------------------~~~~~~~~~~L~I~   49 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDN---------KI----------------------KIRKKKKSSELQIS   49 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCc---------eE----------------------EEEeCCcEEEEEEC
Confidence            479999874 68889999999988753321000         00                      11112345669999


Q ss_pred             ecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852        504 KITRDQIGDVTCRAENVAGSVTCTATL  530 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l  530 (579)
                      +++.+|+|.|+|.|.|..|....++.+
T Consensus        50 ~~~~~DsG~Y~C~a~N~~g~~~~~~~~   76 (76)
T cd05895          50 KASLADNGEYKCMVSSKLGNDSVTANV   76 (76)
T ss_pred             cCCcccCEEEEEEEEeCCCceeEEEeC
Confidence            999999999999999999998877653

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.36  E-value=5.8e-12  Score=89.45  Aligned_cols=68  Identities=28%  Similarity=0.529  Sum_probs=51.7

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCC----CCCEEEEEEEEcCCeeeEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK----EDIGVYTCKATNIGGVATCS   91 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~g~~~~~   91 (579)
                      +.|.|.+.|.|.|+|+|+|+|..+..............++|.|..+..    .|+|.|+|.|.|..|...++
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            579999999999999999999987543333333334446777876654    47899999999999976653

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.35  E-value=4.7e-12  Score=92.34  Aligned_cols=76  Identities=24%  Similarity=0.286  Sum_probs=59.3

Q ss_pred             CCCEEEEEEEEee--CCCeeEEEECCEEecCCCCE---E--EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEE
Q psy16852         21 EQPALFTCKVEGH--PLPTMTWQKDGTELHATEHY---L--ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN   93 (579)
Q Consensus        21 G~~~~l~C~~~~~--~~~~v~W~~~g~~~~~~~~~---~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~   93 (579)
                      |++++|.|.+.+.  |.+.+.|++++..+......   .  .......+.|+|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7999999999998  77899999988765322110   0  011123578999999999999999999999998888888


Q ss_pred             EEE
Q psy16852         94 LIV   96 (579)
Q Consensus        94 ~~v   96 (579)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            776

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.35  E-value=1.1e-11  Score=91.97  Aligned_cols=83  Identities=19%  Similarity=0.268  Sum_probs=61.3

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE--------EecCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT--------ELHATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~--------~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .+.++.+.+|++++|.|.+.+.|.+.+.||+.+.        ....+.++..... ....+|+|.+++.+|+|.|+|.+.
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            4678999999999999999999989999986432        2223445544222 345789999999999999999998


Q ss_pred             cCCeeeEEEEEEE
Q psy16852         83 NIGGVATCSANLI   95 (579)
Q Consensus        83 ~~~g~~~~~~~~~   95 (579)
                      +..+ ....+.|+
T Consensus        83 t~~~-~~~~~~l~   94 (95)
T cd07701          83 TMPV-KTSKAYLT   94 (95)
T ss_pred             eecC-ccEEEEEE
Confidence            7433 24444544

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.34  E-value=2.3e-11  Score=89.36  Aligned_cols=88  Identities=25%  Similarity=0.353  Sum_probs=71.0

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCC--CCEEEEEe----CCEEEEEEcCCCCCC-CEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHAT--EHYLITTV----ESVSTLEIINPTKED-IGVY   77 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~--~~~~~~~~----~~~~~L~i~~~~~~d-~G~Y   77 (579)
                      ||.+ ...+.+.+.+|+.++|.|.+.+.|.| .|.|.+++..+..+  .++.+...    +..++|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            6655 67888999999999999999877776 68999988877543  56666544    357899999998766 8999


Q ss_pred             EEEEEcCCeeeEEEEEE
Q psy16852         78 TCKATNIGGVATCSANL   94 (579)
Q Consensus        78 ~C~~~~~~g~~~~~~~~   94 (579)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999988776554

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.34  E-value=1.4e-11  Score=89.24  Aligned_cols=81  Identities=17%  Similarity=0.223  Sum_probs=57.0

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |++++|.|.+.|.|.+.+.|++.+............                               ..+......++|.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~s~L~   49 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEE-------------------------------VKVPATTLRSTLT   49 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEE-------------------------------EecCCcEEEEEEE
Confidence            789999999999999999999877543111000000                               0011122356799


Q ss_pred             EeecccccceeEEEEEEeCCe--eEEEEEEEEEe
Q psy16852        502 ISKITRDQIGDVTCRAENVAG--SVTCTATLSLL  533 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~  533 (579)
                      |.+++.+|+|.|+|.|.|..+  ....++.|+|.
T Consensus        50 I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          50 FPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             ECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            999999999999999999877  56666676653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.32  E-value=1.1e-11  Score=88.42  Aligned_cols=70  Identities=26%  Similarity=0.443  Sum_probs=54.6

Q ss_pred             EEEEEEEEe-eCCCeeEEEECCEEecCCC----CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEE
Q psy16852         24 ALFTCKVEG-HPLPTMTWQKDGTELHATE----HYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN   93 (579)
Q Consensus        24 ~~l~C~~~~-~~~~~v~W~~~g~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~   93 (579)
                      +.|+|.+.+ .|.+.+.||++|+.+....    ++..........|.|.+++.+|+|.|+|.+.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999864 5778999999999886432    223333345688999999999999999999999988776554

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.32  E-value=2.5e-11  Score=87.04  Aligned_cols=69  Identities=20%  Similarity=0.327  Sum_probs=56.5

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      .|.+..+.+|+++.|.|.+.+ +.+.+.|++||..+..+.. +.....  ..|.|.+++.+|+|.|+|.+.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~-r~~~~~--~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESA-KYLLYR--DGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCc-eEEEEC--CcEEEeCCCHHHCEEEEEEEEec
Confidence            578899999999999999854 5679999999999976532 222222  46999999999999999999865

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.32  E-value=9.4e-12  Score=91.06  Aligned_cols=79  Identities=23%  Similarity=0.422  Sum_probs=64.2

Q ss_pred             ccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      +..|..+.+.+|+.++|.|.+.+ .|.+.+.|++++..+....      ......|.|.+++.+|+|.|+|.+.|..|..
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc------cccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence            45678889999999999999965 6778999999987654321      1123689999999999999999999999988


Q ss_pred             EEEEEE
Q psy16852         89 TCSANL   94 (579)
Q Consensus        89 ~~~~~~   94 (579)
                      ..++.|
T Consensus        79 ~~~~~l   84 (85)
T cd05754          79 EATATL   84 (85)
T ss_pred             eEEEEE
Confidence            876654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.31  E-value=8.7e-12  Score=92.08  Aligned_cols=83  Identities=23%  Similarity=0.374  Sum_probs=63.2

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC--CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC-eee
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVSTLEIINPTKEDIGVYTCKATNIG-GVA   88 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-g~~   88 (579)
                      +|..+.+.+|+++.|.|.+.+ |.+.+.||+++..+....  ..+....  ...|.|.+++.+|+|.|+|.+.+.. +..
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~   78 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQT   78 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCcccee
Confidence            467788999999999999976 777999999998776542  1222222  2459999999999999999998654 445


Q ss_pred             EEEEEEEEE
Q psy16852         89 TCSANLIVL   97 (579)
Q Consensus        89 ~~~~~~~v~   97 (579)
                      ..+..|.|.
T Consensus        79 ~~~~~l~V~   87 (89)
T cd04979          79 LATYSLNVL   87 (89)
T ss_pred             EeEEEEEEe
Confidence            556666664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.31  E-value=9.3e-12  Score=89.54  Aligned_cols=77  Identities=25%  Similarity=0.438  Sum_probs=51.3

Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      ++|.|.+.|+|.|.+.|++++..........                  ....|++         .+.   ..+.|.|.+
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~------------------~~~~~r~---------~~~---~~~~L~I~~   50 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHT------------------CCLAGRI---------QLL---SNGSLLIKH   50 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccc------------------cccCCCE---------EEe---cCCeEEECc
Confidence            5799999999999999999653321110000                  0011111         111   124599999


Q ss_pred             cccccceeEEEEEEeCCeeE-EEEEEEE
Q psy16852        505 ITRDQIGDVTCRAENVAGSV-TCTATLS  531 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~-~~~~~l~  531 (579)
                      +..+|+|.|+|.|.|..|.+ ...+.|+
T Consensus        51 v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734          51 VLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            99999999999999999976 5566665

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.30  E-value=4.7e-11  Score=87.86  Aligned_cols=81  Identities=22%  Similarity=0.384  Sum_probs=63.3

Q ss_pred             eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+.........                                  ......
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~----------------------------------~~~~~~   50 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGY----------------------------------KVRKKK   50 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEE----------------------------------EccCcE
Confidence            4667999999999999999999999998877543321110                                  001123


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ..|.|.+++.+|.|.|.|.|.|..|..+.++.|.|
T Consensus        51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v   85 (85)
T cd05729          51 WTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV   85 (85)
T ss_pred             EEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence            45999999999999999999999999988888864

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.30  E-value=9.6e-12  Score=89.72  Aligned_cols=72  Identities=22%  Similarity=0.325  Sum_probs=56.9

Q ss_pred             ccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      +.++....|.+|++++|+|.+.+ .+...+.|||+|..+...        .....|.|.+++.+|+|.|+|.+.+..+..
T Consensus         3 ~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753           3 LLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             EEECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            44555667999999999999853 455689999999876421        123689999999999999999999987744


Q ss_pred             E
Q psy16852         89 T   89 (579)
Q Consensus        89 ~   89 (579)
                      .
T Consensus        75 ~   75 (83)
T cd05753          75 S   75 (83)
T ss_pred             c
Confidence            3

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.30  E-value=5.6e-11  Score=87.69  Aligned_cols=71  Identities=17%  Similarity=0.279  Sum_probs=56.0

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe--------cCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL--------HATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~--------~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      ..++.+.+|+++.|.|.+.+.|.+.+.|++++..+        ....++.+... ....+|.|.+++.+|+|.|+|.+..
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            45789999999999999999999999999987643        12233332222 2358999999999999999999976

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.29  E-value=1.6e-11  Score=89.80  Aligned_cols=77  Identities=17%  Similarity=0.284  Sum_probs=60.5

Q ss_pred             CCCceeeecCCCeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      .+....+.+|+.++|.|.+.+ .|.+.+.|++++..+....   .                                   
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~-----------------------------------   48 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---M-----------------------------------   48 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---c-----------------------------------
Confidence            345567889999999999975 7888999999876542110   0                                   


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL  530 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  530 (579)
                         ...+.|.|.+++.+|+|.|+|.|.|..|...+++.|
T Consensus        49 ---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          49 ---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             ---ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence               012359999999999999999999999999988775

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.28  E-value=7e-11  Score=86.93  Aligned_cols=80  Identities=24%  Similarity=0.332  Sum_probs=64.4

Q ss_pred             eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEE-EEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852         16 VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLI-TTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANL   94 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~   94 (579)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ........|.|.+++.+|+|.|+|.+.|..|....+..|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            4577899999999999999899999999998765443322 222345689999999999999999999998887766665


Q ss_pred             E
Q psy16852         95 I   95 (579)
Q Consensus        95 ~   95 (579)
                      .
T Consensus        84 ~   84 (85)
T cd05729          84 D   84 (85)
T ss_pred             e
Confidence            4

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.27  E-value=6.1e-11  Score=85.08  Aligned_cols=68  Identities=15%  Similarity=0.213  Sum_probs=52.8

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      |....+..|+++.|.|.+. .|.+++.|+++|.++..+. ++.+    .+                              
T Consensus         3 P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~----~~------------------------------   47 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLL----YR------------------------------   47 (87)
T ss_pred             cceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEE----EC------------------------------
Confidence            4566789999999999986 4778999999999986553 2211    11                              


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                           ..|.|.+++.+|+|.|+|.|.+..
T Consensus        48 -----~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          48 -----DGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             -----CcEEEeCCCHHHCEEEEEEEEecc
Confidence                 128899999999999999998763

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.24  E-value=1.6e-11  Score=89.30  Aligned_cols=74  Identities=15%  Similarity=0.154  Sum_probs=57.3

Q ss_pred             cCceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         13 IQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      .+.+.+.+|+.+.|.|.. .+.|.+.|.|++++..+......+......++.|.|.+++.+|+|.|+|.|+|...
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence            455789999999999986 56788999999998764221111223444468999999999999999999998653

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.24  E-value=7.4e-11  Score=87.57  Aligned_cols=91  Identities=18%  Similarity=0.230  Sum_probs=59.4

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      .+..+.+|++++|.|.+.+.|.+.+.|++.+..+.       ..           .+-.....++|...        ...
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l-------~~-----------~~~~~~~~~r~~~~--------~~~   58 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTL-------YF-----------DDKKALRDNRIELV--------RAS   58 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEE-------EE-----------cCcccccCCCEEEE--------ECC
Confidence            56779999999999999999999999997432210       00           00000011222110        112


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .....|.|.+++.+|+|.|+|.+.+. .....++.|.|
T Consensus        59 ~~~~sL~I~~v~~~DsG~Y~C~~~t~-~~~~~~~~l~v   95 (95)
T cd07701          59 WHELSISISDVSLSDEGQYTCSLFTM-PVKTSKAYLTV   95 (95)
T ss_pred             CCcEEEEECcCCcccCEEEEEEeEee-cCccEEEEEEC
Confidence            34467999999999999999999985 44466666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.23  E-value=3.3e-11  Score=86.66  Aligned_cols=69  Identities=30%  Similarity=0.465  Sum_probs=51.1

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEec--------CCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee-EEEEEE
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELH--------ATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA-TCSANL   94 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-~~~~~~   94 (579)
                      ++|.|.+.|.|.|.+.|++++....        ...++..   ....+|.|.++..+|+|.|+|.|.|..|.. +.++.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL---LSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE---ecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            5899999999999999999753221        1222222   123689999999999999999999998866 344444


Q ss_pred             E
Q psy16852         95 I   95 (579)
Q Consensus        95 ~   95 (579)
                      .
T Consensus        78 ~   78 (79)
T cd05734          78 T   78 (79)
T ss_pred             e
Confidence            3

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.23  E-value=1.4e-10  Score=85.67  Aligned_cols=89  Identities=17%  Similarity=0.198  Sum_probs=58.5

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee-ee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI-MT  493 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~-~~  493 (579)
                      .+.++.+|+++.|.|.+.+.|.|.|.|++++..+..........                  .++|         .+ ..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~------------------~~r~---------~~~~~   57 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALR------------------DNRI---------QLVKS   57 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEe------------------CCeE---------EEEeC
Confidence            56779999999999999999999999999875432111111000                  0011         11 11


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEE
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS  531 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  531 (579)
                      ......|.|.++..+|+|.|+|.|.. .-...+.+.|.
T Consensus        58 ~~~~~~L~I~nV~~~D~G~YtC~~~t-~~~~~~~~~~~   94 (95)
T cd05882          58 TPTELIISISNVQLSDEGEYTCSIFT-MPVRTAKATVT   94 (95)
T ss_pred             CCceEEEEECCCCcccCEEEEEEEEe-eccccEEEEEE
Confidence            22346799999999999999999987 22344444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.23  E-value=7.5e-11  Score=86.43  Aligned_cols=79  Identities=18%  Similarity=0.289  Sum_probs=60.7

Q ss_pred             ceeeecCCCeEEEEEEEe-----eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        416 PVIAEAQSPATLKATVTG-----RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      .+.+..|+...|.|...+     +|.|.+.|+|++.++....+...                                  
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----------------------------------   49 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----------------------------------   49 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----------------------------------
Confidence            356778999999998643     35789999999998865432111                                  


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                           ..+.|.|.++..+|+|.|+|.|.|..|.....+...+.
T Consensus        50 -----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~~   87 (92)
T cd05757          50 -----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTIS   87 (92)
T ss_pred             -----cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEEE
Confidence                 22349999999999999999999999987777666553

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.22  E-value=4.8e-11  Score=87.46  Aligned_cols=78  Identities=26%  Similarity=0.339  Sum_probs=60.3

Q ss_pred             ceeeeCCCCEEEEEEEEe-----eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeE
Q psy16852         15 PVVSHQEQPALFTCKVEG-----HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVAT   89 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~-----~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~   89 (579)
                      ...+.+|+...|+|...+     +|.+.+.||||++++....... .   ....|.|.+++.+|+|.|+|.+.|..+...
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            467899999999998643     2467999999999987654332 1   447899999999999999999998876555


Q ss_pred             EEEEEEE
Q psy16852         90 CSANLIV   96 (579)
Q Consensus        90 ~~~~~~v   96 (579)
                      ..++.++
T Consensus        80 ~~~t~t~   86 (92)
T cd05757          80 YNVTRTI   86 (92)
T ss_pred             EEEEEEE
Confidence            5444433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.21  E-value=3.1e-10  Score=82.41  Aligned_cols=88  Identities=15%  Similarity=0.190  Sum_probs=68.1

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCe-EEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ...+.+|+.+.|.|.++++|+|+ +.|.+++..+.......+..              ....                -.
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~--------------~~~~----------------~~   61 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKS--------------RNES----------------NN   61 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEE--------------eccC----------------ce
Confidence            45689999999999999999997 99999987764332211111              0000                01


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ...+.|.+.+++.+|+|.|+|.|.|..+....++.|.|+
T Consensus        62 rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~  100 (101)
T cd05860          62 RYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence            245779999999999999999999999999999999875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.21  E-value=1e-10  Score=86.33  Aligned_cols=83  Identities=17%  Similarity=0.269  Sum_probs=59.6

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ....+.+|+.+.|.|.+.+ |.+++.|++++..+.......                      +           ++.. 
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~----------------------~-----------~~~~-   48 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPE----------------------E-----------RLLV-   48 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcC----------------------c-----------eEEE-
Confidence            4456889999999999986 888999999987764432100                      0           0000 


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCC-eeEEEEEEEEEe
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVA-GSVTCTATLSLL  533 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~  533 (579)
                       ....|.|.+++.+|+|.|+|.|.|.. +....+..|.|.
T Consensus        49 -~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~   87 (89)
T cd04979          49 -TEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL   87 (89)
T ss_pred             -cCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence             11228999999999999999998764 466677777764

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.19  E-value=6.2e-11  Score=86.24  Aligned_cols=74  Identities=15%  Similarity=0.153  Sum_probs=55.4

Q ss_pred             CCceeeecCCCeEEEEEE-EeeCCCeEEEeeCCEEc--CCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        414 LKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEI--LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~l--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      ..+..+.+|+.+.|.|.. .|.|.+.+.|++++.++  ..+.+..+                                  
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~----------------------------------   55 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFV----------------------------------   55 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEE----------------------------------
Confidence            345678899999999975 68899999999997654  22222221                                  


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                         +...+.|.|.+++.+|+|+|+|.|+|..+..
T Consensus        56 ---~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          56 ---SQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ---eCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence               1223449999999999999999999987554

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.19  E-value=1.4e-10  Score=84.89  Aligned_cols=72  Identities=15%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC--------------CCCEEEEE---eCCEEEEEEcCCCCCCCEEEE
Q psy16852         16 VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA--------------TEHYLITT---VESVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~--------------~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~   78 (579)
                      +.+.+|++|+|+|.+.+.+.+.+.||+++.....              ..++....   ..+...|+|.+++.+|+|.|+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            5688999999999998888889999987643211              12222222   334578999999999999999


Q ss_pred             EEEEcCCee
Q psy16852         79 CKATNIGGV   87 (579)
Q Consensus        79 C~~~~~~g~   87 (579)
                      |.+.|..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999876543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.19  E-value=1.5e-10  Score=84.11  Aligned_cols=79  Identities=32%  Similarity=0.579  Sum_probs=60.0

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      +|.+..++  ..+.+|+.++|+|.+.+.|.+.+.|++++..+.....          .|.|.+++.+|+|.|+|.+.+..
T Consensus         1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~   68 (80)
T PF13895_consen    1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGS   68 (80)
T ss_dssp             --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETT
T ss_pred             CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCC
Confidence            35555544  6689999999999999888889999999988763322          17788999999999999999865


Q ss_pred             e-eeEEEEEEEE
Q psy16852         86 G-VATCSANLIV   96 (579)
Q Consensus        86 g-~~~~~~~~~v   96 (579)
                      + ..+..+.|+|
T Consensus        69 ~~~~s~~~~v~V   80 (80)
T PF13895_consen   69 GSNTSTSVNVTV   80 (80)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CCeEeeeEEeeC
Confidence            4 3444555543

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.17  E-value=6.9e-10  Score=81.10  Aligned_cols=71  Identities=13%  Similarity=0.259  Sum_probs=56.6

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe--------cCCCCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL--------HATEHYLITT-VESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~--------~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      -+++.+.+|++++|+|.+.+.....+.|++.+..+        ..+.++.... .+...+|+|.+++.+|+|.|+|++..
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            35689999999999999987766678998866443        3455666554 34577899999999999999999965

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.16  E-value=3.7e-10  Score=84.54  Aligned_cols=83  Identities=20%  Similarity=0.349  Sum_probs=59.1

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe--------cCCCCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL--------HATEHYLITT-VESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~--------~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +.++.+.+|++++|.|.+.+.+.+.+.|++.+..+        ....++.... ......|+|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            56788999999999999988777899998633221        1223444321 23457899999999999999999986


Q ss_pred             CCeeeEEEEEEEE
Q psy16852         84 IGGVATCSANLIV   96 (579)
Q Consensus        84 ~~g~~~~~~~~~v   96 (579)
                      .. ....++.|+|
T Consensus        84 ~~-~~~~~~~~~v   95 (95)
T cd05717          84 MP-VQTAKATVTV   95 (95)
T ss_pred             CC-CceEEEEEEC
Confidence            54 2344455543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00409 IG Immunoglobulin

Probab=99.15  E-value=1.1e-09  Score=80.79  Aligned_cols=84  Identities=37%  Similarity=0.602  Sum_probs=68.9

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEEC-CEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKD-GTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS   91 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~   91 (579)
                      |..+.+.+|++++|.|.+.+.+.+.+.|+++ +..+....++..........|.|.+++.+|+|.|+|.+.+..+.....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00409        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            4567889999999999998887789999998 888875666666655556899999999999999999999877766665


Q ss_pred             EEEEE
Q psy16852         92 ANLIV   96 (579)
Q Consensus        92 ~~~~v   96 (579)
                      +.+.|
T Consensus        81 ~~l~V   85 (86)
T smart00409       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            55554

>smart00410 IG_like Immunoglobulin like

Probab=99.15  E-value=1.1e-09  Score=80.79  Aligned_cols=84  Identities=37%  Similarity=0.602  Sum_probs=68.9

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEEC-CEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKD-GTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS   91 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~   91 (579)
                      |..+.+.+|++++|.|.+.+.+.+.+.|+++ +..+....++..........|.|.+++.+|+|.|+|.+.+..+.....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00410        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            4567889999999999998887789999998 888875666666655556899999999999999999999877766665


Q ss_pred             EEEEE
Q psy16852         92 ANLIV   96 (579)
Q Consensus        92 ~~~~v   96 (579)
                      +.+.|
T Consensus        81 ~~l~V   85 (86)
T smart00410       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            55554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.14  E-value=3.5e-10  Score=82.22  Aligned_cols=77  Identities=26%  Similarity=0.321  Sum_probs=57.7

Q ss_pred             CCCEEEEEEEEeeC--CCeeEEEECCEEecCC---CCEEE---EEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852         21 EQPALFTCKVEGHP--LPTMTWQKDGTELHAT---EHYLI---TTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA   92 (579)
Q Consensus        21 G~~~~l~C~~~~~~--~~~v~W~~~g~~~~~~---~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~   92 (579)
                      |++++|.|.+.+.+  ...+.|.+++......   ...+.   ......+.|.|.+++.+|+|.|+|.|.|..|....++
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            89999999998755  3478999887644211   11010   1122357899999999999999999999989888888


Q ss_pred             EEEEE
Q psy16852         93 NLIVL   97 (579)
Q Consensus        93 ~~~v~   97 (579)
                      .|.|+
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88885

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.13  E-value=3.3e-10  Score=83.13  Aligned_cols=79  Identities=19%  Similarity=0.327  Sum_probs=57.5

Q ss_pred             CceeeeCCCCEEEEEEEEeeCCCeeEEEECCE--Ee----cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE-cCCe
Q psy16852         14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT--EL----HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT-NIGG   86 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~--~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~-~~~g   86 (579)
                      ..+.+.+|++++|.|.. +.|.+.+.||+.+.  ..    ....++.  ..  ...|.|.+++.+|+|.|+|.+. +..+
T Consensus         4 ~~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~--~~--~~~L~I~~~~~~DsG~Y~C~a~~~~~~   78 (91)
T cd05871           4 KVVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI--HT--ERGLLLRSLQRSDAGVYTCTAVEHSFS   78 (91)
T ss_pred             eEEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE--Ee--cCeEEEeeCChhHCEEEEEEEEccCCe
Confidence            34678999999999997 47888999998432  21    1122222  22  2569999999999999999998 5666


Q ss_pred             eeEEEEEEEEE
Q psy16852         87 VATCSANLIVL   97 (579)
Q Consensus        87 ~~~~~~~~~v~   97 (579)
                      .....+.|+|.
T Consensus        79 ~~~~~~~l~v~   89 (91)
T cd05871          79 QTLAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEEEe
Confidence            66667777775

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.13  E-value=2.2e-10  Score=82.63  Aligned_cols=64  Identities=17%  Similarity=0.201  Sum_probs=50.5

Q ss_pred             eeecCCCeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852        418 IAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN  496 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~  496 (579)
                      .+.+|++++|.|.+.+ .+.+.+.|+|+|..+....                                           .
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------------------------------------~   46 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------------------------------------S   46 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------------------------------------C
Confidence            5789999999999853 5667899999987653210                                           1


Q ss_pred             eeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852        497 RSVLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                      .+.|.|.+++.+|+|.|+|.|.|..|+.
T Consensus        47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753          47 NSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             CceEEECccCHHHCEEEEEEEEeCCcee
Confidence            2348999999999999999999998853

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.12  E-value=5.2e-10  Score=81.32  Aligned_cols=83  Identities=13%  Similarity=0.098  Sum_probs=58.1

Q ss_pred             CCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeE
Q psy16852        422 QSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV  499 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~  499 (579)
                      |++++|.|.+.+.+.+  .+.|.+.+..+.......      .         ....              ........++
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~------~---------~~~~--------------~~~~~~~~s~   51 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVS------E---------NRRS--------------LQEHTELSST   51 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecc------c---------cccc--------------ccccceeeeE
Confidence            7899999999876644  889988776432110000      0         0000              0001234577


Q ss_pred             EEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        500 LLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       500 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      |.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus        52 L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~   85 (86)
T cd05862          52 LTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH   85 (86)
T ss_pred             EEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence            9999999999999999999999999999999875

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.12  E-value=4.4e-10  Score=82.27  Aligned_cols=86  Identities=13%  Similarity=0.213  Sum_probs=56.6

Q ss_pred             eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee---e
Q psy16852        418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT---D  494 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~---~  494 (579)
                      .+.+|+.++|.|.+.+.+.+.+.|++++.....+..-.           +.+.....          .+++..+..   .
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~-----------l~~~~~~~----------~~~r~~~~~~~~~   61 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGS-----------FLTKGPSK----------LNDRADSRRNLWD   61 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCE-----------EEEecccc----------cCCCCceecccCC
Confidence            46789999999999999999999998774432221111           11111100          011111111   3


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                      .....|+|.+++.+|+|.|.|.|.|..++.
T Consensus        62 ~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~   91 (94)
T cd07690          62 QGSFPLIIKNLKIEDSDTYICEVEDKKEEV   91 (94)
T ss_pred             CCeEEEEECCCCHHHCEEEEEEECCccceE
Confidence            345679999999999999999999987764

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.11  E-value=2.4e-10  Score=78.57  Aligned_cols=63  Identities=43%  Similarity=0.674  Sum_probs=51.6

Q ss_pred             CCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         20 QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        20 ~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      +|+.++|.|.+.+.+.+.+.|++++..+. . ..  ........|.|.+++.+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~-~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-E-SN--RLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC-C-CC--EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            58999999998888888999999998887 2 11  2233457899999999999999999987653

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.10  E-value=1.2e-09  Score=81.70  Aligned_cols=91  Identities=19%  Similarity=0.267  Sum_probs=58.9

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      +...+.+|++++|.|.+.+.|.+.+.|++.+..+       +.           ..+......++|...        ...
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~-------~~-----------~~~~~~~~~~r~~~~--------~~~   58 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQT-------LY-----------FNDKRALRDNRIQLV--------NFS   58 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcE-------EE-----------eccccccccCcEEEE--------cCC
Confidence            4566889999999999998888999998643211       00           001000111233221        112


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .....|+|.+++.+|+|.|+|.+.+.. ..++++.|+|
T Consensus        59 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~-~~~~~~~~~v   95 (95)
T cd05717          59 ANELSISISNVSLSDEGRYTCSLYTMP-VQTAKATVTV   95 (95)
T ss_pred             CCeeEEEEccCCcccCEEEEEEEecCC-CceEEEEEEC
Confidence            234569999999999999999999875 3466666653

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.07  E-value=1.6e-09  Score=78.66  Aligned_cols=71  Identities=27%  Similarity=0.582  Sum_probs=55.3

Q ss_pred             eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852        417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN  496 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~  496 (579)
                      ..+.+|+.++|.|.+.+.|.+.+.|++++..+....                                            
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--------------------------------------------   44 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--------------------------------------------   44 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--------------------------------------------
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--------------------------------------------
Confidence            458899999999999999999999999887664211                                            


Q ss_pred             eeEEEEeecccccceeEEEEEEeCCe-eEEEEEEEEE
Q psy16852        497 RSVLLISKITRDQIGDVTCRAENVAG-SVTCTATLSL  532 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v  532 (579)
                       ..|.+..+..+|+|.|+|.|.|..+ ..+.++.|.|
T Consensus        45 -~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   45 -NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             -SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence             0166678889999999999999665 4555666654

...

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.07  E-value=6.7e-10  Score=80.67  Aligned_cols=73  Identities=16%  Similarity=0.253  Sum_probs=54.6

Q ss_pred             CCceeeecCCCeEEEEE-EEeeCCCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        414 LKPVIAEAQSPATLKAT-VTGRPTPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~-~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      .....+.+|+.+.|.|. ..|+|.|.|.|++++..... +.|+.+                                   
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~-----------------------------------   54 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSM-----------------------------------   54 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEE-----------------------------------
Confidence            46678999999999997 68999999999987644222 222111                                   


Q ss_pred             eeeCCeeEEEEeecccccce-eEEEEEEeCCeeE
Q psy16852        492 MTDGNRSVLLISKITRDQIG-DVTCRAENVAGSV  524 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~  524 (579)
                        + ..+.|.|.+++.+|+| .|.|.|.|....+
T Consensus        55 --~-~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          55 --G-QNGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             --C-CCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence              1 1245999999999999 8999999986443

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.07  E-value=3.1e-09  Score=77.24  Aligned_cols=83  Identities=19%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             ceeeeCCCCEEEEEEEEeeCCCe-eEEEECCEEecCCCCEEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852         15 PVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~~~~~-v~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      .+.|.+|+.+.|.|.+.++|.|. +.|.+++..+............     ..+.|+|..++.+|+|.|+|.|.|.....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            47899999999999999999997 9999998876543331222221     24789999999999999999999988888


Q ss_pred             EEEEEEEEE
Q psy16852         89 TCSANLIVL   97 (579)
Q Consensus        89 ~~~~~~~v~   97 (579)
                      +.+..|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            777777663

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.06  E-value=1.7e-09  Score=79.39  Aligned_cols=83  Identities=18%  Similarity=0.243  Sum_probs=56.9

Q ss_pred             eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852        417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN  496 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~  496 (579)
                      +.+.+|+.+.|.|.. +.|.|.+.|++.+.......  .                +  .+.+.|.           .  .
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~--~----------------~--~~~~r~~-----------~--~   51 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKE--E----------------V--KTEERLI-----------H--T   51 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccc--c----------------c--cccccEE-----------E--e
Confidence            457789999999997 48889999998432111000  0                0  0011110           0  1


Q ss_pred             eeEEEEeecccccceeEEEEEE-eCCeeEEEEEEEEEe
Q psy16852        497 RSVLLISKITRDQIGDVTCRAE-NVAGSVTCTATLSLL  533 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~v~  533 (579)
                      .+.|.|.+++.+|+|.|+|.|. |..|.....++|.|.
T Consensus        52 ~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~   89 (91)
T cd05871          52 ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI   89 (91)
T ss_pred             cCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence            1339999999999999999998 678888888888875

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.05  E-value=4.8e-10  Score=77.01  Aligned_cols=61  Identities=38%  Similarity=0.559  Sum_probs=46.4

Q ss_pred             CCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCEEEEEeCCE--EEEEEcCCCCCCCEEEEEEE
Q psy16852         21 EQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESV--STLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus        21 G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      |+.++|+|.+ .+.+...+.|++++.................  ..|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            8999999999 6667779999999886654433333322221  13999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>smart00409 IG Immunoglobulin

Probab=99.04  E-value=6.6e-09  Score=76.56  Aligned_cols=82  Identities=30%  Similarity=0.561  Sum_probs=63.6

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeC-CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRG-KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....++.+..                                   .
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~-----------------------------------~   47 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR-----------------------------------S   47 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE-----------------------------------c
Confidence            34577899999999999888889999998 77765444333322                                   1


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .....|.|.++..+|+|.|+|.+.+..+.....+.|.|
T Consensus        48 ~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409       48 GSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             CCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            12456999999999999999999999888777777765

>smart00410 IG_like Immunoglobulin like

Probab=99.04  E-value=6.6e-09  Score=76.56  Aligned_cols=82  Identities=30%  Similarity=0.561  Sum_probs=63.6

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeC-CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRG-KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....++.+..                                   .
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~-----------------------------------~   47 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR-----------------------------------S   47 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE-----------------------------------c
Confidence            34577899999999999888889999998 77765444333322                                   1


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .....|.|.++..+|+|.|+|.+.+..+.....+.|.|
T Consensus        48 ~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410       48 GSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             CCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            12456999999999999999999999888777777765

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.03  E-value=4.4e-10  Score=81.62  Aligned_cols=77  Identities=17%  Similarity=0.318  Sum_probs=59.9

Q ss_pred             Cccccc-cCceeeeCCCCEEEEEE-EEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCE-EEEEEEEc
Q psy16852          7 PRFIEK-IQPVVSHQEQPALFTCK-VEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIG-VYTCKATN   83 (579)
Q Consensus         7 p~~~~~-p~~~~v~~G~~~~l~C~-~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~   83 (579)
                      |.|... +..+.|.+|+.+.|.|. ..|.|.|.|.|++++...... ..++. ...++.|.|.+++.+|+| .|.|.|.+
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~-~~~~GnL~fs~v~~~D~g~~Y~C~a~~   80 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVS-MGQNGNLYFANVEEQDSHPDYICHAHF   80 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEE-ECCCceEEEEEEehhhCCCCeEEEEEc
Confidence            445554 57799999999999998 588999999999877654332 22333 333489999999999999 89999987


Q ss_pred             CC
Q psy16852         84 IG   85 (579)
Q Consensus        84 ~~   85 (579)
                      ..
T Consensus        81 ~~   82 (95)
T cd05845          81 PG   82 (95)
T ss_pred             cc
Confidence            64

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PHA03376 BARF1; Provisional

Probab=99.03  E-value=3e-09  Score=84.51  Aligned_cols=125  Identities=18%  Similarity=0.189  Sum_probs=77.9

Q ss_pred             CceeeeCCCCEEEEEEEEee---CCCeeEEEECCE----Ee---------cCC----CCEEEEEeCCEEEEEEcCCCCCC
Q psy16852         14 QPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGT----EL---------HAT----EHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~~---~~~~v~W~~~g~----~~---------~~~----~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      .++.+..|+.++|+|.....   +.-.|.|+|.+.    .+         -..    .++.+....++.+|.|.+++.+|
T Consensus        19 ~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSD   98 (221)
T PHA03376         19 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   98 (221)
T ss_pred             cchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecC
Confidence            46888999999999997522   233799999432    11         011    11222223578899999999999


Q ss_pred             CEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE
Q psy16852         74 IGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE  144 (579)
Q Consensus        74 ~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~  144 (579)
                      .|.|+|.+..........-.+++..      |..+...........-+...+.|...|+|.|.+.|.-+.+
T Consensus        99 dGtY~C~fQkge~~~~k~ehLt~V~------~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376         99 DGNYLCRMKLGETEVTKQEHLSVVK------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             CceEEEEEEcCCCceeeeeeeeeee------cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            9999999986543333333333321      1011111100011125567999998899999999998654

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.03  E-value=1.6e-09  Score=78.93  Aligned_cols=80  Identities=15%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             CceeeeCCCCEEEEEEE------Eee-----CCCeeEEEECCEEecCCCC-----EEEEEeCCEEEEEEcCCCCCCCEEE
Q psy16852         14 QPVVSHQEQPALFTCKV------EGH-----PLPTMTWQKDGTELHATEH-----YLITTVESVSTLEIINPTKEDIGVY   77 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~------~~~-----~~~~v~W~~~g~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y   77 (579)
                      ....+.+||++.|.|..      .++     ....+.|||++..+.....     .++..  ....|.|.++..+|+|.|
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~--~~~~Lwf~Pa~~eDSG~Y   85 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK--EEDSIWFRPAELQDSGLY   85 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE--eCCEEEEEeCChhhCeEE
Confidence            44778999999999986      111     1237999999755543321     23332  336899999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEE
Q psy16852         78 TCKATNIGGVATCSANLI   95 (579)
Q Consensus        78 ~C~~~~~~g~~~~~~~~~   95 (579)
                      +|++.|.......++.++
T Consensus        86 ~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          86 TCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EEEECCCCcceEEEEEEE
Confidence            999998776555555544

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.01  E-value=2e-09  Score=73.90  Aligned_cols=63  Identities=29%  Similarity=0.560  Sum_probs=48.8

Q ss_pred             cCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852        421 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL  500 (579)
Q Consensus       421 ~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l  500 (579)
                      +|+.++|.|.+.+.|.+.+.|++++..+..  ....                                     ......|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~-------------------------------------~~~~~~L   41 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRL-------------------------------------SASGSTL   41 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEE-------------------------------------ecCCcEE
Confidence            488999999998899999999998887751  1111                                     1123458


Q ss_pred             EEeecccccceeEEEEEEeCCe
Q psy16852        501 LISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       501 ~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      .|.+++.+|+|.|+|.|.|..|
T Consensus        42 ~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       42 TIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             EEeeCCcccCEEEEEEEecCCC
Confidence            8899999999999999998765

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.98  E-value=2e-09  Score=78.61  Aligned_cols=74  Identities=16%  Similarity=0.266  Sum_probs=53.5

Q ss_pred             eeeecCCCeEEEEE-EEe----eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        417 VIAEAQSPATLKAT-VTG----RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       417 ~~~~~g~~~~l~C~-~~g----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      +.+..|....|.|. ..+    .+.|+++|+|++.++....+....+                                 
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~---------------------------------   51 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL---------------------------------   51 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec---------------------------------
Confidence            45667899999997 233    3667999999999886544322111                                 


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEeCCeeEEE
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC  526 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  526 (579)
                         ...+.|.|.++..+|+|.|+|.|.|.+|....
T Consensus        52 ---~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y   83 (95)
T cd05897          52 ---KGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY   83 (95)
T ss_pred             ---CCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence               01223999999999999999999999876543

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.98  E-value=1.7e-09  Score=79.85  Aligned_cols=74  Identities=14%  Similarity=0.217  Sum_probs=57.2

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      +|.|...|.. .|.+|++|+|+|... .+...+.|+++|.......   .........|.|.+++.+|+|.|+|++.+.
T Consensus         2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            5777777764 689999999999885 4566899999998644221   112234578999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.97  E-value=7.9e-09  Score=72.37  Aligned_cols=68  Identities=16%  Similarity=0.275  Sum_probs=50.8

Q ss_pred             CeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEE
Q psy16852        424 PATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI  502 (579)
Q Consensus       424 ~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i  502 (579)
                      .++|+|... |.|++++.||+++.+|.....                   ...+.+.|+              ..++|.|
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-------------------~~~~~~~~t--------------~~s~L~~   47 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS-------------------QQENGKTVS--------------VSNTIRF   47 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcc-------------------cccCCceEE--------------EEEEEEE
Confidence            368999985 689999999999999954211                   112222332              3456999


Q ss_pred             eecccccceeEEEEEEeCCeeE
Q psy16852        503 SKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       503 ~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                      .....+|.+.|+|+|.|..+..
T Consensus        48 ~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885          48 PVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EeeeccCCcEEEEEEEChhhCC
Confidence            9999999999999999998853

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.97  E-value=2.1e-09  Score=78.48  Aligned_cols=72  Identities=21%  Similarity=0.355  Sum_probs=53.8

Q ss_pred             ceeeeCCCCEEEEEEE-E----eeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852         15 PVVSHQEQPALFTCKV-E----GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~-~----~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      +..+.+|.+..|+|.- .    ..+.+.++||||+.++........ ...+...|.|.++..+|+|.|+|.+.+..|.
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFY-SLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceE-ecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            3567899999999973 2    235668999999999875443222 2122357999999999999999999987643

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.95  E-value=5.4e-09  Score=74.39  Aligned_cols=65  Identities=23%  Similarity=0.457  Sum_probs=53.0

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      ...+.|.+|+++.|.|...+. .+.+.|+++|..+..+.++....    ..|.|.+++.+|+|.|.|.+.
T Consensus         3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~----~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           3 VKNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGT----DGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             ceEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeC----CCCEEEECCHhhCEEEEEEEe
Confidence            356789999999999999765 55999999999987655443332    348899999999999999986

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.91  E-value=9.5e-09  Score=79.45  Aligned_cols=76  Identities=16%  Similarity=0.291  Sum_probs=57.3

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEE------e--------cCCCCEEEEEe--CCEEEEEEcCCCCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTE------L--------HATEHYLITTV--ESVSTLEIINPTKED   73 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~------~--------~~~~~~~~~~~--~~~~~L~i~~~~~~d   73 (579)
                      ...|..+.+.+|++|+|.|.+.+.+...+.|||....      +        ....++.+...  .....|+|.+++.+|
T Consensus         2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   81 (109)
T cd04983           2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD   81 (109)
T ss_pred             eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence            3567889999999999999998766778999985321      0        12234444332  357899999999999


Q ss_pred             CEEEEEEEEcCC
Q psy16852         74 IGVYTCKATNIG   85 (579)
Q Consensus        74 ~G~Y~C~~~~~~   85 (579)
                      +|.|+|.+.+..
T Consensus        82 sG~Y~C~~~~~~   93 (109)
T cd04983          82 SAVYFCALSESG   93 (109)
T ss_pred             CEEEEEEEecCC
Confidence            999999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.89  E-value=6.5e-09  Score=72.79  Aligned_cols=66  Identities=24%  Similarity=0.365  Sum_probs=48.8

Q ss_pred             CEEEEEEEE-eeCCCeeEEEECCEEecCCCCEE--EEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852         23 PALFTCKVE-GHPLPTMTWQKDGTELHATEHYL--ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus        23 ~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      .++|+|... +.|++.|+||++|+++.......  -......++|+|.....+|++.|+|+|.|..+..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            378999985 57888999999999996532100  0000123679999999999999999999987643

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.88  E-value=8.6e-09  Score=79.53  Aligned_cols=74  Identities=18%  Similarity=0.327  Sum_probs=55.3

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE--E---e----------c---CCCCEEEEEeC-CEEEEEEcCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT--E---L----------H---ATEHYLITTVE-SVSTLEIINPT   70 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~--~---~----------~---~~~~~~~~~~~-~~~~L~i~~~~   70 (579)
                      ...|..+.+.+|++++|.|.+.+ +...+.|||...  .   |          .   ...++...... ...+|.|.+++
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~   80 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE   80 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence            45688899999999999999987 667899999532  1   0          0   12334333322 46789999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy16852         71 KEDIGVYTCKATNI   84 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~   84 (579)
                      .+|+|.|+|.+.+.
T Consensus        81 ~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          81 PEDSAVYLCASSLG   94 (110)
T ss_pred             hhhCEEEEEEeeCC
Confidence            99999999999764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.87  E-value=1.6e-08  Score=71.93  Aligned_cols=77  Identities=18%  Similarity=0.276  Sum_probs=56.6

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      .+.++..|+.+.|.|...+ +.+.+.|+++|..+..+.++....                                   +
T Consensus         4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~-----------------------------------~   47 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGT-----------------------------------D   47 (85)
T ss_pred             eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeC-----------------------------------C
Confidence            4567889999999999984 466999999999987654443311                                   1


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCe--eEEEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAG--SVTCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v  532 (579)
                      |    |.|..++.+|+|.|.|.+. +.|  ..-....|.|
T Consensus        48 G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~l~v   82 (85)
T cd05872          48 G----LLILVTSPEHSGTYRCYSE-EEGFQQLVASYSLNV   82 (85)
T ss_pred             C----CEEEECCHhhCEEEEEEEe-cCCCeEEEEEEEEEE
Confidence            1    8899999999999999986 334  3444445554

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA03376 BARF1; Provisional

Probab=98.85  E-value=3.9e-08  Score=78.33  Aligned_cols=125  Identities=14%  Similarity=0.172  Sum_probs=78.0

Q ss_pred             ceEEccCCcEEEEEEEE---eecCCeEEEEECCE----Ec-cC----------CCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852        114 PVIAEAQSPATLKATVT---GRPTPSICWYRGKE----EI-LP----------DNGHTMEFNPTTGECVLSISEATPQDE  175 (579)
Q Consensus       114 ~~~~~~g~~~~l~C~~~---~~p~~~i~W~~~~~----~~-~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (579)
                      ++....|+.+.|+|...   ..+...|.|+|.+.    -+ ..          ..+....+-...++.+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            56677899999999864   22446999999421    11 10          112222222234778999999999999


Q ss_pred             eEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECC
Q psy16852        176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNG  249 (579)
Q Consensus       176 G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~  249 (579)
                      |.|+|.+............+++.           .|-.+...........-+..++.|.+.|+|.|.++|..+.
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V-----------~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~  162 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVV-----------KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE  162 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeee-----------ecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence            99999998765544443333332           1111111111111222466799999878999999998754

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.85  E-value=2.1e-08  Score=72.65  Aligned_cols=66  Identities=27%  Similarity=0.454  Sum_probs=47.5

Q ss_pred             CEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852         23 PALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus        23 ~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      ++.|+|.+.| .|.+.++|+++|+.+............     ..+.|.|.....+|.|.|+|.|.|.....
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            4789999987 577899999999988643221111111     13578888888889999999999876433

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.85  E-value=1.5e-08  Score=77.55  Aligned_cols=75  Identities=17%  Similarity=0.257  Sum_probs=55.3

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEECC--E---Eec---------CCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKDG--T---ELH---------ATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      +...|..+.+.+|++|+|+|.+.+.. ...+.|||..  .   .+.         ...++..........|+|.+++.+|
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   82 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED   82 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence            45668889999999999999986554 4579999842  1   111         1134444444456789999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|.+.+
T Consensus        83 sg~Y~Ca~~~   92 (106)
T cd04980          83 AAVYYCQQYG   92 (106)
T ss_pred             CEEEEEEEeC
Confidence            9999999864

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.84  E-value=4.4e-09  Score=75.14  Aligned_cols=74  Identities=35%  Similarity=0.554  Sum_probs=53.6

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      ||.+...+.......+. ++|+|.+.+.+ .+.++|+ +.....  .............|.|.++..+|.|.|+|.|.|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~--~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSF--NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEE--EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCce--eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            57888888887676666 99999998877 7799999 111111  111112223457899999999999999999976

...

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.83  E-value=4.3e-08  Score=70.97  Aligned_cols=78  Identities=24%  Similarity=0.318  Sum_probs=51.6

Q ss_pred             CeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEE
Q psy16852        424 PATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI  502 (579)
Q Consensus       424 ~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i  502 (579)
                      .++|+|.+.| .|.+.+.|+++|..+..........                .+++.|              ...+.|.+
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~----------------~~~~~~--------------~~~s~L~i   50 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELL----------------KDGKRE--------------TTVSTLPI   50 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEe----------------cCCCeE--------------EEEEEEEE
Confidence            3689999987 6888999999999885321111000                011111              12355888


Q ss_pred             eecccccceeEEEEEEeCCeeEEEEEEEE
Q psy16852        503 SKITRDQIGDVTCRAENVAGSVTCTATLS  531 (579)
Q Consensus       503 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  531 (579)
                      .....+|.|.|+|.|.|..........++
T Consensus        51 ~~~~~~~~~~y~C~a~n~~l~~~~~~s~~   79 (82)
T cd05759          51 TPSDHDTGRTFTCRARNEALPTGKETSVT   79 (82)
T ss_pred             eCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence            88888999999999999876544444443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.81  E-value=2.2e-08  Score=75.11  Aligned_cols=84  Identities=20%  Similarity=0.195  Sum_probs=55.1

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE-----Ee---cCC---------CCEEEEEeCCEEEEEEcCCCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT-----EL---HAT---------EHYLITTVESVSTLEIINPTKE   72 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~-----~~---~~~---------~~~~~~~~~~~~~L~i~~~~~~   72 (579)
                      +.+|-+..+.+|+++.|.|.........+.|||...     .+   ...         ...+. ....+++|.|.+++.+
T Consensus         2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~-~~~~ngSL~I~~v~~~   80 (105)
T cd05774           2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRE-TIYPNGSLLIQNVTQK   80 (105)
T ss_pred             eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcE-EEeCCCcEEEecCCcc
Confidence            345667779999999999976444444899999521     11   010         01111 1123468999999999


Q ss_pred             CCEEEEEEEEcCCe-eeEEEEEE
Q psy16852         73 DIGVYTCKATNIGG-VATCSANL   94 (579)
Q Consensus        73 d~G~Y~C~~~~~~g-~~~~~~~~   94 (579)
                      |+|.|+|.+.+... .....+.+
T Consensus        81 D~G~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          81 DTGFYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             cCEEEEEEEEeCCccEEEEEEEE
Confidence            99999999988763 33333333

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.81  E-value=1.4e-08  Score=75.20  Aligned_cols=76  Identities=13%  Similarity=0.164  Sum_probs=52.9

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +|.|...|. ..|.+|++|+|.|.... ....+.|||+|...................|.|.+++.+|+|.|+|....
T Consensus         1 kP~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           1 KPFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            466666554 45889999999998864 44579999988753211000000122346899999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.80  E-value=3.7e-08  Score=76.97  Aligned_cols=74  Identities=24%  Similarity=0.407  Sum_probs=56.3

Q ss_pred             ccccCceeeeCCCCEEEEEEEEe--eCCCeeEEEEC--CEE---e---c-----------CCCCEEEEEeC--CEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEG--HPLPTMTWQKD--GTE---L---H-----------ATEHYLITTVE--SVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~--~~~~~v~W~~~--g~~---~---~-----------~~~~~~~~~~~--~~~~L~i   66 (579)
                      ...|..+.+.+|++++|.|.+.+  .+...+.|||.  |..   +   .           ...++......  ....|+|
T Consensus         2 ~Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   81 (116)
T cd04982           2 EQPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI   81 (116)
T ss_pred             CCcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence            35678899999999999999976  56678999994  211   0   0           12455555454  5789999


Q ss_pred             cCCCCCCCEEEEEEEEc
Q psy16852         67 INPTKEDIGVYTCKATN   83 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~   83 (579)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          82 QNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EECCHHHCEEEEEEEec
Confidence            99999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>TIGR00864 PCC polycystin cation channel protein

Probab=98.80  E-value=0.00053  Score=78.06  Aligned_cols=388  Identities=14%  Similarity=0.097  Sum_probs=206.9

Q ss_pred             CCCCEEEEEE--EEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEcc-
Q psy16852         71 KEDIGVYTCK--ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL-  147 (579)
Q Consensus        71 ~~d~G~Y~C~--~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~-  147 (579)
                      -.+.|.|.-.  +.|..|....+.++.|.++     ...+........+..|+.+.|.-...+.....+.|...++.-. 
T Consensus      1666 ~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~ep-----i~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~ 1740 (2740)
T TIGR00864      1666 PLEAGPCDIFLQAANLLGQATADCTIDFLEP-----AGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLE 1740 (2740)
T ss_pred             cCCCceEEEEEEEeecccceeeEEEEEEEEE-----cCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcc
Confidence            3678988775  4588888888778888763     1223333344455679999999877777788999998764211 


Q ss_pred             -CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEE--EEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCC--cee
Q psy16852        148 -PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK--AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ--ALL  222 (579)
Q Consensus       148 -~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~--~~~  222 (579)
                       .......                .....|.|...  |.|..+....+..+.|....        ....+.....  ...
T Consensus      1741 ~s~p~~tH----------------tf~~~G~y~VtVta~N~vss~~~s~~V~VqepV--------~GL~i~~~~~~~~~~ 1796 (2740)
T TIGR00864      1741 TSEPFMSH----------------SFPSAGLHLVTMKAFNELGSANASEEVDVQEPI--------SGLKIRAADAGEQNF 1796 (2740)
T ss_pred             cCCCceEE----------------EccCCceEEEEEEEEccccccceeEEEEEEecc--------ccceEecCCCCcccc
Confidence             1111111                12356777654  57887777666555554322        1112221111  113


Q ss_pred             eCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEE--EEcCCeeeEEEEEEEEEe
Q psy16852        223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIR--VVNEAGEARTSGSVTITV  300 (579)
Q Consensus       223 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~--a~n~~g~~~~~~~~~v~~  300 (579)
                      +..|..+.+.-.+.......+.|..++..-..      ..  ..   ..+..++|.|+-.  |.|..+....+..+.|..
T Consensus      1797 ~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~------gk--~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe 1865 (2740)
T TIGR00864      1797 FAADSSVCFQGELATGTNVSWCWAIDGGSSKM------GK--HA---CMTFPDAGTFAIRLNASNAVSGKSASREFFAEE 1865 (2740)
T ss_pred             eecCcEEEEEEEccCCCeeEEEEEeCCCCccc------cc--ee---EEecCCCeEEEEEEEEEcccCcceeeeeEEEEE
Confidence            45677777766654334447778776532111      11  11   1345688998765  468887777776666652


Q ss_pred             ccceeeeeeeeeec-cccCceeeeecCeeEEEeeeCCCeEEEEECCE-Ecc--CCCeEEEEECCCCeEEEEEcccCCCCC
Q psy16852        301 AEAETVMMDVRVES-HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT-PMK--EGKEVTIYQDTDGLCKLAISEVFPENA  376 (579)
Q Consensus       301 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~-~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~  376 (579)
                      ... .+.|.+.... .....+     ...+.....+...+.|..++. +..  .+..+.             +....-..
T Consensus      1866 ~I~-~L~L~as~~~~~~n~~v-----~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~-------------HsY~~~G~ 1926 (2740)
T TIGR00864      1866 PIF-GLELKASKKIAAIGEKV-----EFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFS-------------HSFPRVDD 1926 (2740)
T ss_pred             ecc-eEEEecccccccCCCEE-----EEEEEecCCCceEEEEEeCCCCceeecCCCeEE-------------eecCCCCc
Confidence            221 1222222110 011111     111223333456677766532 211  111111             11222333


Q ss_pred             EEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCce-eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCee
Q psy16852        377 GLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPV-IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT  455 (579)
Q Consensus       377 G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~-~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~  455 (579)
                      ...+..|.|..+.......+.|...     ...+....... .+..|+..++.-.+...-+..+.|+++-..+..+....
T Consensus      1927 Y~VtV~A~N~Vs~~~a~~~V~Vle~-----V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~ 2001 (2740)
T TIGR00864      1927 HMVNLRAKNEVSCAQANLHIEVLEA-----VRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVI 2001 (2740)
T ss_pred             EEEEEEEEeccceeeeeEEEEEEEe-----ccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCccee
Confidence            4445567888888877777777653     12222222111 25778999999988755555899998644443332211


Q ss_pred             EEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEE--EEEeCCeeEEEEEEEEEe
Q psy16852        456 MEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTC--RAENVAGSVTCTATLSLL  533 (579)
Q Consensus       456 ~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~v~  533 (579)
                      .    .+..                                 -+.+     ....|.|.-  .|.|.+|....+..++|+
T Consensus      2002 ~----~G~~---------------------------------vty~-----~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ 2039 (2740)
T TIGR00864      2002 H----MGKD---------------------------------VSYT-----AEAAGLLEIQLGAFNALGAENITLQLEAQ 2039 (2740)
T ss_pred             e----cCCc---------------------------------eEEc-----cCCCcEEEEEEEEEcccCcccccEEEEEE
Confidence            1    0000                                 0011     123566654  688999988888888877


Q ss_pred             eCCcccccccCCccccCCCceEEecCCcEEEEEEeccce
Q psy16852        534 PESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSE  572 (579)
Q Consensus       534 ~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~  572 (579)
                      .+....        .....+.....|..+.|.|.+...+
T Consensus      2040 ~~i~~~--------~L~~~p~~~~~n~~v~f~~~~~~~~ 2070 (2740)
T TIGR00864      2040 DALMDA--------ALQAGPQDCFTNKMAQFEAATSPKP 2070 (2740)
T ss_pred             eheeeE--------EEeecCcceecCceEEEEEEEccCC
Confidence            432211        1111223345688899999885533

Note: this model has been restricted to the amino half because for technical reasons.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.80  E-value=8.2e-08  Score=73.54  Aligned_cols=79  Identities=18%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             CCCCEEEEEEEEeeC------CCeeEEEECC-----E-Ee--cCC--------CCEEEEE---eCCEEEEEEcCCCCCCC
Q psy16852         20 QEQPALFTCKVEGHP------LPTMTWQKDG-----T-EL--HAT--------EHYLITT---VESVSTLEIINPTKEDI   74 (579)
Q Consensus        20 ~G~~~~l~C~~~~~~------~~~v~W~~~g-----~-~~--~~~--------~~~~~~~---~~~~~~L~i~~~~~~d~   74 (579)
                      .|++|+|.|.+...+      ...|.|++..     . .+  ..+        .+.++..   ..+..+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987643      3589999962     1 11  011        1112222   23568999999999999


Q ss_pred             EEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852         75 GVYTCKATNIGGVATCSANLIVLE   98 (579)
Q Consensus        75 G~Y~C~~~~~~g~~~~~~~~~v~~   98 (579)
                      |.|+|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998777777777777753

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.79  E-value=6.5e-08  Score=73.54  Aligned_cols=78  Identities=21%  Similarity=0.255  Sum_probs=52.9

Q ss_pred             CCCCEEEEEEEEeeC------------CCeeEEEEC--CEE---e---------cCCCCEEEEE-----eCCEEEEEEcC
Q psy16852         20 QEQPALFTCKVEGHP------------LPTMTWQKD--GTE---L---------HATEHYLITT-----VESVSTLEIIN   68 (579)
Q Consensus        20 ~G~~~~l~C~~~~~~------------~~~v~W~~~--g~~---~---------~~~~~~~~~~-----~~~~~~L~i~~   68 (579)
                      .|++|+|.|......            .+.|.|+|-  |..   +         ....+.++..     ..+..+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999986432            358999983  211   1         1111113333     23578999999


Q ss_pred             CCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         69 PTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      ++.+|+|.|+|.+.+........+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999998765555555666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.79  E-value=1e-08  Score=70.36  Aligned_cols=63  Identities=24%  Similarity=0.462  Sum_probs=45.3

Q ss_pred             CCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEE
Q psy16852        120 QSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  182 (579)
Q Consensus       120 g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  182 (579)
                      |+.++|.|.+ .+.+...+.|++++.....................|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 66677899999998755433222222221111124999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.77  E-value=5.3e-08  Score=71.12  Aligned_cols=85  Identities=14%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             ceeeecCCCeEEEEEEE------e-----eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        416 PVIAEAQSPATLKATVT------G-----RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~------g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      ...+.+|+++.|.|..-      +     .....+.|+|++..+........     .+.                    
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~-----~~~--------------------   63 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIF-----DGV--------------------   63 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccc-----cce--------------------
Confidence            35688999999999861      1     12337999999755543321000     000                    


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                             +.......|.|.++..+|+|.|+|++.|.......++.|+|
T Consensus        64 -------Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          64 -------RMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             -------eEEEeCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence                   00112334999999999999999999999888888877764

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.76  E-value=2.3e-07  Score=67.91  Aligned_cols=72  Identities=18%  Similarity=0.196  Sum_probs=54.4

Q ss_pred             CceEEccCCcEEEEEEEEeecCCeEEEEECCEEc--------cCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        113 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI--------LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      .++.+.+|++++|+|.+.+.....+.|++.+..+        ..+.++... ...+...+|.|.+++.+|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~-~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLV-NFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEE-eCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            5678889999999999987766778888766432        233344433 2235577899999999999999999975


Q ss_pred             C
Q psy16852        185 T  185 (579)
Q Consensus       185 ~  185 (579)
                      .
T Consensus        84 ~   84 (95)
T cd05881          84 D   84 (95)
T ss_pred             c
Confidence            3

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.75  E-value=9.4e-08  Score=73.31  Aligned_cols=75  Identities=19%  Similarity=0.212  Sum_probs=53.1

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeC----CCeeEE---------------EECCEEecC-CCC--EEEEEe----CCEEEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHP----LPTMTW---------------QKDGTELHA-TEH--YLITTV----ESVSTLE   65 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~----~~~v~W---------------~~~g~~~~~-~~~--~~~~~~----~~~~~L~   65 (579)
                      .+..+.+..|+.++|.|......    ...+.|               |++|..... ...  -++...    .+..+|.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            46678899999999999996532    248999               334444321 111  122222    3568999


Q ss_pred             EcCCCCCCCEEEEEEEEcCCe
Q psy16852         66 IINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      |.+++.+|.|.|+|.+.|..+
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCC
Confidence            999999999999999998654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.74  E-value=1.7e-07  Score=71.85  Aligned_cols=40  Identities=18%  Similarity=0.257  Sum_probs=35.9

Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ......|+|.+++.+|+|.|.|.+.+..+.....++|+|.
T Consensus        64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          64 DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence            4466789999999999999999999998888899999886

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.74  E-value=9.4e-08  Score=72.17  Aligned_cols=75  Identities=20%  Similarity=0.282  Sum_probs=52.7

Q ss_pred             CCEEEEEEEEeeC---CCeeEEEECCEE---------------ecCCCCEEEEEeC---CEEEEEEcCCCCCCCEEEEEE
Q psy16852         22 QPALFTCKVEGHP---LPTMTWQKDGTE---------------LHATEHYLITTVE---SVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus        22 ~~~~l~C~~~~~~---~~~v~W~~~g~~---------------~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      ++|+|.|.+...+   ...|.|+|....               +......++....   ...+|+|.+++.+|+|.|+|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5799999997644   337999995421               1111123333332   467999999999999999999


Q ss_pred             EEc-CCeeeEEEEEEEE
Q psy16852         81 ATN-IGGVATCSANLIV   96 (579)
Q Consensus        81 ~~~-~~g~~~~~~~~~v   96 (579)
                      +.. ..|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            874 5677777777776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.73  E-value=1.3e-07  Score=73.08  Aligned_cols=90  Identities=13%  Similarity=0.185  Sum_probs=55.4

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +....+.+|++++|.|.+.+.+...+.|++....  ......+... .         .......+++....       ..
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~--~~~~~l~~~~-~---------~~~~~~~~r~~~~~-------~~   65 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPG--QGPQFLIYIS-S---------NGEEKEKGRFSATL-------DK   65 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCC--CCeEEEEEEe-c---------CCCcccCCcEEEEE-------cc
Confidence            4556789999999999998777789999995321  0111111110 0         00011222332111       11


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      +.....|.|.+++.+|+|.|.|.+.+..+
T Consensus        66 ~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~   94 (109)
T cd04983          66 SRKSSSLHISAAQLSDSAVYFCALSESGG   94 (109)
T ss_pred             cCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            23567799999999999999999987643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.73  E-value=1.8e-07  Score=71.74  Aligned_cols=78  Identities=17%  Similarity=0.212  Sum_probs=54.6

Q ss_pred             CCCCEEEEEEEEeeC------CCeeEEEECCE----E----ecCC------C--CEEEEEe---CCEEEEEEcCCCCCCC
Q psy16852         20 QEQPALFTCKVEGHP------LPTMTWQKDGT----E----LHAT------E--HYLITTV---ESVSTLEIINPTKEDI   74 (579)
Q Consensus        20 ~G~~~~l~C~~~~~~------~~~v~W~~~g~----~----~~~~------~--~~~~~~~---~~~~~L~i~~~~~~d~   74 (579)
                      .|++|+|.|.+...|      ...|.|||...    .    +...      .  ..+....   .+..+|+|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            589999999987553      24699999531    1    1100      0  1122221   2357899999999999


Q ss_pred             EEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         75 GVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        75 G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      |.|+|.+.+..+.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999888877777777775

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.72  E-value=3.5e-08  Score=70.40  Aligned_cols=73  Identities=34%  Similarity=0.602  Sum_probs=48.0

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      |.+...+.......+. ++|.|.+.+.| .+.++|+ +......                                    
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~------------------------------------   43 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN------------------------------------   43 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE------------------------------------
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee------------------------------------
Confidence            4555444444444344 99999999887 7799999 1111000                                    


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                       ..........+.|.|.++..+|.|.|+|.|+|
T Consensus        44 -~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   44 -SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             -EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             -eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence             00122244566799999999999999999987

...

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.72  E-value=1.1e-07  Score=73.53  Aligned_cols=75  Identities=19%  Similarity=0.347  Sum_probs=51.5

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeC----CCeeEEEEC----CEE--e---c------CCCCE--EEEE----eCCEEEEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHP----LPTMTWQKD----GTE--L---H------ATEHY--LITT----VESVSTLEI   66 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~----~~~v~W~~~----g~~--~---~------~~~~~--~~~~----~~~~~~L~i   66 (579)
                      .|+.+.+.+|++++|.|.....+    ...+.||+.    +..  +   .      ...++  ++..    .....+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            47789999999999999986433    236999852    211  1   0      11122  2221    124678999


Q ss_pred             cCCCCCCCEEEEEEEEcCCe
Q psy16852         67 INPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      .+++.+|+|.|+|.+.+..+
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCC
Confidence            99999999999999987544

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.72  E-value=5.7e-08  Score=71.68  Aligned_cols=73  Identities=19%  Similarity=0.305  Sum_probs=53.7

Q ss_pred             CeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852        212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNE  286 (579)
Q Consensus       212 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~  286 (579)
                      |.+...+. ..+..|++++|.|... .+...+.|+++|................|.|.+++.+|+|.|+|++.+.
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            34444333 3578999999999875 5667899999987544222122344567999999999999999999876

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.70  E-value=6.7e-08  Score=72.19  Aligned_cols=78  Identities=17%  Similarity=0.212  Sum_probs=53.5

Q ss_pred             eCCCCEEEEEEEEe-eCCCeeEEEECCEEecC-------------CCC--EEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852         19 HQEQPALFTCKVEG-HPLPTMTWQKDGTELHA-------------TEH--YLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        19 ~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~-------------~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      ..|++|+|+|.... .....+.|++....+..             .+.  .+........+|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999998754 33447999986432210             111  234444556899999999999999999998


Q ss_pred             cCCeee-EEEEEEEE
Q psy16852         83 NIGGVA-TCSANLIV   96 (579)
Q Consensus        83 ~~~g~~-~~~~~~~v   96 (579)
                      ...|.. .....|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            776533 34455554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.70  E-value=9.1e-08  Score=73.45  Aligned_cols=71  Identities=23%  Similarity=0.335  Sum_probs=52.1

Q ss_pred             eeeeCCCCEEEEEEEEee-CCCeeEEEECCE-----Ee------------cCCCCEEEEEeC--CEEEEEEcCCCCCCCE
Q psy16852         16 VVSHQEQPALFTCKVEGH-PLPTMTWQKDGT-----EL------------HATEHYLITTVE--SVSTLEIINPTKEDIG   75 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~-----~~------------~~~~~~~~~~~~--~~~~L~i~~~~~~d~G   75 (579)
                      +.+.+|++++|.|.+.+. +...+.||+...     .+            ....++.+....  ...+|+|.+++.+|+|
T Consensus         1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            468899999999999875 556899999432     11            012333333333  5689999999999999


Q ss_pred             EEEEEEEcCCe
Q psy16852         76 VYTCKATNIGG   86 (579)
Q Consensus        76 ~Y~C~~~~~~g   86 (579)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999987554

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.70  E-value=1.7e-07  Score=70.92  Aligned_cols=76  Identities=20%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             CCCEEEEEEEEeeCC---CeeEEEECCE-----------EecC--C--CCEEEEE-----eCCEEEEEEcCCCCCCCEEE
Q psy16852         21 EQPALFTCKVEGHPL---PTMTWQKDGT-----------ELHA--T--EHYLITT-----VESVSTLEIINPTKEDIGVY   77 (579)
Q Consensus        21 G~~~~l~C~~~~~~~---~~v~W~~~g~-----------~~~~--~--~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y   77 (579)
                      |++|+|+|...+...   ..+.|++...           ....  .  ...++..     ..+..+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            789999999863221   2688887441           1110  0  0112222     12457899999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEE
Q psy16852         78 TCKATNIGGVATCSANLIV   96 (579)
Q Consensus        78 ~C~~~~~~g~~~~~~~~~v   96 (579)
                      +|.+.+..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776666666654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.70  E-value=9.4e-08  Score=71.92  Aligned_cols=68  Identities=15%  Similarity=0.267  Sum_probs=50.5

Q ss_pred             eeeeCCCCEEEEEEEEee--CCCeeEEEECCE--E---e---------cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852         16 VVSHQEQPALFTCKVEGH--PLPTMTWQKDGT--E---L---------HATEHYLITTVESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g~--~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      +.|.+|++|+|.|.+.+.  ....+.|||...  .   +         ....++..........|+|.+++.+|+|.|.|
T Consensus         1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC   80 (98)
T ss_pred             CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence            358899999999998654  445799998321  1   1         11235555555567889999999999999999


Q ss_pred             EEEc
Q psy16852         80 KATN   83 (579)
Q Consensus        80 ~~~~   83 (579)
                      .+.+
T Consensus        81 ~~~~   84 (98)
T cd04984          81 QVWD   84 (98)
T ss_pred             EEcc
Confidence            9864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.70  E-value=1.3e-07  Score=71.03  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=56.2

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeE-EEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM-EFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      .+..+.+|+++.|.|.....+...+.|+|+...   ..+..+ .+...  ...   ....+..+|+         ..+..
T Consensus         6 ~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~---~~~~~I~~y~~~--~~~---~~~gp~~~gR---------~~~~~   68 (105)
T cd05774           6 VPPQVAEGENVLLLVHNLPENLLAYAWYKGKTV---SPNFLIASYIIS--TNS---STPGPAYSGR---------ETIYP   68 (105)
T ss_pred             cCCcccCCCCEEEEecCCCCCceEEEEEcCCCC---CCCEEEEEEECC--Ccc---cccCcccCCc---------EEEeC
Confidence            344577899999999654333339999995321   111111 11100  000   0001111222         23333


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCC-eeEEEEEEEE
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVA-GSVTCTATLS  531 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~  531 (579)
                      ++   .|.|++++.+|+|.|+|.+.|.. ......++|.
T Consensus        69 ng---SL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          69 NG---SLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             CC---cEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            33   59999999999999999999987 4555566655

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>TIGR00864 PCC polycystin cation channel protein

Probab=98.68  E-value=0.0018  Score=74.05  Aligned_cols=364  Identities=13%  Similarity=0.118  Sum_probs=192.6

Q ss_pred             CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEE-ecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE--EcCCeeeEE
Q psy16852         14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTE-LHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA--TNIGGVATC   90 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~--~~~~g~~~~   90 (579)
                      ....+..|++|+|.-.........++|...+.. ......+.      .+       +-...|.|.-.+  .|..|....
T Consensus      1705 S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~------tH-------tf~~~G~y~VtVta~N~vss~~~ 1771 (2740)
T TIGR00864      1705 SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM------SH-------SFPSAGLHLVTMKAFNELGSANA 1771 (2740)
T ss_pred             cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce------EE-------EccCCceEEEEEEEEccccccce
Confidence            344566799999998776666778999876532 11111100      01       133478887754  577787777


Q ss_pred             EEEEEEEecccCCCCCceecC--CCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEEC
Q psy16852         91 SANLIVLEKEESGEAPKFTKP--LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS  168 (579)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  168 (579)
                      +..+.|.++-.   -..+...  .....+..|..+.|.-.++......+.|..++..-.....           ..    
T Consensus      1772 s~~V~VqepV~---GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~-----------v~---- 1833 (2740)
T TIGR00864      1772 SEEVDVQEPIS---GLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH-----------AC---- 1833 (2740)
T ss_pred             eEEEEEEeccc---cceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce-----------eE----
Confidence            77777765421   1122211  1222455677887777764334457778776442111111           11    


Q ss_pred             cCCCCCCeEEEEE--EEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEE
Q psy16852        169 EATPQDEAVYSVK--AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWF  246 (579)
Q Consensus       169 ~~~~~d~G~Y~C~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~  246 (579)
                       .+..+.|.|+..  |.|..+....+..+.++....          .+........+..|+.++|.+.+...+...+.|.
T Consensus      1834 -~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~----------~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~ 1902 (2740)
T TIGR00864      1834 -MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF----------GLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQ 1902 (2740)
T ss_pred             -EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc----------eEEEecccccccCCCEEEEEEEecCCCceEEEEE
Confidence             334578988755  678888777777777763211          2222334445778999999998887777789997


Q ss_pred             ECC-EEeccCceEEeCCeEEEEEcccCCCCCeEEE--EEEEcCCeeeEEEEEEEEEec-cceeeeeeeeeeccccCceee
Q psy16852        247 KNG-KEIVSKDIETKDNVTKLVIKQTTKKTTGKYE--IRVVNEAGEARTSGSVTITVA-EAETVMMDVRVESHPTASFQW  322 (579)
Q Consensus       247 ~~~-~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~--C~a~n~~g~~~~~~~~~v~~~-~~~~~~l~~~~~~~~~~~~~~  322 (579)
                      ..+ .+...      ..+..+. .  .....|.|.  -.|.|..+.......+.|.-. .+-.+.-.|.. ..+...-..
T Consensus      1903 fGdgs~~~~------t~~~t~~-H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~-~~~~g~~~t 1972 (2740)
T TIGR00864      1903 IGGAAPEVL------QPGPRFS-H--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAA-GIATGEEKN 1972 (2740)
T ss_pred             eCCCCceee------cCCCeEE-e--ecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCccc-ceecCceEE
Confidence            754 22211      0001111 1  123345564  445677777655555544322 22222223321 111111111


Q ss_pred             eecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEE--EEcCceeEEEEEEEEEEe
Q psy16852        323 FIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCT--AVNPVGEAVAAATLAVEE  400 (579)
Q Consensus       323 ~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~  400 (579)
                      +.    ..+...-+..+.|+..-..+..+..+.. ..  ...+..+     ...|.|+..  |.|..|.......+.|+.
T Consensus      1973 F~----A~v~~g~~V~f~W~f~~~~~~g~~~~~~-~G--~~vty~~-----~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~ 2040 (2740)
T TIGR00864      1973 FT----ANVQRGKPVAFAWTFDLHHLHGDSLVIH-MG--KDVSYTA-----EAAGLLEIQLGAFNALGAENITLQLEAQD 2040 (2740)
T ss_pred             EE----EEEecCCceEEEEEeeecccCCCcceee-cC--CceEEcc-----CCCcEEEEEEEEEcccCcccccEEEEEEe
Confidence            11    1222233445888755333322221111 11  1112222     467877665  568778776666777775


Q ss_pred             cccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC-CeEEEeeCCE
Q psy16852        401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYRGKE  446 (579)
Q Consensus       401 ~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~  446 (579)
                      ...     .......+.....+..++|.|.+...+. ..+.|-+++.
T Consensus      2041 ~i~-----~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDG 2082 (2740)
T TIGR00864      2041 ALM-----DAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDG 2082 (2740)
T ss_pred             hee-----eEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCC
Confidence            321     1111112334556889999999865443 4899988643

Note: this model has been restricted to the amino half because for technical reasons.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.68  E-value=2.5e-07  Score=70.93  Aligned_cols=38  Identities=16%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ....|.|.+++.+|+|.|.|.+.+..+..+..+.|+|.
T Consensus        66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence            45679999999999999999999999999999999875

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.66  E-value=3.4e-07  Score=70.06  Aligned_cols=78  Identities=23%  Similarity=0.350  Sum_probs=53.9

Q ss_pred             CCCCEEEEEEEEeeC----------CCeeEEEEC--CEEe----------cCCCCE--EEEE-----eCCEEEEEEcCCC
Q psy16852         20 QEQPALFTCKVEGHP----------LPTMTWQKD--GTEL----------HATEHY--LITT-----VESVSTLEIINPT   70 (579)
Q Consensus        20 ~G~~~~l~C~~~~~~----------~~~v~W~~~--g~~~----------~~~~~~--~~~~-----~~~~~~L~i~~~~   70 (579)
                      -|++|+|+|.....+          ...|.|||.  +...          .....+  ++..     ..+..+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            389999999997543          246999984  2111          001111  2222     2356889999999


Q ss_pred             CCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         71 KEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      .+|+|.|.|.+.......+..+.|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999998866666777777775

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.66  E-value=5.2e-07  Score=68.31  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=32.6

Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ...+|+|.+++.+|+|.|+|.+.|..+..+..+.|+|
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            4577999999999999999999998888888888775

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.65  E-value=2.1e-07  Score=71.79  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=54.2

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +....+.+|++++|.|.+.+ +.+.+.|+|....  ......+.           +.......   +. .....++.+..
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g--~~~~~l~~-----------~~~~~~~~---~~-~~~~~r~~~~~   66 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPG--KGLQLLFY-----------SNGGSLNE---EE-GDPKDRFSASR   66 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCC--CCcEEEEE-----------EcCCCceE---ec-CccCCceEEEC
Confidence            44567899999999999987 7779999995321  01111111           11000000   00 01112222222


Q ss_pred             e-CCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        494 D-GNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       494 ~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      + .....|+|.+++.+|+|.|.|.+.+..|
T Consensus        67 ~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~   96 (110)
T cd05899          67 PSLTRSSLTIKSAEPEDSAVYLCASSLGGG   96 (110)
T ss_pred             cCCCccEEEECCCChhhCEEEEEEeeCCCC
Confidence            2 2567899999999999999999987543

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.63  E-value=1.9e-07  Score=72.62  Aligned_cols=75  Identities=17%  Similarity=0.264  Sum_probs=51.2

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeC----CCeeEEEECCE------Ee---------c-CCCCE--EEEEe----CCEEEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHP----LPTMTWQKDGT------EL---------H-ATEHY--LITTV----ESVSTLE   65 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~----~~~v~W~~~g~------~~---------~-~~~~~--~~~~~----~~~~~L~   65 (579)
                      .|..+.+.+|+.++|.|.+....    ...+.||+...      .+         . ...++  ++...    .+..+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            47788999999999999986432    14699987321      11         0 11122  11111    2357899


Q ss_pred             EcCCCCCCCEEEEEEEEcCCe
Q psy16852         66 IINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      |.+++.+|+|.|+|.+.+...
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCC
Confidence            999999999999999987544

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.63  E-value=3.8e-07  Score=71.32  Aligned_cols=88  Identities=15%  Similarity=0.289  Sum_probs=60.4

Q ss_pred             cccccCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCE-----Eec--------------CCCCEEEEEe--CCEEEEEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGT-----ELH--------------ATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~-----~~~--------------~~~~~~~~~~--~~~~~L~i   66 (579)
                      +...|..+.+.+|++++|.|... ......+.|++...     .+.              ...+..+...  ....+|.|
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i   83 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI   83 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence            34458889999999999999998 34455899998322     111              1123333333  23789999


Q ss_pred             cCCCCCCCEEEEEEEEcCC-eeeEEEEEEEE
Q psy16852         67 INPTKEDIGVYTCKATNIG-GVATCSANLIV   96 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~-g~~~~~~~~~v   96 (579)
                      .+++.+|+|.|.|.+.... ......+.|.|
T Consensus        84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            9999999999999998762 33334444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.62  E-value=3.2e-07  Score=71.62  Aligned_cols=90  Identities=18%  Similarity=0.229  Sum_probs=54.8

Q ss_pred             CceeeecCCCeEEEEEEEe--eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        415 KPVIAEAQSPATLKATVTG--RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g--~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      ....+.+|+.++|.|.+.+  .+.+.+.|++....  ......+..           ..   .+...+.-.....++.+.
T Consensus         6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g--~~~~~l~~~-----------~~---~~~~~~~~~~~~~r~~~~   69 (116)
T cd04982           6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPG--QALERLLYV-----------SS---TSTQRKLSGGTKNKFEAR   69 (116)
T ss_pred             CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCC--CCCEEEEEE-----------ec---CCCcEEeCcccCCCEEEE
Confidence            4456889999999999987  67779999995310  011111111           10   000000001112233444


Q ss_pred             eeC--CeeEEEEeecccccceeEEEEEEeC
Q psy16852        493 TDG--NRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       493 ~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .+.  ....|+|.+++.+|+|.|.|.+...
T Consensus        70 ~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          70 KDVGKSTSTLTIQNLEKEDSATYYCAYWES   99 (116)
T ss_pred             EECCCCEEEEEEEECCHHHCEEEEEEEecC
Confidence            444  6788999999999999999998643

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.61  E-value=7.4e-07  Score=67.81  Aligned_cols=39  Identities=13%  Similarity=0.179  Sum_probs=34.4

Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ....+|+|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus        71 ~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          71 PSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             CCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            356789999999999999999999888888888888875

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.60  E-value=6e-07  Score=68.88  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=53.7

Q ss_pred             CceEEccCCcEEEEEEEEeec----CCeEEEEE---------------CCEEccCC-----CCceEEEcCCCCeEEEEEC
Q psy16852        113 KPVIAEAQSPATLKATVTGRP----TPSICWYR---------------GKEEILPD-----NGHTMEFNPTTGECVLSIS  168 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~---------------~~~~~~~~-----~~~~~~~~~~~~~~~l~i~  168 (579)
                      ..+.+..|+.++|.|.+....    ...|.|.+               ++......     .+..+..+...+..+|.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            456678899999999986532    36999933               23322111     1333333445567899999


Q ss_pred             cCCCCCCeEEEEEEEcCCcee
Q psy16852        169 EATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      +++.+|.|.|+|.+.|..+..
T Consensus        86 nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             cCCcccCEEEEEEEEcCCCcC
Confidence            999999999999999876543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.60  E-value=2.9e-07  Score=71.80  Aligned_cols=75  Identities=19%  Similarity=0.285  Sum_probs=54.7

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee-CCCeeEEEEC--CEE---e---------cCCCCEEEEE--eCCEEEEEEcCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKD--GTE---L---------HATEHYLITT--VESVSTLEIINPTK   71 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~--g~~---~---------~~~~~~~~~~--~~~~~~L~i~~~~~   71 (579)
                      +...|..+.+.+|++|+|+|..... ....+.|||.  +..   +         ....++....  .....+|+|.+++.
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   81 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL   81 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence            4566888999999999999998653 3457999983  111   1         1123444432  24568899999999


Q ss_pred             CCCEEEEEEEEc
Q psy16852         72 EDIGVYTCKATN   83 (579)
Q Consensus        72 ~d~G~Y~C~~~~   83 (579)
                      +|+|.|.|.+..
T Consensus        82 ~Dsg~Y~C~~~~   93 (116)
T cd07706          82 EDSAKYFCALST   93 (116)
T ss_pred             HHCEEEEEEEEC
Confidence            999999999974

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.58  E-value=2.8e-07  Score=68.67  Aligned_cols=65  Identities=25%  Similarity=0.229  Sum_probs=46.5

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEECCEEecC----------------CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKDGTELHA----------------TEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~g~~~~~----------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      |++|+|.|.........+.|+++......                ....+..... +.+|.|.+++.+|+|.|+|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-NGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-CceEEEccCCchhcEEEEEEEEcC
Confidence            89999999987655568999996532110                0111222323 388999999999999999999876


Q ss_pred             Ce
Q psy16852         85 GG   86 (579)
Q Consensus        85 ~g   86 (579)
                      .+
T Consensus        80 ~~   81 (92)
T cd05741          80 NG   81 (92)
T ss_pred             CC
Confidence            54

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.57  E-value=2.5e-07  Score=67.99  Aligned_cols=79  Identities=13%  Similarity=0.121  Sum_probs=54.0

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEe-eCCCe--eEEEECCEEecCCCCEEE--EEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEG-HPLPT--MTWQKDGTELHATEHYLI--TTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~--v~W~~~g~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .+...+.+..+.+|+.++|+|.+.+ .|.+.  |.|||++..+........  .......+|++..-..+|...|+|+|.
T Consensus         3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~   82 (100)
T cd05755           3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETE   82 (100)
T ss_pred             eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence            3455566667899999999999976 56665  799999999864321110  111224677776555555669999998


Q ss_pred             cCCe
Q psy16852         83 NIGG   86 (579)
Q Consensus        83 ~~~g   86 (579)
                      +..+
T Consensus        83 l~l~   86 (100)
T cd05755          83 LDLR   86 (100)
T ss_pred             eccC
Confidence            7654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.57  E-value=6.9e-07  Score=67.15  Aligned_cols=74  Identities=18%  Similarity=0.315  Sum_probs=49.3

Q ss_pred             CEEEEEEEEeeC---CCeeEEEECCE-----Ee-----------cCC--CCEEEEE--eCCEEEEEEcCCCCCCCEEEEE
Q psy16852         23 PALFTCKVEGHP---LPTMTWQKDGT-----EL-----------HAT--EHYLITT--VESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus        23 ~~~l~C~~~~~~---~~~v~W~~~g~-----~~-----------~~~--~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      +++|+|......   ...+.|+|...     .+           ...  .+.++..  .....+|+|.+++.+|+|.|+|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999986543   33799998321     11           111  1222221  1236789999999999999999


Q ss_pred             EEEc-CCeeeEEEEEEEE
Q psy16852         80 KATN-IGGVATCSANLIV   96 (579)
Q Consensus        80 ~~~~-~~g~~~~~~~~~v   96 (579)
                      .+.+ ..|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9986 5566666666665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.57  E-value=5.4e-07  Score=67.56  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=53.9

Q ss_pred             ecCCCeEEEEEEEee-CC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        420 EAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      ..|+.++|.|.+.|+ |. +.++|+++|..+.....               .........|.|+..              
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~---------------~~~~~~~~~gt~~~~--------------   61 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT---------------TTPPVPNSDGTYSVS--------------   61 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee---------------ccccccCCCCCEEEE--------------
Confidence            368999999999997 64 58999999998855432               122333444555433              


Q ss_pred             eEEEEeecccccceeEEEEEEeCCee
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      +.|.+.....+|.|.|+|.|.|....
T Consensus        62 s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          62 SQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             EEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            34888877778999999999987654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.56  E-value=8.7e-07  Score=71.57  Aligned_cols=87  Identities=17%  Similarity=0.245  Sum_probs=61.9

Q ss_pred             cCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEe----------cCC--CCEE-EEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852         13 IQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTEL----------HAT--EHYL-ITTVESVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~----------~~~--~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~   78 (579)
                      ...+.|++|++|+|.|... +...+.+.|+|....+          ..+  .+.. .........|+|.+++.+|+|.|+
T Consensus        22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~  101 (189)
T PHA02987         22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT  101 (189)
T ss_pred             eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence            3457899999999999984 5556789999964322          111  1222 122234688999999999999999


Q ss_pred             EEEEc-CCe-eeEEEEEEEEEec
Q psy16852         79 CKATN-IGG-VATCSANLIVLEK   99 (579)
Q Consensus        79 C~~~~-~~g-~~~~~~~~~v~~~   99 (579)
                      |.... ..| ..+..+-|+|...
T Consensus       102 C~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        102 CIFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEEEecCCCCCceeEEEEEEEch
Confidence            99863 345 6777778888654

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.55  E-value=1.1e-06  Score=66.57  Aligned_cols=77  Identities=17%  Similarity=0.187  Sum_probs=52.7

Q ss_pred             CCCEEEEEEEEeeC-------CCeeEEEEC-----CEEe------------cCCCCEEEEEe-----CCEEEEEEcCCCC
Q psy16852         21 EQPALFTCKVEGHP-------LPTMTWQKD-----GTEL------------HATEHYLITTV-----ESVSTLEIINPTK   71 (579)
Q Consensus        21 G~~~~l~C~~~~~~-------~~~v~W~~~-----g~~~------------~~~~~~~~~~~-----~~~~~L~i~~~~~   71 (579)
                      |++++|+|.+.-.|       .+.+.|+|.     .+..            ....+-++...     .+..+|+|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999975322       357999874     1111            11122233332     2468999999999


Q ss_pred             CCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         72 EDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      +|+|.|+|.+.......+..+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999866556666677664

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.53  E-value=1.4e-06  Score=66.71  Aligned_cols=40  Identities=18%  Similarity=0.210  Sum_probs=34.6

Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      +.....|+|.+++.+|+|.|.|.+..........++|+|.
T Consensus        68 ~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          68 NRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             CCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            3456779999999999999999999987788888888875

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.53  E-value=1.5e-06  Score=67.86  Aligned_cols=103  Identities=18%  Similarity=0.259  Sum_probs=59.3

Q ss_pred             CCceeeecCCCeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        414 LKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      +....+.+|+++.|.|... ......+.|++...    ...           ..+.+ .........+.-.....+..+.
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~----~~~-----------~~~i~-~~~~~~~~~~~~~~~~~r~~~~   71 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSP----GQG-----------PQLII-RYSLSSTNETPTPSYSGRFTFS   71 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEET----TSE-----------EEEEE-EEETTEEEEEEETTETTTEEEE
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECc----ccc-----------ceeee-eeccceeeeccccceeeeeeee
Confidence            4556789999999999998 44555899999321    000           00111 0000000000000111122233


Q ss_pred             ee--CCeeEEEEeecccccceeEEEEEEeC-CeeEEEEEEEEE
Q psy16852        493 TD--GNRSVLLISKITRDQIGDVTCRAENV-AGSVTCTATLSL  532 (579)
Q Consensus       493 ~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l~v  532 (579)
                      .+  .....|+|.+++.+|+|.|.|.+... .+.....+.|+|
T Consensus        72 ~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   72 GNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             EETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             ecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            33  34678999999999999999999887 334455555553

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.51  E-value=1.5e-06  Score=61.21  Aligned_cols=74  Identities=19%  Similarity=0.171  Sum_probs=49.6

Q ss_pred             EEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC---CEEEEEEcCCCCCCCEEEEEEEEcCCe-eeEEEEEEEEE
Q psy16852         24 ALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE---SVSTLEIINPTKEDIGVYTCKATNIGG-VATCSANLIVL   97 (579)
Q Consensus        24 ~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~g-~~~~~~~~~v~   97 (579)
                      +.|+|.+.| .|.+.|+||+++.++.......-....   ..++|.|..-..+|...|+|+|.|..- .......|.|+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            689999966 577899999999998654221101111   246788877777788899999988653 23334444443

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.51  E-value=8.9e-07  Score=67.90  Aligned_cols=87  Identities=20%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             eeecCCCeEEEEEEEee-CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC-
Q psy16852        418 IAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG-  495 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~-  495 (579)
                      ++.+|+.++|.|.+.+. +...+.|++....   .....+........ .     ......+++.         +..+. 
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~---~~~~~i~~~~~~~~-~-----~~~~~~~r~~---------~~~~~~   63 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPG---KGPELLIYISSNGS-Q-----YAGGVKGRFS---------GTRDSS   63 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCC---CCCEEEEEEeCCCC-c-----cCccCCCcEE---------EEEecc
Confidence            46789999999999876 6669999995321   11111111000000 0     0111222222         22222 


Q ss_pred             -CeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        496 -NRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       496 -~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                       ....|+|.+++.+|+|.|.|.+.+..+
T Consensus        64 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          64 KSSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             CCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence             456799999999999999999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.51  E-value=2e-06  Score=66.46  Aligned_cols=94  Identities=17%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             CceeeecCCCeEEEEEEEeeC----CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEc-cccCCCceeEEEEeeccee
Q psy16852        415 KPVIAEAQSPATLKATVTGRP----TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS-EATPQDEAVYSVKASSTET  489 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p----~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~c~~~~~~~  489 (579)
                      ..+.+.+|+.++|.|.....+    ...|.|++..  ........+          +... .......+.|.-++.-.  
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~--~~~~~~~~v----------~~~~~~~~~~~~~~f~~R~~~~--   71 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRP--LDGGREESV----------FYYHKRPYPPPDGRFKGRVVWD--   71 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEEC--CCCCceeEE----------EEECCCccccCcccccCeEEEe--
Confidence            445688999999999987443    2369998621  100110001          1111 01111223332222100  


Q ss_pred             eeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                       -........|+|.+++.+|+|.|+|.+.|..+.
T Consensus        72 -~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          72 -GNIMRRDASILIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             -cCCcCCceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence             011334567999999999999999999987663

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.51  E-value=7.4e-07  Score=66.34  Aligned_cols=90  Identities=22%  Similarity=0.340  Sum_probs=52.2

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |++|+|.|.....+...+.|+++.......   .+........   ..      ..+.|     ..+..+..  . ..|.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~---~i~~~~~~~~---~~------~~~~~-----~~R~~~~~--~-~sL~   60 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEA---EIASYIATNS---TV------FGPAY-----SGRETIYP--N-GSLL   60 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcce---EEEEEecCCc---ee------ECCCc-----CCeEEEcC--C-ceEE
Confidence            789999999876666699999975432111   1100000000   00      00011     11122222  2 6799


Q ss_pred             EeecccccceeEEEEEEeCCe-eEEEEEEEE
Q psy16852        502 ISKITRDQIGDVTCRAENVAG-SVTCTATLS  531 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~  531 (579)
                      |.+++.+|+|.|+|.+....| .....+.|.
T Consensus        61 I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~   91 (92)
T cd05741          61 IQNLTKEDSGTYTLQIISTNGVTENAKFFLR   91 (92)
T ss_pred             EccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence            999999999999999998864 344444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.49  E-value=1e-06  Score=67.46  Aligned_cols=86  Identities=12%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             CCceeeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      +....+.+|++++|.|.+.+.. ...+.|++....  .... .+..  ...       .....+.++         +.+.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g--~~~~-~l~~--~~~-------~~~~~~~~r---------~~~~   65 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPG--QAPK-LLIY--GAS-------TLASGTPSR---------FSGS   65 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCC--CCcE-EEEE--Ccc-------ccCCCCCCC---------EEEe
Confidence            3445689999999999997665 568999984310  0001 1110  000       000111122         2333


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .+.....|+|.+++.+|+|.|.|.+.+.
T Consensus        66 ~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          66 GSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             ccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            3456677999999999999999999754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.49  E-value=1.2e-06  Score=66.02  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=32.3

Q ss_pred             CeeEEEEeecccccceeEEEEEEe-CCeeEEEEEEEEE
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAEN-VAGSVTCTATLSL  532 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v  532 (579)
                      ....|+|.+++.+|+|.|.|.+.+ ..|.....+.|.|
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            467799999999999999999875 6788888888886

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.49  E-value=1.8e-06  Score=64.11  Aligned_cols=74  Identities=24%  Similarity=0.331  Sum_probs=49.7

Q ss_pred             CEEEEEEEEee-CC---CeeEEEECC--E--Ee-----------cCCCCEEEEEe---CCEEEEEEcCCCCCCCEEEEEE
Q psy16852         23 PALFTCKVEGH-PL---PTMTWQKDG--T--EL-----------HATEHYLITTV---ESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus        23 ~~~l~C~~~~~-~~---~~v~W~~~g--~--~~-----------~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      .++|.|..... +.   .+|.|.+..  .  .+           .....-++...   .+..+|+|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            68999999742 21   169998731  1  11           11111122221   2358899999999999999999


Q ss_pred             EEc-CCeeeEEEEEEEE
Q psy16852         81 ATN-IGGVATCSANLIV   96 (579)
Q Consensus        81 ~~~-~~g~~~~~~~~~v   96 (579)
                      +.+ ..|..+..+.|+|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            998 5677777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.47  E-value=2.1e-06  Score=61.84  Aligned_cols=68  Identities=22%  Similarity=0.431  Sum_probs=47.3

Q ss_pred             eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      +.|.|.+.+ +|.+.|.|++++..+....  ..               ....+.|.|+..              +.|.+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~~---------------~~~~~~~~~~~~--------------s~l~~~   50 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK--LK---------------EEDENGKTFTVT--------------SSLRFQ   50 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce--ee---------------EecCCCCEEEEE--------------EEEEEE
Confidence            689999976 5888999999999885321  10               111223445332              347777


Q ss_pred             ecccccceeEEEEEEeCCee
Q psy16852        504 KITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      ....++.+.|+|.|.|....
T Consensus        51 ~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761          51 VDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             cchhhCCCEEEEEEeChhcC
Confidence            77778888999999998664

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.46  E-value=1.2e-06  Score=68.46  Aligned_cols=74  Identities=15%  Similarity=0.117  Sum_probs=51.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC------CCeeEEEECCE-----E-ec--C---------CCCEEEE--EeCCEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP------LPTMTWQKDGT-----E-LH--A---------TEHYLIT--TVESVSTLE   65 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~------~~~v~W~~~g~-----~-~~--~---------~~~~~~~--~~~~~~~L~   65 (579)
                      ..|..+.+.+|+.|+|.|......      ...+.||+...     . +.  .         ..++.+.  ...+...|+
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~   83 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL   83 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence            457889999999999999875322      23699998431     1 10  0         1233332  234468899


Q ss_pred             EcCCCCCCCEEEEEEEEcC
Q psy16852         66 IINPTKEDIGVYTCKATNI   84 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~   84 (579)
                      |.+++.+|+|.|.|++...
T Consensus        84 I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          84 ISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EccCChhhCeEEEEEEEcC
Confidence            9999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.46  E-value=1.2e-06  Score=65.46  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=55.2

Q ss_pred             ecCCCeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce--eeeeeeCC
Q psy16852        420 EAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE--TKIMTDGN  496 (579)
Q Consensus       420 ~~g~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~--~~~~~~~~  496 (579)
                      ..|++|+|.|.... .....+.|+|....+......      . +.               ......++.  .++..+..
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~------~-~~---------------~~~~~~~~~f~~R~~~~~~   59 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGE------E-TA---------------PEIIVTDPSYKERVNFSQN   59 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCC------C-CC---------------CccEEeCCCceeeEEecCC
Confidence            36999999998754 344589999974322110000      0 00               000001111  12333455


Q ss_pred             eeEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEE
Q psy16852        497 RSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSL  532 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  532 (579)
                      ...|+|.+++.+|+|.|.|.+.+..|.. ...+.|.|
T Consensus        60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            6779999999999999999999887643 55566654

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.46  E-value=2.5e-06  Score=60.02  Aligned_cols=76  Identities=18%  Similarity=0.306  Sum_probs=50.1

Q ss_pred             eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      +.|+|.+.| .|.+.|.|++++.++..........  ..+                              ....++|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~--~~~------------------------------~t~~S~L~~~   49 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETW--SRM------------------------------FTVTSQLMLK   49 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceecc--CCC------------------------------cEEEEEEEEE
Confidence            689999875 6888999999999985432110000  000                              1234668888


Q ss_pred             ecccccceeEEEEEEeCCe-eEEEEEEEEE
Q psy16852        504 KITRDQIGDVTCRAENVAG-SVTCTATLSL  532 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v  532 (579)
                      .-..+|...|+|+|.|..- ....+..|.|
T Consensus        50 p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V   79 (82)
T cd05883          50 VTKEDDGVPVICLVDHPAVKDLQTQRYLEV   79 (82)
T ss_pred             CchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence            8888888899999988743 2344445544

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.45  E-value=2.1e-06  Score=60.04  Aligned_cols=77  Identities=16%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             ceeeeCCCCEEEEEEEEeeCC--CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852         15 PVVSHQEQPALFTCKVEGHPL--PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA   92 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~   92 (579)
                      +..+..|++++|+|.....+.  +.|+|...+...-.      ....+..+|.+.+++..|+|..+|.+....-.....+
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~   81 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL   81 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence            446889999999999965444  48999986554321      1112447899999999999999999986545555556


Q ss_pred             EEEEE
Q psy16852         93 NLIVL   97 (579)
Q Consensus        93 ~~~v~   97 (579)
                      .+.|+
T Consensus        82 ~V~Vl   86 (88)
T cd07694          82 DIKVL   86 (88)
T ss_pred             eEEEE
Confidence            66654

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.44  E-value=6.2e-07  Score=67.22  Aligned_cols=68  Identities=25%  Similarity=0.304  Sum_probs=49.9

Q ss_pred             eCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCC-EEEEEeC-C----EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         19 HQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEH-YLITTVE-S----VSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        19 ~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~-~~~~~~~-~----~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      ..|+.++|.|.+.|. |. +.++|+++|..+..... ....... +    .+.|.|.....+|.|.|+|+|.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            579999999999987 53 58999999998865542 1111111 1    35677777777899999999988654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.43  E-value=1.4e-06  Score=65.47  Aligned_cols=82  Identities=15%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             eeecCCCeEEEEEEEee--CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        418 IAEAQSPATLKATVTGR--PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~--p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      ++.+|++++|.|.+.+.  ....+.|++....  ......+.           ....  ...+      ..+++.+..+.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g--~~~~~l~~-----------~~~~--~~~~------~~~rf~~~~~~   60 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPG--SAPRYLIY-----------EDSD--RPSG------IPDRFSGSKSG   60 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCC--CCccEEEE-----------eccc--cCCC------CCCCEEEEccC
Confidence            46789999999998765  4567999984311  01111111           1100  0000      12233445556


Q ss_pred             CeeEEEEeecccccceeEEEEEEeC
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ....|+|.+++.+|+|.|.|.+.+.
T Consensus        61 ~~~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          61 NTASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             CEEEEEECCCChhhCEEEEEEEccC
Confidence            7788999999999999999998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.42  E-value=7.3e-06  Score=60.86  Aligned_cols=37  Identities=14%  Similarity=0.306  Sum_probs=33.0

Q ss_pred             CeeEEEEeecccccceeEEEEEEe-CCeeEEEEEEEEE
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAEN-VAGSVTCTATLSL  532 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v  532 (579)
                      ..+.|+|.+++.+|+|.|+|.+.| ..|..+..+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            446699999999999999999999 7888888888886

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.40  E-value=2.3e-06  Score=64.29  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             CeeEEEEeecccccceeEEEEEEe-CCeeEEEEEEEEE
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAEN-VAGSVTCTATLSL  532 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v  532 (579)
                      ..+.|+|.+++.+|+|.|.|.+.+ ..|..++.+.|+|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            456699999999999999999998 6787777888776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.40  E-value=2.3e-06  Score=64.07  Aligned_cols=76  Identities=22%  Similarity=0.288  Sum_probs=50.1

Q ss_pred             CCCEEEEEEEEeeCC-CeeEEEECCE----Eec-----C----CCCE--EEEE---eCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852         21 EQPALFTCKVEGHPL-PTMTWQKDGT----ELH-----A----TEHY--LITT---VESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus        21 G~~~~l~C~~~~~~~-~~v~W~~~g~----~~~-----~----~~~~--~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      |++++|.|....... -.+.|+|...    .+.     .    ...+  +...   .....+|+|.+++.+|+|.|+|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            899999999754332 2699998432    110     0    0111  1111   124678999999999999999998


Q ss_pred             Ec-CCeeeEEEEEEEE
Q psy16852         82 TN-IGGVATCSANLIV   96 (579)
Q Consensus        82 ~~-~~g~~~~~~~~~v   96 (579)
                      .. ..|.....+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            74 4567676777766

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.39  E-value=2.4e-06  Score=63.97  Aligned_cols=39  Identities=23%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             eCCeeEEEEeecccccceeEEEEEE-eCCeeEEEEEEEEE
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAE-NVAGSVTCTATLSL  532 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~v  532 (579)
                      +...+.|+|.+++.+|+|.|+|.+. ...|.....+.|+|
T Consensus        57 ~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          57 GLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            3456779999999999999999976 55788888888876

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.38  E-value=3.4e-06  Score=61.93  Aligned_cols=75  Identities=23%  Similarity=0.323  Sum_probs=50.9

Q ss_pred             CCEEEEEEEEeeC-CCeeEEEECC----EEec-----------CCCCEEEEE---eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852         22 QPALFTCKVEGHP-LPTMTWQKDG----TELH-----------ATEHYLITT---VESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        22 ~~~~l~C~~~~~~-~~~v~W~~~g----~~~~-----------~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      ++++|+|.....+ ...|.|.|..    ..+.           .....++..   .....+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            4789999986422 3479998832    1221           111112222   2336899999999999999999986


Q ss_pred             -cCCeeeEEEEEEEE
Q psy16852         83 -NIGGVATCSANLIV   96 (579)
Q Consensus        83 -~~~g~~~~~~~~~v   96 (579)
                       ...|....++.|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             56688888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.37  E-value=1e-05  Score=61.37  Aligned_cols=38  Identities=18%  Similarity=0.230  Sum_probs=34.8

Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ...+|.|.+++.+|+|.|+|.+.+........++|+|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            45789999999999999999999999999999999886

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.37  E-value=8.7e-06  Score=61.68  Aligned_cols=77  Identities=18%  Similarity=0.314  Sum_probs=52.8

Q ss_pred             CCCEEEEEEEEeeC-----------CCeeEEEEC-----CE-----Ee----------cCCCCEEEEEe-----CCEEEE
Q psy16852         21 EQPALFTCKVEGHP-----------LPTMTWQKD-----GT-----EL----------HATEHYLITTV-----ESVSTL   64 (579)
Q Consensus        21 G~~~~l~C~~~~~~-----------~~~v~W~~~-----g~-----~~----------~~~~~~~~~~~-----~~~~~L   64 (579)
                      |++++|+|.+.-.|           ...|.|++-     |.     .+          ....+-+....     .+..+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            78999999997433           127999873     11     11          01112222321     246899


Q ss_pred             EEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        65 ~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      .|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999999999877666777777764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.36  E-value=4e-06  Score=60.37  Aligned_cols=62  Identities=21%  Similarity=0.349  Sum_probs=43.3

Q ss_pred             EEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCC-----EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         24 ALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVES-----VSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        24 ~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      +.|+|.+.+. |.+.++|+++|+.+.... .......+     .+.|.+.....+|.+.|+|+|.+...
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence            6899999764 788999999999886433 11111111     24566666666777899999998754

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.36  E-value=5e-06  Score=59.78  Aligned_cols=69  Identities=20%  Similarity=0.376  Sum_probs=47.4

Q ss_pred             eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      ++|+|.+.| +|.+.|.|+++|..+..... .+..               ..+.|.|+..              +.|.+.
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~---------------~~~~~t~~~~--------------s~l~~~   51 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLE---------------DGNGKTFTVS--------------SSVEFQ   51 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEE---------------CCCCCEEEEE--------------EEEEEE
Confidence            689999987 58889999999998854321 1111               1122344433              337777


Q ss_pred             ecccccceeEEEEEEeCCee
Q psy16852        504 KITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      ....+|...|+|.|.+....
T Consensus        52 ~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705          52 VTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             ecchhCCCEEEEEEECcccC
Confidence            77788889999999987643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.34  E-value=2.3e-06  Score=65.38  Aligned_cols=68  Identities=19%  Similarity=0.374  Sum_probs=47.3

Q ss_pred             eeeeCCCCEEEEEEEEeeC-CCeeEEEECCEE---------e--c-----------CCCCEEEEEe--CCEEEEEEcCCC
Q psy16852         16 VVSHQEQPALFTCKVEGHP-LPTMTWQKDGTE---------L--H-----------ATEHYLITTV--ESVSTLEIINPT   70 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g~~---------~--~-----------~~~~~~~~~~--~~~~~L~i~~~~   70 (579)
                      +.|++|++|+|+|.+.+.. ...+.|||....         +  .           ...++.....  .....|+|.+++
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            3689999999999986533 347999983221         0  0           0134443222  335789999999


Q ss_pred             CCCCEEEEEEEEc
Q psy16852         71 KEDIGVYTCKATN   83 (579)
Q Consensus        71 ~~d~G~Y~C~~~~   83 (579)
                      .+|+|.|.|...+
T Consensus        81 ~~Dsg~YyCa~~~   93 (107)
T cd07700          81 PEDSGTYFCMTVG   93 (107)
T ss_pred             HHHCEEEEEeEcC
Confidence            9999999999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.34  E-value=2e-06  Score=64.75  Aligned_cols=69  Identities=20%  Similarity=0.244  Sum_probs=49.0

Q ss_pred             eeeeCCCCEEEEEEEEe-eCCCeeEEEECCEE-----e--------cCCCCEEEEEe--CCEEEEEEcCCCCCCCEEEEE
Q psy16852         16 VVSHQEQPALFTCKVEG-HPLPTMTWQKDGTE-----L--------HATEHYLITTV--ESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~-----~--------~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      +.+.+|++|+|.|.... .....+.|||....     +        ....++.....  .+...|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            46899999999999864 23457999985421     1        11233433222  356899999999999999999


Q ss_pred             EEEcC
Q psy16852         80 KATNI   84 (579)
Q Consensus        80 ~~~~~   84 (579)
                      .+...
T Consensus        82 ~~~~~   86 (98)
T cd05716          82 GVGDD   86 (98)
T ss_pred             EcccC
Confidence            98754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.34  E-value=4.5e-06  Score=64.95  Aligned_cols=76  Identities=22%  Similarity=0.253  Sum_probs=50.5

Q ss_pred             CCceEEccCCcEEEEEEEEeec----CCeEEEEECCE------Ecc----------CCC----CceEEEcCCCCeEEEEE
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP----TPSICWYRGKE------EIL----------PDN----GHTMEFNPTTGECVLSI  167 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~------~~~----------~~~----~~~~~~~~~~~~~~l~i  167 (579)
                      +..+.+.+|+.++|.|.+....    ...+.|++...      .+.          ...    +..+..+...+..+|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4556788999999999986432    25799987321      110          001    11112223345688999


Q ss_pred             CcCCCCCCeEEEEEEEcCCc
Q psy16852        168 SEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      .+++.+|+|.|.|.+.+...
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999987644

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.33  E-value=5.8e-06  Score=59.44  Aligned_cols=62  Identities=21%  Similarity=0.366  Sum_probs=44.2

Q ss_pred             EEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCC------EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         24 ALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVES------VSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        24 ~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      ++|+|.+.+. |.+.|+|+++|+.+..... .......      .+.|.|.....+|...|+|+|.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            6899999774 8889999999998865432 2222221      24566656667778899999998754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.32  E-value=2.3e-06  Score=64.85  Aligned_cols=66  Identities=18%  Similarity=0.278  Sum_probs=47.0

Q ss_pred             eeeCCCCEEEEEEEEeeCCCeeEEEECCEE-------e---cC------------CCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852         17 VSHQEQPALFTCKVEGHPLPTMTWQKDGTE-------L---HA------------TEHYLITTVESVSTLEIINPTKEDI   74 (579)
Q Consensus        17 ~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~-------~---~~------------~~~~~~~~~~~~~~L~i~~~~~~d~   74 (579)
                      .+++|++|+|.|.........+.|||....       +   ..            ..++..........|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            478999999999986544457999984321       1   10            1223333344667899999999999


Q ss_pred             EEEEEEEE
Q psy16852         75 GVYTCKAT   82 (579)
Q Consensus        75 G~Y~C~~~   82 (579)
                      |.|.|.+.
T Consensus        82 gtY~Ca~~   89 (104)
T cd05720          82 GYYFCSVA   89 (104)
T ss_pred             EEEEEEEc
Confidence            99999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.30  E-value=6.7e-06  Score=60.37  Aligned_cols=38  Identities=16%  Similarity=0.323  Sum_probs=33.1

Q ss_pred             CCeeEEEEeecccccceeEEEEE-EeCCeeEEEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRA-ENVAGSVTCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~v  532 (579)
                      ...+.|.|.+++.+|+|.|+|.+ ....|+..++..|+|
T Consensus        57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          57 LLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             CCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            34577999999999999999996 667999999999986

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.30  E-value=6.4e-06  Score=59.05  Aligned_cols=69  Identities=19%  Similarity=0.342  Sum_probs=46.9

Q ss_pred             eEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEe
Q psy16852        425 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS  503 (579)
Q Consensus       425 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~  503 (579)
                      ++|+|.+.| +|...++|+++|..+.......                ......|.|+-              .+.|.+.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~----------------~~~~~~~t~~~--------------~s~L~~~   51 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLK----------------EEDANRKTFTV--------------SSTLDFR   51 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeE----------------eeCCCCCEEEE--------------EEEEEEE
Confidence            689999987 6777999999999975322111                11222344433              3348887


Q ss_pred             ecccccceeEEEEEEeCCee
Q psy16852        504 KITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       504 ~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      .-..+|...|+|+|.|..-.
T Consensus        52 ~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884          52 VDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             cccccCCCEEEEEEechhcC
Confidence            77777888999999887543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.29  E-value=6.8e-06  Score=63.76  Aligned_cols=73  Identities=22%  Similarity=0.351  Sum_probs=51.3

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E-E--e---c-----------CCCCEEEEEeC--CEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T-E--L---H-----------ATEHYLITTVE--SVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~-~--~---~-----------~~~~~~~~~~~--~~~~L~i~   67 (579)
                      ..|..+.+.+|++|+|.|......  ...+.|||-.  . +  +   .           ...++......  ....|+|.
T Consensus         2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (117)
T cd04981           2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN   81 (117)
T ss_pred             ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence            357888999999999999875432  3469999822  1 1  1   0           01344444333  34679999


Q ss_pred             CCCCCCCEEEEEEEEc
Q psy16852         68 NPTKEDIGVYTCKATN   83 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~   83 (579)
                      +++.+|+|.|.|.+..
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.28  E-value=0.00017  Score=66.04  Aligned_cols=172  Identities=15%  Similarity=0.134  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC--CeEE
Q psy16852         62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT--PSIC  138 (579)
Q Consensus        62 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~i~  138 (579)
                      ..|.|.+++...+|.|+=...+..+.......++|..-    .+|.+...+.  -+.+|+...-.|.+..+ |+  ..+.
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y----r~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lr  255 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF----RRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFR  255 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe----cCCcccccCC--ccccCCCceEEEEeeeecCCCceEEE
Confidence            45999999999999999998776664444334444322    2444444333  35689999999998654 43  5999


Q ss_pred             EEECCEEccCCCCc-eEEEcCCCC---eEEEEECcCCCC-CCeEEEEEEEcCCcee-EEEEEEEEeeccccCCCCccCCC
Q psy16852        139 WYRGKEEILPDNGH-TMEFNPTTG---ECVLSISEATPQ-DEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAP  212 (579)
Q Consensus       139 W~~~~~~~~~~~~~-~~~~~~~~~---~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~p  212 (579)
                      ||.|+..+...... .......++   .++|.+...... .-=..+|.+.-..+.. .....-..       .+.++.+|
T Consensus       256 Wf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~-------~P~VY~~P  328 (466)
T PHA03270        256 WFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATG-------APTVLPRP  328 (466)
T ss_pred             EEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccc-------cCccccCC
Confidence            99999987532221 111111222   234444333221 1127899986554432 22222221       12344555


Q ss_pred             eEeccCCceeeCCCCeEEEEEEEEccCC-CeEEEEECCEEecc
Q psy16852        213 TIVRPLQALLVPKDSTVTLEAEYTGTPT-PEVKWFKNGKEIVS  254 (579)
Q Consensus       213 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~i~~  254 (579)
                      .+..     .+..|.   ..|.+.--|. ..+.|+.++.....
T Consensus       329 ~Isv-----~F~dG~---AVCtA~CVPegV~l~W~V~D~~~pa  363 (466)
T PHA03270        329 TIEM-----EFGGDE---AVCTAACVPEGVTLAWLLGADPAPA  363 (466)
T ss_pred             eEEE-----EEeCCE---EEEeccccCCCCEEEEEecCCCCCC
Confidence            5442     233333   3455544333 38999887755433

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.26  E-value=1.8e-05  Score=60.03  Aligned_cols=38  Identities=16%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ....|.|.+++.+|+|.|+|.+..........++|+|.
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            46789999999999999999999977778888888875

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.25  E-value=5.9e-06  Score=60.81  Aligned_cols=74  Identities=16%  Similarity=0.208  Sum_probs=49.3

Q ss_pred             eEEccCCcEEEEEEEEe-ecCCe--EEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        115 VIAEAQSPATLKATVTG-RPTPS--ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       115 ~~~~~g~~~~l~C~~~~-~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      ..+.+|+.++|.|.+.+ .|.+.  |.||+++..+.................+|.+...+.+|.-.|+|+|.+..+.
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            34578999999999965 66665  7999999988543211111112223457777666555666999999876543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.24  E-value=6.5e-06  Score=60.94  Aligned_cols=75  Identities=23%  Similarity=0.384  Sum_probs=46.8

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEee-CCC-eeEEEECCEEecCCCCE-EEEEeCC-----EEEEEEcCCCCCCCEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGH-PLP-TMTWQKDGTELHATEHY-LITTVES-----VSTLEIINPTKEDIGVY   77 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~-~v~W~~~g~~~~~~~~~-~~~~~~~-----~~~L~i~~~~~~d~G~Y   77 (579)
                      ||.+...+....   |+.++|.|.+.|. |.. .++|+++|..+...... .....++     .+.|.|.   .+|.+.|
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~---~~~~~~y   75 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVP---PEDKARY   75 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEEC---CCCCCEE
Confidence            676666555443   7899999999995 543 89999999643322111 1111111     1334443   4488999


Q ss_pred             EEEEEcCCe
Q psy16852         78 TCKATNIGG   86 (579)
Q Consensus        78 ~C~~~~~~g   86 (579)
                      +|++.+...
T Consensus        76 tC~V~H~~~   84 (93)
T cd07698          76 SCRVEHSGL   84 (93)
T ss_pred             EEEEEeCCC
Confidence            999987643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.24  E-value=6.2e-06  Score=62.53  Aligned_cols=86  Identities=17%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             eecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEE-E-eecceeeeeeeCC
Q psy16852        419 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV-K-ASSTETKIMTDGN  496 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c-~-~~~~~~~~~~~~~  496 (579)
                      +.+|+.++|.|.+.......+.|++....-  ......         .+.+...    .+...+ . ....++.+..+..
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~--~~~~~~---------l~~~~~~----~~~~~~~~~~~~~rf~~~~~~~   67 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGS--APQPTF---------LVYLSGS----SKITWDEEELSSKRFSGSRSSN   67 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCC--CCCCEE---------EEEEeCC----CCeeeccccCCCceEEEEecCC
Confidence            678999999999865545579999954110  011110         0111110    000000 0 0122333444557


Q ss_pred             eeEEEEeecccccceeEEEEEEe
Q psy16852        497 RSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ...|+|.+++.+|+|.|.|.+.+
T Consensus        68 ~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          68 SFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             EEEEEECCCCHHHCEEEEEEEcc
Confidence            77899999999999999998864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.23  E-value=7.8e-06  Score=58.62  Aligned_cols=63  Identities=21%  Similarity=0.343  Sum_probs=43.7

Q ss_pred             EEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         24 ALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        24 ~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      ++|+|.+.| +|.+.++|+|||..+............     ..+.|.+..-..+|...|+|+|.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            689999977 577899999999997543322111111     135677766667778899999987643

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.22  E-value=9.4e-06  Score=60.77  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=51.0

Q ss_pred             eeecCCCeEEEEEEEe-eCC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        418 IAEAQSPATLKATVTG-RPT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      ....++.++|.|.+.| +|. ..|.|+++|..+..+..               .........|.|+....          
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~---------------~~~~~~~~dgty~~~s~----------   67 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQ---------------TSTTEQQSDNTYSLSSY----------   67 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEe---------------ccccEECCCCCEEEEEE----------
Confidence            3446788999999998 453 38999999998843210               11122233566655433          


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                          |.+..-..++...|+|.+.....
T Consensus        68 ----L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          68 ----LTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             ----EEEcHHHhCCCCeEEEEEEecCC
Confidence                77777776677899999987644

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.22  E-value=1e-05  Score=63.08  Aligned_cols=74  Identities=19%  Similarity=0.266  Sum_probs=52.3

Q ss_pred             CCCceEEccCCcEEEEEEEEee-cCCeEEEEECCE--E---cc---------CCCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852        111 PLKPVIAEAQSPATLKATVTGR-PTPSICWYRGKE--E---IL---------PDNGHTMEFNPTTGECVLSISEATPQDE  175 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~--~---~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (579)
                      .+..+.+.+|++++|.|.+... ....+.||+...  .   +.         ...++.+..+...+..+|.|.+++.+|+
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   84 (116)
T cd07706           5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS   84 (116)
T ss_pred             eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence            3456778899999999998643 456899998421  1   10         1123333333445678999999999999


Q ss_pred             eEEEEEEEc
Q psy16852        176 AVYSVKAVN  184 (579)
Q Consensus       176 G~Y~C~~~~  184 (579)
                      |.|.|.+..
T Consensus        85 g~Y~C~~~~   93 (116)
T cd07706          85 AKYFCALST   93 (116)
T ss_pred             EEEEEEEEC
Confidence            999999975

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.21  E-value=8.3e-06  Score=61.37  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=51.7

Q ss_pred             eEEccCCcEEEEEEEEe-ecCCeEEEEECCEE-----c--------cCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEE
Q psy16852        115 VIAEAQSPATLKATVTG-RPTPSICWYRGKEE-----I--------LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV  180 (579)
Q Consensus       115 ~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~-----~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  180 (579)
                      +.+.+|++++|.|.... .....+.||+....     +        ....+..+..+...+...|.|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            35678999999999754 34568999986421     1        0112334433455677899999999999999999


Q ss_pred             EEEcCC
Q psy16852        181 KAVNTF  186 (579)
Q Consensus       181 ~~~~~~  186 (579)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            987653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.20  E-value=1.2e-05  Score=61.47  Aligned_cols=88  Identities=19%  Similarity=0.327  Sum_probs=50.1

Q ss_pred             eeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee--ee
Q psy16852        418 IAEAQSPATLKATVTGRP-TPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI--MT  493 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~--~~  493 (579)
                      .+.+|++++|.|.+.+.. ...+.|++....-.+ ...+.+..           .   ..+.-.|.-...+.++.+  ..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~-----------~---~~~~~~~~~~~~~~rf~~~~~~   67 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALW-----------S---PLGGATYGEEVSQEKFSIRVTS   67 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEE-----------c---CCCCeEEccccccCcEEEEEEC
Confidence            477899999999987643 448999995321100 00111110           0   000011111111222322  33


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      +.....|+|.+++.+|+|.|.|...+
T Consensus        68 ~~~~~~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          68 DSSRYRLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             CCCEEEEEECCCCHHHCEEEEEeEcC
Confidence            45567899999999999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.20  E-value=2.3e-05  Score=55.28  Aligned_cols=69  Identities=23%  Similarity=0.393  Sum_probs=44.9

Q ss_pred             CeEEEEEEEee-CC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        424 PATLKATVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       424 ~~~l~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      .++|.|.+.|+ |+ ..+.|+++|.++..+..               ...+.+...|.|+..              +.|.
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~---------------~~~~~~~~~gt~~~~--------------s~L~   51 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVS---------------TTDPLKNSDGTYFLS--------------SYLT   51 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEE---------------ECceEECCCCCEEEE--------------EEEE
Confidence            36899999985 55 48999999987532210               111222344555433              3377


Q ss_pred             EeecccccceeEEEEEEeCC
Q psy16852        502 ISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      +.....++...|+|.|.+..
T Consensus        52 v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407       52 VSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             EccccCCCCCEEEEEEEEcC
Confidence            76667777889999997753

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.16  E-value=0.0034  Score=57.86  Aligned_cols=167  Identities=13%  Similarity=0.175  Sum_probs=94.7

Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCC
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPT  240 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~  240 (579)
                      ...|.|..++...+|.|+=...+..+.......++|.         .+.+|.+...+.  .+.+|+.+.-.|.+.. +|+
T Consensus       181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~---------~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp  249 (466)
T PHA03270        181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVR---------MFRRPSLSIRPH--AVLEGEPFGATCVAANYYPG  249 (466)
T ss_pred             cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEE---------EecCCcccccCC--ccccCCCceEEEEeeeecCC
Confidence            3569999999999999999877766544433444443         224555443332  3678999999999876 454


Q ss_pred             C--eEEEEECCEEeccCc-eE----Ee----CCeEEEEEcccCCC-CCeEEEEEEEcCCee---eEEEEEEEEEecccee
Q psy16852        241 P--EVKWFKNGKEIVSKD-IE----TK----DNVTKLVIKQTTKK-TTGKYEIRVVNEAGE---ARTSGSVTITVAEAET  305 (579)
Q Consensus       241 ~--~v~W~~~~~~i~~~~-~~----~~----~~~~~l~i~~~~~~-d~G~y~C~a~n~~g~---~~~~~~~~v~~~~~~~  305 (579)
                      .  .++|+.||.++.... ..    ..    ...+++++...... ..=..+|.+.-....   ...+....-.+...+.
T Consensus       250 ~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~  329 (466)
T PHA03270        250 DRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPT  329 (466)
T ss_pred             CceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCe
Confidence            4  799999999885422 11    11    12233443332211 123689998532222   2223333333444444


Q ss_pred             eeeeeeeeccccCceeeeecCeeEEEeeeCC-CeEEEEECCEEccCC
Q psy16852        306 VMMDVRVESHPTASFQWFIHSEPVVVTGKPT-PLVTWSHDGTPMKEG  351 (579)
Q Consensus       306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~i~W~~~~~~~~~~  351 (579)
                      +.+...            ....-|.+..-|. ..+.|.-++......
T Consensus       330 Isv~F~------------dG~AVCtA~CVPegV~l~W~V~D~~~pa~  364 (466)
T PHA03270        330 IEMEFG------------GDEAVCTAACVPEGVTLAWLLGADPAPAE  364 (466)
T ss_pred             EEEEEe------------CCEEEEeccccCCCCEEEEEecCCCCCCc
Confidence            443321            1112355555554 478998777665443

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.14  E-value=2.6e-05  Score=63.23  Aligned_cols=86  Identities=12%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             ceEEccCCcEEEEEEEE-eecCCeEEEEECCEEcc----------CCCCceEE-EcCCCCeEEEEECcCCCCCCeEEEEE
Q psy16852        114 PVIAEAQSPATLKATVT-GRPTPSICWYRGKEEIL----------PDNGHTME-FNPTTGECVLSISEATPQDEAVYSVK  181 (579)
Q Consensus       114 ~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~----------~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~  181 (579)
                      .+.+.+|++++|.|... +...+++.|+|.++.+.          .+...++. .........|.|.+++.+|+|.|+|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            45678999999999974 55568999999643221          11112333 23334457899999999999999999


Q ss_pred             EEc-CCc-eeEEEEEEEEee
Q psy16852        182 AVN-TFG-RAECRANLVLRK  199 (579)
Q Consensus       182 ~~~-~~~-~~~~~~~~~v~~  199 (579)
                      ... +.| .......+.|..
T Consensus       104 F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEecCCCCCceeEEEEEEEc
Confidence            853 345 556666676653

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.10  E-value=3.9e-05  Score=56.43  Aligned_cols=73  Identities=18%  Similarity=0.301  Sum_probs=46.4

Q ss_pred             CCEEEEEEEEee-CCCeeEEEECCE----Ee-----------cCCCCEEEEEe---CCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852         22 QPALFTCKVEGH-PLPTMTWQKDGT----EL-----------HATEHYLITTV---ESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        22 ~~~~l~C~~~~~-~~~~v~W~~~g~----~~-----------~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +.++|.|..... ...++.|.|...    .+           ......++...   ....+|+|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            578999998532 234789988421    11           11111122222   235899999999999999999996


Q ss_pred             c-CCeeeEEEEEE
Q psy16852         83 N-IGGVATCSANL   94 (579)
Q Consensus        83 ~-~~g~~~~~~~~   94 (579)
                      . ..|.....+.+
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            5 35666655443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.10  E-value=3.4e-05  Score=54.13  Aligned_cols=75  Identities=12%  Similarity=0.160  Sum_probs=48.5

Q ss_pred             eeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        418 IAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      .+..|++++|+|.....+.|  +++|+-.+.......                                         ..
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~-----------------------------------------~~   48 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL-----------------------------------------NQ   48 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec-----------------------------------------cC
Confidence            46789999999999654444  999987654321100                                         01


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ...+|.+..+...|+|..+|.++-..-+....+.|.|.
T Consensus        49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl   86 (88)
T cd07694          49 DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL   86 (88)
T ss_pred             CccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence            12237777777777888888886544455556666553

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.10  E-value=2.5e-05  Score=58.56  Aligned_cols=77  Identities=18%  Similarity=0.175  Sum_probs=47.8

Q ss_pred             eecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCC-CceeEEEEeecceeeeeeeC
Q psy16852        419 AEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ-DEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~c~~~~~~~~~~~~~  495 (579)
                      +..|+.++|.|.+.|+.+.  .+.|+++|..+.......             ....... ..|.|+....          
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~-------------~~~~~~~~~dgTy~~~s~----------   69 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVT-------------TAPMQEPGGNESYFLYSK----------   69 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccc-------------cCcccccCCCCeEEEEEE----------
Confidence            4457889999999995443  789999999875432111             0011111 1366654433          


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                          |.+..-...+...|+|.+.....
T Consensus        70 ----L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          70 ----LTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             ----EEEcHHHhcCCCcEEEEeEeCCC
Confidence                77755555566789999987643

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.10  E-value=0.0025  Score=58.18  Aligned_cols=174  Identities=15%  Similarity=0.146  Sum_probs=96.1

Q ss_pred             EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEE
Q psy16852        154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA  233 (579)
Q Consensus       154 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C  233 (579)
                      +..........|.|.++...++|.|+-...+..........+.+...        +.+|.+...+.  .+.+|++..-.|
T Consensus       198 i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~--------~RPPsVsV~a~--PVL~Ge~YkAtC  267 (490)
T PHA03271        198 IWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC--------QRPASVDVLAP--PVLSGENYKASC  267 (490)
T ss_pred             EeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEE--------ecCCCccccCC--ccccCCCceEEE
Confidence            33334445578999999999999876666655444433333333322        23444433322  366899999999


Q ss_pred             EEEc-cCCC--eEEEEECCEEeccCce---E---Ee-----CCeEEEEEcccCCCCCeEEEEEEEcCCeee--EEEEEEE
Q psy16852        234 EYTG-TPTP--EVKWFKNGKEIVSKDI---E---TK-----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEA--RTSGSVT  297 (579)
Q Consensus       234 ~~~~-~p~~--~v~W~~~~~~i~~~~~---~---~~-----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~--~~~~~~~  297 (579)
                      .+.. +|+.  .++|+.||.++.....   .   ..     ...+++.+.+...+..=..+|.+.-..+..  ..++...
T Consensus       268 ~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaat  347 (490)
T PHA03271        268 IVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAI  347 (490)
T ss_pred             EeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccC
Confidence            9886 4544  7999999988755431   0   00     112344444433333447899996333222  2233333


Q ss_pred             EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC-CeEEEEECCEEcc
Q psy16852        298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT-PLVTWSHDGTPMK  349 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~i~W~~~~~~~~  349 (579)
                      ..+...+.+.+..            .....-|.+..-|. ..+.|.-++.+..
T Consensus       348 P~VY~~P~ISv~F------------edG~AVCtA~CVP~gV~lrWlVgD~p~p  388 (490)
T PHA03271        348 PTVYHHPRISLAF------------KDGYAICTIECVPSGITVRWLVHDEPQP  388 (490)
T ss_pred             CccccCCeEEEEE------------eCCEEEEeccccCCCcEEEEEecCCCCC
Confidence            3344444444322            11122355555543 4789987776543

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.09  E-value=3.1e-05  Score=57.23  Aligned_cols=77  Identities=21%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             eeeecCCCeEEEEEEEee--CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        417 VIAEAQSPATLKATVTGR--PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~--p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ..+..|+.++|+|.+.|+  |.. .++|++++......                ......+...|.|.....        
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~----------------~~~~~~~~~dgty~~~s~--------   64 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKA----------------SIQPPESHNNATLSVTST--------   64 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeE----------------EecccccCCCCCEEEEEE--------
Confidence            346668999999999998  443 88999987533110                011223445566655544        


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                            |.+..-+.++.-.|+|.+......
T Consensus        65 ------l~v~~~~w~~g~~ysC~V~H~~l~   88 (96)
T cd07696          65 ------LNVSTDDWISGDTFQCKVTHPDLP   88 (96)
T ss_pred             ------EEeCHHHccCCCcEEEEEECCCCC
Confidence                  777766655566899999876543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.09  E-value=1.5e-05  Score=59.01  Aligned_cols=62  Identities=16%  Similarity=0.164  Sum_probs=45.8

Q ss_pred             eeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEE
Q psy16852        222 LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVV  284 (579)
Q Consensus       222 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~  284 (579)
                      .+..|++++|.|.... ....+.|+|+|.......   .........+.|..++.+|+|.|+|...
T Consensus        11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            4778999999998754 455899999886532211   0112335678999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.08  E-value=1.5e-05  Score=59.62  Aligned_cols=80  Identities=21%  Similarity=0.359  Sum_probs=50.9

Q ss_pred             CCccccc-cCceeeeCCCCEEEEEEEEee-C-CCeeEEEECCEEecCCCCEE-EEEe-CC----EEEEEEcCCCCCCCEE
Q psy16852          6 APRFIEK-IQPVVSHQEQPALFTCKVEGH-P-LPTMTWQKDGTELHATEHYL-ITTV-ES----VSTLEIINPTKEDIGV   76 (579)
Q Consensus         6 ~p~~~~~-p~~~~v~~G~~~~l~C~~~~~-~-~~~v~W~~~g~~~~~~~~~~-~~~~-~~----~~~L~i~~~~~~d~G~   76 (579)
                      ||.+... |......+++.++|.|.+.|. | ...++|++||..+..+.... .... ++    .+.|.+..-..++...
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~   80 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV   80 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence            4554443 444556678999999999884 4 35899999999885321110 0111 11    2456665555556789


Q ss_pred             EEEEEEcCC
Q psy16852         77 YTCKATNIG   85 (579)
Q Consensus        77 Y~C~~~~~~   85 (579)
                      |+|++.+..
T Consensus        81 ~sC~V~H~~   89 (100)
T cd07699          81 YTCEVTHEG   89 (100)
T ss_pred             EEEEEEecC
Confidence            999998764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.08  E-value=5.8e-05  Score=57.41  Aligned_cols=70  Identities=30%  Similarity=0.446  Sum_probs=45.4

Q ss_pred             ceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEEEEeCC------EEEEEEcCCCCCCCE-EEEEEEEcCC
Q psy16852         15 PVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLITTVES------VSTLEIINPTKEDIG-VYTCKATNIG   85 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~d~G-~Y~C~~~~~~   85 (579)
                      ......|+.++|.|.+.+. |. ..++|+|||+.+..... .....++      .+.|.+.. ...|.| .|+|++.+..
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            3445678999999999874 53 58999999999864321 1111111      24455554 444444 5999999865


Q ss_pred             e
Q psy16852         86 G   86 (579)
Q Consensus        86 g   86 (579)
                      .
T Consensus        93 l   93 (111)
T cd05772          93 L   93 (111)
T ss_pred             C
Confidence            3

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.08  E-value=5.1e-05  Score=55.79  Aligned_cols=75  Identities=13%  Similarity=0.206  Sum_probs=46.9

Q ss_pred             cCCCeEEEEEEEe-eCC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTG-RPT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .++.++|.|.+.| +|. ..|.|+++|..+.....              .-...... .|.|...              +
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~--------------~s~~~~~~-~~Ty~~~--------------S   63 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAA--------------STAPQKEE-GSTFSTT--------------S   63 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCcee--------------ecccEECC-CCcEEEE--------------E
Confidence            4567999999998 455 38999999988632210              00111112 2355433              3


Q ss_pred             EEEEeecccccceeEEEEEEeCCeeE
Q psy16852        499 VLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                      .|.+..-...+...|+|.+.+.....
T Consensus        64 ~L~v~~~~w~~~~~ytC~V~H~~~~~   89 (94)
T cd05847          64 ELNVTQEDWKSGKTYTCKVTHQGTTF   89 (94)
T ss_pred             EEEEchHHhcCCCeEEEEEEECCeee
Confidence            37777666666788999998875543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.07  E-value=0.00062  Score=63.35  Aligned_cols=203  Identities=15%  Similarity=0.126  Sum_probs=108.1

Q ss_pred             CCeEEEEECcCCCCCCeEEEEEEEcC-CceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-
Q psy16852        160 TGECVLSISEATPQDEAVYSVKAVNT-FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-  237 (579)
Q Consensus       160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-  237 (579)
                      .+...|.|..++..++|.|+=++.+. .+.......++|.         ...+|.+...+.  .+.+|+.+.-.|.+.. 
T Consensus       286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~---------~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~Y  354 (566)
T PHA03269        286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVM---------SYKRPNITVIGD--PVLLGNPYAAYCKVNKY  354 (566)
T ss_pred             CCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEE---------EecCCCccccCC--ccccCCCceEEEEeeee
Confidence            34567999999999999998665432 2333333444443         224554433332  3678999999999886 


Q ss_pred             cCCC--eEEEEECCEEeccCc----eEE-----eCCeEEEEEcccCCCC--CeEEEEEEEcCCeee-EE--EEEEEEEec
Q psy16852        238 TPTP--EVKWFKNGKEIVSKD----IET-----KDNVTKLVIKQTTKKT--TGKYEIRVVNEAGEA-RT--SGSVTITVA  301 (579)
Q Consensus       238 ~p~~--~v~W~~~~~~i~~~~----~~~-----~~~~~~l~i~~~~~~d--~G~y~C~a~n~~g~~-~~--~~~~~v~~~  301 (579)
                      +|+.  .++|++||.++....    ...     ....++|++......|  .-..+|.+.-..+.. ..  +....-.|.
T Consensus       355 YPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY  434 (566)
T PHA03269        355 YPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVY  434 (566)
T ss_pred             cCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccc
Confidence            4544  789999998887432    111     1122444443221111  345699985322222 11  233333344


Q ss_pred             cceeeeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECCEEccCCCeEEEEECCCCeEEEEEcc---cCCCC-
Q psy16852        302 EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISE---VFPEN-  375 (579)
Q Consensus       302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~d-  375 (579)
                      ..+.+.+..            .....-|.+..-|.  ..+.|.-++...........-.-.+......+..   +...| 
T Consensus       435 ~~PtISm~F------------edG~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dg  502 (566)
T PHA03269        435 PFPNVSIEI------------IDGHIVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDG  502 (566)
T ss_pred             cCCeEEEEE------------eCCEEEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCC
Confidence            444444332            11222366666665  3799988776643332211110011111344444   33333 


Q ss_pred             CEEEEEEEEc
Q psy16852        376 AGLYSCTAVN  385 (579)
Q Consensus       376 ~G~Y~C~a~n  385 (579)
                      --.|+|.+..
T Consensus       503 pveYTCrL~G  512 (566)
T PHA03269        503 PITYSCHLDG  512 (566)
T ss_pred             ceeEEEEEee
Confidence            2479999853

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.06  E-value=0.00059  Score=63.29  Aligned_cols=167  Identities=17%  Similarity=0.135  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC--CeEE
Q psy16852         62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT--PSIC  138 (579)
Q Consensus        62 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~i~  138 (579)
                      ..|.|..++..++|.|+=+..+..+.......+.|..-    .+|.+...+.  -+.+|+...-.|.+..+ |+  ..+.
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y----r~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~r  271 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY----NAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLR  271 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe----cCCcccccCC--ccccCCCceEEEEeeeecCCCceEEE
Confidence            55999999999999998776565555555555555321    2444444333  35689999999998654 43  5999


Q ss_pred             EEECCEEccCCCC--ceEEEcCC---CCeEEEEECcCCC-CCCeEEEEEEEcCCceeEEEE-EEEEeeccccCCCCccCC
Q psy16852        139 WYRGKEEILPDNG--HTMEFNPT---TGECVLSISEATP-QDEAVYSVKAVNTFGRAECRA-NLVLRKATTIDKPRVLEA  211 (579)
Q Consensus       139 W~~~~~~~~~~~~--~~~~~~~~---~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~  211 (579)
                      ||.++.++.....  ........   ...++|.+..... +..=..+|.+.-..+....+. .-..       .+.++.+
T Consensus       272 Wf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~-------~P~Vy~~  344 (486)
T PHA03273        272 WYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAG-------TPSVFVA  344 (486)
T ss_pred             EEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccc-------cCccccC
Confidence            9999998873222  11221111   1234555555322 333488999875544322211 1111       1234455


Q ss_pred             CeEeccCCceeeCCCCeEEEEEEEEccCC--CeEEEEECC
Q psy16852        212 PTIVRPLQALLVPKDSTVTLEAEYTGTPT--PEVKWFKNG  249 (579)
Q Consensus       212 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~  249 (579)
                      |.+..     .+..|   ...|.+.--|.  ..+.|+.++
T Consensus       345 P~Is~-----~F~~G---~AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        345 PTVSV-----TVEDG---DAVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             CeEEE-----EEeCC---EEEEecccccCCCeeEEEEccC
Confidence            55442     23233   34566665554  589998876

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.06  E-value=3.9e-05  Score=56.50  Aligned_cols=72  Identities=26%  Similarity=0.499  Sum_probs=46.9

Q ss_pred             CCCeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852        422 QSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL  500 (579)
Q Consensus       422 g~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l  500 (579)
                      |+.+.|+|.+. |+|+|.+.|+.++..+..                .........+.|.|..              .+.|
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~S~l   63 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVA----------------SNTTQSSSPDNGLFTV--------------SSTL   63 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECE----------------EEEEEEEETTTTTEEE--------------EEEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceee----------------eeeeeeeccCCCcceE--------------EEEE
Confidence            67999999765 689999999999877611                1111122233333322              2447


Q ss_pred             EEeecccccceeEEEEEEeCCee
Q psy16852        501 LISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       501 ~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      .+..-..++...++|.|.|..-.
T Consensus        64 ~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   64 TLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             EEETTGGGTTEEEEEEEEETTCC
T ss_pred             EEEcChHHCCeEEEEEEECCccC
Confidence            77766667788999999987544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.05  E-value=3.9e-05  Score=56.49  Aligned_cols=66  Identities=24%  Similarity=0.408  Sum_probs=44.0

Q ss_pred             CCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCEEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         21 EQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        21 G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      |+.+.|+|.+ .++|.+.++|+.++..+............     ..+.|.+..-..++...++|+|.+..-
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            8899999987 45788999999999877111111111111     125677776666678899999988653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.04  E-value=0.00012  Score=55.76  Aligned_cols=76  Identities=16%  Similarity=0.339  Sum_probs=47.5

Q ss_pred             eeecCCCeEEEEEEEee-CC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        418 IAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      ....|+.++|.|.+.|+ |. ..++|++||..+..... ..             .  ...|.|.|....           
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~-------------~--p~~d~~ty~~~S-----------   69 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NI-------------T--PEGDSVSYNVTS-----------   69 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ce-------------e--eCCCCCcEEEEE-----------
Confidence            34568889999999984 54 49999999999853211 10             0  012335665433           


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                         .|.+..-..++.-.|+|.+.+....
T Consensus        70 ---~L~~~~~~~d~~~~ytC~V~H~~l~   94 (111)
T cd05772          70 ---TVQVKLTEDDVHSQVTCEVQHRTLQ   94 (111)
T ss_pred             ---EEEEECccccccCceEEEEEeCCCC
Confidence               3766654444334599999987543

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.02  E-value=5.3e-05  Score=55.59  Aligned_cols=76  Identities=20%  Similarity=0.333  Sum_probs=45.6

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEE-EEEeCC-----EEEEEEcCCCCCCCEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYL-ITTVES-----VSTLEIINPTKEDIGVY   77 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~-~~~~~~-----~~~L~i~~~~~~d~G~Y   77 (579)
                      ||.+..-+.. ....|+..+|.|.+.|+ |. ..++|.+||..+..+.... ....++     .+.|.+.   .++...|
T Consensus         1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~y   76 (94)
T cd05767           1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIY   76 (94)
T ss_pred             CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeE
Confidence            4444433332 13457778999999984 53 4799999999876432111 111111     2345444   3456699


Q ss_pred             EEEEEcCC
Q psy16852         78 TCKATNIG   85 (579)
Q Consensus        78 ~C~~~~~~   85 (579)
                      +|++.+..
T Consensus        77 tC~V~H~~   84 (94)
T cd05767          77 SCIVEHWG   84 (94)
T ss_pred             EEEEEeCC
Confidence            99998754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.01  E-value=6.3e-05  Score=53.00  Aligned_cols=63  Identities=30%  Similarity=0.459  Sum_probs=41.9

Q ss_pred             CEEEEEEEEee-CC-CeeEEEECCEEecCCCCEE-EEEe-CC----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852         23 PALFTCKVEGH-PL-PTMTWQKDGTELHATEHYL-ITTV-ES----VSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        23 ~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~-~~~~-~~----~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      .++|.|.+.|. |. ..++|+|||+.+..+.... .... ++    .+.|.|.....++...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            47899999886 44 5899999999754321110 1111 11    3567777667778889999998753

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.01  E-value=4.6e-05  Score=59.13  Aligned_cols=89  Identities=15%  Similarity=0.227  Sum_probs=50.1

Q ss_pred             CceeeecCCCeEEEEEEEeeC--CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRP--TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      ....+.+|++++|.|...+..  ...+.|++...    +....+         .+.+......   .+......+++.+.
T Consensus         5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~----g~~p~~---------l~~~~~~~~~---~~~~~~~~~rf~~~   68 (117)
T cd04981           5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAP----GKGLEW---------IGFINPGGGE---TYYADSVKGRFTIT   68 (117)
T ss_pred             CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECC----CCCcEE---------EEEEecCCCc---eEeCcccCCcEEEE
Confidence            345688999999999986433  45799999431    111110         0111110000   00000111233343


Q ss_pred             eeC--CeeEEEEeecccccceeEEEEEEe
Q psy16852        493 TDG--NRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       493 ~~~--~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .+.  ....|+|.+++.+|+|.|.|.+..
T Consensus        69 ~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          69 RDTSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             EEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            333  345799999999999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.00  E-value=6.7e-05  Score=55.21  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=28.7

Q ss_pred             CeeEEEEeecccccceeEEEEEEeC-CeeEEEEEEEE
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENV-AGSVTCTATLS  531 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l~  531 (579)
                      ..+.|+|.+++.+|+|.|+|.+..- .|..++.+.|.
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~   94 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV   94 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence            4577999999999999999998654 77776666553

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.00  E-value=0.00068  Score=62.92  Aligned_cols=160  Identities=18%  Similarity=0.192  Sum_probs=93.9

Q ss_pred             EEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC
Q psy16852        163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP  241 (579)
Q Consensus       163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~  241 (579)
                      ..|.|..++..++|.|+=...+..+.......+.|..         +.+|.+...+.  .+.+|+.+.-.|.+.. +|+.
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~---------yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~  266 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST---------YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHS  266 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE---------ecCCcccccCC--ccccCCCceEEEEeeeecCCC
Confidence            5699999999999999877656555444444444431         24555443332  3678999999999876 4544


Q ss_pred             --eEEEEECCEEecc-Cc----eE-----EeCCeEEEEEcccCC-CCCeEEEEEEEcCCee-eEE--EEEEEEEecccee
Q psy16852        242 --EVKWFKNGKEIVS-KD----IE-----TKDNVTKLVIKQTTK-KTTGKYEIRVVNEAGE-ART--SGSVTITVAEAET  305 (579)
Q Consensus       242 --~v~W~~~~~~i~~-~~----~~-----~~~~~~~l~i~~~~~-~d~G~y~C~a~n~~g~-~~~--~~~~~v~~~~~~~  305 (579)
                        .+.|+.||.++.. ..    ..     .....++|++..... +..=..+|.+.-.... ...  +......+...+.
T Consensus       267 Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~  346 (486)
T PHA03273        267 SVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPT  346 (486)
T ss_pred             ceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCe
Confidence              7999999999872 22    11     112234455544322 3344789998532222 211  2333333444444


Q ss_pred             eeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECC
Q psy16852        306 VMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDG  345 (579)
Q Consensus       306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~  345 (579)
                      +.+...            ....-|.+..-|.  ..+.|.-++
T Consensus       347 Is~~F~------------~G~AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        347 VSVTVE------------DGDAVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             EEEEEe------------CCEEEEecccccCCCeeEEEEccC
Confidence            444321            1222366666666  589998766

>cd00096 Ig Immunoglobulin domain

Probab=98.00  E-value=3e-05  Score=54.34  Aligned_cols=62  Identities=42%  Similarity=0.598  Sum_probs=46.5

Q ss_pred             EEEEEEEEeeCCCeeEEEECCEEecCCCCE----EEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852         24 ALFTCKVEGHPLPTMTWQKDGTELHATEHY----LITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        24 ~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      +.|.|.+.+.+...+.|++++.........    ..........|.|.+++.+|+|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            478999988667789999988776543321    11222345789999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.00  E-value=7.5e-05  Score=56.98  Aligned_cols=85  Identities=20%  Similarity=0.233  Sum_probs=54.1

Q ss_pred             CceeeecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      ....+..++.++|.|.+.|+ |.. +|.|++||..+..+....             .......| |.|.....       
T Consensus        11 s~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~-------------~~~~~~~~-gTYs~~S~-------   69 (115)
T cd05769          11 SEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATD-------------PQALRENT-STYSISSR-------   69 (115)
T ss_pred             ChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccc-------------cceecCCC-CeEEEEEE-------
Confidence            33334467789999999984 553 899999999885432100             01112222 67765544       


Q ss_pred             eeCCeeEEEEeeccccc-ceeEEEEEEeCCeeEEEE
Q psy16852        493 TDGNRSVLLISKITRDQ-IGDVTCRAENVAGSVTCT  527 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~  527 (579)
                             |.+...+..| ...|+|.+..........
T Consensus        70 -------L~v~~~~w~~~~~~ytC~V~H~g~~~~~~   98 (115)
T cd05769          70 -------LRVSATEWFNPRNTFTCIVQFYGGTDTDK   98 (115)
T ss_pred             -------EEEChHHhccCCCeEEEEEEEeCCcccee
Confidence                   8887776644 568999998875555433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.99  E-value=5e-05  Score=55.48  Aligned_cols=67  Identities=16%  Similarity=0.292  Sum_probs=42.4

Q ss_pred             eeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEc---CCCCCCCEEEEEEEEcCC
Q psy16852         18 SHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLITTVESVSTLEII---NPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        18 v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~---~~~~~d~G~Y~C~~~~~~   85 (579)
                      +..|+..+|.|.+.|. |. ..++|+|||..+. +..........+.++++.   .++..+...|+|++.+..
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            3457788999999985 43 4799999999886 322111111222222221   334667788999998753

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.98  E-value=0.00011  Score=57.38  Aligned_cols=90  Identities=16%  Similarity=0.140  Sum_probs=49.6

Q ss_pred             CceeeecCCCeEEEEEEEeeC------CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce
Q psy16852        415 KPVIAEAQSPATLKATVTGRP------TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE  488 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p------~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~  488 (579)
                      ..+.+.+|+.++|.|.....+      ...+.|++....-.  ....+.+. ...      ......-.|+|+...    
T Consensus         7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~--~~~~~~~~-~~~------~~~~~~f~gR~~~~~----   73 (119)
T cd05712           7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPK--NRPPVATN-NRS------RLVHESTRGRFRLLG----   73 (119)
T ss_pred             CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCC--CCCcEEEc-CCC------ccccccccccEEEec----
Confidence            445688999999999876221      23689999631100  00001000 000      001111122332110    


Q ss_pred             eeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        489 TKIMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       489 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                         ........|+|.+++.+|+|.|.|.+...
T Consensus        74 ---~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          74 ---DLGKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ---CCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence               12445677999999999999999998664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.98  E-value=7.2e-05  Score=55.36  Aligned_cols=27  Identities=30%  Similarity=0.559  Sum_probs=22.4

Q ss_pred             CCCeEEEEEEEee-CCC-eEEEeeCCEEc
Q psy16852        422 QSPATLKATVTGR-PTP-SICWYRGKEEI  448 (579)
Q Consensus       422 g~~~~l~C~~~g~-p~~-~v~W~~~~~~l  448 (579)
                      |+.++|.|.+.|+ |.. .++|+++|..+
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~   42 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDS   42 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEEC
Confidence            6789999999995 554 89999998643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.98  E-value=6e-05  Score=55.56  Aligned_cols=65  Identities=25%  Similarity=0.362  Sum_probs=42.3

Q ss_pred             eCCCCEEEEEEEEee-CCC-eeEEEECCEEecCCCCE-EEEEeCC-----EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         19 HQEQPALFTCKVEGH-PLP-TMTWQKDGTELHATEHY-LITTVES-----VSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        19 ~~G~~~~l~C~~~~~-~~~-~v~W~~~g~~~~~~~~~-~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      ..|+.++|.|.+.|. |.. .++|++||..+...... ....+++     .+.|.+.   ..+...|+|++.+...
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l   84 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSL   84 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCC
Confidence            468999999999885 443 79999999987654111 1111111     2344443   3466799999987654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.98  E-value=5.2e-05  Score=55.74  Aligned_cols=77  Identities=19%  Similarity=0.239  Sum_probs=47.2

Q ss_pred             cCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCE-EEEE-eCC----EEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852         13 IQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHY-LITT-VES----VSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~-~~~~-~~~----~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      |.......++.++|.|.+.|. |. ..++|++||..+...... .... .++    .+.|.+..-...+...|+|++.+.
T Consensus         6 ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~   85 (94)
T cd05847           6 SSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ   85 (94)
T ss_pred             cChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence            333333356779999999884 54 589999999986332111 0111 111    245666544445677999999987


Q ss_pred             CeeeE
Q psy16852         85 GGVAT   89 (579)
Q Consensus        85 ~g~~~   89 (579)
                      .....
T Consensus        86 ~~~~~   90 (94)
T cd05847          86 GTTFE   90 (94)
T ss_pred             Ceeee
Confidence            65433

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.96  E-value=3.6e-05  Score=57.72  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             ccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEE--EEe---CC----EEEEEEcCCCCCCCEEEEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLI--TTV---ES----VSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~--~~~---~~----~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      +|....+..|+.++|.|.+.|. |. ..++|++||..+........  ...   ++    .+.|.|..-...+...|+|+
T Consensus         7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~   86 (102)
T cd05768           7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCV   86 (102)
T ss_pred             CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEE
Confidence            3444556678999999999985 43 36899999998754321111  111   11    24455543333456689999


Q ss_pred             EEcCCe
Q psy16852         81 ATNIGG   86 (579)
Q Consensus        81 ~~~~~g   86 (579)
                      +.+...
T Consensus        87 V~H~~l   92 (102)
T cd05768          87 VGHEAL   92 (102)
T ss_pred             eEeCCC
Confidence            987543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.95  E-value=0.00011  Score=53.03  Aligned_cols=71  Identities=23%  Similarity=0.432  Sum_probs=47.3

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .++.++|.|.+.|+ |.. .|.|+++|..+........               ......|.|.....             
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~---------------~~~~~dgty~~~s~-------------   58 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTP---------------PPPNSDGTYSVTSS-------------   58 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEE---------------EEEETTSEEEEEEE-------------
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecc---------------cccccccceeeeEE-------------
Confidence            48899999999985 544 8999999998854321111               11124566654433             


Q ss_pred             EEEEeecccccceeEEEEEEeCCee
Q psy16852        499 VLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                       |.+.   ..+...|+|.+.+....
T Consensus        59 -l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen   59 -LTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             -EEEE---TTTTGGEEEEEEETTSS
T ss_pred             -EEec---CCCCCEEEEEEEECCCC
Confidence             6665   55566899999887554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.92  E-value=0.00024  Score=52.13  Aligned_cols=69  Identities=14%  Similarity=0.247  Sum_probs=43.5

Q ss_pred             cCCCeEEEEEEEe-eCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTG-RPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .|+..+|.|.+.| +|.. .++|+++|..+..+...               ..+.+...|.|.....             
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~---------------~~~~~~~Dgty~~~s~-------------   65 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSE---------------TRYYPRQDLSFQKFSY-------------   65 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEE---------------eeeEeCCCCcEEEEEE-------------
Confidence            4667899999999 4544 88999999987543111               1122333455544322             


Q ss_pred             EEEEeecccccceeEEEEEEeCC
Q psy16852        499 VLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                       |.+..   ++...|+|.+....
T Consensus        66 -L~v~~---~~~~~ytC~V~H~~   84 (94)
T cd05767          66 -LNFTP---EEGDIYSCIVEHWG   84 (94)
T ss_pred             -EEEEC---CCCCeEEEEEEeCC
Confidence             55543   45568999998763

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.90  E-value=0.00016  Score=52.81  Aligned_cols=30  Identities=30%  Similarity=0.376  Sum_probs=24.3

Q ss_pred             ecCCCeEEEEEEEee-CCC-eEEEeeCCEEcC
Q psy16852        420 EAQSPATLKATVTGR-PTP-SICWYRGKEEIL  449 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~  449 (579)
                      ..|+..+|.|.+.|+ |.. .++|++||..+.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~   44 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP   44 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence            356778999999995 443 889999999885

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.89  E-value=7.8e-05  Score=53.77  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             CCeeEEEEeecccccceeEEEEE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                      .....|.|.+++.+|+|.|.|.+
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       59 KNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEcC
Confidence            56788999999999999999963

>smart00406 IGv Immunoglobulin V-Type

Probab=97.89  E-value=6.5e-05  Score=54.20  Aligned_cols=59  Identities=24%  Similarity=0.425  Sum_probs=40.3

Q ss_pred             CEEEEEEEEeeCCC--eeEEEECCE-----Ee----------c---CCCCEEEEEe--CCEEEEEEcCCCCCCCEEEEEE
Q psy16852         23 PALFTCKVEGHPLP--TMTWQKDGT-----EL----------H---ATEHYLITTV--ESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus        23 ~~~l~C~~~~~~~~--~v~W~~~g~-----~~----------~---~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      +++|.|.+.....+  .+.||+...     .+          .   ...++.....  .+..+|+|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899998765443  799998431     01          0   1123333333  4568899999999999999996


Q ss_pred             E
Q psy16852         81 A   81 (579)
Q Consensus        81 ~   81 (579)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.88  E-value=0.013  Score=53.86  Aligned_cols=170  Identities=14%  Similarity=0.126  Sum_probs=93.9

Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEcCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC--C
Q psy16852         61 VSTLEIINPTKEDIGVYTCKATNIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT--P  135 (579)
Q Consensus        61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~  135 (579)
                      ...|.|.++...|+|.|+-...+.....  ...+.+.+...     +|.+...+.+  +.+|+...-.|.+..+ |+  .
T Consensus       206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~R-----PPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~Sv  278 (490)
T PHA03271        206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQR-----PASVDVLAPP--VLSGENYKASCIVRHFYPPGSV  278 (490)
T ss_pred             eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEec-----CCCccccCCc--cccCCCceEEEEeeeecCCCce
Confidence            4679999999999997755544433322  23344444432     4445443433  5689999999998654 44  5


Q ss_pred             eEEEEECCEEccCCCCceE---EEcCCCC---eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCcc
Q psy16852        136 SICWYRGKEEILPDNGHTM---EFNPTTG---ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVL  209 (579)
Q Consensus       136 ~i~W~~~~~~~~~~~~~~~---~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  209 (579)
                      .+.||.++..+........   ..+...+   .++|.+.+...+..=..+|.+.-..+....+..-.       ..+.++
T Consensus       279 rlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAa-------atP~VY  351 (490)
T PHA03271        279 YVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNAT-------AIPTVY  351 (490)
T ss_pred             EEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecc-------cCCccc
Confidence            9999999887654322111   1122111   23444444332333489999976555333332111       123345


Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccC-CCeEEEEECCEEe
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTP-TPEVKWFKNGKEI  252 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~i  252 (579)
                      .+|.+..     .+..|..   .|.+.--| ...+.|+.++.+.
T Consensus       352 ~~P~ISv-----~FedG~A---VCtA~CVP~gV~lrWlVgD~p~  387 (490)
T PHA03271        352 HHPRISL-----AFKDGYA---ICTIECVPSGITVRWLVHDEPQ  387 (490)
T ss_pred             cCCeEEE-----EEeCCEE---EEeccccCCCcEEEEEecCCCC
Confidence            5555442     2333433   35544333 3489998877554

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.87  E-value=9.5e-05  Score=54.62  Aligned_cols=75  Identities=20%  Similarity=0.223  Sum_probs=43.8

Q ss_pred             ccCceeeeCCCCEEEEEEEEee--CC-CeeEEEECCEEe-cCCCCEEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEc
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGH--PL-PTMTWQKDGTEL-HATEHYLITTVES----VSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~--~~-~~v~W~~~g~~~-~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +|....+..|+.++|+|.+.|.  |. ..++|.|||... ...........++    .+.|.+..-...+.-.|+|.+.+
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            3444557779999999999988  43 379999987433 2111000000011    13454544333345589999988


Q ss_pred             CCe
Q psy16852         84 IGG   86 (579)
Q Consensus        84 ~~g   86 (579)
                      ...
T Consensus        85 ~~l   87 (96)
T cd07696          85 PDL   87 (96)
T ss_pred             CCC
Confidence            643

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.85  E-value=0.00012  Score=54.71  Aligned_cols=72  Identities=17%  Similarity=0.274  Sum_probs=51.0

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCC---eeEEEEC--CE-E-----------e-cCCCCE--EEEEeCCEEEEEEcCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKD--GT-E-----------L-HATEHY--LITTVESVSTLEIINP   69 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~--g~-~-----------~-~~~~~~--~~~~~~~~~~L~i~~~   69 (579)
                      ..++....+..|+.++|.|++++....   .+.|+|.  |. +           . ....++  ......+..+|.|.++
T Consensus         2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L   81 (115)
T cd05721           2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL   81 (115)
T ss_pred             eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC
Confidence            456778889999999999999775433   5889882  21 0           1 011222  2233345789999999


Q ss_pred             CCCCCEEEEEEE
Q psy16852         70 TKEDIGVYTCKA   81 (579)
Q Consensus        70 ~~~d~G~Y~C~~   81 (579)
                      +.+|.+.|.|..
T Consensus        82 ~a~DTa~Y~Ca~   93 (115)
T cd05721          82 RANQTDIYFCKI   93 (115)
T ss_pred             CHHHCeEEEEEe
Confidence            999999999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.82  E-value=0.0046  Score=57.84  Aligned_cols=169  Identities=13%  Similarity=0.134  Sum_probs=93.2

Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEcC-CeeeE--EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC--
Q psy16852         61 VSTLEIINPTKEDIGVYTCKATNI-GGVAT--CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT--  134 (579)
Q Consensus        61 ~~~L~i~~~~~~d~G~Y~C~~~~~-~g~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--  134 (579)
                      ...|.|.+++..++|.|+=++.+. .+...  ..+++.++.      +|.+...+.  -+.+|+...-.|.+..+ |+  
T Consensus       288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr------~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~S  359 (566)
T PHA03269        288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYK------RPNITVIGD--PVLLGNPYAAYCKVNKYYPPHS  359 (566)
T ss_pred             ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEec------CCCccccCC--ccccCCCceEEEEeeeecCCCc
Confidence            456999999999999998665532 23333  334444443      344443333  35689999999998654 43  


Q ss_pred             CeEEEEECCEEccCCCC-ceEEEcCCC---CeEEEEECcCCCCC--CeEEEEEEEcCCceeEEE-EEEEEeeccccCCCC
Q psy16852        135 PSICWYRGKEEILPDNG-HTMEFNPTT---GECVLSISEATPQD--EAVYSVKAVNTFGRAECR-ANLVLRKATTIDKPR  207 (579)
Q Consensus       135 ~~i~W~~~~~~~~~~~~-~~~~~~~~~---~~~~l~i~~~~~~d--~G~Y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~  207 (579)
                      ..+.||.+++++..... ........+   ..++|.+......|  -=..+|.+.-..+....+ ..-..       .+.
T Consensus       360 vrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaa-------tP~  432 (566)
T PHA03269        360 VIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAV-------TPD  432 (566)
T ss_pred             eEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheeccccc-------CCc
Confidence            59999999988874221 111111111   12344443222122  236799986554432222 12221       123


Q ss_pred             ccCCCeEeccCCceeeCCCCeEEEEEEEEccCC--CeEEEEECCEEe
Q psy16852        208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT--PEVKWFKNGKEI  252 (579)
Q Consensus       208 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~i  252 (579)
                      ++.+|.+..     .+..|.   ..|.+.--|.  ..+.|+.++...
T Consensus       433 VY~~PtISm-----~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~  471 (566)
T PHA03269        433 VYPFPNVSI-----EIIDGH---IVCLAKCVPRGVVHFNWWINDIPI  471 (566)
T ss_pred             cccCCeEEE-----EEeCCE---EEEecccccCCCceEEEEecCCCC
Confidence            445555442     233333   3466554444  389998877553

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.80  E-value=0.00025  Score=52.30  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=25.6

Q ss_pred             ecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCC
Q psy16852        420 EAQSPATLKATVTGR-PTP-SICWYRGKEEILP  450 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~  450 (579)
                      ..|+.++|.|.+.|+ |.. .+.|+++|..+..
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~   44 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE   44 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence            468899999999984 554 8899999998754

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.76  E-value=0.00018  Score=54.87  Aligned_cols=85  Identities=20%  Similarity=0.287  Sum_probs=52.7

Q ss_pred             CCcccc-ccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCE-EEEEeC--C----EEEEEEcCCCCCC-C
Q psy16852          6 APRFIE-KIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHY-LITTVE--S----VSTLEIINPTKED-I   74 (579)
Q Consensus         6 ~p~~~~-~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~-~~~~~~--~----~~~L~i~~~~~~d-~   74 (579)
                      ||.+.. .|......+++.++|.|.+.+. |. ..++|++||..+..+... ......  +    .+.|.|......| .
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~   81 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR   81 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence            454444 3444556678899999999885 54 489999999987643211 011111  1    3456666554444 5


Q ss_pred             EEEEEEEEcCCeeeEE
Q psy16852         75 GVYTCKATNIGGVATC   90 (579)
Q Consensus        75 G~Y~C~~~~~~g~~~~   90 (579)
                      ..|+|.+.+.......
T Consensus        82 ~~ytC~V~H~g~~~~~   97 (115)
T cd05769          82 NTFTCIVQFYGGTDTD   97 (115)
T ss_pred             CeEEEEEEEeCCccce
Confidence            6899999886544443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.71  E-value=0.00015  Score=53.35  Aligned_cols=71  Identities=11%  Similarity=0.174  Sum_probs=41.9

Q ss_pred             cCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEE-EEEeCC----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852         13 IQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYL-ITTVES----VSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~-~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      |.......+..++|.|.+.+. |. ..++|.+||..+..+.... ....++    .+.|.|..-.  ....|+|.+.+..
T Consensus         8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697           8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            444445557889999999984 43 3789999999875432111 111122    1234333221  2345999998753

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd00096 Ig Immunoglobulin domain

Probab=97.70  E-value=0.00025  Score=49.42  Aligned_cols=64  Identities=25%  Similarity=0.432  Sum_probs=46.9

Q ss_pred             EEEEEEEEeecCCeEEEEECCEEccCCCCc--eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        123 ATLKATVTGRPTPSICWYRGKEEILPDNGH--TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       123 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      +.|.|.+.+.+...+.|++++.........  ............|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999987677899999988765443221  1112223445789999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.70  E-value=0.00069  Score=49.96  Aligned_cols=27  Identities=30%  Similarity=0.623  Sum_probs=22.2

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEE
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEE  447 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~  447 (579)
                      .++.++|.|.+.|+ |.. +|+|+++|..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            46679999999985 544 8899999987

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.69  E-value=0.00066  Score=50.01  Aligned_cols=76  Identities=11%  Similarity=0.170  Sum_probs=47.1

Q ss_pred             CCCeEEEEEE-EeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852        422 QSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL  500 (579)
Q Consensus       422 g~~~~l~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l  500 (579)
                      .....+.|.+ .|.|.+.|.|+++   +.......                ......|.|+.              .+.|
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~----------------~~~~~~g~~tv--------------~S~l   61 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETT---LGGEAETQ----------------SKENPNGTVTV--------------TSEY   61 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeC---CCCcceeE----------------eecCCCCCEEE--------------EEEE
Confidence            3456899998 5799999999997   11110000                01111233332              3458


Q ss_pred             EEeecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852        501 LISKITRDQIGDVTCRAENVAGSVTCTATL  530 (579)
Q Consensus       501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  530 (579)
                      .+.....+|...|+|+|.|..-.......+
T Consensus        62 ~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~   91 (95)
T cd05719          62 RLVPSREANGKELTCVVSHPTLQEPQRFSV   91 (95)
T ss_pred             EEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            888888888889999999986544433333

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.69  E-value=0.00033  Score=51.60  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=47.5

Q ss_pred             ccccCceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCEEEEEe-CC----EEEEEEcCCCCCCCEEEEEEEEc
Q psy16852         10 IEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTV-ES----VSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~~~~~~-~~----~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      ..++..+..-......+.|.+ .|.|.+.|+|+++..   .......... .+    .+.|.+.....+|...|+|++.+
T Consensus         4 ~~~~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h   80 (95)
T cd05719           4 SAEAGPVALGGEPVTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSH   80 (95)
T ss_pred             ccceeccccCCCccEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeC
Confidence            334444444455667789998 578899999999721   1111111111 11    36788877777777899999998


Q ss_pred             CCeeeE
Q psy16852         84 IGGVAT   89 (579)
Q Consensus        84 ~~g~~~   89 (579)
                      ......
T Consensus        81 ~~l~~~   86 (95)
T cd05719          81 PTLQEP   86 (95)
T ss_pred             cccCCC
Confidence            764333

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.64  E-value=0.00084  Score=49.41  Aligned_cols=32  Identities=16%  Similarity=0.289  Sum_probs=25.0

Q ss_pred             eecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCC
Q psy16852        419 AEAQSPATLKATVTGR-PTP-SICWYRGKEEILP  450 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~  450 (579)
                      ...+..++|.|.+.|+ |.. +++|.++|..+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~   46 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL   46 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence            4446789999999994 544 8899999998743

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.61  E-value=0.00045  Score=49.87  Aligned_cols=64  Identities=25%  Similarity=0.403  Sum_probs=43.8

Q ss_pred             CCCCEEEEEEEEee-CCC-eeEEEECCEEecCCCCEEEEE--eCC----EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         20 QEQPALFTCKVEGH-PLP-TMTWQKDGTELHATEHYLITT--VES----VSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        20 ~G~~~~l~C~~~~~-~~~-~v~W~~~g~~~~~~~~~~~~~--~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      .++.++|.|.+.++ |.. .|.|+++|..+..........  .++    .+.|.+.   ..+...|+|++.+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            48999999999885 433 799999999886543322222  122    2456665   5566689999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.59  E-value=0.058  Score=49.36  Aligned_cols=72  Identities=21%  Similarity=0.357  Sum_probs=47.5

Q ss_pred             CceeeCCCCeEEEEEEEE--ccCC-CeEEEEECCEEecc------------------Cc--------eEEeCCeEEEEEc
Q psy16852        219 QALLVPKDSTVTLEAEYT--GTPT-PEVKWFKNGKEIVS------------------KD--------IETKDNVTKLVIK  269 (579)
Q Consensus       219 ~~~~~~~g~~~~l~C~~~--~~p~-~~v~W~~~~~~i~~------------------~~--------~~~~~~~~~l~i~  269 (579)
                      ....+..|..+.|.|...  |+.. ..+.|+--|-++..                  ..        .......++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            345567799999999876  3333 37899764422210                  00        1112234799999


Q ss_pred             ccCCCCCeEEEEEEEcCCeee
Q psy16852        270 QTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       270 ~~~~~d~G~y~C~a~n~~g~~  290 (579)
                      ++..+.+|-|.|+|....-..
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~  372 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKE  372 (500)
T ss_pred             eEEEEcCCceEEEEecCcchh
Confidence            999999999999997654333

>KOG1480|consensus

Probab=97.54  E-value=1.7e-05  Score=77.51  Aligned_cols=173  Identities=17%  Similarity=0.250  Sum_probs=102.9

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCC----eeEEEECCEEecC---CCCEEEEEeCCEEEEEEcCCCCCCCE---
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP----TMTWQKDGTELHA---TEHYLITTVESVSTLEIINPTKEDIG---   75 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~----~v~W~~~g~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G---   75 (579)
                      -|.|+..|++-.+..|.++.|.|.+...+..    .=.|....+....   ++...+..  ......|.....++.|   
T Consensus        24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~--~~~si~Isr~~v~~~~~~~  101 (909)
T KOG1480|consen   24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGV--REVSIDISRQQVETSGGPE  101 (909)
T ss_pred             cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeE--EeeeeeeehhhhhcccCcc
Confidence            3678899999999999999999998644321    2334443332210   10000000  1134455555555544   


Q ss_pred             EEEEEEE--cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCc
Q psy16852         76 VYTCKAT--NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGH  152 (579)
Q Consensus        76 ~Y~C~~~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~  152 (579)
                      .|.|+-.  ...|...... -.|...-   ....+...+.-..+.++..+.+.|.. .+.|...++|++++..+.++...
T Consensus       102 d~~cQc~a~~~~g~~~s~~-a~vr~ay---~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~  177 (909)
T KOG1480|consen  102 DYWCQCVAWSDDGTVKSRK-ATVRIAY---LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV  177 (909)
T ss_pred             ceeeeeeeecCCCcchhhh-HHHHHHH---HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccc
Confidence            6777643  3334211110 0110000   00122233344567788899999986 56788899999998887774444


Q ss_pred             eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        153 TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       153 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      ....+     ..|.+..++..|.|+|+|++.|..+..
T Consensus       178 ~~~~d-----~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  178 IRASD-----HNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             hhhhc-----CCccccchhhhhcccceeeeehhhccc
Confidence            33332     469999999999999999999876643

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.53  E-value=0.00012  Score=48.14  Aligned_cols=51  Identities=22%  Similarity=0.471  Sum_probs=36.2

Q ss_pred             eCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852         19 HQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus        19 ~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      ..|..|+|+|...+   ..+.|++|+..+....          ..+.+.+-. ++.|.|+|.+.+
T Consensus         5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~~----------~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGSD----------EKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCC---CCceEEeCCccCCCCC----------ceEEeeccC-CCCceEEEEeCC
Confidence            46899999997542   2499999996665432          234444555 889999999854

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.50  E-value=0.00084  Score=49.07  Aligned_cols=70  Identities=14%  Similarity=0.239  Sum_probs=48.6

Q ss_pred             ccCc-eeeeCCCCEEE-EEEE-EeeCCCeeEEEECCEEec-------CCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852         12 KIQP-VVSHQEQPALF-TCKV-EGHPLPTMTWQKDGTELH-------ATEHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus        12 ~p~~-~~v~~G~~~~l-~C~~-~~~~~~~v~W~~~g~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      .+.+ +.+.+|+.+.+ +|.+ .|.|++.|.|+.+.....       ....+.+     .+.|++.....+|.-.++|++
T Consensus         6 ~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV-----~S~~~l~p~r~d~G~~vtC~V   80 (97)
T cd07704           6 SPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV-----TSEYIWVPSRHANGHPLTCVV   80 (97)
T ss_pred             CCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE-----EEEEEEEeCHHHCCcEEEEEE
Confidence            3344 66889999999 9997 567888999998633221       0112222     257787777777888999999


Q ss_pred             EcCCe
Q psy16852         82 TNIGG   86 (579)
Q Consensus        82 ~~~~g   86 (579)
                      .+..-
T Consensus        81 ~H~al   85 (97)
T cd07704          81 SHPAL   85 (97)
T ss_pred             eCccc
Confidence            88644

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.49  E-value=0.00083  Score=49.31  Aligned_cols=69  Identities=12%  Similarity=0.133  Sum_probs=43.4

Q ss_pred             eCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCCCEEEEE--eCC---EEEEEEcCCCCCCCEEEEEEEEcCCeeeEE
Q psy16852         19 HQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITT--VES---VSTLEIINPTKEDIGVYTCKATNIGGVATC   90 (579)
Q Consensus        19 ~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~~~~--~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~   90 (579)
                      -.-..+.++|.+. |.|.+.|+|+++....   .......  .+.   .+.|.+.....+|...|+|++.+.......
T Consensus        13 ~~~~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~   87 (95)
T cd07703          13 GTIPVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQ   87 (95)
T ss_pred             CCCccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence            3445678899875 6788899999972211   1111111  111   257788777777788999999987643333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.49  E-value=0.00039  Score=45.94  Aligned_cols=60  Identities=23%  Similarity=0.506  Sum_probs=42.3

Q ss_pred             CCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         20 QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        20 ~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      ..+.|.|+|.+.    .+|.|++ |..+....         +.+|.|.+...+-.|.|.|.+.+    ...+..|.|+
T Consensus         5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy   64 (69)
T cd07691           5 SEGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY   64 (69)
T ss_pred             cCceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence            356899999662    3699999 65554222         36788888899999999999865    2334455554

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.47  E-value=0.0011  Score=48.84  Aligned_cols=65  Identities=15%  Similarity=0.257  Sum_probs=39.0

Q ss_pred             CCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCE-EEEEe-CC----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852         20 QEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHY-LITTV-ES----VSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        20 ~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~-~~~~~-~~----~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      .++.++|.|.+.++ |. ..++|++||.. ..+... ..... ++    .+.|.+..-.......|+|++.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            57789999999885 43 47999999997 322100 01111 11    2344444332223568999998754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02633 hypothetical protein; Provisional

Probab=97.40  E-value=0.00071  Score=43.44  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=34.3

Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecc
Q psy16852         61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~  100 (579)
                      ...|.|.++..+|+|.|.|.++|..-....++.++|..+.
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            4679999999999999999999887777888888887553

>KOG0613|consensus

Probab=97.31  E-value=0.00074  Score=70.99  Aligned_cols=215  Identities=18%  Similarity=0.140  Sum_probs=123.8

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCC----------CCC---ceecCCCceEEccCCcEEEEEE
Q psy16852         62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG----------EAP---KFTKPLKPVIAEAQSPATLKAT  128 (579)
Q Consensus        62 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~----------~~~---~~~~~~~~~~~~~g~~~~l~C~  128 (579)
                      .++.|.+-...+.+.|+|...+..+.....+...+.......          .++   ........+....+..+++.|.
T Consensus       278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~  357 (1205)
T KOG0613|consen  278 NTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA  357 (1205)
T ss_pred             ccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence            456666666777788888887766655544443332211100          111   1111223455677888999999


Q ss_pred             EEeecCCe-EEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCC
Q psy16852        129 VTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR  207 (579)
Q Consensus       129 ~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (579)
                      ..+.+.+. +.||++......................+.|..+...+.+.|.|.+.|..|.........+......    
T Consensus       358 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~g----  433 (1205)
T KOG0613|consen  358 LSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPG----  433 (1205)
T ss_pred             ccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCC----
Confidence            98888775 9999876655444333333333334457888999999999999999999887655444444322111    


Q ss_pred             ccCCCeEeccCCceeeCC--CCeEEEEEEEEccCCC--eEEEEECCEEeccCce-EEeCCeEEEEEcccCCCCCeEEEEE
Q psy16852        208 VLEAPTIVRPLQALLVPK--DSTVTLEAEYTGTPTP--EVKWFKNGKEIVSKDI-ETKDNVTKLVIKQTTKKTTGKYEIR  282 (579)
Q Consensus       208 ~~~~p~~~~~~~~~~~~~--g~~~~l~C~~~~~p~~--~v~W~~~~~~i~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~  282 (579)
                        ..|.............  -+.+.+.|...+.+.+  .++|++++-+...... .......+|.+.-....+.|.|.-.
T Consensus       434 --t~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a  511 (1205)
T KOG0613|consen  434 --TQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRA  511 (1205)
T ss_pred             --CCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhh
Confidence              1222222222222223  3778889988877644  5666766544433221 1122334566666666777777443

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.31  E-value=0.0017  Score=47.78  Aligned_cols=77  Identities=21%  Similarity=0.228  Sum_probs=46.8

Q ss_pred             CCceeeecCCCeEEEEEEEee--CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        414 LKPVIAEAQSPATLKATVTGR--PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~--p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      +.......+..++|+|.+.|+  |.. .|.|.++|..   +. ..              ....+...|.|...       
T Consensus        11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~---~~-~~--------------t~~~~~~dgTys~~-------   65 (99)
T cd04986          11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK---EA-VQ--------------TSAESDQCGCYSVS-------   65 (99)
T ss_pred             cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc---Cc-EE--------------cCcccCCCCCEEEE-------
Confidence            333334468899999999984  433 8999998865   11 00              01112224556443       


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                             +.|.+..-+......|+|.+.+...
T Consensus        66 -------S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          66 -------SVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             -------EEEEeCHHHhcCCCeEEEEEECCCc
Confidence                   3377765555555679999987643

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.25  E-value=0.0011  Score=48.76  Aligned_cols=80  Identities=18%  Similarity=0.202  Sum_probs=45.4

Q ss_pred             CCccc-cccCceeeeCCCCEEEEEEEEeeC---CCeeEEEECCEEecCCCCEEEEEeCC----EEEEEEcCCCCCCCEEE
Q psy16852          6 APRFI-EKIQPVVSHQEQPALFTCKVEGHP---LPTMTWQKDGTELHATEHYLITTVES----VSTLEIINPTKEDIGVY   77 (579)
Q Consensus         6 ~p~~~-~~p~~~~v~~G~~~~l~C~~~~~~---~~~v~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y   77 (579)
                      +|.+. .+|.......+..++|+|.+.+.-   ...|.|.++|.. ...........++    .+.|.|..-...-...|
T Consensus         3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~y   81 (99)
T cd04986           3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPF   81 (99)
T ss_pred             CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence            34433 345555566789999999998843   248999999875 1110000000011    24555542222333469


Q ss_pred             EEEEEcCCe
Q psy16852         78 TCKATNIGG   86 (579)
Q Consensus        78 ~C~~~~~~g   86 (579)
                      +|++.+...
T Consensus        82 tC~V~H~~l   90 (99)
T cd04986          82 ACTVTHPEG   90 (99)
T ss_pred             EEEEECCCc
Confidence            999987643

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.19  E-value=0.0033  Score=46.18  Aligned_cols=72  Identities=14%  Similarity=0.117  Sum_probs=43.9

Q ss_pred             CcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCC---eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852        121 SPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTG---ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL  195 (579)
Q Consensus       121 ~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  195 (579)
                      ....+.|.. .|.|++.|+|+++...   ...........+.   .+.|.+.....+|...|+|++.|..........+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            457889987 5789999999987211   1111111111111   2467776666677779999999876544443333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.16  E-value=0.0049  Score=46.31  Aligned_cols=71  Identities=14%  Similarity=0.194  Sum_probs=50.5

Q ss_pred             CCceEEccCCcEEEEEEEEeec--C-CeEEEEECCEEc---------------cCCCCceEEEcCCCCeEEEEECcCCCC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--T-PSICWYRGKEEI---------------LPDNGHTMEFNPTTGECVLSISEATPQ  173 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~-~~i~W~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~i~~~~~~  173 (579)
                      +....+..|+.++|.|.++++.  . ..+.|+|.....               ....+.....+.......|.|.+++.+
T Consensus         5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence            3456677899999999986543  3 478898842210               012233455566667789999999999


Q ss_pred             CCeEEEEEE
Q psy16852        174 DEAVYSVKA  182 (579)
Q Consensus       174 d~G~Y~C~~  182 (579)
                      |.+.|.|..
T Consensus        85 DTa~Y~Ca~   93 (115)
T cd05721          85 QTDIYFCKI   93 (115)
T ss_pred             HCeEEEEEe
Confidence            999999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG0613|consensus

Probab=97.11  E-value=0.005  Score=65.05  Aligned_cols=254  Identities=13%  Similarity=0.051  Sum_probs=146.7

Q ss_pred             eeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852        222 LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA  301 (579)
Q Consensus       222 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~  301 (579)
                      ....+....|.|.+.+.+.+.+.|+.+.......    ..+...+.+.+......+.|+|...+..+.........+.+.
T Consensus       240 ~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~----~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~  315 (1205)
T KOG0613|consen  240 VTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK----HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIG  315 (1205)
T ss_pred             cccchhheeeeEEeecCCCchHHHHhcchhhhcc----cCCCccccccccCCccccceeeecccCCcccceeeeEEeecc
Confidence            3556778899999998888888887765443322    234456777777888888899988887776555444444321


Q ss_pred             cce---ee---e----eeeeeeccccCceeeee---cCeeEEEeeeCCCe-EEEEECCEEccCCCeEEE-EECCCCeEEE
Q psy16852        302 EAE---TV---M----MDVRVESHPTASFQWFI---HSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVTI-YQDTDGLCKL  366 (579)
Q Consensus       302 ~~~---~~---~----l~~~~~~~~~~~~~~~~---~~~~~~~~g~p~~~-i~W~~~~~~~~~~~~~~~-~~~~~~~~~l  366 (579)
                      .+.   ..   .    ....+.......+.|..   ...+|...+.+.+. +.|++++.....+..-.. .........+
T Consensus       316 ~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~  395 (1205)
T KOG0613|consen  316 KGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTY  395 (1205)
T ss_pred             ccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcch
Confidence            110   00   0    00000011111111111   11235556666664 899988776654431111 1111222368


Q ss_pred             EEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecC--CCeEEEEEEEeeCCC--eEEEe
Q psy16852        367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ--SPATLKATVTGRPTP--SICWY  442 (579)
Q Consensus       367 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g--~~~~l~C~~~g~p~~--~v~W~  442 (579)
                      .|..+...+.+.|.|.|.|..|.........+....+...++.+. .....+...+  +.+.+.|...+.+.+  .++|.
T Consensus       396 ~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~k-k~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~  474 (1205)
T KOG0613|consen  396 TIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFK-KDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTI  474 (1205)
T ss_pred             hhhhcCcccccccccceeccCCcccccchhhcccccCCCCCcccc-ccccccccccCCcccccccCCCCccccceeEeec
Confidence            899999999999999999999977666555555543333333333 2233333444  788999998887755  55666


Q ss_pred             eCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      +++......  .....  .+...+|.+.-....|+|.|.-..
T Consensus       475 ~~~~~~s~~--s~~l~--r~~~tslLlk~~~~~~~A~~~~a~  512 (1205)
T KOG0613|consen  475 KDGLPLSDR--SVTLT--RDVLTSLLLKVASLSDGAQYTRAL  512 (1205)
T ss_pred             cCCcccccc--ccccc--ccchhhheeeccCCCccchhhhhh
Confidence            665443221  11111  444556777777888888774333

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.10  E-value=0.001  Score=44.02  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=16.7

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcC
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEIL  449 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~  449 (579)
                      .+.|.|+|.+    ..+|.|++ |..+.
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~   28 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEIL   28 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Ccccc
Confidence            4679999965    24699999 55543

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.09  E-value=0.00098  Score=43.85  Aligned_cols=26  Identities=15%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             cCCCeEEEEEEEeeCCCeEEEeeCCEEcC
Q psy16852        421 AQSPATLKATVTGRPTPSICWYRGKEEIL  449 (579)
Q Consensus       421 ~g~~~~l~C~~~g~p~~~v~W~~~~~~l~  449 (579)
                      .|..|+|+|...+.   .+.|++++..+.
T Consensus         6 sGTtVtlTCP~~~~---~i~W~~n~~~~~   31 (65)
T cd07692           6 SGTTVTVTCPLSGD---DIKWKKNDQVSQ   31 (65)
T ss_pred             eccEEEEECCCCCC---CceEEeCCccCC
Confidence            58899999976522   399999986654

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.07  E-value=0.0028  Score=45.95  Aligned_cols=66  Identities=21%  Similarity=0.284  Sum_probs=41.3

Q ss_pred             eeCCCCEEEEEEEEe-eCC--CeeEEEECCEEecCCCCEEE----EEeCCEEEEEEcCCCCCCCE-EEEEEEEcC
Q psy16852         18 SHQEQPALFTCKVEG-HPL--PTMTWQKDGTELHATEHYLI----TTVESVSTLEIINPTKEDIG-VYTCKATNI   84 (579)
Q Consensus        18 v~~G~~~~l~C~~~~-~~~--~~v~W~~~g~~~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~   84 (579)
                      +.+|..++|.|.+.+ +|.  ..+.|++....+........    ........++|... .+|.| .|+|+|...
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence            379999999999964 344  47999987766654321110    00111245555554 66655 999999743

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.99  E-value=0.002  Score=47.15  Aligned_cols=70  Identities=10%  Similarity=0.133  Sum_probs=45.9

Q ss_pred             ceEEccCCcEEE-EEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        114 PVIAEAQSPATL-KATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       114 ~~~~~~g~~~~l-~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      ...+.+|+.+.+ .|.. .|.|+++|+|+.+.....   ....... .++    .+.+.+...+.+|.-.++|++.+..-
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~-~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEH-PNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecC-CCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            455678899999 9986 678999999997633221   0111111 111    24567766667777799999988754

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA02982 hypothetical protein; Provisional

Probab=96.94  E-value=0.0098  Score=48.93  Aligned_cols=118  Identities=15%  Similarity=0.327  Sum_probs=73.1

Q ss_pred             ceeeeCCCCEEEEEEEEee-CCCeeEEEECCE-----------EecC--------CCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852         15 PVVSHQEQPALFTCKVEGH-PLPTMTWQKDGT-----------ELHA--------TEHYLITTVESVSTLEIINPTKEDI   74 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~-----------~~~~--------~~~~~~~~~~~~~~L~i~~~~~~d~   74 (579)
                      ++....|++|.|.|..... .-.+..|+.+..           .+..        ...+.++..+..++|+|.++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            4677889999999996332 234688987432           1211        2345667777889999999999999


Q ss_pred             EEEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEcc-CCcEEEEEEEEeecCCeEEEEECCE
Q psy16852         75 GVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEA-QSPATLKATVTGRPTPSICWYRGKE  144 (579)
Q Consensus        75 G~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-g~~~~l~C~~~~~p~~~i~W~~~~~  144 (579)
                      |-|+|++....+..+. +.=+.|+..     ...+       ...+ ...-.+.|.+.+.-..-..|.-+|-
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~~~-----~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV  172 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQKE-----DILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGI  172 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEecc-----eEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence            9999999876543332 222233100     0011       1112 3445779988655443347877654

>KOG1480|consensus

Probab=96.88  E-value=0.00038  Score=68.54  Aligned_cols=175  Identities=21%  Similarity=0.288  Sum_probs=99.6

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEE-EcCCCC----eEEEEECcCCCCCCe---
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTME-FNPTTG----ECVLSISEATPQDEA---  176 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G---  176 (579)
                      .+.+...+.+-.+..|..+.|.|.+.  |.++|.+.-+..-+......... .+...+    .....|.....++.|   
T Consensus        24 l~~~~~~p~~~yii~~~p~~l~c~a~--~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~  101 (909)
T KOG1480|consen   24 LPHFTTEPKSAYIIKNKPLRLQCKAN--PATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPE  101 (909)
T ss_pred             cceeeecCCccceecCCCccceecCC--cccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcc
Confidence            34566667777788899999999975  44444333332222222111111 111111    123444444444433   


Q ss_pred             EEE--EEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE-EccCCCeEEEEECCEEec
Q psy16852        177 VYS--VKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIV  253 (579)
Q Consensus       177 ~Y~--C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~i~  253 (579)
                      .|.  |.+....|...... -.+..        .+..-.+...+....+..+..+.+.|.. .+.|...+.|++++..+.
T Consensus       102 d~~cQc~a~~~~g~~~s~~-a~vr~--------ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~  172 (909)
T KOG1480|consen  102 DYWCQCVAWSDDGTVKSRK-ATVRI--------AYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVID  172 (909)
T ss_pred             ceeeeeeeecCCCcchhhh-HHHHH--------HHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCC
Confidence            555  55666555221110 01110        0111223333444557778888999865 467778999999998877


Q ss_pred             cCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        254 SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       254 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                      ............+.+..+...|.|+|+|+|.|-.+..
T Consensus       173 pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  173 PDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             ccccchhhhcCCccccchhhhhcccceeeeehhhccc
Confidence            6443333444568889999999999999999877653

>PHA02633 hypothetical protein; Provisional

Probab=96.85  E-value=0.0037  Score=40.27  Aligned_cols=37  Identities=22%  Similarity=0.169  Sum_probs=32.4

Q ss_pred             eeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        497 RSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ...|.|-++.-+|+|.|.|+..|..=....++.|+|.
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            3449999999999999999999988888888888875

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.73  E-value=0.0051  Score=47.38  Aligned_cols=90  Identities=13%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             eecCCCeEEEEEEEee-----CCCeEEEeeCCEEcCCC--CCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        419 AEAQSPATLKATVTGR-----PTPSICWYRGKEEILPD--NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-----p~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      ...++++.|.|.+...     +...|.|.++|..+-..  ...... ......+.+  .+....|               
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~-~~~f~sa~i--~~l~kG~---------------   85 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKST-SDNFPSAKI--SELLKGN---------------   85 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEE-EGGGTT-BE--GGGGGTB---------------
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceec-ccCccccch--hHhhCCC---------------
Confidence            3458899999998642     22369999998876221  111110 001111122  3333322               


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                            +.|.+...+.- .|+|+|.|.....+....++|+..
T Consensus        86 ------aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen   86 ------ASLKMDKSDAV-EGNYTCEVTELSREGETTIELKYR  120 (130)
T ss_dssp             --------EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE-
T ss_pred             ------EEEEEcchhcc-ccceEEEEEecCCCceEEEEEEEE
Confidence                  34777775555 899999999998888888888863

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.44  E-value=0.022  Score=41.50  Aligned_cols=65  Identities=15%  Similarity=0.155  Sum_probs=42.2

Q ss_pred             eCCCCeEEEEEEEEc-cCC--CeEEEEECCEEeccCceEE-------eCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        223 VPKDSTVTLEAEYTG-TPT--PEVKWFKNGKEIVSKDIET-------KDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       223 ~~~g~~~~l~C~~~~-~p~--~~v~W~~~~~~i~~~~~~~-------~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      +.+|+.+++.|.+.+ +|.  ..+.|++....+.......       ......+++.....+|.-.|+|+|.-..
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l   86 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHI   86 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEee
Confidence            467999999999985 555  4799998766555433111       1233556666554444449999996443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.43  E-value=0.0017  Score=49.93  Aligned_cols=78  Identities=13%  Similarity=0.195  Sum_probs=46.0

Q ss_pred             ccCCcEEEEEEEEee-----cCCeEEEEECCEEccCCCC------------ceEEEcCCCCeEEEEECcCCCCCCeEEEE
Q psy16852        118 EAQSPATLKATVTGR-----PTPSICWYRGKEEILPDNG------------HTMEFNPTTGECVLSISEATPQDEAVYSV  180 (579)
Q Consensus       118 ~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  180 (579)
                      .=++++.|+|.+...     +...|.|.+++..+..-++            ..+ .+...|..+|.+...+.- .|+|+|
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEE
Confidence            348899999998532     2357999998887542111            112 223346677888875444 899999


Q ss_pred             EEEcCCceeEEEEEEEE
Q psy16852        181 KAVNTFGRAECRANLVL  197 (579)
Q Consensus       181 ~~~~~~~~~~~~~~~~v  197 (579)
                      .+.......+....+..
T Consensus       103 eVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  103 EVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEecCCCceEEEEEEE
Confidence            99887766665555554

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02982 hypothetical protein; Provisional

Probab=95.97  E-value=0.021  Score=47.13  Aligned_cols=90  Identities=19%  Similarity=0.328  Sum_probs=46.9

Q ss_pred             eeeecCCCeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        417 VIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      +....++++.|+|... +....+..|+.+........        .++...+--.+--+   |.|     -+-+.+..++
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~--------~~~~~~iN~~~y~~---~~~-----kd~y~~sv~g   97 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQE--------ANGGTGINAFNYVP---GPY-----KDKYALSVSG   97 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEee--------ecCcceeccccccC---Ccc-----ceeEEEEEec
Confidence            3456799999999853 23334789998543211100        11111110000000   001     1123455667


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      ..|+|+|+++..+..|=|+|.|....+
T Consensus        98 ~~STLTIkk~~i~N~GCYtc~~ks~~~  124 (251)
T PHA02982         98 NSSTFTMKKPDPQNLGCFTCEAKDAEG  124 (251)
T ss_pred             cceeEEeccCCcccCCceEEEEecCCC
Confidence            777777777777777777777766544

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.95  E-value=0.021  Score=41.72  Aligned_cols=84  Identities=15%  Similarity=0.162  Sum_probs=46.9

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEE---------------CCEEecCC--CCEEEEEeCCEEEEEEcCCCCCCCE
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQK---------------DGTELHAT--EHYLITTVESVSTLEIINPTKEDIG   75 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~---------------~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G   75 (579)
                      ++.+....|+++.|.=.......-+++|..               ++......  ..-+..+...+..|.|..++..|+|
T Consensus         5 ~~~VvgiSG~pl~LrP~~~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG   84 (108)
T PF11465_consen    5 ADHVVGISGKPLQLRPSNIQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSG   84 (108)
T ss_dssp             EEEEEEETTS-EEE--SS---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-E
T ss_pred             ccceEEccCCEEEECCCCccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCc
Confidence            455777788888887332111122466643               33332221  1112344445678999999999999


Q ss_pred             EEEEEEEcCCeeeEE-EEEEEE
Q psy16852         76 VYTCKATNIGGVATC-SANLIV   96 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~-~~~~~v   96 (579)
                      .|.-++++..|.... ...+.|
T Consensus        85 ~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   85 LYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEE
T ss_pred             eEEEEEEcCCCcEEEEEEEEEe
Confidence            999999999887643 334433

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG4597|consensus

Probab=95.25  E-value=0.031  Score=52.36  Aligned_cols=94  Identities=14%  Similarity=0.061  Sum_probs=63.4

Q ss_pred             eecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee
Q psy16852        410 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET  489 (579)
Q Consensus       410 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~  489 (579)
                      +..-+....+..|++..++|-+.|.|.+.|.|.+.-     .++..+.+.   .+..+                 .+   
T Consensus       199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~-----anr~~vv~~---~nq~~-----------------e~---  250 (560)
T KOG4597|consen  199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVF-----ANRENVVMR---PNQTV-----------------EN---  250 (560)
T ss_pred             cccCcchhhcccchhhcccccccCCcCceeeeehhh-----ccccceeec---Ccccc-----------------CC---
Confidence            333344556788999999999999999999998731     122222110   00000                 00   


Q ss_pred             eeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                        ..-.....|.|.+....|+|.|+|.|.|..|-..+.+.+.+.
T Consensus       251 --p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~  292 (560)
T KOG4597|consen  251 --PVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV  292 (560)
T ss_pred             --cceeeeeeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence              011234459999999999999999999999998888887764

>KOG4597|consensus

Probab=95.16  E-value=0.033  Score=52.16  Aligned_cols=91  Identities=19%  Similarity=0.188  Sum_probs=69.0

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE---CCEEecCCCC--EEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK---DGTELHATEH--YLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~---~g~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      |.++.-|....+.+|++..++|-+.|.+.+.|+|.+   |++.+.....  +..........|.|=+....|+|-|+|.+
T Consensus       197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~  276 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA  276 (560)
T ss_pred             cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence            567777888899999999999999999999999965   4444332221  11112223577999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEE
Q psy16852         82 TNIGGVATCSANLIVL   97 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~   97 (579)
                      .+..|-....+.+.+.
T Consensus       277 rcg~g~~~rdv~c~s~  292 (560)
T KOG4597|consen  277 RCGAGFLRRDVPCSSV  292 (560)
T ss_pred             ccccceeeccceeeee
Confidence            9998877777776664

>PHA03042 CD47-like protein; Provisional

Probab=95.02  E-value=0.094  Score=45.59  Aligned_cols=70  Identities=20%  Similarity=0.218  Sum_probs=44.3

Q ss_pred             cCCCeEEEEEEEee-----CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        421 AQSPATLKATVTGR-----PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-----p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      .++++.+.|.++.-     ..-.+.|.+++..+-..++.                                         
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------------------------------------   68 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------------------------------------   68 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------------------------------------
Confidence            57899999999731     23369999998877432211                                         


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ..+.|.+...+.- .|+|+|.|.+..-+....++|+-
T Consensus        69 n~aSL~~~f~~~l-~GNYTCEv~~l~n~gk~~IeLk~  104 (286)
T PHA03042         69 NTSSLKFNFSKNL-SGNYTCEAINKFNKIKNTIELQY  104 (286)
T ss_pred             cceEEEEeccccC-CCceeEEEeecccCccEEEEEEE
Confidence            0122444333222 69999999887666566666654

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=94.67  E-value=1.8  Score=36.88  Aligned_cols=103  Identities=13%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             CeEEEEECCEEccCCCe---EEEEECC--CCeEEEEEc-ccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCee
Q psy16852        337 PLVTWSHDGTPMKEGKE---VTIYQDT--DGLCKLAIS-EVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKF  410 (579)
Q Consensus       337 ~~i~W~~~~~~~~~~~~---~~~~~~~--~~~~~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~  410 (579)
                      ..+.|+.||.++.....   .....++  ...++|.+. +...+..-..+|.+.-.......+ .+.-...+..-.+|.+
T Consensus         7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~-r~~a~~~P~Vy~~P~v   85 (211)
T PF02124_consen    7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSET-RFNATATPSVYPKPRV   85 (211)
T ss_pred             EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeee-EeecccccceecCCEE
Confidence            36899999998875422   1222221  123556662 223333457999986433322211 1111111111123333


Q ss_pred             ecCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEc
Q psy16852        411 TKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEI  448 (579)
Q Consensus       411 ~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l  448 (579)
                      .     ..+   +.-...|.+...|..  .+.|.-++...
T Consensus        86 s-----v~F---~~g~AVC~A~CVP~~~v~l~W~v~d~~~  117 (211)
T PF02124_consen   86 S-----VRF---EDGYAVCTARCVPRGNVTLRWSVGDDPS  117 (211)
T ss_pred             E-----EEe---cCCEEEEEcceeeCCCeEEEEEECCccC
Confidence            2     223   334556888877744  89999887654

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.63  E-value=0.052  Score=47.01  Aligned_cols=48  Identities=27%  Similarity=0.337  Sum_probs=35.3

Q ss_pred             CCCeeEEEEC-CEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852         34 PLPTMTWQKD-GTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus        34 ~~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      ..|.+.|..+ |+.+.......++   .++.|++.+...+++|.|+|..+..
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT---~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNIT---ETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEc---cCceEEeeccccccCCceEEEEEEE
Confidence            3578999875 5555555444443   3456999999999999999998653

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.32  E-value=0.47  Score=33.48  Aligned_cols=62  Identities=23%  Similarity=0.426  Sum_probs=39.0

Q ss_pred             EEEEEEEeeC-------CCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE-EcCCeeeEEEEEEEE
Q psy16852         25 LFTCKVEGHP-------LPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA-TNIGGVATCSANLIV   96 (579)
Q Consensus        25 ~l~C~~~~~~-------~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~~~~g~~~~~~~~~v   96 (579)
                      .|+|..-+..       .+.+.|+-.+.......          ..+.....+.+|+|.+.|.| .+..-.......+.|
T Consensus         9 ~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~~~~~----------~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen    9 VLPCEVLELTLEKPPGMKPSLFLENPGKKSLETK----------KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEEEESECEEETTTECEEEEEECSSCEEEEES----------SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             EeeeeeEEEEEcCCCCCChhheeeccCccccccc----------eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4566653332       35788887766553332          34566778899999999999 554444455555544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=94.25  E-value=0.39  Score=34.76  Aligned_cols=69  Identities=14%  Similarity=0.345  Sum_probs=46.7

Q ss_pred             ccCceeeeCCCCEEEEEEEEee-----CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGH-----PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~-----~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .|+...+..|++|+..|.....     ....+.|..|+..++.+ .++ ......+.++|.+.....+-.|-|...
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~-~in~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYR-VINDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEE-EESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-Hcc-eeCCeEEEEEEccCCCCCceEEEEEEc
Confidence            3566678999999999998532     34579999999966544 333 334455888998888777777777643

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.24  E-value=0.18  Score=46.21  Aligned_cols=21  Identities=19%  Similarity=0.580  Sum_probs=17.4

Q ss_pred             CEEEEEEEEee-CC-CeeEEEEC
Q psy16852         23 PALFTCKVEGH-PL-PTMTWQKD   43 (579)
Q Consensus        23 ~~~l~C~~~~~-~~-~~v~W~~~   43 (579)
                      .++|+|.|.|. |. ..+.|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            58999999985 43 47999999

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.23  E-value=0.084  Score=45.79  Aligned_cols=46  Identities=15%  Similarity=0.167  Sum_probs=25.8

Q ss_pred             CCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        435 PTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       435 p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      ..|.+.|...+..+..+ .+..+.   +.  +.|.+.++.+.++|.|+|..+
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT---~T--G~L~~~~F~esmSG~YTCtLs   57 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNIT---ET--GKLMFKNFQESMSGSYTCTLS   57 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEc---cC--ceEEeeccccccCCceEEEEE
Confidence            45789999876554443 333332   22  235556666666555555544

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=94.14  E-value=0.41  Score=34.55  Aligned_cols=84  Identities=13%  Similarity=0.111  Sum_probs=51.6

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      +...|....|..|+++.+.|...-..+..+.|--.-.      +........-..+.|.+++. | ..-.|.+.-.....
T Consensus         6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~------k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~   77 (91)
T PF03921_consen    6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS------KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQS   77 (91)
T ss_dssp             EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSE------EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEE
T ss_pred             EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecC------CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEE
Confidence            3457899999999999999998533232455532111      11112223346788888886 4 56689887554455


Q ss_pred             EEEEEEEEEecc
Q psy16852         89 TCSANLIVLEKE  100 (579)
Q Consensus        89 ~~~~~~~v~~~~  100 (579)
                      ..+..|+|+..|
T Consensus        78 ~~~~~ItVY~~P   89 (91)
T PF03921_consen   78 SASANITVYKPP   89 (91)
T ss_dssp             EEEEEEEEEB--
T ss_pred             EeEEeeEEeCCC
Confidence            667888887543

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=94.03  E-value=5.2  Score=37.31  Aligned_cols=75  Identities=16%  Similarity=0.134  Sum_probs=49.4

Q ss_pred             CeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCC-eEEEEEEEee--CCCe
Q psy16852        362 GLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSP-ATLKATVTGR--PTPS  438 (579)
Q Consensus       362 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~-~~l~C~~~g~--p~~~  438 (579)
                      ..++|+|..+.-+.+|=|+|+|....-......-|.|....       +.     ....+|+. ....|-+-..  .+++
T Consensus       344 k~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V-------~f-----~W~~e~~n~T~V~Cyv~sy~~kp~s  411 (500)
T PHA02914        344 KNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHV-------FF-----KWNTEGDNETKVACYAAQYDMQPFS  411 (500)
T ss_pred             hhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEE-------EE-----EEEeccCceEEEEEEEEecccCCce
Confidence            45799999999999999999998765555555555554310       10     11224444 3567877544  4558


Q ss_pred             EEEeeCCEEc
Q psy16852        439 ICWYRGKEEI  448 (579)
Q Consensus       439 v~W~~~~~~l  448 (579)
                      +.|.-+|-..
T Consensus       412 i~wkvnGV~~  421 (500)
T PHA02914        412 ILWKSNGVSF  421 (500)
T ss_pred             eEEEEccEEe
Confidence            9999988654

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=93.98  E-value=0.55  Score=34.58  Aligned_cols=93  Identities=18%  Similarity=0.355  Sum_probs=51.7

Q ss_pred             EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCC--eEEEEECCEEccC---CCeEEEEECCCCeEEEEEcccC
Q psy16852        298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP--LVTWSHDGTPMKE---GKEVTIYQDTDGLCKLAISEVF  372 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~--~i~W~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~  372 (579)
                      |....|.++.|...-..-...++.|...     ....+..  .++|..+..+...   +.++... ..+.  .|.|+.++
T Consensus         8 VvgiSG~pl~LrP~~~Qtk~~sv~WK~~-----l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~-~enl--aLlIkaAq   79 (108)
T PF11465_consen    8 VVGISGKPLQLRPSNIQTKVYSVQWKMQ-----LPSQKKFEVILTWKNDSTPSYNSSFNNRFNFT-SENL--ALLIKAAQ   79 (108)
T ss_dssp             EEEETTS-EEE--SS---SSEEEEEEEE-----ETSSSEEE-EEEEETTEEEESSTTHHHHEEEE-TTTT--EEEESS-S
T ss_pred             eEEccCCEEEECCCCccceeEEEEEEEE-----cccCCceEEEEEEcCCCcccccccccceEeee-ccCc--eEEEeecC
Confidence            3445677777765544444456777542     1233333  3677655554433   2333332 2333  89999999


Q ss_pred             CCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852        373 PENAGLYSCTAVNPVGEAVAAATLAVE  399 (579)
Q Consensus       373 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~  399 (579)
                      ..|+|.|.-.+++..|.. ....+.|.
T Consensus        80 ~qDSG~Y~LEvT~~sG~V-~~~~FqVs  105 (108)
T PF11465_consen   80 PQDSGLYCLEVTNESGKV-CTKNFQVS  105 (108)
T ss_dssp             GGG-EEEEEEEEETTSCE-EEEEEEEE
T ss_pred             cccCceEEEEEEcCCCcE-EEEEEEEE
Confidence            999999999999998866 44444443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03042 CD47-like protein; Provisional

Probab=93.97  E-value=0.33  Score=42.37  Aligned_cols=61  Identities=20%  Similarity=0.318  Sum_probs=41.8

Q ss_pred             CCCCeEEEEEEEEcc-----CCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852        224 PKDSTVTLEAEYTGT-----PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG  288 (579)
Q Consensus       224 ~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g  288 (579)
                      .-++++.+.|.++..     ....++|.++++.+...+..   +.++|.+.. ...-.|+|+|+|.+...
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f-~~~l~GNYTCEv~~l~n   94 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNF-SKNLSGNYTCEAINKFN   94 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEec-cccCCCceeEEEeeccc
Confidence            347899999998742     24479999999887654422   334565543 34458999999986543

>PHA03283 envelope glycoprotein E; Provisional

Probab=93.87  E-value=6.9  Score=38.15  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=52.9

Q ss_pred             EEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCC--CCCeee-------------cCCCceeeecCCCeEEE
Q psy16852        364 CKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESG--EAPKFT-------------KPLKPVIAEAQSPATLK  428 (579)
Q Consensus       364 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~--~~p~~~-------------~~~~~~~~~~g~~~~l~  428 (579)
                      ..|.|.+++.+++|.|+-...+..+.....+.|.|+......  .||...             ..-.......|+++.|.
T Consensus       134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls  213 (542)
T PHA03283        134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS  213 (542)
T ss_pred             CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence            379999999999999999999887755556677776632211  112111             01122447789999887


Q ss_pred             EEEEeeC--C---CeEEEeeC
Q psy16852        429 ATVTGRP--T---PSICWYRG  444 (579)
Q Consensus       429 C~~~g~p--~---~~v~W~~~  444 (579)
                      -......  .   .++.|++-
T Consensus       214 i~l~s~~~d~~fs~~i~Wyy~  234 (542)
T PHA03283        214 VHLESDIGDPSFSATIDWYYM  234 (542)
T ss_pred             EEEeeccCCCCceEEEEEEEe
Confidence            7665422  2   27999983

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=93.84  E-value=3.5  Score=35.17  Aligned_cols=132  Identities=16%  Similarity=0.235  Sum_probs=64.7

Q ss_pred             eEEEEECCEEeccCce------EEe---CCeEEEEE-cccCCCCCeEEEEEEEcCCe---eeEEEEEEEEEeccceeeee
Q psy16852        242 EVKWFKNGKEIVSKDI------ETK---DNVTKLVI-KQTTKKTTGKYEIRVVNEAG---EARTSGSVTITVAEAETVMM  308 (579)
Q Consensus       242 ~v~W~~~~~~i~~~~~------~~~---~~~~~l~i-~~~~~~d~G~y~C~a~n~~g---~~~~~~~~~v~~~~~~~~~l  308 (579)
                      .++|+.||.++.....      ...   ...++|++ .+......=..+|.+.-...   ....+..+.-.+...+.+.+
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv   87 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV   87 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence            6899999998875441      111   12345555 22233344578999853222   12223333333444444444


Q ss_pred             eeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECCEEccCCCeEEEEEC-CCCeEEEEEcccC--CCCCE--EEEE
Q psy16852        309 DVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDGTPMKEGKEVTIYQD-TDGLCKLAISEVF--PENAG--LYSC  381 (579)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~--~~d~G--~Y~C  381 (579)
                      ..            .....-|.+..-|.  ..+.|.-++.............. .+......|....  ....|  .|+|
T Consensus        88 ~F------------~~g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC  155 (211)
T PF02124_consen   88 RF------------EDGYAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTC  155 (211)
T ss_pred             Ee------------cCCEEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEE
Confidence            22            11222366666663  58999988776432222222110 0111133443332  23445  8999


Q ss_pred             EEEc
Q psy16852        382 TAVN  385 (579)
Q Consensus       382 ~a~n  385 (579)
                      .+..
T Consensus       156 ~l~G  159 (211)
T PF02124_consen  156 RLIG  159 (211)
T ss_pred             EEee
Confidence            9853

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03189 UL14 tegument protein; Provisional

Probab=93.83  E-value=0.54  Score=41.62  Aligned_cols=86  Identities=17%  Similarity=0.306  Sum_probs=50.7

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCC--e--eEEEE-------------CCEEecCC-------CCEEEEEeCCEEEEEEc-
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLP--T--MTWQK-------------DGTELHAT-------EHYLITTVESVSTLEII-   67 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~--~--v~W~~-------------~g~~~~~~-------~~~~~~~~~~~~~L~i~-   67 (579)
                      |.+..+..|+.|++.|.+....-|  .  ++.-+             +|.++..+       ...+++..+....|++. 
T Consensus        59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF  138 (348)
T PHA03189         59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF  138 (348)
T ss_pred             CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence            677889999999999998544322  2  22211             22222111       22333333334555555 


Q ss_pred             CCCCCCCEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852         68 NPTKEDIGVYTCKATNIGGVATCSANLIVLE   98 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~   98 (579)
                      ++..+-+|.|.|...|..........++|.+
T Consensus       139 ~v~t~taG~Y~CvLrN~tHglv~~rf~ivtd  169 (348)
T PHA03189        139 RVSTSTAGMYECVLRNETHGLVLQRFVIVTD  169 (348)
T ss_pred             EEEecccceEEEEeccccceeeeEEeeeeee
Confidence            6677789999999998765444444455543

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.40  E-value=0.73  Score=33.36  Aligned_cols=56  Identities=13%  Similarity=0.188  Sum_probs=33.5

Q ss_pred             eeeecCCCeEEEEEEEe-----eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCC
Q psy16852        417 VIAEAQSPATLKATVTG-----RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD  476 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d  476 (579)
                      ..+..|++++..|.+.-     .....+.|..++..++.+....+    .++.+.+++.+.....
T Consensus        13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i----n~~~SsVT~~~~~~~~   73 (89)
T PF06328_consen   13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI----NDTVSSVTLPNLNPTG   73 (89)
T ss_dssp             SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE----STTEEEEEESS--SSE
T ss_pred             CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee----CCeEEEEEEccCCCCC
Confidence            35778999999999862     24458999999996655443333    3444455555444444

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03052 Hypothetical protein; Provisional

Probab=92.06  E-value=0.37  Score=31.79  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=29.1

Q ss_pred             ccCceeeeCCCCEEEEEEEEee---CCCeeEEEECCEEe
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGTEL   47 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~---~~~~v~W~~~g~~~   47 (579)
                      .|+.+.+.-|..++|.|++.-.   ..+.+.|.-|+..+
T Consensus         3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            3577889999999999999532   24579999999887

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=92.04  E-value=2  Score=31.19  Aligned_cols=74  Identities=18%  Similarity=0.142  Sum_probs=45.9

Q ss_pred             CCCccccccCceeeeCC----CCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQE----QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G----~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      -+|+|+.+++...+...    +...|.+++.+. ...+.||.||+.+......        ..+.+.   ....|.|+-.
T Consensus         9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~~---~~~~G~h~l~   76 (89)
T PF06832_consen    9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFWQ---PDRPGEHTLT   76 (89)
T ss_pred             CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEeC---CCCCeeEEEE
Confidence            46677766665333332    256666776655 3489999999999433221        223332   2458999998


Q ss_pred             EEcCCeeeEE
Q psy16852         81 ATNIGGVATC   90 (579)
Q Consensus        81 ~~~~~g~~~~   90 (579)
                      +.+..|....
T Consensus        77 vvD~~G~~~~   86 (89)
T PF06832_consen   77 VVDAQGRSAS   86 (89)
T ss_pred             EEcCCCCEEE
Confidence            8887775544

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03281 envelope glycoprotein E; Provisional

Probab=91.80  E-value=11  Score=36.83  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=52.5

Q ss_pred             EEEEcccCCCCCEEEEEEEEcCceeEEE-EEEEEEEecccC-CCCCeeecCC----------CceeeecCCCeEEEEEEE
Q psy16852        365 KLAISEVFPENAGLYSCTAVNPVGEAVA-AATLAVEEKEES-GEAPKFTKPL----------KPVIAEAQSPATLKATVT  432 (579)
Q Consensus       365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~-~~~p~~~~~~----------~~~~~~~g~~~~l~C~~~  432 (579)
                      .|.|.+++..++|.|+-......|.... .+.|.|+...+. ...|.+...+          .......|+++.|.-...
T Consensus       299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~  378 (642)
T PHA03281        299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQ  378 (642)
T ss_pred             eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEEe
Confidence            7999999999999999998877675555 556666654311 1122222211          123467899998888765


Q ss_pred             ee--CCC---eEEEeeC
Q psy16852        433 GR--PTP---SICWYRG  444 (579)
Q Consensus       433 g~--p~~---~v~W~~~  444 (579)
                      ..  ..+   ++.|++-
T Consensus       379 s~ihD~pFsleI~Wyy~  395 (642)
T PHA03281        379 YKIHDAPFDLLLEWLYV  395 (642)
T ss_pred             eeccCCCceeEEEEEEe
Confidence            33  333   8999973

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.43  E-value=2.6  Score=29.80  Aligned_cols=51  Identities=16%  Similarity=0.171  Sum_probs=31.0

Q ss_pred             CCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEE-EcCCeeeEEEEEEE
Q psy16852        240 TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV-VNEAGEARTSGSVT  297 (579)
Q Consensus       240 ~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a-~n~~g~~~~~~~~~  297 (579)
                      .+.+.|.-.+..+..       ....+........|+|.+.|.| .+..-.......+.
T Consensus        26 ~~~~~l~~~~~k~~~-------~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~   77 (80)
T PF05790_consen   26 KPSLFLENPGKKSLE-------TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL   77 (80)
T ss_dssp             CEEEEEECSSCEEEE-------ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred             ChhheeeccCccccc-------cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence            346777766554422       1234566677789999999999 55554444444433

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=89.87  E-value=4.1  Score=29.61  Aligned_cols=42  Identities=14%  Similarity=0.323  Sum_probs=27.6

Q ss_pred             CCCeeecCCCceeeecC----CCeEEEEEEEeeCCCeEEEeeCCEEc
Q psy16852        406 EAPKFTKPLKPVIAEAQ----SPATLKATVTGRPTPSICWYRGKEEI  448 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g----~~~~l~C~~~g~p~~~v~W~~~~~~l  448 (579)
                      .++.|+.+.....+...    +...|.+.+.+. ...+.|+.||..+
T Consensus         9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~   54 (89)
T PF06832_consen    9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPL   54 (89)
T ss_pred             CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEc
Confidence            35666655544333332    256777777766 5599999999999

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=89.28  E-value=2.6  Score=38.93  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=17.4

Q ss_pred             CeEEEEEEEeeCCC--eEEEeeC
Q psy16852        424 PATLKATVTGRPTP--SICWYRG  444 (579)
Q Consensus       424 ~~~l~C~~~g~p~~--~v~W~~~  444 (579)
                      .++|.|.|.|+-+.  .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999996444  7899999

>PHA03282 envelope glycoprotein E; Provisional

Probab=89.25  E-value=22  Score=34.31  Aligned_cols=29  Identities=14%  Similarity=0.067  Sum_probs=23.0

Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      +..-...-.|.+.++..+++|.|.|++.-
T Consensus       326 L~~~~n~VdL~F~nAp~saSGLYVfVl~y  354 (540)
T PHA03282        326 LGWYGHTVNLQLRDASEASGGLYVCVVYV  354 (540)
T ss_pred             ccccCCccceEecCCCcccCceEEEEEEE
Confidence            33334455899999999999999999863

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=89.11  E-value=3.8  Score=40.09  Aligned_cols=80  Identities=19%  Similarity=0.287  Sum_probs=14.0

Q ss_pred             EEEEcccCCCCCEEEEEEEEcCceeEEE-EEEEEEEecccC--CCCCe--ee----------cCCCceeeecCCCeEEEE
Q psy16852        365 KLAISEVFPENAGLYSCTAVNPVGEAVA-AATLAVEEKEES--GEAPK--FT----------KPLKPVIAEAQSPATLKA  429 (579)
Q Consensus       365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~--~~~p~--~~----------~~~~~~~~~~g~~~~l~C  429 (579)
                      .|.|.+++.+|+|.|+-.+.+..+.... .+.|.|......  ..+|.  +.          ..........|+++.|.-
T Consensus        90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~v  169 (439)
T PF02480_consen   90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLSV  169 (439)
T ss_dssp             --------------------------------------------------------SEEEEEE--SEEE--TT--EE---
T ss_pred             ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEeE
Confidence            6999999999999999999877665543 345666554332  12221  11          123334578899998888


Q ss_pred             EEEee--C-CC---eEEEeeC
Q psy16852        430 TVTGR--P-TP---SICWYRG  444 (579)
Q Consensus       430 ~~~g~--p-~~---~v~W~~~  444 (579)
                      .+...  . .+   +|.|++-
T Consensus       170 ~l~~~~~d~~~f~~~i~W~~~  190 (439)
T PF02480_consen  170 HLQSEAHDDPPFSLEIDWYYM  190 (439)
T ss_dssp             EEEEEESSS--EEEEEEEEEE
T ss_pred             EEEeccCCCCCeeEEEEEEEe
Confidence            76532  2 22   7899973

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03282 envelope glycoprotein E; Provisional

Probab=87.87  E-value=4.4  Score=38.65  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             eEEEEEcccCCCCCEEEEEEEEc
Q psy16852        363 LCKLAISEVFPENAGLYSCTAVN  385 (579)
Q Consensus       363 ~~~l~i~~~~~~d~G~Y~C~a~n  385 (579)
                      ...|.|.++...++|.|.|++.-
T Consensus       332 ~VdL~F~nAp~saSGLYVfVl~y  354 (540)
T PHA03282        332 TVNLQLRDASEASGGLYVCVVYV  354 (540)
T ss_pred             ccceEecCCCcccCceEEEEEEE
Confidence            34799999999999999999963

>PHA03189 UL14 tegument protein; Provisional

Probab=85.64  E-value=15  Score=33.03  Aligned_cols=102  Identities=17%  Similarity=0.193  Sum_probs=48.7

Q ss_pred             CceeeecCCCeEEEEEEEe--eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        415 KPVIAEAQSPATLKATVTG--RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g--~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .+..+..|+.+++.|.+-.  .|..+|.=.+--   .+...+.+..+...|.. |         ...-+|...+...+..
T Consensus        60 AP~l~pyGdrvtVpC~fp~H~WPevsIrarfCy---s~e~s~eLv~da~~G~~-l---------~ndl~~~L~~~~W~Fe  126 (348)
T PHA03189         60 APLLVPYGDRVTVPCTFPTHDWPEVSIRARFCY---SPERSRELVVDADSGGE-L---------HNDLTYRLPEASWKFE  126 (348)
T ss_pred             CccccCCCceeeeeeeecCCCCceeeEEEEEee---ccccceEEEEEcccCCE-e---------ccccceecccceeeee
Confidence            4455778999999999753  455544322210   01112222222211110 0         0011222333333333


Q ss_pred             eeCCee--EEEEeecccccceeEEEEEEeC-CeeEEEEEEE
Q psy16852        493 TDGNRS--VLLISKITRDQIGDVTCRAENV-AGSVTCTATL  530 (579)
Q Consensus       493 ~~~~~~--~l~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l  530 (579)
                      .-+...  +|++ ++..+-+|.|.|+..|. +|-...++.|
T Consensus       127 dlg~aq~ltLtF-~v~t~taG~Y~CvLrN~tHglv~~rf~i  166 (348)
T PHA03189        127 DLGAAQRLTLTF-RVSTSTAGMYECVLRNETHGLVLQRFVI  166 (348)
T ss_pred             cccceeEEEEEE-EEEecccceEEEEeccccceeeeEEeee
Confidence            333222  2444 34556699999999987 4555444444

>PHA03240 envelope glycoprotein M; Provisional

Probab=85.58  E-value=3.1  Score=34.82  Aligned_cols=104  Identities=17%  Similarity=0.254  Sum_probs=52.8

Q ss_pred             eeeecCCCeEEEEEEEeeCCCeEEEeeCCEE-c--CCCCCeeE-EEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTPSICWYRGKEE-I--LPDNGHTM-EFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~-l--~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      +.+.+|++|+|.-.---.|.-.+.|++.... +  ..+..+.+ .+++......-++.......--.|.|          
T Consensus        33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C----------  102 (258)
T PHA03240         33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYEC----------  102 (258)
T ss_pred             cccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEe----------
Confidence            4577899998876443356669999993211 1  01111111 11110000000111111122233444          


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeCCeeE----EEEEEEEEe
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENVAGSV----TCTATLSLL  533 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~----~~~~~l~v~  533 (579)
                         ..++|.|-++..+|+|+|.-.--...|..    ....+|.|+
T Consensus       103 ---~NstL~i~~vn~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~r  144 (258)
T PHA03240        103 ---HNSTLIIAHLNLSDAGEYCRKKCPPKGDCEFPTMSCFRLILR  144 (258)
T ss_pred             ---ccceEEEEEEeecCcchhhhccCCCCCCcCCCcceeeeEeee
Confidence               46679999999999999954443334432    235677764

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=85.03  E-value=51  Score=34.16  Aligned_cols=284  Identities=14%  Similarity=0.113  Sum_probs=132.7

Q ss_pred             ccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE--cCCce--e--EE
Q psy16852        118 EAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV--NTFGR--A--EC  191 (579)
Q Consensus       118 ~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--~~~~~--~--~~  191 (579)
                      ..|+.+.|.+.+.|.-...+.+.-.|..+.... .       .....+..   .+..+|.|...+.  .....  .  ..
T Consensus       303 l~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~-Y-------~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~  371 (667)
T PRK14081        303 LTDTDIELKAVAEGGKELLYRFIIKGKESEDSG-Y-------IRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKS  371 (667)
T ss_pred             ecCceEEEEEEecCCCceEEEEEECCcEEeecc-c-------cccceEEE---eeCCCceEEEEEEEEcCcCcccccceE
Confidence            469999999999876666666655554432111 0       01112222   3346788877664  22111  1  12


Q ss_pred             EEEEEEeeccccCCCCccCCCeE---eccCCceeeCCCCeEEEEEEEEccCCCeEE-E-EECCEEeccCceEEeCCeEEE
Q psy16852        192 RANLVLRKATTIDKPRVLEAPTI---VRPLQALLVPKDSTVTLEAEYTGTPTPEVK-W-FKNGKEIVSKDIETKDNVTKL  266 (579)
Q Consensus       192 ~~~~~v~~~~~~~~~~~~~~p~~---~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~-W-~~~~~~i~~~~~~~~~~~~~l  266 (579)
                      ...+.+...        ...|..   +..+.......|+++.+.+.+++.-...+. | .++|+.+....   ......+
T Consensus       372 ~v~f~i~~~--------~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~---Y~~~~~~  440 (667)
T PRK14081        372 SIDYTIEEK--------SKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKID---YGKNNWV  440 (667)
T ss_pred             EEEEEEccc--------CCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEee---cccccEE
Confidence            223333210        012221   111222345669999999999876555443 3 34777665422   2223334


Q ss_pred             EEcccCCCCCeEEEEEEE--cCCeeeE--EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEE-
Q psy16852        267 VIKQTTKKTTGKYEIRVV--NEAGEAR--TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW-  341 (579)
Q Consensus       267 ~i~~~~~~d~G~y~C~a~--n~~g~~~--~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W-  341 (579)
                      .+   .+..+|.|+-.+.  +......  ....+.+.+.+..++.+...+......-+........+.+.|.-...+.+ 
T Consensus       441 ~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~  517 (667)
T PRK14081        441 NF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYI  517 (667)
T ss_pred             EE---EECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEE
Confidence            44   3467899988774  3222211  12233334444333322222111111111111111223333332222222 


Q ss_pred             -EECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCce------eEEEEEEEEEEecccCCCCCeeec--
Q psy16852        342 -SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG------EAVAAATLAVEEKEESGEAPKFTK--  412 (579)
Q Consensus       342 -~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g------~~~~~~~l~v~~~~~~~~~p~~~~--  412 (579)
                       ..+|.-+...       +-.....+.+.   +.-+|.|+..|.-...      .+...+.+.|...     .|....  
T Consensus       518 ~~~NG~~v~~t-------~Ys~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~-----~pi~nt~~  582 (667)
T PRK14081        518 LKINGHKVEET-------DYIKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA-----LPITNTKI  582 (667)
T ss_pred             EEECCEEEEEe-------eccccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCC-----CCceeeEE
Confidence             2344433111       11111134433   5778999988743222      3455667777752     222211  


Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEE
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICW  441 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W  441 (579)
                      ......+..|+.++++....|.-..-++.
T Consensus       583 ~~~~~~~~~n~~~t~~~~~~gg~~v~Yef  611 (667)
T PRK14081        583 KTSKKKFKCNEEVTFSVKSEGGKDVCYEF  611 (667)
T ss_pred             EeecceEEcCCeEEEEEEccCCCcEEEEE
Confidence            12334577788888888877665554443

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=84.50  E-value=3.2  Score=29.99  Aligned_cols=55  Identities=18%  Similarity=0.375  Sum_probs=32.9

Q ss_pred             EE-EeeeCCCeEEEEEC--CEEccCCCeEEEEECCCCe----EEEEEcccCCCCCEEEEEEEEcCce
Q psy16852        329 VV-VTGKPTPLVTWSHD--GTPMKEGKEVTIYQDTDGL----CKLAISEVFPENAGLYSCTAVNPVG  388 (579)
Q Consensus       329 ~~-~~g~p~~~i~W~~~--~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g  388 (579)
                      |. +.|.|++.|+|.-+  |..     ........+++    +.+.+-.....|.-..+|.+....-
T Consensus        27 CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~   88 (98)
T cd05890          27 CVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND   88 (98)
T ss_pred             EEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence            54 68899999999742  221     12222222332    3455555666677789999987533

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=84.25  E-value=13  Score=27.08  Aligned_cols=33  Identities=18%  Similarity=0.143  Sum_probs=22.5

Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATL  530 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  530 (579)
                      +.+.+.+....|.-.-+|.+....-..+.++.|
T Consensus        64 S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L   96 (98)
T cd05890          64 SRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL   96 (98)
T ss_pred             EEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence            337777788888888999988764444444444

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA03052 Hypothetical protein; Provisional

Probab=83.93  E-value=5.4  Score=26.58  Aligned_cols=35  Identities=11%  Similarity=0.209  Sum_probs=27.3

Q ss_pred             CceeeecCCCeEEEEEEE-e--eCCCeEEEeeCCEEcC
Q psy16852        415 KPVIAEAQSPATLKATVT-G--RPTPSICWYRGKEEIL  449 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~-g--~p~~~v~W~~~~~~l~  449 (579)
                      ....+..|..++|.|++. |  ...+.|.|.-|+..+.
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            455688899999999986 3  2345799999998873

>PHA03283 envelope glycoprotein E; Provisional

Probab=83.75  E-value=13  Score=36.39  Aligned_cols=83  Identities=17%  Similarity=0.211  Sum_probs=52.7

Q ss_pred             CEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCC--Ccee-------------cCCCceEEccCCcEE
Q psy16852         60 SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEA--PKFT-------------KPLKPVIAEAQSPAT  124 (579)
Q Consensus        60 ~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~--~~~~-------------~~~~~~~~~~g~~~~  124 (579)
                      ....|.|.+++.+++|.|+-...+..+.......|+|..++....+  +...             ..-.......|+++.
T Consensus       132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~  211 (542)
T PHA03283        132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD  211 (542)
T ss_pred             CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence            3468999999999999999999887775555566666553222111  1110             011234457899988


Q ss_pred             EEEEEEeec-----CCeEEEEEC
Q psy16852        125 LKATVTGRP-----TPSICWYRG  142 (579)
Q Consensus       125 l~C~~~~~p-----~~~i~W~~~  142 (579)
                      +.-......     ...|.||+-
T Consensus       212 lsi~l~s~~~d~~fs~~i~Wyy~  234 (542)
T PHA03283        212 LSVHLESDIGDPSFSATIDWYYM  234 (542)
T ss_pred             EeEEEeeccCCCCceEEEEEEEe
Confidence            876654322     258889873

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=80.90  E-value=2.3  Score=41.54  Aligned_cols=27  Identities=33%  Similarity=0.470  Sum_probs=0.0

Q ss_pred             EEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        264 TKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       264 ~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                      +.|.|.+++.+|+|.|+-...+..+..
T Consensus        89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~  115 (439)
T PF02480_consen   89 GGLSILNATEQDSGVYTLYVRNDSGWA  115 (439)
T ss_dssp             ---------------------------
T ss_pred             CceEEeccccccCeeEEEEecCCCCce
Confidence            569999999999999999887655443

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03286 envelope glycoprotein E; Provisional

Probab=80.50  E-value=36  Score=32.72  Aligned_cols=79  Identities=18%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             EEEEcccCCCCCEEEEEEEEcCceeEEEEE-EEEEEecccCCCCCeee--------------cCCCceeeecCCCeEEEE
Q psy16852        365 KLAISEVFPENAGLYSCTAVNPVGEAVAAA-TLAVEEKEESGEAPKFT--------------KPLKPVIAEAQSPATLKA  429 (579)
Q Consensus       365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~-~l~v~~~~~~~~~p~~~--------------~~~~~~~~~~g~~~~l~C  429 (579)
                      .|.|.+++..++|.|+-...|..|....++ .|.|...... .+|...              ..........|+++.|.-
T Consensus       128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~-r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv  206 (492)
T PHA03286        128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRA-RDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV  206 (492)
T ss_pred             ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCC-CCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence            799999999999999999999877666554 5556433111 111111              122334577899998887


Q ss_pred             EEEe--eCC---CeEEEeeC
Q psy16852        430 TVTG--RPT---PSICWYRG  444 (579)
Q Consensus       430 ~~~g--~p~---~~v~W~~~  444 (579)
                      ....  ...   .++.|++-
T Consensus       207 ~l~~~~~d~~Fsl~i~W~y~  226 (492)
T PHA03286        207 TAHLTNWAGAFSLEFRVLFL  226 (492)
T ss_pred             EEeecccCCCceEEEEEEEe
Confidence            6652  112   28999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	579
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		5e-28
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		3e-16
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		3e-23
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		5e-09
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-04
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		1e-22
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-08
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-06
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		7e-04
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		2e-21
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		4e-09
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		4e-06
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		2e-21
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		3e-09
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-19
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		1e-04
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-15
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		2e-06
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		7e-06
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-15
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		7e-11
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		1e-04
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		5e-14
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		9e-14
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		7e-06
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		1e-13
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		8e-12
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		3e-06
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		1e-13
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		4e-12
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		2e-09
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		2e-06
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		2e-13
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		3e-12
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		2e-09
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		2e-06
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		3e-13
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		4e-05
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		6e-13
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		3e-12
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		3e-12
3kld_A	384	Ptprg Cntn4 Complex Length = 384		3e-12
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-12
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-10
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-12
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-10
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-12
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-11
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-08
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		4e-11
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-08
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-11
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-09
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		1e-10
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		5e-09
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		4e-08
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		5e-09
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		4e-08
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		6e-09
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		2e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		6e-09
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		4e-08
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		2e-06
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		6e-09
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		6e-08
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		2e-06
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		1e-08
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		5e-07
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		1e-07
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		1e-06
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		1e-04
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		3e-07
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		4e-05
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		4e-07
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		5e-07
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		5e-07
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		1e-06
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		8e-05
1g1c_A	99	I1 Domain From Titin Length = 99		7e-07
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		9e-07
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		1e-06
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-06
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		2e-06
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		3e-06
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		3e-06
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		5e-06
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		6e-06
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		6e-04
2xy2_A	189	Crystal Structure Of Ncam2 Ig1-2 Length = 189		6e-06
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		6e-06
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		6e-06
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		7e-06
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-04
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		7e-06
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-04
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		9e-06
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		1e-05
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		1e-05
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		1e-05
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		3e-05
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		3e-05
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		3e-05
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		8e-04
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		4e-05
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		4e-05
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		5e-05
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		6e-05
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		6e-05
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		2e-04
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		2e-04
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-04
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-04
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		5e-04
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		2e-04
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		6e-04
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		2e-04
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		2e-04
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		3e-04
2y23_A	312	Crystal Structure Of The Myomesin Domains My9-My11		3e-04
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		3e-04
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		4e-04
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		5e-04
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		6e-04
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		7e-04
3rbs_A	207	Crystal Structure Of The Myomesin Domains 10 And 11		7e-04
2wv3_A	190	Neuroplastin-55 Binds To And Signals Through The Fi		8e-04
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		9e-04

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 215/537 (40%), Gaps = 75/537 (13%)
Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
           L P F  K++ V      P  F C++ G     ++W KDG  L    +   + + +V+TL
Sbjct: 100 LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATL 159
Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV---IAEAQS 121
           +I+   +  +G Y C A+N  G A+ SA L + E     E P F   LKPV   +A  +S
Sbjct: 160 QILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH----EVPPFFD-LKPVSVDLALGES 214
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
             T K  VTG     I W +   EI P   + M     T    L++ + T  D   Y+  
Sbjct: 215 -GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA--TLTVLKVTKGDAGQYTCY 271
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ-ALLVPKDSTVTLEAEYTGTPT 240
           A N  G+  C A L            V E P  ++ L+ + +V +D     E +  G+P 
Sbjct: 272 ASNVAGKDSCSAQL-----------GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE 320
Query: 241 PEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
            +V W+K+  EI       +   ++V  L +   + + +G Y     N AG A +S S+ 
Sbjct: 321 IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 380
Query: 298 ITVAEAETVMMDVRVESHPTASFQWF-IHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
           +            R + HP  + +   +H E   + G P   V+W  D   ++ GK+  I
Sbjct: 381 VKEPPV------FRKKPHPVETLKGADVHLE-CELQGTPPFQVSWHKDKRELRSGKKYKI 433
Query: 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKPLKP 416
             + + L  + I  V   + G Y C A N                      P+F K L  
Sbjct: 434 MSE-NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA------PPRFVKKLSD 486
Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
           +         L+AT+ G    S+ W++ K EI+ ++ +            +S SE     
Sbjct: 487 ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIW----------ISYSE----- 531
Query: 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
                              N + L  S+      G  TC+ +N AG+  C ATLS+L
Sbjct: 532 -------------------NIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 143/379 (37%), Gaps = 69/379 (18%)
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK---DIETKDNVTK 265
           +E P  + PL+ +       +TL+ +  GTP   + W+K   ++ S     ++ K+NV  
Sbjct: 3   MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH 325
           LVI +      G+Y  +  N  G   +S  + I   +          + H T  F     
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGF----- 117
Query: 326 SEPVV----VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
             PV     + G     V+W  DG  +K+   +        +  L I +    + G Y+C
Sbjct: 118 --PVAFECRINGSEPLQVSWYKDGELLKDDANLQT-SFIHNVATLQILQTDQSHVGQYNC 174
Query: 382 TAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKPLKPV---IAEAQSPATLKATVTGRPTPS 438
           +A NP                   E P F   LKPV   +A  +S  T K  VTG     
Sbjct: 175 SASNPLGTASSSAKLTLSEH----EVPPFFD-LKPVSVDLALGES-GTFKCHVTGTAPIK 228
Query: 439 ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS 498
           I W +   EI P   + M           ++ E                        N +
Sbjct: 229 ITWAKDNREIRPGGNYKM-----------TLVE------------------------NTA 253
Query: 499 VLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVM- 557
            L + K+T+   G  TC A NVAG  +C+A L          V E PRFIK  E ++++ 
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG---------VQEPPRFIKKLEPSRIVK 304
Query: 558 DGQSVLFTAQVGYSERLEI 576
             +   +  ++G S  +++
Sbjct: 305 QDEHTRYECKIGGSPEIKV 323

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 136/300 (45%), Gaps = 26/300 (8%)
Query: 5   LAPRFIEKIQPVVSHQE--QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
           +AP F + ++PV       +   F C V G     +TW KD  E+    +Y +T VE+ +
Sbjct: 3   MAPPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV-IAEAQS 121
           TL ++  TK D G YTC A+N+ G  +CSA L V       E P+F K L+P  I +   
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------EPPRFIKKLEPSRIVKQDE 115
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
               +  + G P   + WY+ + EI   +   M F  +    VL +   + +D   Y+ +
Sbjct: 116 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA--VLEMYNLSVEDSGDYTCE 173
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
           A N  G A    +L           +V E P   +    +   K + V LE E  GTP  
Sbjct: 174 AHNAAGSASSSTSL-----------KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPF 222
Query: 242 EVKWFKNGKEIVSK---DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           +V W K+ +E+ S     I +++ +T + I        G+Y+ +  N+ G     GS+T+
Sbjct: 223 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 118/289 (40%), Gaps = 31/289 (10%)
Query: 105 APKFTKPLKPV---IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           AP F   LKPV   +A  +S  T K  VTG     I W +   EI P   + M     T 
Sbjct: 4   APPFFD-LKPVSVDLALGES-GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ-A 220
              L++ + T  D   Y+  A N  G+  C A L            V E P  ++ L+ +
Sbjct: 62  --TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL-----------GVQEPPRFIKKLEPS 108
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTG 277
            +V +D     E +  G+P  +V W+K+  EI       +   ++V  L +   + + +G
Sbjct: 109 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 168
Query: 278 KYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWF-IHSEPVVVTGKPT 336
            Y     N A     S S ++ V E        R + HP  + +   +H E   + G P 
Sbjct: 169 DYTCEAHNAA--GSASSSTSLKVKEPPV----FRKKPHPVETLKGADVHLE-CELQGTPP 221
Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
             V+W  D   ++ GK+  I  + + L  + I  V   + G Y C A N
Sbjct: 222 FQVSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASN 269

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 112/307 (36%), Gaps = 52/307 (16%)
Query: 230 TLEAEYTGTPTPEVKWFKNGKEIV---SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNE 286
           T +   TGT   ++ W K+ +EI    +  +   +N   L + + TK   G+Y     N 
Sbjct: 24  TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 83
Query: 287 AGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSE-PVVVTGKPTPLVTWSHDG 345
           AG  + S S  + V E    +  +     P+   +   H+     + G P   V W  D 
Sbjct: 84  AG--KDSCSAQLGVQEPPRFIKKLE----PSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 137
Query: 346 TPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSG 405
           T ++E  +  +    + +  L +  +  E++G Y+C A N                    
Sbjct: 138 TEIQESSKFRM-SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK------ 190
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
           E P F K   PV     +   L+  + G P   + W++ K E+                 
Sbjct: 191 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL----------------- 233
Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
                              S  + KIM++   + + I  +    IG+  C+A N  GS T
Sbjct: 234 ------------------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYT 275
Query: 526 CTATLSL 532
           C  +++L
Sbjct: 276 CVGSITL 282

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 50/174 (28%)
Query: 407 APKFTKPLKPV---IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           AP F   LKPV   +A  +S  T K  VTG     I W +   EI P   + M       
Sbjct: 4   APPFFD-LKPVSVDLALGES-GTFKCHVTGTAPIKITWAKDNREIRPGGNYKM------- 54
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
               ++ E                        N + L + K+T+   G  TC A NVAG 
Sbjct: 55  ----TLVE------------------------NTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 524 VTCTATLSLLPESEVTDVMESPRFIKTPETAKVM-DGQSVLFTAQVGYSERLEI 576
            +C+A L          V E PRFIK  E ++++   +   +  ++G S  +++
Sbjct: 87  DSCSAQLG---------VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 135/300 (45%), Gaps = 26/300 (8%)
Query: 5   LAPRFIEKIQPVVSHQE--QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
           +AP F + ++PV       +   F C V G     +TW KD  E+    +Y +T VE+ +
Sbjct: 3   MAPPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV-IAEAQS 121
           TL ++  TK D G YTC A+N+ G  +CSA L V         P+F K L+P  I +   
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------APPRFIKKLEPSRIVKQDE 115
Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
               +  + G P   + WY+ + EI   +   M F  +    VL +   + +D   Y+ +
Sbjct: 116 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA--VLEMYNLSVEDSGDYTCE 173
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
           A N  G A    +L           +V E P   +    +   K + V LE E  GTP  
Sbjct: 174 AHNAAGSASSSTSL-----------KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPF 222
Query: 242 EVKWFKNGKEIVSK---DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           +V W K+ +E+ S     I +++ +T + I        G+Y+ +  N+ G     GS+T+
Sbjct: 223 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 117/289 (40%), Gaps = 31/289 (10%)
Query: 105 APKFTKPLKPV---IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           AP F   LKPV   +A  +S  T K  VTG     I W +   EI P   + M     T 
Sbjct: 4   APPFFD-LKPVSVDLALGES-GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ-A 220
              L++ + T  D   Y+  A N  G+  C A L            V   P  ++ L+ +
Sbjct: 62  --TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL-----------GVQAPPRFIKKLEPS 108
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTG 277
            +V +D     E +  G+P  +V W+K+  EI       +   ++V  L +   + + +G
Sbjct: 109 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 168
Query: 278 KYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWF-IHSEPVVVTGKPT 336
            Y     N A     S S ++ V E        R + HP  + +   +H E   + G P 
Sbjct: 169 DYTCEAHNAA--GSASSSTSLKVKEPPV----FRKKPHPVETLKGADVHLE-CELQGTPP 221
Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
             V+W  D   ++ GK+  I  + + L  + I  V   + G Y C A N
Sbjct: 222 FQVSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASN 269

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 110/310 (35%), Gaps = 58/310 (18%)
Query: 230 TLEAEYTGTPTPEVKWFKNGKEIV---SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNE 286
           T +   TGT   ++ W K+ +EI    +  +   +N   L + + TK   G+Y     N 
Sbjct: 24  TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 83
Query: 287 AGEARTSGSVTITVAEAETVMMD----VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWS 342
           AG+   S  + +         ++    V+ + H     +         + G P   V W 
Sbjct: 84  AGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECK---------IGGSPEIKVLWY 134
Query: 343 HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXX 402
            D T ++E  +  +    + +  L +  +  E++G Y+C A N                 
Sbjct: 135 KDETEIQESSKFRM-SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK--- 190
Query: 403 XSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
              E P F K   PV     +   L+  + G P   + W++ K E+              
Sbjct: 191 ---EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL-------------- 233
Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
                                 S  + KIM++   + + I  +    IG+  C+A N  G
Sbjct: 234 ---------------------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Query: 523 SVTCTATLSL 532
           S TC  +++L
Sbjct: 273 SYTCVGSITL 282

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 68/174 (39%), Gaps = 50/174 (28%)
Query: 407 APKFTKPLKPV---IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           AP F   LKPV   +A  +S  T K  VTG     I W +   EI P   + M       
Sbjct: 4   APPFFD-LKPVSVDLALGES-GTFKCHVTGTAPIKITWAKDNREIRPGGNYKM------- 54
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
               ++ E                        N + L + K+T+   G  TC A NVAG 
Sbjct: 55  ----TLVE------------------------NTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 524 VTCTATLSLLPESEVTDVMESPRFIKTPETAKVM-DGQSVLFTAQVGYSERLEI 576
            +C+A L          V   PRFIK  E ++++   +   +  ++G S  +++
Sbjct: 87  DSCSAQLG---------VQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 23/188 (12%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK-----DIETKDNVT 264
           +APT  +PLQ+++V + ST T EA  +G P PEV WF++G+ I +       I   D   
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV-------MMDVRVESHPT 317
           KL I   TK  +G+Y ++  N +G+A ++  + +   +AET        +  + V     
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV---KAETAPPNFVQRLQSMTVRQGSQ 120
Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAG 377
              Q       V VTG PTP+V +  DG  ++   +  I Q+ D L  L I+E +PE++G
Sbjct: 121 VRLQ-------VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD-LYSLLIAEAYPEDSG 172
Query: 378 LYSCTAVN 385
            YS  A N
Sbjct: 173 TYSVNATN 180

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 331 VTGKPTPLVTWSHDG----TPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
           ++G P P V+W  DG    T    G +++    +DG  KL I  V   N+G YS  A N 
Sbjct: 29  ISGFPVPEVSWFRDGQVISTSTLPGVQISF---SDGRAKLTIPAVTKANSGRYSLKATNG 85
Query: 387 XXXXXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
                                P F + L+ +     S   L+  VTG PTP + +YR   
Sbjct: 86  SGQATSTAELLVKAETA---PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA 142
Query: 447 EILPDNGHTMEFNPTT-GECV-LSISEATPQDEAVYSVKASST 487
           EI      +++F  +  G+   L I+EA P+D   YSV A+++
Sbjct: 143 EIQ----SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
           +AP FT+PL+ V+    S AT +A ++G P P + W+R  + I       ++ + + G  
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 466 VLSISEATPQDEAVYSVKASS 486
            L+I   T  +   YS+KA++
Sbjct: 64  KLTIPAVTKANSGRYSLKATN 84

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 23/188 (12%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK-----DIETKDNVT 264
           +APT  +PLQ+++V + ST T EA  +G P PEV WF++G+ I +       I   D   
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV-------MMDVRVESHPT 317
           KL I   TK  +G+Y ++  N +G+A ++  + +   +AET        +  + V     
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV---KAETAPPNFVQRLQSMTVRQGSQ 120
Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAG 377
              Q       V VTG PTP+V +  DG  ++   +  I Q+ D L  L I+E +PE++G
Sbjct: 121 VRLQ-------VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD-LYSLLIAEAYPEDSG 172
Query: 378 LYSCTAVN 385
            YS  A N
Sbjct: 173 TYSVNATN 180

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 19/186 (10%)
Query: 331 VTGKPTPLVTWSHDG----TPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
           ++G P P V+W  DG    T    G +++    +DG  KL I  V   N+G YS  A N 
Sbjct: 29  ISGFPVPEVSWFRDGQVISTSTLPGVQISF---SDGRAKLTIPAVTKANSGRYSLKATNG 85
Query: 387 XXXXXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
                                P F + L+ +     S   L+  VTG PTP + +YR   
Sbjct: 86  SGQATSTAELLVKAETA---PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA 142
Query: 447 EILPDNGHTMEFNPTT-GECV-LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504
           EI      +++F  +  G+   L I+EA P+D   YSV A+++  +  +      LL+  
Sbjct: 143 EIQ----SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAE---LLVQG 195
Query: 505 ITRDQI 510
            TR++ 
Sbjct: 196 ETREEF 201

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 121/292 (41%), Gaps = 16/292 (5%)
Query: 8   RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEII 67
           RF+ + + + +      L  C+V G P+PT+ WQK+  +L+         V     L+I 
Sbjct: 123 RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQIS 182
Query: 68  NPTKEDIGVYTCKATNIGGVATCS-ANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLK 126
                D GVY C A N     T + A + +L          F +    VIA     A L+
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLE 242
Query: 127 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186
             V+G P PS  W RG+E I      + +++   G  +L IS  T  D   Y+   V T+
Sbjct: 243 CCVSGYPPPSFTWLRGEEVI---QLRSKKYSLLGGSNLL-ISNVTDDDSGTYT--CVVTY 296
Query: 187 GRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWF 246
                 A+  L   T +  P  L  P+ +   +++       +  E   +G P P V W 
Sbjct: 297 KNENISASAEL---TVLVPPWFLNHPSNLYAYESM------DIEFECAVSGKPVPTVNWM 347
Query: 247 KNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           KNG  ++  D       + L I    K   G Y+    NEAG A++S  + +
Sbjct: 348 KNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 331 VTGKPTPLVTWS---HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPX 387
           V G P P + W     D  P+     V +         L IS + P ++G+Y C+A NP 
Sbjct: 145 VIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG----ALQISRLQPGDSGVYRCSARNPA 200
Query: 388 XXXXXXXXXXXXXXXXS-GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
                                  F +    VIA     A L+  V+G P PS  W RG+E
Sbjct: 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEE 260
Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501
            I      + +++   G  +L IS  T  D   Y+   +     I      +VL+
Sbjct: 261 VI---QLRSKKYSLLGGSNLL-ISNVTDDDSGTYTCVVTYKNENISASAELTVLV 311

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 89/192 (46%), Gaps = 16/192 (8%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           SGEAP   K +K V  +    A L   + GRP P I WYR  +E++    + M  +  T 
Sbjct: 4   SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT- 62
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
              L++     +DE VY+  A N  G  E  + L+L +AT    P          PL+  
Sbjct: 63  -HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL-QATPQFHPGY--------PLKEK 112
Query: 222 LVPK-DSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKT-T 276
                 ST+ L   Y G P P + WF   K + + +   IE  ++ T LV+K   +KT  
Sbjct: 113 YYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHA 172
Query: 277 GKYEIRVVNEAG 288
           GKY++++ N  G
Sbjct: 173 GKYKVQLSNVFG 184

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 8/180 (4%)
Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK---DIETKDNVTKL 266
           EAP I + ++ +         L  +  G P P++KW++ GKE++      + +      L
Sbjct: 6   EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
            +    ++  G Y     NE GE  TS  + +           ++ + +        +H 
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH- 124
Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE-NAGLYSCTAVN 385
             V+  G+P P +TW H    ++  + +TI ++T+    L +  V  + +AG Y     N
Sbjct: 125 --VMYIGRPVPAMTWFHGQKLLQNSENITI-ENTEHYTHLVMKNVQRKTHAGKYKVQLSN 181

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           SGEAP   K +K V  +    A L   + GRP P I WYR  +E++    + M  +  T 
Sbjct: 4   SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT- 62
Query: 464 ECVLSISEATPQDEAVYSVKASS 486
              L++     +DE VY+  A++
Sbjct: 63  -HTLTVMTEEQEDEGVYTCIATN 84

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 125/299 (41%), Gaps = 23/299 (7%)
Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           PRFI++ +  +      A F C+  G P P +TW K G ++++     I   ES   +  
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 67  INP--TKEDIGVYTCKATNIGGVATCSANLIVLEKEE--SGEAPKFTKPLKPVIAEAQSP 122
           I P  T  D  VY C A N  G  T  A L VL +++  SG  P      +  + E    
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRT 125
Query: 123 ATLKATVTGRPTPSICWYRGKEEILP--DNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
           AT+    +G P P I W++    + P   NG   +    +G   +  SE T  D+  Y  
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLR--SGALQIESSEET--DQGKYEC 181
Query: 181 KAVNTFG-RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP 239
            A N+ G R    ANL +R      +  +L       P+   ++P    V +     G+P
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSIL-------PMSHEIMP-GGNVNITCVAVGSP 233
Query: 240 TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
            P VKW +  +++  +D      V + V++ T  K +  Y    ++  G       +T+
Sbjct: 234 MPYVKWMQGAEDLTPEDDMP---VGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITV 289

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 30/292 (10%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           E P+F K  K  I  +   A+     TG P P + W +  +++      T+EF+ + G  
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
           +      TP+DE VY   A N+ G     A L + +   +        P I    Q  +V
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS----GFPNIDMGPQLKVV 120
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTG 277
            +  T T+    +G P PE+ WF   K+ +  D    +   K      L I+ + +   G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWF---KDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 278 KYEIRVVNEAGEARTSGS---VTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK 334
           KYE    N AG   +S +   V +        ++ +  E  P  +          V  G 
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNIT-----CVAVGS 232
Query: 335 PTPLVTWSHDGTPMKEGKEVTIYQDTD-GLCKLAISEVFPENAGLYSCTAVN 385
           P P V W      M+  +++T   D   G   L +++V  +++  Y+C A++
Sbjct: 233 PMPYVKW------MQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMS 276

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 103/274 (37%), Gaps = 45/274 (16%)
Query: 234 EYTGTPTPEVKWFKNGKEIVSKDIET--KDNVTKLVIK---QTTKKTTGKYEIRVVNEAG 288
           + TG P P V W K GK++ S+  ET   D     V++     T +    YE    N  G
Sbjct: 29  QATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVG 88
Query: 289 EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV------------TGKPT 336
           E        ITV    TV+   R +  P+      +  +  VV            +G P 
Sbjct: 89  E--------ITVHAKLTVL---REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 337 PLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXX 395
           P +TW  D  P+        I Q   G  ++  SE    + G Y C A N          
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE--ETDQGKYECVATN--SAGVRYSS 193
Query: 396 XXXXXXXXSGEAPKFTKPLKPVIAEAQSPATLKAT--VTGRPTPSICWYRGKEEILPDNG 453
                      AP+F+  + P+  E      +  T    G P P + W +G E++ P++ 
Sbjct: 194 PANLYVRVQNVAPRFS--ILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD 251
Query: 454 HTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
             +      G  VL +++   +D A Y+  A S+
Sbjct: 252 MPV------GRNVLELTDV--KDSANYTCVAMSS 277

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 112/281 (39%), Gaps = 24/281 (8%)
Query: 25  LFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84
            FTC   G P     +   G ++ +T+  ++      S L I N   ED G+Y C+AT+ 
Sbjct: 23  FFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82
Query: 85  GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 144
            G  T  A +++    E  +   F + + P   +    A +   V+  P P++ W    E
Sbjct: 83  KG-QTQEATVVL----EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 137
Query: 145 EI--LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT 202
           E+  + DN   M          L I      DE +Y  +     GR E R  +  R    
Sbjct: 138 EVTTISDNRFAM-----LANNNLQILNINKSDEGIYRCE-----GRVEARGEIDFRDIIV 187
Query: 203 IDKPRVLEAPTIVRPLQAL--LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-IET 259
           I    V   P I  P ++      +   +T     +G+P P + WF+NGK I   +    
Sbjct: 188 I----VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL 243
Query: 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           K + T+L ++       G Y  R  N+AGE      + + V
Sbjct: 244 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 145/371 (39%), Gaps = 38/371 (10%)
Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
           +PA+FTC+  G+P+ T++W KDG  +  +E          S L I +  KED G+Y C  
Sbjct: 359 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFV 408
Query: 82  TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW-Y 140
            N    A  SA L +  +    + P   +  +    E      LK    G PTP I W  
Sbjct: 409 RNDRESAEASAELKLGGRF---DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL 465
Query: 141 RGKEEILPDNGHTMEFNPTTGECV--LSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
            GK+    D     ++    G+ V  L+I+     D  +Y   A +  G AE  A L   
Sbjct: 466 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL--- 522
Query: 199 KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-VSKDI 257
                    V   P I R ++   +    T+ +     G P   + W ++ + + +++  
Sbjct: 523 --------NVYGLPYI-RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQ 573
Query: 258 ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG-EARTSGSVTITVAEAETVMMDVRVESHP 316
           +   N T ++           Y     N+ G  AR S  V + V      ++    E  P
Sbjct: 574 KVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR---IIPFAFEEGP 630
Query: 317 TASFQWF-IHSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
               Q+  +H     V G   PL + W+ DG  + E   +T  +       L I  V   
Sbjct: 631 AQVGQYLTLHCS---VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS 687
Query: 375 NAGLYSCTAVN 385
           +AG ++C A N
Sbjct: 688 HAGNFTCHARN 698

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 92/272 (33%), Gaps = 36/272 (13%)
Query: 227 STVTLEAEYTGTPTPEVKWFK-----NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
           ST+ L     G P P  +W+K       K+ V  +   K     L+IK    + +GKY  
Sbjct: 264 STMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 323
Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT----GKPTP 337
            V N  G       +T+T   +  +         PT +  +     P V T    G P  
Sbjct: 324 VVNNSVGGESVETVLTVTAPLSAKI-------DPPTQTVDF---GRPAVFTCQYTGNPIK 373
Query: 338 LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXX 397
            V+W  DG  +   + V           L I  V  E+ G+Y C   N            
Sbjct: 374 TVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQCFVRNDRESAEASAELK 422
Query: 398 XXXXXXSGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW-YRGKEEILPDNGHTM 456
                   + P   +  +    E      LK    G PTP I W   GK+    D     
Sbjct: 423 LGGRF---DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVG 479
Query: 457 EFNPTTGECV--LSISEATPQDEAVYSVKASS 486
           ++    G+ V  L+I+     D  +Y   A S
Sbjct: 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKS 511

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 6/214 (2%)
Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVE-SVS 62
           +AP F E+++ +    +  A   CKV GHP P + W + G E+ A    Y I   +    
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
            L I + T +D  VY  +ATN GG  + +A+L V E       PK  + +  V A     
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEV-EVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
            ++K   +G+P P I W +G ++++ +NGH       +   ++  +    +D   Y V A
Sbjct: 122 VSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR 216
            N FG  +    L +  A   D PR ++   + R
Sbjct: 181 KNRFGIDQKTVELDV--ADVPDPPRGVKVSDVSR 212

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 162
           AP F + L+ +    QS ATL   VTG P P + WYR  +EI+ D       EF    G 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 61
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
             L I+  T  D  VY V+A N  G     A+L +     I  P+ LE    V  L+   
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG-- 119
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD 256
                 V+++  ++G P P + W K G++++  +
Sbjct: 120 ----EVVSIKIPFSGKPDPVITWQK-GQDLIDNN 148

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 464
           AP F + L+ +    QS ATL   VTG P P + WYR  +EI+ D       EF    G 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 61
Query: 465 CVLSISEATPQDEAVYSVKASS 486
             L I+  T  D  VY V+A++
Sbjct: 62  HQLIIASVTDDDATVYQVRATN 83

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 4/185 (2%)
Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVE-SVS 62
           +AP F E+++ +    +  A   CKV GHP P + W + G E+ A    Y I   +    
Sbjct: 1   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 60
Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
            L I + T +D  VY  +ATN GG  + +A+L V E       PK  + +  V A     
Sbjct: 61  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEV-EVPAKIHLPKTLEGMGAVHALRGEV 119
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
            ++K   +G+P P I W +G ++++ +NGH       +   ++  +    +D   Y V A
Sbjct: 120 VSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 178
Query: 183 VNTFG 187
            N FG
Sbjct: 179 KNRFG 183

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 162
           AP F + L+ +    QS ATL   VTG P P + WYR  +EI+ D       EF    G 
Sbjct: 2   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 59
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
             L I+  T  D  VY V+A N  G     A+L +     I  P+ LE    V  L+   
Sbjct: 60  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG-- 117
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK 265
                 V+++  ++G P P + W K G++++  +   +  VT+
Sbjct: 118 ----EVVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVTR 155

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI-----ETKDNVTK 265
           AP     L+ L V   S  TL  + TG P P VKW++ GKEI++  +     E K    +
Sbjct: 2   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTA-SFQWFI 324
           L+I   T      Y++R  N+ G    SG+ ++ V     + +   +E      + +  +
Sbjct: 62  LIIASVTDDDATVYQVRATNQGGS--VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 119
Query: 325 HSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI-----SEVFP-----E 374
            S  +  +GKP P++TW       ++G+++    D +G  ++ +     S VFP     +
Sbjct: 120 VSIKIPFSGKPDPVITW-------QKGQDLI---DNNGHYQVIVTRSFTSLVFPNGVERK 169
Query: 375 NAGLYSCTAVN 385
           +AG Y   A N
Sbjct: 170 DAGFYVVCAKN 180

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 464
           AP F + L+ +    QS ATL   VTG P P + WYR  +EI+ D       EF    G 
Sbjct: 2   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 59
Query: 465 CVLSISEATPQDEAVYSVKASS 486
             L I+  T  D  VY V+A++
Sbjct: 60  HQLIIASVTDDDATVYQVRATN 81

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 4/185 (2%)
Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVE-SVS 62
           +AP F E+++ +    +  A   CKV GHP P + W + G E+ A    Y I   +    
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
            L I + T +D  VY  +ATN GG  + +A+L V E       PK  + +  V A     
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEV-EVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
            ++K   +G+P P I W +G ++++ +NGH       +   ++  +    +D   Y V A
Sbjct: 122 VSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 183 VNTFG 187
            N FG
Sbjct: 181 KNRFG 185

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 162
           AP F + L+ +    QS ATL   VTG P P + WYR  +EI+ D       EF    G 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 61
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
             L I+  T  D  VY V+A N  G     A+L +     I  P+ LE    V  L+   
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG-- 119
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK 265
                 V+++  ++G P P + W K G++++  +   +  VT+
Sbjct: 120 ----EVVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVTR 157

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI-----ETKDNVTK 265
           AP     L+ L V   S  TL  + TG P P VKW++ GKEI++  +     E K    +
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTA-SFQWFI 324
           L+I   T      Y++R  N+ G    SG+ ++ V     + +   +E      + +  +
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGS--VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 325 HSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI-----SEVFP-----E 374
            S  +  +GKP P++TW       ++G+++    D +G  ++ +     S VFP     +
Sbjct: 122 VSIKIPFSGKPDPVITW-------QKGQDLI---DNNGHYQVIVTRSFTSLVFPNGVERK 171
Query: 375 NAGLYSCTAVN 385
           +AG Y   A N
Sbjct: 172 DAGFYVVCAKN 182

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGE 464
           AP F + L+ +    QS ATL   VTG P P + WYR  +EI+ D       EF    G 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK--GGY 61
Query: 465 CVLSISEATPQDEAVYSVKASS 486
             L I+  T  D  VY V+A++
Sbjct: 62  HQLIIASVTDDDATVYQVRATN 83

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 135/332 (40%), Gaps = 41/332 (12%)
Query: 25  LFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPT----KEDIGVYTCK 80
           L  C+ +G+P P+  W ++    +  +   ++      TL I   +    +E  G Y C 
Sbjct: 36  LIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCF 95
Query: 81  ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICW 139
           A N  G A   +N I L+  +S   PK  + L PV+ +  +P TL+     G P+P I W
Sbjct: 96  ARNKFGTAL--SNRIRLQVSKSPLWPK--ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFW 151
Query: 140 YRGKEEILPDN-----GHTMEFNPTTGECVLSISEATPQD-EAVYSVKAVNTFGRAECRA 193
                E +  +     GH  +         L  S    QD +  YS  A   F     + 
Sbjct: 152 MSSSMEPITQDKRVSQGHNGD---------LYFSNVMLQDMQTDYSCNARFHFTHTIQQK 202
Query: 194 NLVLRKATTIDKPRVLEAPTIVRP---LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK 250
           N    K  T  +      P+ + P     + +V +   + LE   +G PTP++ W+K G 
Sbjct: 203 NPFTLKVLTT-RGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 261
Query: 251 EIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV-------------T 297
           ++ S   + ++    L I   +++ +G+Y     N+ G  R + SV              
Sbjct: 262 DLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKN 321
Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPV 329
           + +A  E   +  R   +P  + QW ++ EP+
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPL 353

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 18/176 (10%)
Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
           L+   +G PTP I WY+   ++  D      FN       L I+  + +D   Y   A N
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK-----ALRITNVSEEDSGEYFCLASN 296
Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
             G         +R   ++   RV  AP  +   + L++       L     G P P V+
Sbjct: 297 KMGS--------IRHTISV---RVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ 345
Query: 245 WFKNGKEIVSKDIETKDNVTK--LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           W  NG+ + S        V    ++ + T   +   Y+    NE G    +  V++
Sbjct: 346 WMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 147/377 (38%), Gaps = 43/377 (11%)
Query: 21  EQPALFTCKVEGHPLPTMTWQKDGTELH---ATEHYLITTVESVSTLEIINPTK-EDIGV 76
           E+  L  C+    P  T  W+ +GTE+     + H L+        L I+NPTK +D GV
Sbjct: 21  EEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVG-----GNLVIMNPTKAQDAGV 75
Query: 77  YTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLK-PVIAEAQSPATLKATVTGR-P 133
           Y C A+N +G V +  A L        G   +F+K  + PV A       L        P
Sbjct: 76  YQCLASNPVGTVVSREAIL------RFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYP 129
Query: 134 TPSICWYRGK-EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192
             S  W   +    +P +G     + TTG   L I+     D   YS  A +    +   
Sbjct: 130 GLSYRWLLNEFPNFIPTDGRHF-VSQTTGN--LYIARTNASDLGNYSCLATSHMDFSTKS 186
Query: 193 ANLVLRKATTIDKPRVLEAPTIVRPLQA---LLVPKDSTVTLEAEYTGTPTPEVKWFK-N 248
                 +     +   L AP+I     A    LV +   VTLE    G P P +KW K +
Sbjct: 187 VFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQ--VTLECFAFGNPVPRIKWRKVD 244
Query: 249 GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM 308
           G   +S    T +    L I   + +  G YE    N  G     G + I  A+ E + +
Sbjct: 245 GS--LSPQWTTAE--PTLQIPSVSFEDEGTYECEAENSKGRDTVQGRI-IVQAQPEWLKV 299
Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
               E+   ++ +W          GKP P V W  +G P+     V +        KL++
Sbjct: 300 ISDTEADIGSNLRW-----GCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSL 354
Query: 369 SEVFPENAGLYSCTAVN 385
                E++G+Y C A N
Sbjct: 355 -----EDSGMYQCVAEN 366

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 142/379 (37%), Gaps = 47/379 (12%)
Query: 21  EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK-EDIGVYTC 79
           E+    TC+   +P  T  W+ +GTEL          V     L I NP K +D G Y C
Sbjct: 22  EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV--AGDLVISNPVKAKDAGSYQC 79
Query: 80  KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL----KATVTGRPTP 135
            ATN  G               S EA      L+   AE + P  +        T  P P
Sbjct: 80  VATNARGTVV------------SREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPP 127
Query: 136 -----SICWYRGK-EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA 189
                S  W   +    +P +G     + TTG   ++ +EA+  D   YS  A +     
Sbjct: 128 HYPALSYRWLLNEFPNFIPADGRRF-VSQTTGNLYIAKTEAS--DLGNYSCFATSHIDFI 184
Query: 190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQA-LLVPKDSTVTLEAEYTGTPTPEVKWFKN 248
                    + +   +     AP+I     A         VTLE    G P P++KW K 
Sbjct: 185 TKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL 244
Query: 249 GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM 308
                SK + ++     L I+    +  G YE    N  G     G + I    A+   +
Sbjct: 245 DGSQTSKWLSSE---PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII---HAQPDWL 298
Query: 309 DV--RVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
           DV    E+   +  +W       V +GKP P V W  DG P+     + +   + G  +L
Sbjct: 299 DVITDTEADIGSDLRW-----SCVASGKPRPAVRWLRDGQPLASQNRIEV---SGG--EL 348
Query: 367 AISEVFPENAGLYSCTAVN 385
             S++  E++G+Y C A N
Sbjct: 349 RFSKLVLEDSGMYQCVAEN 367

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 152/390 (38%), Gaps = 36/390 (9%)
Query: 6   APRFIEKIQPV---VSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
            P F+++   V   +  +E+    +C+V+G+P P + W+ +GT++     +  + V+   
Sbjct: 4   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-- 61
Query: 63  TLEIINPTK-EDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
           +L I NP K +D G Y C ATN  G + +  A L     E      + T  ++      Q
Sbjct: 62  SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVR----RGQ 117
Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
               L          S  W   +     DN   +  +  TG   L I++    D   Y+ 
Sbjct: 118 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV--SQETGN--LYIAKVEKSDVGNYTC 173
Query: 181 KAVNTFGRAECRAN---LVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237
              NT    +       L+LR    + +    E    V+  + +   K +TV LE    G
Sbjct: 174 VVTNTVTNHKVLGPPTPLILRNDGVMGE---YEPKIEVQFPETVPAEKGTTVKLECFALG 230
Query: 238 TPTPEVKWFK-NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296
            P P + W + +GK I  K    K N   L I    ++  G YE    N  G+    G +
Sbjct: 231 NPVPTILWRRADGKPIARKARRHKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 289
Query: 297 TITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
           T         ++ D+ V    +  ++           G+P P   W  +G P+     + 
Sbjct: 290 TFYAQPNWVQIINDIHVAMEESVFWE-------CKANGRPKPTYRWLKNGDPLLTRDRIQ 342
Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
           I Q T     L I+ V   +AG+Y C A N
Sbjct: 343 IEQGT-----LNITIVNLSDAGMYQCVAEN 367

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 152/390 (38%), Gaps = 36/390 (9%)
Query: 6   APRFIEKIQPV---VSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
            P F+++   V   +  +E+    +C+V+G+P P + W+ +GT++     +  + V+   
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-- 62
Query: 63  TLEIINPTK-EDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
           +L I NP K +D G Y C ATN  G + +  A L     E      + T  ++      Q
Sbjct: 63  SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVR----RGQ 118
Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
               L          S  W   +     DN   +  +  TG   L I++    D   Y+ 
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV--SQETGN--LYIAKVEKSDVGNYTC 174
Query: 181 KAVNTFGRAECRAN---LVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237
              NT    +       L+LR    + +    E    V+  + +   K +TV LE    G
Sbjct: 175 VVTNTVTNHKVLGPPTPLILRNDGVMGE---YEPKIEVQFPETVPAEKGTTVKLECFALG 231
Query: 238 TPTPEVKWFK-NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296
            P P + W + +GK I  K    K N   L I    ++  G YE    N  G+    G +
Sbjct: 232 NPVPTILWRRADGKPIARKARRHKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 297 TITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
           T         ++ D+ V    +  ++           G+P P   W  +G P+     + 
Sbjct: 291 TFYAQPNWVQIINDIHVAMEESVFWE-------CKANGRPKPTYRWLKNGDPLLTRDRIQ 343
Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
           I Q T     L I+ V   +AG+Y C A N
Sbjct: 344 IEQGT-----LNITIVNLSDAGMYQCVAEN 368

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           PRFI++ +  +      A F C+  G P P +TW K G ++++     I   ES   +  
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 67  INP--TKEDIGVYTCKATNIGGVATCSANLIVLEKEE--SGEAPKFTKPLKPVIAEAQSP 122
           I P  T  D  VY C A N  G  T  A L VL +++  SG  P      +  + E    
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRT 125
Query: 123 ATLKATVTGRPTPSICWYRGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAV 177
           AT+    +G P P I W++   + LP      NG   +    +G   +  SE T  D+  
Sbjct: 126 ATMLCAASGNPDPEITWFK---DFLPVDPSASNGRIKQLR--SGALQIESSEET--DQGK 178
Query: 178 YSVKAVNTFG-RAECRANLVLR 198
           Y   A N+ G R    ANL +R
Sbjct: 179 YECVATNSAGVRYSSPANLYVR 200

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 13/191 (6%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           E P+F K  K  I  +   A+     TG P P + W +  +++      T+EF+ + G  
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
           +      TP+DE VY   A N+ G     A L + +   +  P     P I    Q  +V
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL--PSGF--PNIDMGPQLKVV 120
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTG 277
            +  T T+    +G P PE+ WF   K+ +  D    +   K      L I+ + +   G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWF---KDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 278 KYEIRVVNEAG 288
           KYE    N AG
Sbjct: 178 KYECVATNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           PRFI++ +  +      A F C+  G P P +TW K G ++++     I   ES   +  
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 67  INP--TKEDIGVYTCKATNIGGVATCSANLIVLEKEE--SGEAPKFTKPLKPVIAEAQSP 122
           I P  T  D  VY C A N  G  T  A L VL +++  SG  P      +  + E    
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRT 125
Query: 123 ATLKATVTGRPTPSICWYRGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAV 177
           AT+    +G P P I W++   + LP      NG   +    +G   +  SE T  D+  
Sbjct: 126 ATMLCAASGNPDPEITWFK---DFLPVDPSASNGRIKQLR--SGALQIESSEET--DQGK 178
Query: 178 YSVKAVNTFG-RAECRANLVLR 198
           Y   A N+ G R    ANL +R
Sbjct: 179 YECVATNSAGVRYSSPANLYVR 200

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 13/191 (6%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           E P+F K  K  I  +   A+     TG P P + W +  +++      T+EF+ + G  
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
           +      TP+DE VY   A N+ G     A L + +   +  P     P I    Q  +V
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL--PSGF--PNIDMGPQLKVV 120
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTG 277
            +  T T+    +G P PE+ WF   K+ +  D    +   K      L I+ + +   G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWF---KDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 278 KYEIRVVNEAG 288
           KYE    N AG
Sbjct: 178 KYECVATNSAG 188

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
Query: 101 ESGEAP-KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
           E+GE P +FT+        +   A+     TG P P I W +  +++       +EF+  
Sbjct: 1   ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60
Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
           +G  +      TP+DEA+Y   A N  G       L + +   I  PR    PTI    Q
Sbjct: 61  SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQI--PRGF--PTIDMGPQ 116
Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETK------DNVTKLVIKQTTK 273
             +V +  T T+    +G P PE+ WFK+   + + +   +      +++  L I+Q+ +
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE 176
Query: 274 KTTGKYEIRVVNEAG 288
              GKYE    N AG
Sbjct: 177 SDQGKYECVATNSAG 191

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 24  ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK--EDIGVYTCKA 81
           A F C+  G P P +TW K G ++ +    +I   +   ++  I P +   D  +Y C A
Sbjct: 24  ASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTA 83
Query: 82  TNIGGVATCSANLIVLEKEESGEAPKF----TKPLKPVIAEAQSPATLKATVTGRPTPSI 137
           TN  G    SA L VLE+E+    P F      P   V+ +A++ AT+     G P P I
Sbjct: 84  TNSLGEINTSAKLSVLEEEQL--PPGFPSIDMGPQLKVVEKART-ATMLCAAGGNPDPEI 140
Query: 138 CWYRGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG-RAEC 191
            W++   + LP      NG   +         L I  +   D+  Y   A N+ G R   
Sbjct: 141 SWFK---DFLPVDPATSNGRIKQLR----SGALQIESSEESDQGKYECVATNSAGTRYSA 193
Query: 192 RANLVLR 198
            ANL +R
Sbjct: 194 PANLYVR 200

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 13/172 (7%)
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
           A+     TG P P I W +  +++       +EF+   G  +        +DEA+Y   A
Sbjct: 24  ASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTA 83
Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE 242
            N+ G     A L + +   +  P     P+I    Q  +V K  T T+     G P PE
Sbjct: 84  TNSLGEINTSAKLSVLEEEQL--PPGF--PSIDMGPQLKVVEKARTATMLCAAGGNPDPE 139
Query: 243 VKWFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTGKYEIRVVNEAG 288
           + WFK+    +  D  T +   K      L I+ + +   GKYE    N AG
Sbjct: 140 ISWFKD---FLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 24  ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK--EDIGVYTCKA 81
           A F C+  G P P +TW K G ++ +    +I   +   ++  I P +   D  +Y C A
Sbjct: 25  ASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTA 84
Query: 82  TNIGGVATCSANLIVLEKEE--SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 139
           TN  G    SA L VLE+++  SG       P   V+ + ++ AT+     G P P I W
Sbjct: 85  TNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRT-ATMLCAAGGNPDPEISW 143
Query: 140 YRGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG-RAECRA 193
           ++   + LP      NG   +         L I  +   D+  Y   A N+ G R    A
Sbjct: 144 FK---DFLPVDPAASNGRIKQLR----SGALQIESSEESDQGKYECVATNSAGTRYSAPA 196
Query: 194 NLVLR 198
           NL +R
Sbjct: 197 NLYVR 201

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 15/173 (8%)
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ-DEAVYSVK 181
           A+     TG P P I W +  +++       +EF+   G  VL I     Q DEA+Y   
Sbjct: 25  ASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS-VLRIQPLRVQRDEAIYECT 83
Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
           A N+ G     A L + +   +  P     PTI    Q  +V K  T T+     G P P
Sbjct: 84  ATNSLGEINTSAKLSVLEEDQL--PSGF--PTIDMGPQLKVVEKGRTATMLCAAGGNPDP 139
Query: 242 EVKWFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTGKYEIRVVNEAG 288
           E+ WFK+    +  D    +   K      L I+ + +   GKYE    N AG
Sbjct: 140 EISWFKD---FLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 85/204 (41%), Gaps = 16/204 (7%)
Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           P FI+K    +      A F C+  G P P +TW K G ++++     I   ES   +  
Sbjct: 7   PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 67  INP--TKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEA-PKFTKPLKPVIAEAQSPA 123
           I P  T  D  +Y C A N  G  T  A L VL +++     P      +  + E    A
Sbjct: 67  IQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTA 126
Query: 124 TLKATVTGRPTPSICWYRGKEEILP-----DNGHTMEFNPTTGECVLSISEATPQDEAVY 178
           T+    +G P P I W++   + LP      NG   +    +G   +  SE T  D+  Y
Sbjct: 127 TMLCAASGNPDPEITWFK---DFLPVDPSTSNGRIKQLR--SGGLQIESSEET--DQGKY 179
Query: 179 SVKAVNTFG-RAECRANLVLRKAT 201
              A N+ G R    ANL +R  T
Sbjct: 180 ECVASNSAGVRYSSPANLYVRVGT 203

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 18/197 (9%)
Query: 101 ESGEAPK-FTKPLKPV--IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157
           E+GE+P  F K  KPV  I  +   A+     TG P P + W +  +++      T+EF+
Sbjct: 1   ETGESPPVFIK--KPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP 217
            + G  +      TP+DE +Y   A N  G     A L + +   +        P I   
Sbjct: 59  ESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPP----GFPNIDMG 114
Query: 218 LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------LVIKQT 271
            Q  +V +  T T+    +G P PE+ WF   K+ +  D  T +   K      L I+ +
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWF---KDFLPVDPSTSNGRIKQLRSGGLQIESS 171
Query: 272 TKKTTGKYEIRVVNEAG 288
            +   GKYE    N AG
Sbjct: 172 EETDQGKYECVASNSAG 188

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 149/394 (37%), Gaps = 42/394 (10%)
Query: 12  KIQP--VVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTLEIIN 68
           K QP  V+  +  P +  C +EG+      +W+KDG   +  EH      +   +L  + 
Sbjct: 10  KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE-GSLVFLR 68
Query: 69  PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT 128
           P   D G Y C A    GVA  S+ +I   K     +P  T    P+      P  L   
Sbjct: 69  PQASDEGHYQCFAETPAGVA--SSRVISFRKTYLIASPAKTHEKTPIEGR---PFQLDCV 123
Query: 129 V-TGRPTPSICWYRGKEEILPDNGHTMEFNP--TTG-ECVLSISEATPQD-EAVYSVKAV 183
           +    P P I W +      P N    +F+   T G +  L  +  T +D   +Y  K V
Sbjct: 124 LPNAYPKPLITWKKRLSGADP-NADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY--KYV 180
Query: 184 NTFGRAECRANLVLR----KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP 239
            T   A     +VL     K  T D       P      + ++        +   Y   P
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 240
Query: 240 TPEVKWFKNGKEIVS--KDIETKDNVT---KLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
                +FKNGK++    +D  T+ N T   +L+ K T  +  G Y   V N  G+ +   
Sbjct: 241 MGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH- 299
Query: 295 SVTITVAEAETVMMDVRVESHPTASF---QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
           S+ +TV  A       + E  P       Q    + P  VTG P P V WSH+  P+  G
Sbjct: 300 SLKLTVVSAP------KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG 353
Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
           +       TD    L I  V   + G Y C A N
Sbjct: 354 RATV----TD--SGLVIKGVKNGDKGYYGCRATN 381

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 19/209 (9%)
Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE---HYLITTV 58
            +  +PR IE    +V  + +PA   CKVEG P PT+ W KDG  +   E   H +    
Sbjct: 5   GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 59  ESVSTLEIINPTKE-DIGVYTCKATN-IGGVATCSANL-IVLEKEESGEAPKFTKPLKPV 115
            ++     +   KE D G Y C A N +G   +  A+L I + +++    PK T+     
Sbjct: 65  GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTR----- 119
Query: 116 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV-----LSISEA 170
           +A+ ++         G P P++ W   K+ +  D+   M F  ++   +     L IS  
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWI--KDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177
Query: 171 TPQDEAVYSVKAVNTFG-RAECRANLVLR 198
            P DE  Y   A N  G R    A L+++
Sbjct: 178 EPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 200 ATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK-----EIVS 254
           A     PR++E PT       L+V K+   TL  +  G P P ++WFK+G+     E  S
Sbjct: 4   AGQYQSPRIIEHPT------DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKS 57
Query: 255 KDIETKDNVTKLVIKQTTKK--TTGKYEIRVVNEAGEARTS-GSVTITVAEAETVM--MD 309
             ++ KD           KK    G+Y     N  G+A +   S+ I V   +  +   D
Sbjct: 58  HRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKD 117
Query: 310 VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT-----DGLC 364
            RV    TA     +   P    G P P + W  DG P+ + K ++    +     DG  
Sbjct: 118 TRVAKGETA----LLECGP--PKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG-G 170
Query: 365 KLAISEVFPENAGLYSCTAVN 385
            L IS V P + G Y C A N
Sbjct: 171 NLLISNVEPIDEGNYKCIAQN 191

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 19/209 (9%)
Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE---HYLITTV 58
            +  +PR IE    +V  + +PA   CKVEG P PT+ W KDG  +   E   H +    
Sbjct: 5   GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 59  ESVSTLEIINPTKE-DIGVYTCKATN-IGGVATCSANL-IVLEKEESGEAPKFTKPLKPV 115
            ++     +   KE D G Y C A N +G   +  A+L I + +++    PK T+     
Sbjct: 65  GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTR----- 119
Query: 116 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV-----LSISEA 170
           +A+ ++         G P P++ W   K+ +  D+   M F  ++   +     L IS  
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWI--KDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177
Query: 171 TPQDEAVYSVKAVNTFG-RAECRANLVLR 198
            P DE  Y   A N  G R    A L+++
Sbjct: 178 EPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 200 ATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK-----EIVS 254
           A     PR++E PT       L+V K+   TL  +  G P P ++WFK+G+     E  S
Sbjct: 4   AGQYQSPRIIEHPT------DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKS 57
Query: 255 KDIETKDNVTKLVIKQTTKK--TTGKYEIRVVNEAGEARTS-GSVTITVAEAETVM--MD 309
             ++ KD           KK    G+Y     N  G+A +   S+ I V   +  +   D
Sbjct: 58  HRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKD 117
Query: 310 VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT-----DGLC 364
            RV    TA     +   P    G P P + W  DG P+ + K ++    +     DG  
Sbjct: 118 TRVAKGETA----LLECGP--PKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG-G 170
Query: 365 KLAISEVFPENAGLYSCTAVN 385
            L IS V P + G Y C A N
Sbjct: 171 NLLISNVEPIDEGNYKCIAQN 191

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 17/187 (9%)
Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVESVSTL 64
           AP     ++ V +  E+ A F C VE +P P ++W ++   +   +  Y I   E+   L
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR--ENGQLL 64
Query: 65  EIINPTKEDIGVYTCKATN-IGG-VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
            I++    D G+Y C A N +GG V +C A  + ++       PK T+P   V       
Sbjct: 65  TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK-------PKITRPPINVKIIEGLK 117
Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
           A L  T  G P PS+ W +G +  L +N         +    L I     +D   Y   A
Sbjct: 118 AVLPCTTMGNPKPSVSWIKG-DSALRENSRIAVLESGS----LRIHNVQKEDAGQYRCVA 172
Query: 183 VNTFGRA 189
            N+ G A
Sbjct: 173 KNSLGTA 179

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 71/190 (37%), Gaps = 19/190 (10%)
Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI-LPDNGHTMEFNPTTGE 162
           +AP  T PL+ V A  +  AT    V   P P I W R K  I L D  +++  N   G+
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN---GQ 62
Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRA--ECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
            +L+I      D+ +Y   A N  G A   C A  V        KP++   P  V+ ++ 
Sbjct: 63  -LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM------KPKITRPPINVKIIEG 115
Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYE 280
           L         L     G P P V W K    +             L I    K+  G+Y 
Sbjct: 116 L------KAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYR 169
Query: 281 IRVVNEAGEA 290
               N  G A
Sbjct: 170 CVAKNSLGTA 179

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-T 63
           + P F + I  +   +   A F CKVEG+P P + W KD   +  + H+ I   E  + +
Sbjct: 40  VKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
           L I     +D   YTCKA N  G ATC+A L+V
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
           P FTK +  +     S A     V G P P + W++    +       ++++   G C L
Sbjct: 42  PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD-EEGNCSL 100
Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
           +ISE    D+A Y+ KAVN+ G A C A L++
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
           V G P P V W  D  P+KE +   I  D +G C L ISEV  ++   Y+C AVN
Sbjct: 65  VEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 119

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-T 63
           + P F + I  +   +   A F CKVEG+P P + W KD   +  + H+ I   E  + +
Sbjct: 40  VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
           L I     +D   YTCKA N  G ATC+A L+V
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
           P FTK +  +     S A     V G P P + W++    +       ++++   G C L
Sbjct: 42  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD-EEGNCSL 100
Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
           +ISE    D+A Y+ KAVN+ G A C A L++
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
           V G P P V W  D  P+KE +   I  D +G C L ISEV  ++   Y+C AVN
Sbjct: 65  VEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 119

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 81/204 (39%), Gaps = 18/204 (8%)
Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD----NGHTMEFNPTTG 161
           P+  +    +I     PATL     GRPTP+I WY+G E +  D      H M   P+  
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM-LLPSGS 68
Query: 162 ECVLSI--SEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
              L I     +  DE VY   A N  G A    +  L  A   D  R  + P+ V    
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEA-VSHDASLEVAILRDDFR--QNPSDV---- 121
Query: 220 ALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGK 278
             +V       +E +   G P P + W K+G  +  KD        KL+I  T K   GK
Sbjct: 122 --MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGK 179
Query: 279 YEIRVVNEAGEARTSGSVTITVAE 302
           Y     N  GE R S    +TV E
Sbjct: 180 YVCVGTNMVGE-RESEVAELTVLE 202

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 35/196 (17%)
Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN--- 262
           PR++E P+       L+V K    TL  +  G PTP ++W+K G+ + +   + + +   
Sbjct: 10  PRIVEHPS------DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 263 -------VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESH 315
                    ++V  + ++   G Y     N  GEA  S   ++ VA        +R +  
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA-VSHDASLEVAI-------LRDDFR 115
Query: 316 PTASFQWFIHSEPVVV-----TGKPTPLVTWSHDGTPMKEGKE-VTIYQDTDGLCKLAIS 369
              S       EP V+      G P P ++W  DG+P+ +  E +TI        KL I+
Sbjct: 116 QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG-----KLMIT 170
Query: 370 EVFPENAGLYSCTAVN 385
                +AG Y C   N
Sbjct: 171 YTRKSDAGKYVCVGTN 186

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH-ATEHYLIT-TVESVST 63
           AP F  K++     +  P  FTC+V G+P P + W KDG ++   ++HY I   ++   +
Sbjct: 7   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEA 105
           L     T +D G YT  A N  G  +C+  L+V    + G +
Sbjct: 67  LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVNQRGRS 108

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 41/94 (43%)
Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
           AP F   LK        P T    V G P P I W++  ++I P + H        G C 
Sbjct: 7   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
           L  + +T  D+  Y++ A N  GR  C   L+++
Sbjct: 67  LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQ 100

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 44/101 (43%)
Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
           AP F   LK        P T    V G P P I W++  ++I P + H        G C 
Sbjct: 7   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
           L  + +T  D+  Y++ A++ + ++   G   V  +++  R
Sbjct: 67  LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVNQRGR 107

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 62/171 (36%), Gaps = 22/171 (12%)
Query: 26  FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85
           F+C+  G P P ++W ++G  +   E Y++    S + L + N    D G Y C+ATN  
Sbjct: 24  FSCRASGSPEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKA 81
Query: 86  GVATCSANLIVLEKEESGEAPKFTKP----LKPVIAEAQSPATLKATVTGRPTPSICWYR 141
           G     A L V           F +P    LK          TL     G P P I W R
Sbjct: 82  GEDEKQAFLQV-----------FVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKR 130
Query: 142 GKEEILPDNGHT-----MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
             +      G       +E     G   L I +    D   Y  +A +  G
Sbjct: 131 AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Query: 212 PTIVRPLQAL--LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET-KDNVTKLVI 268
           P I  P ++      +   +T     +G+P P + WF+NGK I   +    K + T+L +
Sbjct: 3   PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE-SHPTASFQWFIHSE 327
           +       G Y  R  N+AGE      + + V   +  ++ ++ E ++          +E
Sbjct: 63  RNIINSDGGPYVCRATNKAGEDEKQAFLQVFV---QPHIIQLKNETTYENGQVTLVCDAE 119
Query: 328 PVVVTGKPTPLVTWSH--DGTPMKEGKEVTI----YQDTDGLCKLAISEVFPENAGLYSC 381
                G+P P +TW    DG    EG +        +   G   L I +V   ++G Y C
Sbjct: 120 -----GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC 174
Query: 382 TAVN 385
            A +
Sbjct: 175 EAAS 178

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVESVSTLE 65
           P F++    +   + +     CKV G P P ++WQ DG  +   + H ++     V +L 
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
           I   T  D G+YTC ATN  G  + S  L+V  KE
Sbjct: 70  IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 19/198 (9%)
Query: 108 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI--LPDNGHTMEFNPTTGECVL 165
           F + + P   +    A +   V+  P P++ W    EE+  + DN   M          L
Sbjct: 5   FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM-----LANNNL 59
Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL--LV 223
            I      DE +Y  +     GR E R  +  R    I    V   P I  P ++     
Sbjct: 60  QILNINKSDEGIYRCE-----GRVEARGEIDFRDIIVI----VNVPPAISMPQKSFNATA 110
Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET-KDNVTKLVIKQTTKKTTGKYEIR 282
            +   +T     +G+P P + WF+NGK I   +    K + T+L ++       G Y  R
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCR 170
Query: 283 VVNEAGEARTSGSVTITV 300
             N+AGE      + + V
Sbjct: 171 ATNKAGEDEKQAFLQVFV 188

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH-ATEHYLIT-TVESVST 63
           AP F  K++     +  P  FTC+V G+P P + W KDG ++   ++HY I   ++   +
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
           L     T +D G YT  A N  G  +C+  L+V
Sbjct: 68  LHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 43/101 (42%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           S  AP F   LK        P T    V G P P I W++  ++I P + H        G
Sbjct: 5   SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT 202
            C L  + +T  D+  Y++ A N  GR  C   L+++   +
Sbjct: 65  TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%)
Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           S  AP F   LK        P T    V G P P I W++  ++I P + H        G
Sbjct: 5   SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDG 495
            C L  + +T  D+  Y++ A++ + +I   G
Sbjct: 65  TCSLHTTASTLDDDGNYTIMAANPQGRISCTG 96

>pdb|1G1C|A Chain A, I1 Domain From Titin Length = 99

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVT 264
           +EAP I   +Q+  V + S         G P PE +W+KNG +I   D       +DNV 
Sbjct: 3   MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 62
Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGE 289
           +LVI+  T + +    ++ +N AGE
Sbjct: 63  ELVIRDVTGEDSASIMVKAINIAGE 87

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 72/201 (35%), Gaps = 34/201 (16%)
Query: 211 APTIVRP----LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDN 262
           AP   RP     + L VP  +TV       G PTP + W KNG+E   +     I+ +  
Sbjct: 11  APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------------TVAEAE 304
              LV++       G Y   V N+ G  R + ++ +                  T     
Sbjct: 71  QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 130
Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
            V    +V S      QW  H E  V   K  P      DGTP     +  I +  +   
Sbjct: 131 DVEFHCKVYSDAQPHIQWLKHVE--VNGSKVGP------DGTPYVTVLKSWISESVEADV 182
Query: 365 KLAISEVFPENAGLYSCTAVN 385
           +L ++ V   + G Y C A N
Sbjct: 183 RLRLANVSERDGGEYLCRATN 203

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 5  LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
          LA R + K + +  ++ + A F+C  +G P+PT+TW + G  L  +  + +TT +  ST 
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72
Query: 65 EIINPTKEDIGVYTCKATNIGG 86
          EI +    D G Y+    N  G
Sbjct: 73 EISSVQASDEGNYSVVVENSEG 94

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 24  ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI--INPTK--EDIGVYTC 79
           A F C   G P P++ W+K+G ++  T+    T +E    + I  I P +   D   Y C
Sbjct: 26  ASFYCAARGDPPPSIVWRKNGKKVSGTQSRY-TVLEQPGGISILRIEPVRAGRDDAPYEC 84
Query: 80  KATN-IGGVATCSANLIVLEKEESGEA-PKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 137
            A N +G   +  A L + E +++    P  T+     + E      +     G PTP+I
Sbjct: 85  VAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNI 144
Query: 138 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA-NLV 196
            W + + ++   N        +  +  L I  +  +D+  Y   A N+ G    +A NL 
Sbjct: 145 YWIKNQTKVDMSNPRY-----SLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLY 199
Query: 197 LR 198
           ++
Sbjct: 200 VK 201

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 24  ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI--INPTK--EDIGVYTC 79
           A F C   G P P++ W+K+G ++  T+    T +E    + I  I P +   D   Y C
Sbjct: 24  ASFYCAARGDPPPSIVWRKNGKKVSGTQSRY-TVLEQPGGISILRIEPVRAGRDDAPYEC 82
Query: 80  KATN-IGGVATCSANLIVLEKEESGEA-PKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 137
            A N +G   +  A L + E +++    P  T+     + E      +     G PTP+I
Sbjct: 83  VAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNI 142
Query: 138 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA-NLV 196
            W + + ++   N        +  +  L I  +  +D+  Y   A N+ G    +A NL 
Sbjct: 143 YWIKNQTKVDMSNPRY-----SLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLY 197
Query: 197 LR 198
           ++
Sbjct: 198 VK 199

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 74/202 (36%), Gaps = 35/202 (17%)
Query: 211 APTIVRP----LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDN 262
           AP   RP     + L VP  +TV       G PTP + W KNG+E   +     I+ +  
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------------TVAEAE 304
              LV++       G Y   V N+ G  R + ++ +                  T     
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 238
Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG-L 363
            V    +V S      QW  H E  V   K  P      DGTP     +      TD  L
Sbjct: 239 DVEFHCKVYSDAQPHIQWLKHVE--VNGSKVGP------DGTPYVTVLKTAGANTTDKEL 290
Query: 364 CKLAISEVFPENAGLYSCTAVN 385
             L++  V  E+AG Y+C A N
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGN 312

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 105/485 (21%), Positives = 181/485 (37%), Gaps = 91/485 (18%)
Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI-AEA 119
           +STL I   T+ D G+YTC A++  G+ T   +  V   E+   A  F   ++ ++ A  
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASS--GLMTKKNSTFVRVHEKPFVA--FGSGMESLVEATV 344
Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT-GECVLSISEATPQDEAVY 178
                + A   G P P I WY+        NG  +E N T     VL+I E + +D   Y
Sbjct: 345 GERVRIPAKYLGYPPPEIKWYK--------NGIPLESNHTIKAGHVLTIMEVSERDTGNY 396
Query: 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVT-------- 230
           +V   N   + E ++++V   +  +  P  +   +++ P+ +       T+T        
Sbjct: 397 TVILTNPISK-EKQSHVV---SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPP 452
Query: 231 ---------LEAEYTGTPTPEV---------KW-----FKNGKEI-VSKD----IETKDN 262
                    LE E    P+  V         +W     F+ G +I V+K+    IE K+ 
Sbjct: 453 PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK 512
Query: 263 -VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA------------EAETVMMD 309
            V+ LVI+      +  Y+   VN+ G      S  +T              E E+V + 
Sbjct: 513 TVSTLVIQ--AANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLW 570
Query: 310 VRVESHPTASFQWFI---HSEPVVVTGKPTPLVT-----WSHDGTPMKEGKEVTIYQDTD 361
              +     +  W+       P+ V   PTP+       W  + T             T+
Sbjct: 571 CTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFS--------NSTN 622
Query: 362 GLCKLAISEVFPENAGLYSCTAVNPXXXXXXXXXXXXXXXXXSGEAPKFTKPLKPVIAEA 421
            +  + +     ++ G Y C A +                     AP  T  L+      
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV--APTITGNLENQTTSI 680
Query: 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
                +  T +G P P I W++  E ++ D+G  ++     G   L+I     +DE +Y+
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK----DGNRNLTIRRVRKEDEGLYT 736
Query: 482 VKASS 486
            +A S
Sbjct: 737 CQACS 741

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 111/283 (39%), Gaps = 34/283 (12%)
Query: 25  LFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTV---ESVSTLEIINPTKEDIGVYTCK 80
            F C+V G      ++W     E  +     I+ V   +  STL I N   +D G+Y C 
Sbjct: 21  FFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80
Query: 81  ATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 139
            T   G  +  + N+ + +K     AP       P   +    A +   V     P+I W
Sbjct: 81  VTAEDGTQSEATVNVKIFQKLMFKNAPT------PQEFKEGEDAVIVCDVVSSLPPTIIW 134
Query: 140 -YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
            ++G++ IL  +   +  +       L I      DE  Y  +     GR   R  +  +
Sbjct: 135 KHKGRDVILKKDVRFIVLSNN----YLQIRGIKKTDEGTYRCE-----GRILARGEINFK 185
Query: 199 KATTIDKPRVLEAPTIVRPLQALL---VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK 255
               I     +  P  V+  Q+++        +VTL  +  G P P + W K+G+ I ++
Sbjct: 186 DIQVI-----VNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE 240
Query: 256 DIETK-----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293
           + + +     D+ ++L I+   K    +Y     N+AGE   S
Sbjct: 241 EEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDAS 283

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 24  ALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN 83
           AL  CK  G PLP ++W K+G      +     T++   TL+I N    D G YTC AT+
Sbjct: 26  ALLKCKATGDPLPVISWLKEGFTFPGRDPR--ATIQEQGTLQIKNLRISDTGTYTCVATS 83
Query: 84  IGGVATCSANLIVLEKEESG 103
             G  + SA   VL+  ESG
Sbjct: 84  SSGETSWSA---VLDVTESG 100

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
           +PA+FTC+  G+P+ T++W KDG  +  +E          S L I +  KED G+Y C  
Sbjct: 326 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFV 375
Query: 82  TNIGGVATCSANL 94
            N    A  SA L
Sbjct: 376 RNDRESAEASAEL 388

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 141/398 (35%), Gaps = 86/398 (21%)
Query: 28  CKVEGHPLPTMTW-QKDGTELHATEHYLITTVESVSTLEIINPTKEDI------GVYTCK 80
           CK  G+P+P + W + DGT +       +  + S   L       ED        VY C 
Sbjct: 26  CKASGNPMPEIIWIRSDGTAVGDVPG--LRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 81  ATN-IGGVATCSANL--IVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-------- 129
           A N  G + +   ++  +V++  ES    ++      V+ + + P+ +   V        
Sbjct: 84  ARNQFGSIISRDVHVRAVVIQSYESEADNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDS 143
Query: 130 TGRPT--PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
            GR     +     GK  +LP           +GE  L I E  P+D           + 
Sbjct: 144 EGRNYYPNNAAETDGKYLVLP-----------SGE--LHIREVGPED----------GYK 180
Query: 188 RAECRANLVL----RKATTIDKPRVLEAPTIVRP-------LQALLVPKDSTVTLEAEYT 236
             +CR    L    R + T  +  + E    VRP        Q + V   S+ +L     
Sbjct: 181 SYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQ 240
Query: 237 GTPTPEVKWFK-----NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291
             PTP  +W+K       K+ V  +   K     L+IK    + +GKY   V N  G   
Sbjct: 241 SYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 300
Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV----TGKPTPLVTWSHDGTP 347
               +T+T   +  +         PT +  +     P V     TG P   V+W  DG  
Sbjct: 301 VETVLTVTAPLSAKI-------DPPTQTVDF---GRPAVFTCQYTGNPIKTVSWMKDGKA 350
Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
           +   + V           L I  V  E+ G+Y C   N
Sbjct: 351 IGHSESV-----------LRIESVKKEDKGMYQCFVRN 377

>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2 Length = 189

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 17/184 (9%)
Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
           +   FTC   G P     +   G ++ +T+  ++      S L I N   ED G+Y C+A
Sbjct: 18  ESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA 77
Query: 82  TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR 141
           T+  G  T  A +++    E  +   F + + P   +    A +   V+  P P++ W  
Sbjct: 78  TDAKG-QTQEATVVL----EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 132
Query: 142 GKEEI--LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRK 199
             EE+  + DN   M          L I      DE +Y  +     GR E R  +  R 
Sbjct: 133 HNEEVTTISDNRFAM-----LANNNLQILNINKSDEGIYRCE-----GRVEARGEIDFRD 182
Query: 200 ATTI 203
              I
Sbjct: 183 IIVI 186

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 26  FTCKVEGHPLPTMTWQK--DGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYT 78
             C  EG P+P +TW++  DG      +  L   +E       S+L I +    D G Y 
Sbjct: 20  LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 79  CK-ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 137
           C+ A+ IGG        + L+ E    APKF        +   +P  +   V   P  SI
Sbjct: 80  CEAASRIGGHQKS----MYLDIE---YAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132
Query: 138 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
            W R K  +   N   ++   T  + +L I+  +  D   Y+  A N  G
Sbjct: 133 HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 26  FTCKVEGHPLPTMTWQK--DGTELHATEHYLITTVE-----SVSTLEIINPTKEDIGVYT 78
             C  EG P+P +TW++  DG      +  L   +E       S+L I +    D G Y 
Sbjct: 20  LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 79  CK-ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 137
           C+ A+ IGG        + L+ E    APKF        +   +P  +   V   P  SI
Sbjct: 80  CEAASRIGG----HQKSMYLDIE---YAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132
Query: 138 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
            W R K  +   N   ++   T  + +L I+  +  D   Y+  A N  G
Sbjct: 133 HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
           +PA+FTC+  G+P+ T++W KDG  +  +E          S L I +  KED G+Y C  
Sbjct: 329 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFV 378
Query: 82  TNIGGVATCSANL 94
            N    A  SA L
Sbjct: 379 RNDRESAEASAEL 391

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 99/263 (37%), Gaps = 59/263 (22%)
Query: 140 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR-------AECR 192
           Y GK  +LP           +GE  L I E  P+D   Y      T  R       +  +
Sbjct: 160 YDGKYLVLP-----------SGE--LHIREVGPEDG--YKSYQCRTKHRLTGETRLSATK 204
Query: 193 ANLVLRKATTIDKPRVLEAPTIV-RPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK---- 247
             LV+ +  +   PR    P +V +PL+ ++     T++L     G P P  +W+K    
Sbjct: 205 GRLVITEPISSSAPRT---PALVQKPLELMVA---HTISLLCPAQGFPAPSFRWYKFIEG 258
Query: 248 -NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
              K+ V  +   K     L+IK    + +GKY   V N  G       +T+T       
Sbjct: 259 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP----- 313
Query: 307 MMDVRVESHPTASFQWFIHSEPVVV----TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG 362
            +  +++  PT +  +     P V     TG P   V+W  DG  +   + V        
Sbjct: 314 -LSAKIDP-PTQTVDF---GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-------- 360
Query: 363 LCKLAISEVFPENAGLYSCTAVN 385
              L I  V  E+ G+Y C   N
Sbjct: 361 ---LRIESVKKEDKGMYQCFVRN 380

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
           +PA+FTC+  G+P+ T++W KDG  +  +E          S L I +  KED G+Y C  
Sbjct: 323 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFV 372
Query: 82  TNIGGVATCSANL 94
            N    A  SA L
Sbjct: 373 RNDRESAEASAEL 385

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 99/263 (37%), Gaps = 59/263 (22%)
Query: 140 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR-------AECR 192
           Y GK  +LP           +GE  L I E  P+D   Y      T  R       +  +
Sbjct: 154 YDGKYLVLP-----------SGE--LHIREVGPEDG--YKSYQCRTKHRLTGETRLSATK 198
Query: 193 ANLVLRKATTIDKPRVLEAPTIV-RPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK---- 247
             LV+ +  +   PR    P +V +PL+ ++     T++L     G P P  +W+K    
Sbjct: 199 GRLVITEPISSSAPR---TPALVQKPLELMVA---HTISLLCPAQGFPAPSFRWYKFIEG 252
Query: 248 -NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
              K+ V  +   K     L+IK    + +GKY   V N  G       +T+T       
Sbjct: 253 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP----- 307
Query: 307 MMDVRVESHPTASFQWFIHSEPVVV----TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG 362
            +  +++  PT +  +     P V     TG P   V+W  DG  +   + V        
Sbjct: 308 -LSAKIDP-PTQTVDF---GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-------- 354
Query: 363 LCKLAISEVFPENAGLYSCTAVN 385
              L I  V  E+ G+Y C   N
Sbjct: 355 ---LRIESVKKEDKGMYQCFVRN 374

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 66/176 (37%), Gaps = 19/176 (10%)
Query: 20  QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES--VSTLEIINPTKEDIGVY 77
           Q QP    C VEG   P + W KDG  +   +   I   E   +  L + +  + D G Y
Sbjct: 16  QGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 78  TCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-S 136
            C+  + G         + +E       P FT   K +     +P  L     G P P +
Sbjct: 76  WCQVEDGGETEISQPVWLTVEG-----VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVT 130
Query: 137 ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192
           I W+RG  +I           P     VL+++  T      +S +A N  G A  R
Sbjct: 131 IVWWRGTTKI---------GGPAPSPSVLNVTGVT--QSTXFSCEAHNLKGLASSR 175

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
          + R + K + +  ++ + A F+C  +G P+PT+TW + G  L  +  + +TT +  ST E
Sbjct: 8  SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 66 IINPTKEDIGVYTCKATNIGG 86
          I +    D G Y+    N  G
Sbjct: 68 ISSVQASDEGNYSVVVENSEG 88

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 5  LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VST 63
          +AP F   ++     + Q  +  C V G P+P +TW  +G  +     Y  +T E+ V+ 
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ----YARSTCEAGVAE 65
Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
          L I +   ED G YTC A N  G  +CSA + V
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 3  EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-----HYLITT 57
          E   PR +E    ++  + +PA   CK EG P PT+ W K G  +   +     H ++  
Sbjct: 6  EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 58 VESVSTLEIIN--PTKEDIGVYTCKATNIGGVA 88
            S+  L I++   ++ D GVY C A N  G A
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           S   P F   L            +   V G P P + W R ++ + PD     E     G
Sbjct: 2   SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAE-EAEGG 60
Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
            C L I  A   D   Y+ KAVN +G  +C A L +R
Sbjct: 61  LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 127/328 (38%), Gaps = 48/328 (14%)
Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTL 64
            P F+E +   V+  E   L  CKV      T + W KD  E+   E +     + + TL
Sbjct: 7   GPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTL 63
Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPK-FTKPLKPVIAEAQSPA 123
            I   +K+D G+Y     +  G       L+        EA K     +   IA + +  
Sbjct: 64  LITEFSKKDAGIYEVILKDDRGKDKSRLKLV-------DEAFKELMMEVCKKIALSATDL 116
Query: 124 TLKATVTGRPTPSICWYRGKEEIL--PDNGHTMEFNP-----TTGECV-LSISEATPQDE 175
            +++T  G    S   Y  ++  +    NG  + ++       TGE + L I+E TP D+
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 176
Query: 176 AVYSV----------KAVNTFGRA--ECRANLVLRKATTI---DKPRVLEA-PTIVRPLQ 219
             Y +          K V+  G+A  E  A     K   I   ++ RVL   P +V    
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT--- 233
Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKK 274
              + +   + L     G P PEV W KN K + S D      E         I   +  
Sbjct: 234 ---IQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEA-GRTAYFTINGVSTA 289
Query: 275 TTGKYEIRVVNEAGEARTSGSVTITVAE 302
            +GKY + V N+ G   +  +V++ + E
Sbjct: 290 DSGKYGLVVKNKYGSETSDFTVSVFIPE 317

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 36/90 (40%)
Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
          P  +  +Q      +  A F  K  G P PT  W KDG  +     Y ++  +    LEI
Sbjct: 7  PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIV 96
                D G+YTC   N  G  + S  L +
Sbjct: 67 HKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
           T + D  V S   A F        V  TG+P P   W+ DG  + +G +  + +D  G  
Sbjct: 11  TGLQDTTVSSDSVAKF-------AVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 365 KLAISEVFPENAGLYSCTAVN 385
            L I +    ++GLY+CT  N
Sbjct: 64  -LEIHKTDTSDSGLYTCTVKN 83

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTG 277
           + +   +T+   +TG PTPEV W   G++I S++     IE  D++T L+I    K+  G
Sbjct: 17  IDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGG 76
Query: 278 KYEIRVVNEAG 288
            Y + + NE G
Sbjct: 77  LYTLSLGNEFG 87

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTG 277
           + +   +T+   +TG PTPEV W   G++I S++     IE  D++T L+I    K+  G
Sbjct: 19  IDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGG 78
Query: 278 KYEIRVVNEAG 288
            Y + + NE G
Sbjct: 79  LYTLSLGNEFG 89

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 75/199 (37%), Gaps = 45/199 (22%)
Query: 26  FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           F C   G+P+PTM W K+G E    H    Y +        +E + P+  D G YTC   
Sbjct: 39  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 96
Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG----------R 132
           N  G    + +L V+E+           P +P++ +A  PA     V G           
Sbjct: 97  NEYGSINHTYHLDVVERS----------PHRPIL-QAGLPANASTVVGGDVEFVCKVYSD 145
Query: 133 PTPSICWYRGKE--------------EILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
             P I W +  E              ++L  +G     N +  E VL++   T  D   Y
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG----INSSNAE-VLALFNVTEADAGEY 200
Query: 179 SVKAVNTFGRAECRANLVL 197
             K  N  G+A   A L +
Sbjct: 201 ICKVSNYIGQANQSAWLTV 219

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%)
Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           P F+ + +PV       A   C V G P P + W+K G +L A+E        +   L +
Sbjct: 15  PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 67  INPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
                 D GVY C+A N  G A  +A + VLE
Sbjct: 75  TAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 106

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 25  LFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI 84
           + +C   G P+PT+ W+KDG  L +T+   I  +E+   L+I      D G YTC A+  
Sbjct: 27  VLSCVATGSPVPTILWRKDGV-LVSTQDSRIKQLEN-GVLQIRYAKLGDTGRYTCIASTP 84
Query: 85  GGVATCSANLIVLEKEESGEAPKFTKP 111
            G AT SA + V E     + P+ T P
Sbjct: 85  SGEATWSAYIEVQEFGVPVQPPRPTDP 111

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 26  FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           F C   G+P+PTM W K+G E    H    Y +        +E + P+  D G YTC   
Sbjct: 30  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 87
Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
           N  G    + +L V+E+           P +P++ +A  PA   +TV G     +C
Sbjct: 88  NEYGSINHTYHLDVVERS----------PHRPIL-QAGLPAN-ASTVVGGDVEFVC 131

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 26  FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           F C   G+P+PTM W K+G E    H    Y +        +E + P+  D G YTC   
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 88
Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
           N  G    + +L V+E+           P +P++ +A  PA   +TV G     +C
Sbjct: 89  NEYGSINHTYHLDVVERS----------PHRPIL-QAGLPAN-ASTVVGGDVEFVC 132

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 74/199 (37%), Gaps = 45/199 (22%)
Query: 26  FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           F C   G+P+PTM W K+G E    H    Y +        +E + P+  D G YTC   
Sbjct: 39  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 96
Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG----------R 132
           N  G    + +L V+E+             +P++ +A  PA     V G           
Sbjct: 97  NEYGSINHTYHLDVVERSRH----------RPIL-QAGLPANASTVVGGDVEFVCKVYSD 145
Query: 133 PTPSICWYRGKE--------------EILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
             P I W +  E              ++L  +G     N +  E VL++   T  D   Y
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG----INSSNAE-VLALFNVTEADAGEY 200
Query: 179 SVKAVNTFGRAECRANLVL 197
             K  N  G+A   A L +
Sbjct: 201 ICKVSNYIGQANQSAWLTV 219

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 17/189 (8%)
Query: 26  FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           F C   G P PT+ W K+G E    H    Y +        ++ + P+  D G YTC   
Sbjct: 37  FKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPS--DKGNYTCIVE 94
Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 142
           N  G    +  L V+E+       +   P    +A   S       V   P P I W + 
Sbjct: 95  NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG-SNVEFMCKVYSDPQPHIQWLKH 153
Query: 143 KE----EILPDNGHTMEFNPTTGEC-------VLSISEATPQDEAVYSVKAVNTFGRAEC 191
            E    +I PDN   ++   T G         VL +   + +D   Y+  A N+ G +  
Sbjct: 154 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHH 213
Query: 192 RANLVLRKA 200
            A L + +A
Sbjct: 214 SAWLTVLEA 222

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 66/186 (35%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
           VP   TV  +   +GTP P ++W KNGKE          + +     +++        G 
Sbjct: 29  VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 88
Query: 279 YEIRVVNEAGEARTSGSVTI------------------TVAEAETVMMDVRVESHPTASF 320
           Y   V NE G    +  + +                  TVA    V    +V S P    
Sbjct: 89  YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 148
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLY 379
           QW  H E  V   K  P      D  P  +  +      TD   + L +  V  E+AG Y
Sbjct: 149 QWLKHIE--VNGSKIGP------DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 200
Query: 380 SCTAVN 385
           +C A N
Sbjct: 201 TCLAGN 206

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 17/189 (8%)
Query: 26  FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           F C   G P PT+ W K+G E    H    Y +        ++ + P+  D G YTC   
Sbjct: 36  FKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPS--DKGNYTCIVE 93
Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 142
           N  G    +  L V+E+       +   P    +A   S       V   P P I W + 
Sbjct: 94  NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG-SNVEFMCKVYSDPQPHIQWLKH 152
Query: 143 KE----EILPDNGHTMEFNPTTGEC-------VLSISEATPQDEAVYSVKAVNTFGRAEC 191
            E    +I PDN   ++   T G         VL +   + +D   Y+  A N+ G +  
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHH 212
Query: 192 RANLVLRKA 200
            A L + +A
Sbjct: 213 SAWLTVLEA 221

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 66/186 (35%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
           VP   TV  +   +GTP P ++W KNGKE          + +     +++        G 
Sbjct: 28  VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 279 YEIRVVNEAGEARTSGSVTI------------------TVAEAETVMMDVRVESHPTASF 320
           Y   V NE G    +  + +                  TVA    V    +V S P    
Sbjct: 88  YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 147
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLY 379
           QW  H E  V   K  P      D  P  +  +      TD   + L +  V  E+AG Y
Sbjct: 148 QWLKHIE--VNGSKIGP------DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Query: 380 SCTAVN 385
           +C A N
Sbjct: 200 TCLAGN 205

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           PRFI K       + Q A F C+V     P +TW KD  EL  +  Y+     +   L I
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 67  INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
                +D G YT +A N  G       ++ L      E  KF +PL+P + +A SP
Sbjct: 437 NRVKGDDKGEYTVRAKNSYG---TKEEIVFLNVTRHSEPLKF-EPLEP-MKKAPSP 487

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV--RPLQALL 222
           L+I   T  D+ +Y+  A          + L+ +K +T    RV E P +     +++L+
Sbjct: 162 LTIDGVTRSDQGLYTCAA---------SSGLMTKKNSTF--VRVHEKPFVAFGSGMESLV 210
Query: 223 -VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
                  V + A+Y G P PE+KW+KNG  + S       +V  L I + +++ TG Y +
Sbjct: 211 EATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTV 268
Query: 282 RVVNEAGEARTSGSVTITV 300
            + N   + + S  V++ V
Sbjct: 269 ILTNPISKEKQSHVVSLVV 287

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 26  FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           F C   G+P+PTM W K+G E    H    Y +        +E + P+  D G YTC   
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 88
Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
           N  G    + +L V+E+           P +P++ +A  PA   +TV G     +C
Sbjct: 89  NEYGSINHTYHLDVVERW----------PHRPIL-QAGLPAN-ASTVVGGDVEFVC 132

>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11 Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 121/285 (42%), Gaps = 36/285 (12%)
Query: 34  PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS-- 91
           P    +W KD      +    + +  + + +   +   +D+G+Y+C  T+  G+A+    
Sbjct: 30  PKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLI 89
Query: 92  -----ANLIVLEKEESGEAPKF-TKPLKP-----VIAEAQSPATLKA-TVTGRPTPSICW 139
                  L+ L  E      KF T P+K      ++ + Q    ++A  ++G     + +
Sbjct: 90  DEEELKRLLALSHEH-----KFPTVPVKSELAVEILEKGQVRFWMQAEKLSG--NAKVNY 142
Query: 140 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL-- 197
              ++EI     + M  +  TG   + + +   +DE  Y+ +  +  G+A   + +VL  
Sbjct: 143 IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVG 200
Query: 198 ------RKATTIDKPRVL--EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKN 248
                 +K     +   +  + P  V  L +  V  +  V L+ +         + W+K+
Sbjct: 201 DVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD 259
Query: 249 GKEI-VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
            +EI V +  + KD +  L+I + +KK  G YE+ + ++ G+ ++
Sbjct: 260 EREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS 304

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 17/189 (8%)
Query: 26  FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           F C   G P PT+ W K+G E    H    Y +        ++ + P+  D G YTC   
Sbjct: 36  FKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPS--DKGNYTCIVE 93
Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 142
           N  G    +  L V+E+       +   P    +A   S       V   P P I W + 
Sbjct: 94  NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG-SNVEFMCKVYSDPQPHIQWLKH 152
Query: 143 KE----EILPDNGHTMEFNPTTGEC-------VLSISEATPQDEAVYSVKAVNTFGRAEC 191
            E    +I PDN   ++   T G         VL +   + +D   Y+  A N+ G +  
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHH 212
Query: 192 RANLVLRKA 200
            A L + +A
Sbjct: 213 SAWLTVLEA 221

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 66/186 (35%), Gaps = 31/186 (16%)
Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
           VP   TV  +   +GTP P ++W KNGKE          + +     +++        G 
Sbjct: 28  VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 279 YEIRVVNEAGEARTSGSVTI------------------TVAEAETVMMDVRVESHPTASF 320
           Y   V NE G    +  + +                  TVA    V    +V S P    
Sbjct: 88  YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 147
Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLY 379
           QW  H E  V   K  P      D  P  +  +      TD   + L +  V  E+AG Y
Sbjct: 148 QWLKHIE--VNGSKIGP------DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Query: 380 SCTAVN 385
           +C A N
Sbjct: 200 TCLAGN 205

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVESVSTLE 65
           PRFI+  + +   + +      KV G P P ++W  +G  + + + H +I + + + +L 
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
                  D G Y C A N  G AT +  L VL KE
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 26  FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           F C   G+P+PTM W K+G E    H    Y +        +E + P+  D G YTC   
Sbjct: 29  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 86
Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
           N  G    + +L V+E+             +P++ +A  PA   +TV G     +C
Sbjct: 87  NEYGSINHTYHLDVVERSRH----------RPIL-QAGLPAN-ASTVVGGDVEFVC 130

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 26  FTCKVEGHPLPTMTWQKDGTEL---HATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           F C   G+P+PTM W K+G E    H    Y +        +E + P+  D G YTC   
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DKGNYTCVVE 88
Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 138
           N  G    + +L V+E+             +P++ +A  PA   +TV G     +C
Sbjct: 89  NEYGSINHTYHLDVVERSRH----------RPIL-QAGLPAN-ASTVVGGDVEFVC 132

>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11 Length = 207

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 72  EDIGVYTC-----KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE-------A 119
           ED G YT      KATN   V         L+KE   +  ++ +   P   E        
Sbjct: 71  EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 130
Query: 120 QSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
           +    LK  V   +    I WY+ + EI  D  H  +     G C L I+E + +D  +Y
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK----DGICTLLITEFSKKDAGIY 186
Query: 179 SVKAVNTFGRAECRANLV 196
            V   +  G+ + R  LV
Sbjct: 187 EVILKDDRGKDKSRLKLV 204

>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The Fibroblast Growth Factor Receptor Length = 190

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 22  QPALFTCKVEGHPLPTMTWQKDGTEL-----HATEHYLITTVESVSTLEIIN-PTKEDIG 75
           Q A+  CK  G+P P   W+K    +     +++  + I   E+ + L I+N    ED G
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167
Query: 76  VYTCKATNIGGVATCSANLIV 96
            Y C ATN  G A+ S  L V
Sbjct: 168 EYECNATNSIGSASVSTVLRV 188

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 94  LIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT 153
           L VLE+     AP  T  L+           +  T +G P P I W++  E ++ D+G  
Sbjct: 3   LTVLERV----APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 58
Query: 154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA 200
           ++     G   L+I     +DE +Y+ +A +  G A+  A  ++  A
Sbjct: 59  LK----DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	579
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-126
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-114
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-92
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-88
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-62
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-96
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-93
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-91
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-87
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-73
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-68
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-51
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-80
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-77
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-75
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-58
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-57
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-46
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-36
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-77
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-65
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-64
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-43
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-20
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-73
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-63
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-51
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-72
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-54
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-46
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-25
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-72
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-55
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-43
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-20
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-71
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-65
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-65
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-45
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-41
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-70
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-51
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-50
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-43
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-32
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-66
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-49
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-48
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-39
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-33
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-65
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-60
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-60
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-32
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-64
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-53
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-34
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-64
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-54
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-51
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-32
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-62
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-53
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-52
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-40
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-37
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-17
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-62
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-56
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-38
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-28
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-60
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-50
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-49
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-30
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-21
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-57
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-41
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-56
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-53
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-47
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-39
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-54
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-49
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-43
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-42
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-27
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-27
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-52
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-49
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	5e-45
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-42
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	5e-28
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-25
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-51
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-47
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-41
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-38
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-24
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-23
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-50
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-42
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-41
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-36
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-25
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-09
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-49
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-45
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-42
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-29
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-47
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-40
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-37
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-35
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-23
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-21
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-45
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-36
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-35
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-31
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	8e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-08
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-44
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-42
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-35
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-32
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-19
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-19
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-43
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-35
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-28
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-28
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-23
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-43
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	9e-33
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-32
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-31
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-17
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-42
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-33
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-31
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-30
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-20
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	8e-18
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	7e-42
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-33
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-32
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-22
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-42
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	6e-32
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-31
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-29
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	9e-22
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-15
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-41
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-34
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	9e-32
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-31
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-20
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-18
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-41
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-37
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-36
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-33
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	9e-23
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	9e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-41
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-37
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-32
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-31
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-19
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-15
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	9e-41
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	9e-36
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-31
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-28
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-16
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-39
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-31
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-30
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-27
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-16
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-39
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	6e-32
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-31
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-29
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-18
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-38
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-31
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-28
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-16
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-36
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-25
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-25
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-24
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-19
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	6e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-36
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	9e-28
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-27
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-25
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-20
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-12
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	8e-36
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	5e-28
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-24
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-22
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-16
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-14
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-35
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-27
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-24
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-14
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-34
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	8e-29
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-27
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-26
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-13
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-34
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-27
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-24
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-23
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-19
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	8e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-34
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-28
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-27
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-33
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-27
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-18
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-32
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-28
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-26
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-25
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-20
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-13
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-30
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-29
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-19
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-15
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-09
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-30
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-28
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-27
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-23
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-17
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-30
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-28
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-25
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-16
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	8e-30
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-24
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-23
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-21
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-19
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-29
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-24
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	8e-22
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-21
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-20
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-29
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-22
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-20
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	8e-20
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-19
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-29
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-21
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-21
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-20
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-15
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-10
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-29
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-23
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	7e-21
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	8e-21
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-20
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-28
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-27
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-25
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-24
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-18
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-28
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-25
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-23
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-28
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	7e-24
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	5e-22
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-21
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-28
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-24
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-22
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	9e-22
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-28
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-25
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-19
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-15
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-13
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	7e-28
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-26
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-23
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-23
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-20
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-27
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-25
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-22
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-21
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	9e-19
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-27
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-26
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-23
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-20
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-20
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-27
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-24
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-18
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-18
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-13
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-10
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-27
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	6e-22
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	8e-22
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-19
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-18
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	6e-27
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	6e-26
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-22
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-21
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-18
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-26
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-21
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-20
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-26
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-20
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-16
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-08
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-26
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-21
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-19
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-18
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-16
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	9e-26
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	8e-22
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-19
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-19
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-18
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-25
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-23
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	9e-21
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	4e-20
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	7e-19
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-25
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-20
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	9e-19
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-16
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	9e-16
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-24
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-18
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-24
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-22
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	9e-19
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-18
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-10
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-19
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-10
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-23
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-18
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-16
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-16
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-23
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-14
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-12
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-23
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	8e-17
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	8e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	8e-12
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-23
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-16
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-15
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	8e-14
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	7e-23
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-15
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-13
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-12
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	7e-23
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-22
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-17
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-12
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-22
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-16
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-12
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	8e-11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-22
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-14
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	9e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-10
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-22
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-14
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-14
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-13
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-13
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-22
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-17
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-15
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-15
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-14
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-21
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-18
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-16
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-09
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-17
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-13
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-06
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-21
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-19
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	8e-17
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-16
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	8e-16
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	7e-21
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	5e-13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	8e-21
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-19
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-15
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	4e-15
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	8e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-20
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	5e-14
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-13
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-11
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-20
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-15
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-14
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-14
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-14
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	9e-20
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	8e-16
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	6e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-11
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-19
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-15
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	9e-13
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-12
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	5e-11
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-19
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-11
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-19
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-16
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-14
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-14
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	8e-14
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-19
1he7_A	126	High affinity nerve growth factor receptor; transf	4e-13
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-12
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-10
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-19
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-14
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-13
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-13
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	9e-12
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-19
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-11
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-10
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-08
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-19
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-13
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-12
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-19
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-12
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-12
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	6e-19
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-14
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	6e-14
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-13
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-13
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	8e-19
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-13
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	6e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-18
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-13
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-12
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-18
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	7e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-12
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-11
2ens_A	96	Advanced glycosylation END product-specific recept	2e-18
2ens_A	96	Advanced glycosylation END product-specific recept	7e-16
2ens_A	96	Advanced glycosylation END product-specific recept	1e-13
2ens_A	96	Advanced glycosylation END product-specific recept	3e-12
2ens_A	96	Advanced glycosylation END product-specific recept	2e-11
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-18
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	9e-11
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-09
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-09
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-08
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-18
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-15
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-18
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-12
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-18
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-16
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-15
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	8e-14
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	8e-14
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-18
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	7e-16
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-14
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-12
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-18
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-17
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-14
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-13
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-11
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-18
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-14
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-14
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-12
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	9e-18
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-14
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	9e-14
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-13
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	8e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-17
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-12
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	8e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-09
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-17
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	6e-13
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-12
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-11
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	5e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-16
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-15
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-14
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-13
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-16
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-14
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-07
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-16
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	9e-11
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	9e-08
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-06
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	8e-16
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	4e-14
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-11
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-10
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-15
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	9e-10
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-06
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-15
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	8e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	9e-08
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	9e-08
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-15
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	8e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-12
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	4e-15
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-13
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-11
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-15
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	9e-13
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-07
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-14
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-13
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	9e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-13
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-13
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-12
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-12
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	7e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-13
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	9e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-08
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	7e-08
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-13
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-12
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	8e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-13
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-12
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-13
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-11
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-13
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-08
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	7e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-12
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	6e-08
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-12
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-11
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-11
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-10
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	5e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	4e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-10
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	6e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-08
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-06
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-09
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-06
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	4e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	8e-09
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	6e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-05
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	5e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	4e-08
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	4e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	4e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	4e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	7e-08
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-07
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-05
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	4e-07
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	2e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	4e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	8e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	5e-04
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	5e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	6e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	4e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	4e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	5e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	9e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-06
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	1e-05
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	3e-05
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	3e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	3e-05
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	4e-05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	4e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	4e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	9e-05
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	1e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	5e-04
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	2e-04
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	2e-04
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	3e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	4e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	5e-04
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	6e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	9e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  380 bits (978), Expect = e-126
 Identities = 121/574 (21%), Positives = 206/574 (35%), Gaps = 72/574 (12%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            P FIE ++ V +   +P    CKV+G P   + W K+ T+L +   Y +    +V++L 
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
           I      D+G YTCKA N  G    SA L++   +E    P F + LK V      P   
Sbjct: 65  INKVDHSDVGEYTCKAENSVGAVASSAVLVI---KERKLPPSFARKLKDVHETLGFPVAF 121

Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185
           +  + G     + WY+  E +  D      F        L I +        Y+  A N 
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA--TLQILQTDQSHVGQYNCSASNP 179

Query: 186 FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKW 245
            G A   A L L +            P       ++ +    + T +   TGT   ++ W
Sbjct: 180 LGTASSSAKLTLSEHEV--------PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW 231

Query: 246 FKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
            K+ +EI       +   +N   L + + TK   G+Y     N AG+   S  + +    
Sbjct: 232 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 291

Query: 303 AETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG 362
                ++           ++        + G P   V W  D T ++E  +  +    + 
Sbjct: 292 RFIKKLEPSRIVKQDEHTRY-----ECKIGGSPEIKVLWYKDETEIQESSKFRMSFV-ES 345

Query: 363 LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ 422
           +  L +  +  E++G Y+C A N  G A ++ +L V+      E P F K   PV     
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK------EPPVFRKKPHPVETLKG 399

Query: 423 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 482
           +   L+  + G P   + W++ K E+     + +          + I      D   Y  
Sbjct: 400 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE--NFLTSIHILNVDSADIGEY-- 455

Query: 483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVM 542
                                           C+A N  GS TC  +++         + 
Sbjct: 456 -------------------------------QCKASNDVGSDTCVGSIT---------LK 475

Query: 543 ESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
             PRF+K       + G+ V   A +  +E + +
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISV 509

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  350 bits (899), Expect = e-114
 Identities = 126/535 (23%), Positives = 201/535 (37%), Gaps = 69/535 (12%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
              L P F  K++ V      P  F C++ G     ++W KDG  L    +   + + +V
Sbjct: 97  ERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNV 156

Query: 62  STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
           +TL+I+   +  +G Y C A+N  G A+ SA L + E E     P F      V      
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE---VPPFFDLKPVSVDLALGE 213

Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
             T K  VTG     I W +   EI P   + M     T    L++ + T  D   Y+  
Sbjct: 214 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA--TLTVLKVTKGDAGQYTCY 271

Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ-ALLVPKDSTVTLEAEYTGTPT 240
           A N  G+  C A L            V E P  ++ L+ + +V +D     E +  G+P 
Sbjct: 272 ASNVAGKDSCSAQL-----------GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE 320

Query: 241 PEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
            +V W+K+  EI       +   ++V  L +   + + +G Y     N AG A +S S+ 
Sbjct: 321 IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 380

Query: 298 ITVAEA-ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
           +            V                    + G P   V+W  D   ++ GK+  I
Sbjct: 381 VKEPPVFRKKPHPVETLKGADVHL-------ECELQGTPPFQVSWHKDKRELRSGKKYKI 433

Query: 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKP 416
             + + L  + I  V   + G Y C A N VG      ++ ++        P+F K L  
Sbjct: 434 MSE-NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK------APPRFVKKLSD 486

Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
           +         L+AT+ G    S+ W++ K EI+ ++ +                      
Sbjct: 487 ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDN---------------------- 524

Query: 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                         I    N + L  S+      G  TC+ +N AG+  C ATLS
Sbjct: 525 ------------IWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  293 bits (752), Expect = 3e-92
 Identities = 105/400 (26%), Positives = 161/400 (40%), Gaps = 31/400 (7%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            P F  K   V     +   F C V G     +TW KD  E+    +Y +T VE+ +TL 
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 256

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV-IAEAQSPAT 124
           ++  TK D G YTC A+N+ G  +CSA L V E       P+F K L+P  I +      
Sbjct: 257 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------PPRFIKKLEPSRIVKQDEHTR 310

Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
            +  + G P   + WY+ + EI   +   M F       VL +   + +D   Y+ +A N
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSF--VESVAVLEMYNLSVEDSGDYTCEAHN 368

Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
             G A    +L           +V E P   +    +   K + V LE E  GTP  +V 
Sbjct: 369 AAGSASSSTSL-----------KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS 417

Query: 245 WFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
           W K+ +E+ S     I +++ +T + I        G+Y+ +  N+ G     GS+T+   
Sbjct: 418 WHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP 477

Query: 302 -EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
                 + D+          Q         + G     V W  D   +    +      +
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQ-------ATIEGAEPISVAWFKDKGEIVRESDNIWISYS 530

Query: 361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
           + +  L  S   P NAG Y+C   N  G     ATL+V E
Sbjct: 531 ENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  282 bits (724), Expect = 3e-88
 Identities = 109/473 (23%), Positives = 177/473 (37%), Gaps = 76/473 (16%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           E P F +PL+ V A    P TL+  V G P   I WY+   ++     + M+F       
Sbjct: 4   EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA-- 61

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
            L I++    D   Y+ KA N+ G     A LV+++            P+  R L+ +  
Sbjct: 62  SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER--------KLPPSFARKLKDVHE 113

Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYE 280
                V  E    G+   +V W+K+G+ +            NV  L I QT +   G+Y 
Sbjct: 114 TLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYN 173

Query: 281 IRVVNEAGEARTSGSVTITVAEA----ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT 336
               N  G A +S  +T++  E     +   + V +    + +F+         VTG   
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK-------CHVTGTAP 226

Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATL 396
             +TW+ D   ++ G    +    +    L + +V   +AG Y+C A N  G+   +A L
Sbjct: 227 IKITWAKDNREIRPGGNYKMTLVENT-ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285

Query: 397 AVEEKEESGEAPKFTKPLKPV-IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT 455
            V+      E P+F K L+P  I +       +  + G P   + WY+ + EI   +   
Sbjct: 286 GVQ------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFR 339

Query: 456 MEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTC 515
           M F       VL +   + +D   Y                                 TC
Sbjct: 340 MSF--VESVAVLEMYNLSVEDSGDY---------------------------------TC 364

Query: 516 RAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
            A N AGS + + +L          V E P F K P   + + G  V    ++
Sbjct: 365 EAHNAAGSASSSTSL---------KVKEPPVFRKKPHPVETLKGADVHLECEL 408

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  214 bits (547), Expect = 2e-62
 Identities = 85/368 (23%), Positives = 134/368 (36%), Gaps = 63/368 (17%)

Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTK 265
           +E P  + PL+ +       +TL+ +  GTP   + W+K   ++ S     ++ K+NV  
Sbjct: 3   MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA----ETVMMDVRVESHPTASFQ 321
           LVI +      G+Y  +  N  G   +S  + I   +        + DV        +F+
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122

Query: 322 WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
                    + G     V+W  DG  +K+   +      +    L I +    + G Y+C
Sbjct: 123 -------CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNV-ATLQILQTDQSHVGQYNC 174

Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 441
           +A NP+G A ++A L + E E     P F      V        T K  VTG     I W
Sbjct: 175 SASNPLGTASSSAKLTLSEHE---VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW 231

Query: 442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501
            +   EI P   + M     T    L++ + T  D   Y                     
Sbjct: 232 AKDNREIRPGGNYKMTLVENTA--TLTVLKVTKGDAGQY--------------------- 268

Query: 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE-TAKVMDGQ 560
                       TC A NVAG  +C+A L          V E PRFIK  E +  V   +
Sbjct: 269 ------------TCYASNVAGKDSCSAQLG---------VQEPPRFIKKLEPSRIVKQDE 307

Query: 561 SVLFTAQV 568
              +  ++
Sbjct: 308 HTRYECKI 315

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  309 bits (794), Expect = 5e-96
 Identities = 109/589 (18%), Positives = 172/589 (29%), Gaps = 102/589 (17%)

Query: 4   VLAPRFIE--KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT--VE 59
              P+ +   K               C  +G+P+P   W K        +  ++     +
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ 303

Query: 60  SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA 119
              TL I +   ED G Y C   N  G  +    L V                     + 
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA------PLSAKIDPPTQTVDF 357

Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
             PA      TG P  ++ W +  + I                 VL I     +D+ +Y 
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------------VLRIESVKKEDKGMYQ 405

Query: 180 VKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP 239
               N    AE  A L L            + P I +  Q   +    +V L+    G P
Sbjct: 406 CFVRNDRESAEASAELKLG--------GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNP 457

Query: 240 TPEVKWFKNGKEIVSKD--------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR 291
           TPE+ W  +GK+I + D            D V+ L I        G Y+    ++ G A 
Sbjct: 458 TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517

Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
            S  + +        M    + +  T             V G P   + W  D   +   
Sbjct: 518 HSAKLNVYGLPYIRQMEKKAIVAGETLIVT-------CPVAGYPIDSIVWERDNRALPIN 570

Query: 352 KEVTIYQDTDGLCKLAISEV-FPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPK 409
           ++  ++ +      L I  V    +   Y+C A N  G +   +  + V         P+
Sbjct: 571 RKQKVFPNGT----LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL------PR 620

Query: 410 F-TKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVL 467
                 +   A+     TL  +V G   P +I W    + I  D G T       G  VL
Sbjct: 621 IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG-SVL 679

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
           +I          +                                 TC A N+AG    T
Sbjct: 680 TIEAVEASHAGNF---------------------------------TCHARNLAGHQQFT 706

Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
             L         +V   PR+I  P       G       +     + ++
Sbjct: 707 TPL---------NVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQV 746

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  303 bits (776), Expect = 2e-93
 Identities = 103/536 (19%), Positives = 175/536 (32%), Gaps = 84/536 (15%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
                           +PA+FTC+  G+P+ T++W KDG  +  +E            L 
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLR 392

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
           I +  KED G+Y C   N    A  SA L +  + +    P   +  +    E      L
Sbjct: 393 IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD---PPVIRQAFQEETMEPGPSVFL 449

Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT---TGECVLSISEATPQDEAVYSVKA 182
           K    G PTP I W    ++I  ++ + +    T        L+I+     D  +Y   A
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIA 509

Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE 242
            +  G AE  A L            V   P I R ++   +    T+ +     G P   
Sbjct: 510 KSKVGVAEHSAKLN-----------VYGLPYI-RQMEKKAIVAGETLIVTCPVAGYPIDS 557

Query: 243 VKWFKNGKEI-VSKDIETKDNVTKLVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTITV 300
           + W ++ + + +++  +   N T L+I+   + +    Y     N+ G +   GS+ + V
Sbjct: 558 IVWERDNRALPINRKQKVFPNGT-LIIENVERNSDQATYTCVAKNQEGYS-ARGSLEVQV 615

Query: 301 AEAETV----MMDVRVESHPTASFQWFIHSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVT 355
                +      +   +     +           V G   PL + W+ DG  + E   +T
Sbjct: 616 MVLPRIIPFAFEEGPAQVGQYLTLHC-------SVPGGDLPLNIDWTLDGQAISEDLGIT 668

Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK 415
             +       L I  V   +AG ++C A N  G       L V         P++     
Sbjct: 669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY------VPPRWILEPT 722

Query: 416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF-NPTTGECVLSISEATP 474
                  S A ++    G P P + W +   +   +     +  N    E  L +     
Sbjct: 723 DKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQK 782

Query: 475 QDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530
            +E  Y                                  C A N  GS      +
Sbjct: 783 TNEGYY---------------------------------LCEAINGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  296 bits (760), Expect = 5e-91
 Identities = 115/587 (19%), Positives = 171/587 (29%), Gaps = 101/587 (17%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVE---GHPLPTMTWQKDGTELHATEHYLIT--TV 58
           V+A  +   +      +   A+  C +       +  ++W  D  E +           V
Sbjct: 136 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195

Query: 59  ESVSTLEIINPTKED-IGVYTCKATNIGGVATC---SANLIVLEKEESGEAPKFTKPLKP 114
                L I     ED    Y C+  +     T    +   +V+ +  S   PK     K 
Sbjct: 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255

Query: 115 --VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 172
                   S   L     G P P   WY+  E         +          L I +A  
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 315

Query: 173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
           +D   Y     N+ G       L            V    +         V         
Sbjct: 316 EDSGKYLCVVNNSVGGESVETVLT-----------VTAPLSAKIDPPTQTVDFGRPAVFT 364

Query: 233 AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
            +YTG P   V W K+GK I   +       + L I+   K+  G Y+  V N+   A  
Sbjct: 365 CQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAEA 417

Query: 293 SGSVTITVAEA----ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
           S  + +              +  +E  P+   +        V  G PTP ++W  DG  +
Sbjct: 418 SAELKLGGRFDPPVIRQAFQEETMEPGPSVFLK-------CVAGGNPTPEISWELDGKKI 470

Query: 349 KEGKEVTIYQDT----DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
                  + Q      D +  L I+ V   + GLY C A + VG A  +A L V      
Sbjct: 471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL--- 527

Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
              P   +  K  I   +    +   V G P  SI W R    +  +    +  N T   
Sbjct: 528 ---PYIRQMEKKAIVAGE-TLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT--- 580

Query: 465 CVLSISEAT-PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG- 522
             L I       D+A Y                                 TC A+N  G 
Sbjct: 581 --LIIENVERNSDQATY---------------------------------TCVAKNQEGY 605

Query: 523 SVTCTATLSLLPESEVTDVMESPRFIK-TPETAKVMDGQSVLFTAQV 568
           S   +  +          VM  PR I    E      GQ +     V
Sbjct: 606 SARGSLEVQ---------VMVLPRIIPFAFEEGPAQVGQYLTLHCSV 643

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  286 bits (733), Expect = 4e-87
 Identities = 108/595 (18%), Positives = 181/595 (30%), Gaps = 90/595 (15%)

Query: 2   AEVLAPRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES 60
           A+   P F+++    +       A   CK  G+P+P + W +        +   +  + S
Sbjct: 34  ADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTA-VGDVPGLRQISS 92

Query: 61  VSTLEIINPTKEDI------GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
              L       ED        VY C A N  G        +      +  A  +   +  
Sbjct: 93  DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR-----AVVAQYYEADVNK 147

Query: 115 VIAEAQSPATLKATV---TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 171
                 + A +K  +          + W+  +EE                   L I E  
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 207

Query: 172 PQD-EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVT 230
           P+D    Y  +  +        +    R   T      +     +           ST+ 
Sbjct: 208 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMA 267

Query: 231 LEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK-----LVIKQTTKKTTGKYEIRVVN 285
           L     G P P  +W+K  +    K     ++  K     L+IK    + +GKY   V N
Sbjct: 268 LLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 327

Query: 286 EAGEARTSGSVTITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD 344
             G       +T+T    A+       V+    A F           TG P   V+W  D
Sbjct: 328 SVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF-------TCQYTGNPIKTVSWMKD 380

Query: 345 GTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
           G  +   + V           L I  V  E+ G+Y C   N    A A+A L +  +   
Sbjct: 381 GKAIGHSESV-----------LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF-- 427

Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT--- 461
            + P   +  +    E      LK    G PTP I W    ++I  ++ + +    T   
Sbjct: 428 -DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG 486

Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
                L+I+     D  +Y                                  C A++  
Sbjct: 487 DVVSYLNITSVHANDGGLY---------------------------------KCIAKSKV 513

Query: 522 GSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
           G    +A L         +V   P +I+  E   ++ G++++ T  V       I
Sbjct: 514 GVAEHSAKL---------NVYGLP-YIRQMEKKAIVAGETLIVTCPVAGYPIDSI 558

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  249 bits (637), Expect = 2e-73
 Identities = 83/528 (15%), Positives = 145/528 (27%), Gaps = 98/528 (18%)

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSP 122
           + + N   + + ++   A    G  T +AN    ++    + P F K P   +     + 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQ----KGPVFLKEPTNRIDFSNSTG 56

Query: 123 ATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQD------E 175
           A ++   +G P P I W R     +    G     +       L       +D       
Sbjct: 57  AEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK----LVFPPFRAEDYRQEVHA 112

Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE- 234
            VY+  A N FG    R   V          R + A      +    V + ++  ++   
Sbjct: 113 QVYACLARNQFGSIISRDVHV----------RAVVAQYYEADVNKEHVIRGNSAVIKCLI 162

Query: 235 --YTGTPTPEVKWFKNGKEIVSKDIETKDNVT-----KLVIKQTTKK-TTGKYEIRVVNE 286
             +       V W  + +E      E           +L I++   +     Y+ R  + 
Sbjct: 163 PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHR 222

Query: 287 AG-EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPV----VVTGKPTPLVTW 341
              E R S +    V          +V S      + +  S  +       G P P+  W
Sbjct: 223 LTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRW 282

Query: 342 SHDGTPMKEGKEVTIYQDTDGL-CKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
                     + V +      +   L I +   E++G Y C   N VG       L V  
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT- 341

Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
                              +   PA      TG P  ++ W +  + I            
Sbjct: 342 -----APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------- 389

Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
                VL I     +D+ +Y                                  C   N 
Sbjct: 390 -----VLRIESVKKEDKGMY---------------------------------QCFVRND 411

Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
             S   +A L      ++    + P   +  +   +  G SV      
Sbjct: 412 RESAEASAEL------KLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA 453

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  236 bits (604), Expect = 1e-68
 Identities = 83/410 (20%), Positives = 131/410 (31%), Gaps = 44/410 (10%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV--- 58
                P   +  Q             C   G+P P ++W+ DG ++   + Y +      
Sbjct: 425 GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTV 484

Query: 59  --ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI 116
             + VS L I +    D G+Y C A +  GVA  SA L V         P   +  K  I
Sbjct: 485 NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL------PYIRQMEKKAI 538

Query: 117 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT-PQDE 175
              +    +   V G P  SI W R    +  +    +  N T     L I       D+
Sbjct: 539 VAGE-TLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT-----LIIENVERNSDQ 592

Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV-RPLQALLVPKDSTVTLEAE 234
           A Y+  A N  G +  R +L +         +V+  P I+    +         +TL   
Sbjct: 593 ATYTCVAKNQEGYSA-RGSLEV---------QVMVLPRIIPFAFEEGPAQVGQYLTLHCS 642

Query: 235 YTGTPTP-EVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289
             G   P  + W  +G+ I               + L I+       G +     N AG 
Sbjct: 643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH 702

Query: 290 ARTSGSVTITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
            + +  + + V         D        A              G P P VTW       
Sbjct: 703 QQFTTPLNVYVPPRWILEPTDKAFAQGSDAKV-------ECKADGFPKPQVTWKKAVGDT 755

Query: 349 KEGKEVTIYQDTDGL--CKLAISEVFPENAGLYSCTAVNPVGEAVAAATL 396
               +     D   +    L +  +   N G Y C A+N +G  ++A  +
Sbjct: 756 PGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  188 bits (478), Expect = 2e-51
 Identities = 67/308 (21%), Positives = 108/308 (35%), Gaps = 32/308 (10%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
            V    +I +++       +  + TC V G+P+ ++ W++D   L       +       
Sbjct: 523 NVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF---PNG 579

Query: 63  TLEIINPTK-EDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKF-TKPLKPVIAEA 119
           TL I N  +  D   YTC A N  G  A  S  + V+        P+      +   A+ 
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL------PRIIPFAFEEGPAQV 633

Query: 120 QSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
               TL  +V G   P +I W    + I  D G T       G  VL+I          +
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG-SVLTIEAVEASHAGNF 692

Query: 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238
           +  A N  G  +    L            V   P  +         + S   +E +  G 
Sbjct: 693 TCHARNLAGHQQFTTPLN-----------VYVPPRWILEPTDKAFAQGSDAKVECKADGF 741

Query: 239 PTPEVKWFKNGKEIVS--KDIETKDNVTK----LVIKQTTKKTTGKYEIRVVNEAGEART 292
           P P+V W K   +     KD++  DN+      L +    K   G Y    +N  G   +
Sbjct: 742 PKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLS 801

Query: 293 SGSVTITV 300
           +  + I+V
Sbjct: 802 A-VIMISV 808

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 81.9 bits (202), Expect = 2e-16
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT---VESVS 62
            PR+I +       Q   A   CK +G P P +TW+K   +       L  +        
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG 773

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEES 102
           TL + N  K + G Y C+A N  G    +  +I ++    
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHH 813

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  267 bits (683), Expect = 3e-80
 Identities = 86/608 (14%), Positives = 170/608 (27%), Gaps = 86/608 (14%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
           + +      +  +  ++ +  +  C      L      +   +    +   I+  +S   
Sbjct: 126 IASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS-WDSKKG 184

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
             I +      G+  C+A            ++V+             P   +        
Sbjct: 185 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI--YDVVLSPSHGIELSVGEKL 242

Query: 124 TLKATVTGRPTPSICWY--------RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
            L  T        I +         + K+ +  D               L+I   T  D+
Sbjct: 243 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302

Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV---RPLQALLVPKDSTVTLE 232
            +Y+  A +     +    +           RV E P +         +       V + 
Sbjct: 303 GLYTCAASSGLMTKKNSTFV-----------RVHEKPFVAFGSGMESLVEATVGERVRIP 351

Query: 233 AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
           A+Y G P PE+KW+KNG  + S       +V  L I + +++ TG Y + + N   + + 
Sbjct: 352 AKYLGYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTVILTNPISKEKQ 409

Query: 293 SGSVTITVAEA------------------ETVMMDVRVESHPT-ASFQWFIHSEPVV--- 330
           S  V++ V                      T  +   V + P      W+   E      
Sbjct: 410 SHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANE 469

Query: 331 ----------VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
                        +    V     G  ++  K      +        +       + LY 
Sbjct: 470 PSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYK 529

Query: 381 CTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC 440
           C AVN VG      +  V         P+ T        E Q   +L  T       ++ 
Sbjct: 530 CEAVNKVGRGERVISFHVTRG------PEITLQPDMQPTE-QESVSLWCTADRSTFENLT 582

Query: 441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
           WY+   + LP +   +                TP  + + ++   +      +  +  ++
Sbjct: 583 WYKLGPQPLPIHVGELP---------------TPVCKNLDTLWKLNATMFSNSTNDILIM 627

Query: 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQ 560
            +   +    GD  C A++            L           +P      E      G+
Sbjct: 628 ELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL-----TVLERVAPTITGNLENQTTSIGE 682

Query: 561 SVLFTAQV 568
           S+  +   
Sbjct: 683 SIEVSCTA 690

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  258 bits (659), Expect = 6e-77
 Identities = 77/588 (13%), Positives = 151/588 (25%), Gaps = 62/588 (10%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES- 60
             +  PR   +   +          TC+ +      + W     +  + +   +T     
Sbjct: 27  VSLDLPRLSIQKDILTIKANTTLQITCRGQ----RDLDWLWPNNQSGSEQRVEVTECSDG 82

Query: 61  --VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE 118
               TL I      D G Y C        +     +          +      +  +   
Sbjct: 83  LFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFI-ASVSDQHGVVYITEN 141

Query: 119 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
                 +    +          R  E+    +G+ + ++   G    +I         + 
Sbjct: 142 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG---FTIPSYMISYAGMV 198

Query: 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238
             +A       +    +V+     I          ++ P   + +     + L       
Sbjct: 199 FCEAKINDESYQSIMYIVVVVGYRI-------YDVVLSPSHGIELSVGEKLVLNCTARTE 251

Query: 239 PTPEV--KWFKNGKEIVSKDIETKDNVTK-----------LVIKQTTKKTTGKYEIRVVN 285
               +   W     +   K +  +D  T+           L I   T+   G Y     +
Sbjct: 252 LNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 311

Query: 286 EAGEARTSGSVTI----TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
                + S  V +     VA    +   V                      G P P + W
Sbjct: 312 GLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP-------AKYLGYPPPEIKW 364

Query: 342 SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
             +G P++    +           L I EV   + G Y+    NP+ +   +  +++   
Sbjct: 365 YKNGIPLESNHTIKAGH------VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY 418

Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNP 460
                  K             +  TL  TV   P P  I WY   EE   +         
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTT-QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVT 477

Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
               C    S    Q      ++ +  +  ++   N++V  +     +      C A N 
Sbjct: 478 NPYPCEEWRSVEDFQGG--NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNK 535

Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
            G      +           V   P     P+  +  + +SV      
Sbjct: 536 VGRGERVISFH---------VTRGPEITLQPDM-QPTEQESVSLWCTA 573

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  254 bits (650), Expect = 1e-75
 Identities = 89/608 (14%), Positives = 168/608 (27%), Gaps = 123/608 (20%)

Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLI--------- 55
           +    +     +     +  +  C         + +  +          L+         
Sbjct: 223 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282

Query: 56  -TTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
               + +STL I   T+ D G+YTC A++       S  + V EK         +     
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK---PFVAFGSGMESL 339

Query: 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
           V A       + A   G P P I WY+    +  ++ HT++         L+I E + +D
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPL--ESNHTIKAGHV-----LTIMEVSERD 392

Query: 175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE 234
              Y+V   N   + +    + L        P++ E   I            +T TL   
Sbjct: 393 TGNYTVILTNPISKEKQSHVVSL---VVYVPPQIGEKSLISPVDS---YQYGTTQTLTCT 446

Query: 235 YTGTPTPE-VKWFKNGKEIVSKD------------------------------------I 257
               P P  + W+   +E  + +                                    +
Sbjct: 447 VYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFAL 506

Query: 258 ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------TVAEAET 305
               N T   +       +  Y+   VN+ G      S  +               E E+
Sbjct: 507 IEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQES 566

Query: 306 VMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK 365
           V +    +     +  W+      +             +   + +         T+ +  
Sbjct: 567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626

Query: 366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPA 425
           + +     ++ G Y C A +   +        +   E    AP  T  L+          
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER--VAPTITGNLENQTTSIGESI 684

Query: 426 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485
            +  T +G P P I W++  E ++ D+G  +      G   L+I     +DE +Y     
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSGIVL----KDGNRNLTIRRVRKEDEGLY----- 735

Query: 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545
                                       TC+A +V G     A            +  + 
Sbjct: 736 ----------------------------TCQACSVLGCAKVEAFFI---------IEGAQ 758

Query: 546 RFIKTPET 553
                  T
Sbjct: 759 EKTNLERT 766

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  206 bits (526), Expect = 4e-58
 Identities = 64/515 (12%), Positives = 135/515 (26%), Gaps = 94/515 (18%)

Query: 73  DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR 132
            + ++ C  T    V   S +L         + P+ +     +  +A +   +  T  G+
Sbjct: 8   AVALWLCVETRAASVGLPSVSL---------DLPRLSIQKDILTIKANTTLQI--TCRGQ 56

Query: 133 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR 192
                 W    +          E +       L+I +    D   Y      T   +   
Sbjct: 57  RDLDWLWP-NNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIY 115

Query: 193 ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI 252
             +          P +  + +    +  +   K+ TV +    + +        +  ++ 
Sbjct: 116 VYV-----QDYRSPFI-ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR 169

Query: 253 VSKDIE--TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM-- 308
              D    + D+     I        G             ++   + + V      ++  
Sbjct: 170 FVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLS 229

Query: 309 ---DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQD------ 359
               + +                     +    + ++ +    K   +  + +D      
Sbjct: 230 PSHGIELSVGEKLVLN-------CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282

Query: 360 ---TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKP 416
                 L  L I  V   + GLY+C A + +     +  + V EK         +     
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK---PFVAFGSGMESL 339

Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
           V A       + A   G P P I WY+    +  ++ HT++         L+I E + +D
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPL--ESNHTIKAGHV-----LTIMEVSERD 392

Query: 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPES 536
              Y                                 T    N       +  +SL    
Sbjct: 393 TGNY---------------------------------TVILTNPISKEKQSHVVSL---- 415

Query: 537 EVTDVMESPRFIKTPETAK---VMDGQSVLFTAQV 568
               V   P+  +    +       G +   T  V
Sbjct: 416 ---VVYVPPQIGEKSLISPVDSYQYGTTQTLTCTV 447

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  205 bits (522), Expect = 1e-57
 Identities = 85/474 (17%), Positives = 147/474 (31%), Gaps = 96/474 (20%)

Query: 3   EVLAPRFIEKIQPVVSHQE----QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV 58
            V    F+     + S  E    +      K  G+P P + W K+G  L +       T+
Sbjct: 323 RVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH-----TI 377

Query: 59  ESVSTLEIINPTKEDIGVYTCKATNIGGVATCS--ANLIVLEKEESGEAPKFTKPLKPVI 116
           ++   L I+  ++ D G YT   TN       S   +L+V    + GE      P+    
Sbjct: 378 KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKS-LISPVDSYQ 436

Query: 117 AEAQSPATLKATVTGRPTP-SICWYRGKEEILPD-------------------------- 149
               +  TL  TV   P P  I WY   EE   +                          
Sbjct: 437 YG--TTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494

Query: 150 -----NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID 204
                N +         + V ++        A+Y  +AVN  GR E   +          
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF--------- 545

Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI------- 257
              V   P I      +   +  +V+L      +    + W+K G + +   +       
Sbjct: 546 --HVTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPV 602

Query: 258 ----------------ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
                            + +++  + +K  + +  G Y     +   + R      +TV 
Sbjct: 603 CKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL 662

Query: 302 EAE-----TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
           E         + +       +              +G P P + W  D   + E   + +
Sbjct: 663 ERVAPTITGNLENQTTSIGESIEVS-------CTASGNPPPQIMWFKDNETLVEDSGIVL 715

Query: 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKF 410
               DG   L I  V  E+ GLY+C A + +G A   A   +E  +E     + 
Sbjct: 716 ---KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  171 bits (435), Expect = 8e-46
 Identities = 67/365 (18%), Positives = 113/365 (30%), Gaps = 70/365 (19%)

Query: 7   PRFIEK--IQPVVSHQE-QPALFTCKVEGHPLP-TMTWQKDGTEL--------------- 47
           P+  EK  I PV S+Q       TC V   P P  + W     E                
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480

Query: 48  ------------------HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVAT 89
                                  + +   ++ +   ++        +Y C+A N  G   
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540

Query: 90  CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD 149
              +  V         P+ T        E Q   +L  T       ++ WY+   + LP 
Sbjct: 541 RVISFHVTRG------PEITLQPDMQPTE-QESVSLWCTADRSTFENLTWYKLGPQPLPI 593

Query: 150 NG------------------HTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191
           +                    TM  N T    ++ +  A+ QD+  Y   A +   +   
Sbjct: 594 HVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRH 653

Query: 192 RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE 251
                L             APTI   L+        ++ +    +G P P++ WFK+ + 
Sbjct: 654 CVVRQLTV-------LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNET 706

Query: 252 IV-SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDV 310
           +V    I  KD    L I++  K+  G Y  +  +  G A+      I  A+ +T +   
Sbjct: 707 LVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766

Query: 311 RVESH 315
               H
Sbjct: 767 HHHHH 771

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  143 bits (361), Expect = 3e-36
 Identities = 46/425 (10%), Positives = 93/425 (21%), Gaps = 94/425 (22%)

Query: 167 ISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD 226
           +        A++               +              L+ P +      L +  +
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVS--------------LDLPRLSIQKDILTIKAN 46

Query: 227 STVTLEAEYTGTPTPEVKWFKNGKEIVSK----DIETKDNVTKLVIKQTTKKTTGKYEIR 282
           +T+ +     G    +  W  N      +    +         L I +     TG Y+  
Sbjct: 47  TTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCF 104

Query: 283 VVNEAGEARTSGSVT------ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT 336
                  +     V       I     +  ++ +    + T          P + +    
Sbjct: 105 YRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVI-------PCLGSISNL 157

Query: 337 P--LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394
              L     +   + +G  ++     D      I       AG+  C A        +  
Sbjct: 158 NVSLCARYPEKRFVPDGNRISW----DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIM 213

Query: 395 TLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY--------RGKE 446
            + V              P   +         L  T        I +         + K+
Sbjct: 214 YIVVVVGYRI--YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK 271

Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
            +  D               L+I   T  D+ +Y                          
Sbjct: 272 LVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY-------------------------- 305

Query: 507 RDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPR---FIKTPETAKVMDGQSVL 563
                  TC A +   +   +  +          V E P            +   G+ V 
Sbjct: 306 -------TCAASSGLMTKKNSTFV---------RVHEKPFVAFGSGMESLVEATVGERVR 349

Query: 564 FTAQV 568
             A+ 
Sbjct: 350 IPAKY 354

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  245 bits (627), Expect = 3e-77
 Identities = 84/297 (28%), Positives = 129/297 (43%), Gaps = 23/297 (7%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            P F  K   V     +   F C V G     +TW KD  E+    +Y +T VE+ +TL 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ-SPAT 124
           ++  TK D G YTC A+N+ G  +CSA L V E       P+F K L+P     Q     
Sbjct: 65  VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------PRFIKKLEPSRIVKQDEHTR 118

Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
            +  + G P   + WY+ + EI   +   M F       VL +   + +D   Y+ +A N
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE--SVAVLEMYNLSVEDSGDYTCEAHN 176

Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
             G A    +L           +V E P   +    +   K + V LE E  GTP  +V 
Sbjct: 177 AAGSASSSTSL-----------KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS 225

Query: 245 WFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           W K+ +E+ S     I +++ +T + I        G+Y+ +  N+ G     GS+T+
Sbjct: 226 WHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  214 bits (548), Expect = 1e-65
 Identities = 61/328 (18%), Positives = 110/328 (33%), Gaps = 54/328 (16%)

Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTK 265
           +  P       ++ +    + T +   TGT   ++ W K+ +EI       +   +N   
Sbjct: 3   MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA-EAETVMMDVR-VESHPTASFQWF 323
           L + + TK   G+Y     N AG+   S  + +         +   R V+      +   
Sbjct: 63  LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY--- 119

Query: 324 IHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
                  + G P   V W  D T ++E  +  +         L +  +  E++G Y+C A
Sbjct: 120 ----ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV-AVLEMYNLSVEDSGDYTCEA 174

Query: 384 VNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR 443
            N  G A ++ +L V+      E P F K   PV     +   L+  + G P   + W++
Sbjct: 175 HNAAGSASSSTSLKVK------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 228

Query: 444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503
            K E+     + +          + I      D   Y                       
Sbjct: 229 DKRELRSGKKYKIMSE--NFLTSIHILNVDSADIGEY----------------------- 263

Query: 504 KITRDQIGDVTCRAENVAGSVTCTATLS 531
                      C+A N  GS TC  +++
Sbjct: 264 ----------QCKASNDVGSYTCVGSIT 281

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  211 bits (538), Expect = 3e-64
 Identities = 68/301 (22%), Positives = 109/301 (36%), Gaps = 26/301 (8%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
             P F      V        T K  VTG     I W +   EI P   + M     T   
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA-- 61

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL-L 222
            L++ + T  D   Y+  A N  G+  C A L            V E P  ++ L+   +
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL-----------GVQEPPRFIKKLEPSRI 110

Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKY 279
           V +D     E +  G+P  +V W+K+  EI       +   ++V  L +   + + +G Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170

Query: 280 EIRVVNEAGEARTSGSVTITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPL 338
                N AG A +S S+ +            V          +         + G P   
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE-------CELQGTPPFQ 223

Query: 339 VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
           V+W  D   ++ GK+  I  + + L  + I  V   + G Y C A N VG      ++ +
Sbjct: 224 VSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

Query: 399 E 399
           +
Sbjct: 283 K 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  155 bits (394), Expect = 2e-43
 Identities = 56/263 (21%), Positives = 92/263 (34%), Gaps = 59/263 (22%)

Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
            + V +    + +F+         VTG     +TW+ D   ++ G    +    +    L
Sbjct: 12  PVSVDLALGESGTFK-------CHVTGTAPIKITWAKDNREIRPGGNYKMTLV-ENTATL 63

Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ-SPA 425
            + +V   +AG Y+C A N  G+   +A L V+E       P+F K L+P     Q    
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------PRFIKKLEPSRIVKQDEHT 117

Query: 426 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485
             +  + G P   + WY+ + EI   +   M F       VL +   + +D   Y     
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE--SVAVLEMYNLSVEDSGDY----- 170

Query: 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545
                                       TC A N AGS + + +L          V E P
Sbjct: 171 ----------------------------TCEAHNAAGSASSSTSLK---------VKEPP 193

Query: 546 RFIKTPETAKVMDGQSVLFTAQV 568
            F K P   + + G  V    ++
Sbjct: 194 VFRKKPHPVETLKGADVHLECEL 216

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 89.8 bits (223), Expect = 5e-20
 Identities = 38/164 (23%), Positives = 51/164 (31%), Gaps = 45/164 (27%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
             P F      V        T K  VTG     I W +   EI P   + M     T   
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA-- 61

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
            L++ + T  D   Y                                 TC A NVAG  +
Sbjct: 62  TLTVLKVTKGDAGQY---------------------------------TCYASNVAGKDS 88

Query: 526 CTATLSLLPESEVTDVMESPRFIKTPETAK-VMDGQSVLFTAQV 568
           C+A L          V E PRFIK  E ++ V   +   +  ++
Sbjct: 89  CSAQLG---------VQEPPRFIKKLEPSRIVKQDEHTRYECKI 123

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  239 bits (611), Expect = 2e-73
 Identities = 84/405 (20%), Positives = 145/405 (35%), Gaps = 34/405 (8%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVES---- 60
           +  F+ +    V+ +    L  C  E    +P + W+KDG  L          + +    
Sbjct: 21  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80

Query: 61  VSTLEIINPTKEDIGVYTCKATN--IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE 118
           +  +      K D G+Y C+A+    G + + +A ++V          +F    + + A 
Sbjct: 81  IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP------LRFLSQTESITAF 134

Query: 119 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
                 LK  V G P P+I W + ++++ P  G +      +G   L IS   P D  VY
Sbjct: 135 MGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVY 192

Query: 179 SVKAVNTFG-RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237
              A N    R    A + +        P +      ++    ++  +     LE   +G
Sbjct: 193 RCSARNPASTRTGNEAEVRIL-----SDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSG 247

Query: 238 TPTPEVKWFKNGKEI-VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296
            P P   W +  + I +     +    + L+I   T   +G Y   V  +      S  +
Sbjct: 248 YPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAEL 307

Query: 297 TITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
           T+ V         ++         F          V+GKP P V W  +G  +       
Sbjct: 308 TVLVPPWFLNHPSNLYAYESMDIEF-------ECAVSGKPVPTVNWMKNGDVVIPSDYFQ 360

Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
           I   ++    L I  V   + G Y C A N  G A ++A L V +
Sbjct: 361 IVGGSN----LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  212 bits (541), Expect = 3e-63
 Identities = 76/463 (16%), Positives = 139/463 (30%), Gaps = 77/463 (16%)

Query: 80  KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSIC 138
           +  +    +    +           +  F       +        L  +    R  P I 
Sbjct: 2   RWGSELESSHHHHHHGGRR------SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIK 55

Query: 139 WYRGKEEILPDNGHTMEFNPTTGECVLSI--SEATPQDEAVYSVKAVNTFGRAECRANLV 196
           W +    +        +  P     + +I  S     DE +Y  +A      +       
Sbjct: 56  WKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115

Query: 197 LRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD 256
           +          V      +   +++      TV L+ E  G P P + W KN +++    
Sbjct: 116 VM---------VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP 166

Query: 257 IETKDNVTK---LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE 313
            +++  V     L I +     +G Y     N A   RT     + +     +   +   
Sbjct: 167 GDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST-RTGNEAEVRILSDPGLHRQLYFL 225

Query: 314 SHPTASFQWFIHSEPVV----VTGKPTPLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLAI 368
             P+      I  +  V    V+G P P  TW      ++   K+ ++   ++    L I
Sbjct: 226 QRPSN--VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN----LLI 279

Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK 428
           S V  +++G Y+C          A+A L V         P F      + A        +
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTVL------VPPWFLNHPSNLYAYESMDIEFE 333

Query: 429 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE 488
             V+G+P P++ W +  + ++P +   +          L I      DE  Y        
Sbjct: 334 CAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN-----LRILGVVKSDEGFY-------- 380

Query: 489 TKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                                     C AEN AG+   +A L 
Sbjct: 381 -------------------------QCVAENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  178 bits (454), Expect = 9e-51
 Identities = 65/401 (16%), Positives = 112/401 (27%), Gaps = 79/401 (19%)

Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-P 239
           +  +    +    +                +   V      +  +   V L         
Sbjct: 2   RWGSELESSHHHHHH-----------GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRG 50

Query: 240 TPEVKWFKNGKEIVSKDIETK-------DNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
            P +KW K+G  +     + K         +  ++  +  K   G Y+         +  
Sbjct: 51  VPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSII 110

Query: 293 SGSVTITVAEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK 349
           S +  + VA      +    +      T             V G P P + W  +   + 
Sbjct: 111 SRTAKVMVAGPLRFLSQTESITAFMGDTVLL-------KCEVIGDPMPTIHWQKNQQDLN 163

Query: 350 EGKEVTIYQ-DTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEA 407
                +       G   L IS + P ++G+Y C+A NP        A + +         
Sbjct: 164 PIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQ 221

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
             F +    VIA     A L+  V+G P PS  W RG+E I   +        +     L
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN----L 277

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
            IS  T  D   Y                                 TC       +++ +
Sbjct: 278 LISNVTDDDSGTY---------------------------------TCVVTYKNENISAS 304

Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
           A L+         V+  P F+  P      +   + F   V
Sbjct: 305 AELT---------VLVPPWFLNHPSNLYAYESMDIEFECAV 336

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  236 bits (603), Expect = 2e-72
 Identities = 84/410 (20%), Positives = 132/410 (32%), Gaps = 38/410 (9%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTM-TWQKDGTELHATEHYLITTVESVSTL 64
            P   ++   V+  +  P +  C +EG+      +W+KDG   +  EH      +   +L
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE-GSL 64

Query: 65  EIINPTKEDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
             + P   D G Y C A    GVA+    +                            P 
Sbjct: 65  VFLRPQASDEGHYQCFAETPAGVASSRVISFRK------TYLIASPAKTHEKTPIEGRPF 118

Query: 124 TLKATV-TGRPTPSICWYRGKEEILPDNGHT-----MEFNPTTGECVLSISEATPQDEAV 177
            L   +    P P I W +      P+   T     +   P        +++    D   
Sbjct: 119 QLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178

Query: 178 YSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237
           Y   A N     E        K  T D       P      + ++        +   Y  
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGS 238

Query: 238 TPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
            P     +FKNGK++            + +  +L+ K T  +  G Y   V N  G+ + 
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298

Query: 293 SGSVTITVAEA----ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
             S+ +TV  A    +     + V+     +        P  VTG P P V WSH+  P+
Sbjct: 299 H-SLKLTVVSAPKYEQKPEKVIVVKQGQDVTI-------PCKVTGLPAPNVVWSHNAKPL 350

Query: 349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
             G+       TD    L I  V   + G Y C A N  G+      + V
Sbjct: 351 SGGR----ATVTDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  187 bits (476), Expect = 5e-54
 Identities = 71/449 (15%), Positives = 112/449 (24%), Gaps = 81/449 (18%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYR-GKEEILPDNGHTMEFNPTTG 161
           + P        V+    +P  L+  + G        W + GK     ++   +  +  + 
Sbjct: 5   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS- 63

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
              L        DE  Y   A    G A  R              R              
Sbjct: 64  ---LVFLRPQASDEGHYQCFAETPAGVASSRVISF----------RKTYLIASPAKTHEK 110

Query: 222 LVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVSKDIETKDNVT-------KLVIKQTTK 273
              +     L+       P P + W K           T  +          L     TK
Sbjct: 111 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTK 170

Query: 274 KT---TGKYEIRVVNEAGEA-RTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPV 329
           +      KY     N A +         I     +             +        +  
Sbjct: 171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT 230

Query: 330 ----VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLYSCTAV 384
               +    P     +  +G  +    E  I +      K L      PE+ G+Y+C   
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290

Query: 385 NPVGEAVAA-ATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTPSICWY 442
           N VG+       L V        APK+  KP K ++ +     T+   VTG P P++ W 
Sbjct: 291 NGVGKPQKHSLKLTVV------SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS 344

Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
               + L     T+  +       L I      D+  Y                      
Sbjct: 345 HN-AKPLSGGRATVTDS------GLVIKGVKNGDKGYY---------------------- 375

Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLS 531
                       CRA N  G       + 
Sbjct: 376 -----------GCRATNEHGDKYFETLVQ 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  166 bits (422), Expect = 3e-46
 Identities = 61/380 (16%), Positives = 114/380 (30%), Gaps = 68/380 (17%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKD--IETKDNVT 264
           V + P +      +L  +++   LE    G     +  W K+GK    ++     + +  
Sbjct: 3   VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTASFQ 321
            LV  +      G Y+      AG A +S  ++              +            
Sbjct: 63  SLVFLRPQASDEGHYQCFAETPAGVA-SSRVISFRKTYLIASPAKTHEKTPIEGRPFQL- 120

Query: 322 WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT-----IYQDTDG-LCKLAISEVFPEN 375
                + V+    P PL+TW    +      +VT     I    DG L    +++    +
Sbjct: 121 -----DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSD 175

Query: 376 AGLYSCTAVNPVGE-----AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKAT 430
              Y CTA N   +              ++       P      K ++A+A     +   
Sbjct: 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM 235

Query: 431 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
               P     +++  +++  +    +  +  T    L      P+DE VY          
Sbjct: 236 YGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVY---------- 285

Query: 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLLPESEVTDVMESPRFIK 549
                                  TC  +N  G     +  L+         V+ +P++ +
Sbjct: 286 -----------------------TCEVDNGVGKPQKHSLKLT---------VVSAPKYEQ 313

Query: 550 TPETA-KVMDGQSVLFTAQV 568
            PE    V  GQ V    +V
Sbjct: 314 KPEKVIVVKQGQDVTIPCKV 333

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  105 bits (264), Expect = 8e-25
 Identities = 36/255 (14%), Positives = 59/255 (23%), Gaps = 51/255 (20%)

Query: 327 EPVV----VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
            P V    + G    +  +W  DG      +     +  +G   L        + G Y C
Sbjct: 22  NPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG--SLVFLRPQASDEGHYQC 79

Query: 382 TAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSI 439
            A  P G A     +                            P  L   +    P P I
Sbjct: 80  FAETPAGVASSRVISFRKTY------LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLI 133

Query: 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499
            W +      P+   T                                      DGN   
Sbjct: 134 TWKKRLSGADPNADVTDF----------------------------DRRITAGPDGN--- 162

Query: 500 LLISKITRDQIGDV---TCRAENVAGSVTCT-ATLSLLPESEVTD-VMESPRFIKTPETA 554
           L  + +T++ + D+    C A+N A           +   ++        P      +  
Sbjct: 163 LYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDM 222

Query: 555 KVMDGQSVLFTAQVG 569
               G   +     G
Sbjct: 223 MAKAGDVTMIYCMYG 237

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  235 bits (602), Expect = 4e-72
 Identities = 83/408 (20%), Positives = 152/408 (37%), Gaps = 33/408 (8%)

Query: 6   APRFIEK-IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
            P   ++  +  +       L  C+ +G+P P+  W ++    +  +   ++      TL
Sbjct: 16  PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75

Query: 65  EIINPT----KEDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTK-PLKPVIAE 118
            I   +    +E  G Y C A N  G A      L V       ++P + K  L PV+ +
Sbjct: 76  VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV------SKSPLWPKENLDPVVVQ 129

Query: 119 AQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD-EA 176
             +P TL+     G P+P I W     E +  +    + +   G   L  S    QD + 
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGH--NG--DLYFSNVMLQDMQT 185

Query: 177 VYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP---LQALLVPKDSTVTLEA 233
            YS  A   F     + N    K  T  +      P+ + P     + +V +   + LE 
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLT-TRGVAERTPSFMYPQGTASSQMVLRGMDLLLEC 244

Query: 234 EYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293
             +G PTP++ W+K G ++ S   + ++    L I   +++ +G+Y     N+ G  R +
Sbjct: 245 IASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT 304

Query: 294 GSVTITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGK 352
            SV +  A        ++ +                    G P P V W  +G P++   
Sbjct: 305 ISVRVKAAPYWLDEPKNLILAPGEDGRL-------VCRANGNPKPTVQWMVNGEPLQSAP 357

Query: 353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
                +       +   +    +  +Y C   N  G  +A A ++V +
Sbjct: 358 PNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  192 bits (488), Expect = 1e-55
 Identities = 78/448 (17%), Positives = 134/448 (29%), Gaps = 82/448 (18%)

Query: 104 EAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
           + P  TK   K  I + +    ++    G P PS  W R            +     +G 
Sbjct: 15  QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74

Query: 163 CVLS--ISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV-RPLQ 219
            V+         + E  Y   A N FG A      +          +V ++P      L 
Sbjct: 75  LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRL----------QVSKSPLWPKENLD 124

Query: 220 ALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKD--IETKDNVTKLVIKQTTKK-T 275
            ++V + + +TL+     G P+P + W  +  E +++D  +    N   L       +  
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD-LYFSNVMLQDM 183

Query: 276 TGKYEIRVVNEAG-EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV---- 330
              Y            +     T+ V     V      E  P+  +     S  +V    
Sbjct: 184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV-----AERTPSFMYPQGTASSQMVLRGM 238

Query: 331 -------VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
                   +G PTP + W   G  +   K    +++ +    L I+ V  E++G Y C A
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPSDK--AKFENFNKA--LRITNVSEEDSGEYFCLA 294

Query: 384 VNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR 443
            N +G      ++ V+       AP +    K +I        L     G P P++ W  
Sbjct: 295 SNKMGSIRHTISVRVK------AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV 348

Query: 444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503
             E +     +            +   +      AVY                       
Sbjct: 349 NGEPLQSAPPNPNR---EVAGDTIIFRDTQISSRAVY----------------------- 382

Query: 504 KITRDQIGDVTCRAENVAGSVTCTATLS 531
                      C   N  G +   A +S
Sbjct: 383 ----------QCNTSNEHGYLLANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  159 bits (403), Expect = 1e-43
 Identities = 70/382 (18%), Positives = 123/382 (32%), Gaps = 79/382 (20%)

Query: 208 VLEAPTIVR-PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNV 263
           + + PTI +   +  +V     + +E E  G P P   W +N +         +  +   
Sbjct: 13  LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72

Query: 264 TKLVIKQTTKKT----TGKYEIRVVNEAGEARTSGSVTITVAEAET----VMMDVRVESH 315
             LVI   +        G+Y+    N+ G A  S  + + V+++       +  V V+  
Sbjct: 73  GTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL-SNRIRLQVSKSPLWPKENLDPVVVQEG 131

Query: 316 PTASFQWFIHSEPVVVTGKPTPLVTWSHDG-TPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
              +       +     G P+P++ W      P+ + K V+   + D    L  S V  +
Sbjct: 132 APLTL------QCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD----LYFSNVMLQ 181

Query: 375 NA-GLYSCTAVNPVGEAV---AAATLAVEEKEESGE-APKFTKP---LKPVIAEAQSPAT 426
           +    YSC A       +      TL V       E  P F  P       +        
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL 241

Query: 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
           L+   +G PTP I WY+   ++  D      FN       L I+  + +D   Y      
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA-----LRITNVSEEDSGEY------ 290

Query: 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPR 546
                                       C A N  GS+  T ++          V  +P 
Sbjct: 291 ---------------------------FCLASNKMGSIRHTISVR---------VKAAPY 314

Query: 547 FIKTPETAKVMDGQSVLFTAQV 568
           ++  P+   +  G+      + 
Sbjct: 315 WLDEPKNLILAPGEDGRLVCRA 336

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 91.1 bits (226), Expect = 7e-20
 Identities = 48/291 (16%), Positives = 79/291 (27%), Gaps = 67/291 (23%)

Query: 295 SVTITVAEA----ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE 350
           S+   + +     +    D  V+                   G P P   W+ +      
Sbjct: 8   SIQNELTQPPTITKQSAKDHIVDPRDNILI-------ECEAKGNPAPSFHWTRNSRFFNI 60

Query: 351 GKEVTIYQDTDGLCKLAISEVFP----ENAGLYSCTAVNPVGEAV-AAATLAVEEKEESG 405
            K+  +         L I         E  G Y C A N  G A+     L V       
Sbjct: 61  AKDPRVSMRRRS-GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV------S 113

Query: 406 EAPKFTK-PLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           ++P + K  L PV+ +  +P TL+     G P+P I W     E +  +           
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRV-------- 165

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR-DQIGDVTCRAENVAG 522
                                         +G+   L  S +   D   D +C A     
Sbjct: 166 --------------------------SQGHNGD---LYFSNVMLQDMQTDYSCNARFHFT 196

Query: 523 SVTCT-ATLSLLPESEVTDVMESPRFI---KTPETAKVMDGQSVLFTAQVG 569
                    +L   +       +P F+    T  +  V+ G  +L      
Sbjct: 197 HTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS 247

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  239 bits (610), Expect = 8e-71
 Identities = 87/573 (15%), Positives = 141/573 (24%), Gaps = 104/573 (18%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
             L    I          +    FTC+ E     T  W  +   L  +    +       
Sbjct: 108 PELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQL--SNGNR 164

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
           TL + N T+ D   Y C+  N        S  L VL           T         +  
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY-----GPDAPTISPLNTSYRSGE 219

Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
              L       P     W+                        L I   T  +   Y+ +
Sbjct: 220 NLNLSCHAASNPPAQYSWFVN-GTFQQSTQE------------LFIPNITVNNSGSYTCQ 266

Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
           A N+           +       KP +    +         V  +  V L  E     T 
Sbjct: 267 AHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNP-------VEDEDAVALTCEPEIQNTT 319

Query: 242 EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
            + W  N    VS  ++  ++   L +   T+   G YE  + NE      S  V + V 
Sbjct: 320 YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDH-SDPVILNVL 378

Query: 302 EAETVMM----DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
                                S               P    +W  DG   +  +E    
Sbjct: 379 YGPDDPTISPSYTYYRPGVNLSLS-------CHAASNPPAQYSWLIDGNIQQHTQE---- 427

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPV 417
                   L IS +  +N+GLY+C A N            +    E              
Sbjct: 428 --------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL--PKPSISSNNSK 477

Query: 418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 477
             E +           + T    W+   + +       +    + G   L++   T  D 
Sbjct: 478 PVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQL----SNGNRTLTLFNVTRNDA 532

Query: 478 AVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLLPES 536
             Y                                  C  +N   +  +   TL      
Sbjct: 533 RAY---------------------------------VCGIQNSVSANRSDPVTL------ 553

Query: 537 EVTDVMESP-RFIKTPETAKVMDGQSVLFTAQV 568
              DV+  P   I +P  +  + G ++  +   
Sbjct: 554 ---DVLYGPDTPIISPPDSSYLSGANLNLSCHS 583

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  225 bits (574), Expect = 1e-65
 Identities = 84/580 (14%), Positives = 139/580 (23%), Gaps = 114/580 (19%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL--HATEHYLITT-------------- 57
            P    + +  L         L   +W K            Y+I T              
Sbjct: 7   TPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66

Query: 58  VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIA 117
           +   ++L I N  + D G YT        V   +     +  E                 
Sbjct: 67  IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELP---KPSISSNNSKPV 123

Query: 118 EAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
           E +           +   +  W+   + +       +    + G   L++   T  D A 
Sbjct: 124 EDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQL----SNGNRTLTLFNVTRNDTAS 178

Query: 178 YSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG 237
           Y  +  N         +++L      D P +    T  R            + L      
Sbjct: 179 YKCETQNPVSARRSD-SVILNVLYGPDAPTISPLNTSYRS--------GENLNLSCHAAS 229

Query: 238 TPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
            P  +  WF NG            +  +L I   T   +G Y  +  N       +   T
Sbjct: 230 NPPAQYSWFVNGTFQ--------QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTT 281

Query: 298 ITVAEAE-----TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGK 352
           ITV         T      VE     +              + T    W  +   +    
Sbjct: 282 ITVYAEPPKPFITSNNSNPVEDEDAVALT-------CEPEIQNTT-YLWWVNNQSLPVSP 333

Query: 353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFT 411
            + +  D      L +  V   + G Y C   N +         L V            T
Sbjct: 334 RLQLSNDN---RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP-----DDPT 385

Query: 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
                         +L       P     W      I                  L IS 
Sbjct: 386 ISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID-GNIQQHTQE------------LFISN 432

Query: 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
            T ++  +Y                                 TC+A N A   + T   +
Sbjct: 433 ITEKNSGLY---------------------------------TCQANNSASGHSRTTVKT 459

Query: 532 LLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYS 571
           +   +E+         I +  +  V D  +V FT +    
Sbjct: 460 ITVSAELP-----KPSISSNNSKPVEDKDAVAFTCEPEAQ 494

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  222 bits (568), Expect = 8e-65
 Identities = 77/536 (14%), Positives = 127/536 (23%), Gaps = 105/536 (19%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
                             +    +C    +P    +W  +GT   +T             
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST-----------QE 249

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
           L I N T  + G YTC+A N       +    +    E      F         E +   
Sbjct: 250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE--PPKPFITSNNSNPVEDEDAV 307

Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
            L      + T    W+   + +       +  +       L++   T  D   Y     
Sbjct: 308 ALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSND----NRTLTLLSVTRNDVGPYECGIQ 362

Query: 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVR-PLQALLVPKDSTVTLEAEYTGTPTPE 242
           N          ++           VL  P                 ++L       P  +
Sbjct: 363 NELSVDHSDPVIL----------NVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQ 412

Query: 243 VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
             W  +G               +L I   T+K +G Y  +  N A     +   TITV+ 
Sbjct: 413 YSWLIDGNIQQHTQ--------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA 464

Query: 303 AETVMM-----DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
                         VE     +F             + T    W  +G  +     + + 
Sbjct: 465 ELPKPSISSNNSKPVEDKDAVAFT-------CEPEAQNTT-YLWWVNGQSLPVSPRLQLS 516

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTKPLKP 416
                   L +  V   +A  Y C   N V    +   TL V                  
Sbjct: 517 NGN---RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYG-----PDTPIISPPD 568

Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
               + +   L       P+P   W          NG   +         L I++ TP +
Sbjct: 569 SSYLSGANLNLSCHSASNPSPQYSWRI--------NGIPQQHTQV-----LFIAKITPNN 615

Query: 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
              Y                                  C   N+A     +   S+
Sbjct: 616 NGTY---------------------------------ACFVSNLATGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  168 bits (426), Expect = 5e-45
 Identities = 62/482 (12%), Positives = 111/482 (23%), Gaps = 97/482 (20%)

Query: 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL--------PDNGHTMEFNP 158
           K T    P          L      +      WY+G+                       
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 159 TTG------ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAP 212
            +G         L I      D   Y++  + +    E        +AT   +       
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNE--------EATGQFRVYPELPK 112

Query: 213 TIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTKLVIKQT 271
             +    +  V     V    E          W+ N + + VS  ++  +    L +   
Sbjct: 113 PSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNV 171

Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM----DVRVESHPTASFQWFIHSE 327
           T+  T  Y+    N     R S SV + V            +    S    +        
Sbjct: 172 TRNDTASYKCETQNPVSARR-SDSVILNVLYGPDAPTISPLNTSYRSGENLNL------- 223

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
                  P    +W  +GT  +  +E            L I  +   N+G Y+C A N  
Sbjct: 224 SCHAASNPPAQYSWFVNGTFQQSTQE------------LFIPNITVNNSGSYTCQAHNSD 271

Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 447
                     +    E      F         E +    L      + T    W+   + 
Sbjct: 272 TGLNRTTVTTITVYAE--PPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQS 328

Query: 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
           +       +  +       L++   T  D   Y                           
Sbjct: 329 LPVSPRLQLSND----NRTLTLLSVTRNDVGPY--------------------------- 357

Query: 508 DQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK-TPETAKVMDGQSVLFTA 566
                  C  +N          +         +V+  P     +P       G ++  + 
Sbjct: 358 ------ECGIQNELSVDHSDPVI--------LNVLYGPDDPTISPSYTYYRPGVNLSLSC 403

Query: 567 QV 568
             
Sbjct: 404 HA 405

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  156 bits (396), Expect = 5e-41
 Identities = 46/296 (15%), Positives = 78/296 (26%), Gaps = 37/296 (12%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
                               +C    +P    +W  DG              +    L I
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN-----------IQQHTQELFI 430

Query: 67  INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLK 126
            N T+++ G+YTC+A N     + +    +    E                E +      
Sbjct: 431 SNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL--PKPSISSNNSKPVEDKDAVAFT 488

Query: 127 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF 186
                + T    W+   + +       +    + G   L++   T  D   Y     N+ 
Sbjct: 489 CEPEAQNTT-YLWWVNGQSLPVSPRLQL----SNGNRTLTLFNVTRNDARAYVCGIQNSV 543

Query: 187 GRAECRANLVLRKATTIDKPRVLEAPT-IVRPLQALLVPKDSTVTLEAEYTGTPTPEVKW 245
                    +           VL  P   +           + + L       P+P+  W
Sbjct: 544 SANRSDPVTL----------DVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSW 593

Query: 246 FKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
             NG            +   L I + T    G Y   V N A     S   +ITV+
Sbjct: 594 RINGIPQ--------QHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  230 bits (589), Expect = 2e-70
 Identities = 88/404 (21%), Positives = 148/404 (36%), Gaps = 32/404 (7%)

Query: 6   APRFIEKIQPVV---SHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
            P F+++   V+     +E+    +C+V+G+P P + W+ +GT++     +  + V+   
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-- 62

Query: 63  TLEIINPTK-EDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKF-TKPLKPVIAEA 119
           +L I NP K +D G Y C ATN  G + +  A L             F T+    V    
Sbjct: 63  SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF------AYLENFKTRTRSTVSVRR 116

Query: 120 QSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 178
                L           S  W   +     DN   +     TG   L I++    D   Y
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQE--TG--NLYIAKVEKSDVGNY 172

Query: 179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238
           +    NT    +                   E    V+  + +   K +TV LE    G 
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN 232

Query: 239 PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           P P + W +   + +++      +   L I    ++  G YE    N  G+    G +T 
Sbjct: 233 PVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 292

Query: 299 TVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
                   ++ D+ V    +  +            G+P P   W  +G P+     + I 
Sbjct: 293 YAQPNWVQIINDIHVAMEESVFW-------ECKANGRPKPTYRWLKNGDPLLTRDRIQIE 345

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
           Q T     L I+ V   +AG+Y C A N  G   ++A L+V  +
Sbjct: 346 QGT-----LNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  181 bits (460), Expect = 1e-51
 Identities = 83/453 (18%), Positives = 128/453 (28%), Gaps = 91/453 (20%)

Query: 103 GEAPKFTKPLKPVIAEAQS---PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
           G  P F +    V+    S      L   V G P P I W     ++             
Sbjct: 3   GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPL 218
           +   +L  +    QD   Y   A N+FG        V R+A      +         R  
Sbjct: 63  S---LLINNPNKTQDAGTYQCIATNSFGTI------VSREAKL----QFAYLENFKTRTR 109

Query: 219 QALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKD--IETKDNVTKLVIKQTTKKT 275
             + V +   + L       +      W  N       +    +++    L I +  K  
Sbjct: 110 STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET-GNLYIAKVEKSD 168

Query: 276 TGKYEIRVVNEAGEARTSGSVTITVAEAETVMM------------DVRVESHPTASFQWF 323
            G Y   V N     +  G  T  +   + VM              V  E   T      
Sbjct: 169 VGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL--- 225

Query: 324 IHSEPVVVTGKPTPLVTWSH-DGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCT 382
                    G P P + W   DG P+                 L I     E+AG Y C 
Sbjct: 226 ----ECFALGNPVPTILWRRADGKPIARKARRHKSNGI-----LEIPNFQQEDAGSYECV 276

Query: 383 AVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY 442
           A N  G+ VA   L           P + + +  +    +     +    GRP P+  W 
Sbjct: 277 AENSRGKNVAKGQLTFYA------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL 330

Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
           +  + +L  +   +E         L+I+     D  +Y                      
Sbjct: 331 KNGDPLLTRDRIQIEQG------TLNITIVNLSDAGMY---------------------- 362

Query: 503 SKITRDQIGDVTCRAENVAGSVTCTATLSLLPE 535
                       C AEN  G +  +A LS++ E
Sbjct: 363 -----------QCVAENKHGVIFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  177 bits (451), Expect = 2e-50
 Identities = 58/304 (19%), Positives = 96/304 (31%), Gaps = 27/304 (8%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVES 60
              L          V   + Q  +  C         +  W  +    +          + 
Sbjct: 98  FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRF--VSQE 155

Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG-----EAPKFTKPLKPV 115
              L I    K D+G YTC  TN             L     G     E     +  + V
Sbjct: 156 TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215

Query: 116 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
            AE  +   L+    G P P+I W R   + +       + N       L I     +D 
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI-----LEIPNFQQEDA 270

Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY 235
             Y   A N+ G+   +  L                P  V+ +  + V  + +V  E + 
Sbjct: 271 GSYECVAENSRGKNVAKGQL-----------TFYAQPNWVQIINDIHVAMEESVFWECKA 319

Query: 236 TGTPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
            G P P  +W KNG  ++++D I+ +     L I        G Y+    N+ G   +S 
Sbjct: 320 NGRPKPTYRWLKNGDPLLTRDRIQIEQGT--LNITIVNLSDAGMYQCVAENKHGVIFSSA 377

Query: 295 SVTI 298
            +++
Sbjct: 378 ELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  158 bits (401), Expect = 2e-43
 Identities = 66/373 (17%), Positives = 100/373 (26%), Gaps = 71/373 (19%)

Query: 210 EAPTIVRPLQALLVPKDS---TVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTK 265
             P  V+    ++ P DS    V L  E  G P P ++W  NG ++ +  D         
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63

Query: 266 LVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTITVAEAETVMM----DVRVESHPTASF 320
           L+I    K    G Y+    N  G    S    +  A  E         V V        
Sbjct: 64  LLINNPNKTQDAGTYQCIATNSFGTIV-SREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122

Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
                               W  +  P  +           G   L I++V   + G Y+
Sbjct: 123 ------LCGPPPHSGELSYAWIFNEYPSYQDNRR-FVSQETG--NLYIAKVEKSDVGNYT 173

Query: 381 CTAVNPVGEA---VAAATLAVEEKEESGEA--PKFTKPLKPVIAEAQSPATLKATVTGRP 435
           C   N V           L +      GE       +  + V AE  +   L+    G P
Sbjct: 174 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP 233

Query: 436 TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495
            P+I W R   + +       + N       L I     +D   Y               
Sbjct: 234 VPTILWRRADGKPIARKARRHKSNGI-----LEIPNFQQEDAGSY--------------- 273

Query: 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAK 555
                              C AEN  G       L+             P +++      
Sbjct: 274 ------------------ECVAENSRGKNVAKGQLT---------FYAQPNWVQIINDIH 306

Query: 556 VMDGQSVLFTAQV 568
           V   +SV +  + 
Sbjct: 307 VAMEESVFWECKA 319

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  128 bits (322), Expect = 2e-32
 Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 17/196 (8%)

Query: 1   MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVE 59
           M E      ++  + V + +       C   G+P+PT+ W++ DG  +        +   
Sbjct: 200 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN-- 257

Query: 60  SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA 119
               LEI N  +ED G Y C A N  G       L           P + + +  +    
Sbjct: 258 --GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY------AQPNWVQIINDIHVAM 309

Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
           +     +    GRP P+  W +  + +L  +   +E         L+I+     D  +Y 
Sbjct: 310 EESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG------TLNITIVNLSDAGMYQ 363

Query: 180 VKAVNTFGRAECRANL 195
             A N  G     A L
Sbjct: 364 CVAENKHGVIFSSAEL 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  219 bits (559), Expect = 5e-66
 Identities = 94/404 (23%), Positives = 139/404 (34%), Gaps = 36/404 (8%)

Query: 6   APRFIEKIQPVV---SHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
            P F E+    +      E+    TC+   +P  T  W+ +GTEL          V    
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA--G 61

Query: 63  TLEIINPTK-EDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTK-PLKPVIAEA 119
            L I NP K +D G Y C ATN  G      A+L        G   +F+     PV    
Sbjct: 62  DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF------GFLQEFSAEERDPVKITE 115

Query: 120 QSPATLKATVT-GRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
                   +     P  S  W        +P +G       T     L I++    D   
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG---NLYIAKTEASDLGN 172

Query: 178 YSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLVPKDSTVTLEAEYT 236
           YS  A +              + +   +     AP+I  +            VTLE    
Sbjct: 173 YSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF 232

Query: 237 GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296
           G P P++KW K      SK   + + +  L I+    +  G YE    N  G     G +
Sbjct: 233 GNPVPQIKWRKLDGSQTSK-WLSSEPL--LHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289

Query: 297 TITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
            I    +   V+ D   +      +         V +GKP P V W  DG P+     + 
Sbjct: 290 IIHAQPDWLDVITDTEADIGSDLRW-------SCVASGKPRPAVRWLRDGQPLASQNRIE 342

Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
           +         L  S++  E++G+Y C A N  G   A+A L V+
Sbjct: 343 VSGGE-----LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  173 bits (441), Expect = 5e-49
 Identities = 59/303 (19%), Positives = 102/303 (33%), Gaps = 29/303 (9%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
            L     E+  PV   +    +FTC     +P  +  W  +               ++  
Sbjct: 99  FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 158

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCS-----ANLIVLEKEESGEAPKF-TKPLKPVI 116
            L I      D+G Y+C AT+     T S     + L +  ++    AP    K      
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218

Query: 117 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 176
           A      TL+    G P P I W +           +      + E +L I     +DE 
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRK--------LDGSQTSKWLSSEPLLHIQNVDFEDEG 270

Query: 177 VYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT 236
            Y  +A N  GR   +  +            +   P  +  +        S +      +
Sbjct: 271 TYECEAENIKGRDTYQGRI-----------IIHAQPDWLDVITDTEADIGSDLRWSCVAS 319

Query: 237 GTPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295
           G P P V+W ++G+ + S++ IE       L   +   + +G Y+    N+ G    S  
Sbjct: 320 GKPRPAVRWLRDGQPLASQNRIEVSGGE--LRFSKLVLEDSGMYQCVAENKHGTVYASAE 377

Query: 296 VTI 298
           +T+
Sbjct: 378 LTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  171 bits (435), Expect = 3e-48
 Identities = 65/441 (14%), Positives = 110/441 (24%), Gaps = 79/441 (17%)

Query: 105 APKFTKPLKPVIAEAQS---PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
            P F +     +    S     TL       P  +  W     E+               
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD- 62

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQA 220
             ++  +    +D   Y   A N  G    R   +          R              
Sbjct: 63  --LVISNPVKAKDAGSYQCVATNARGTVVSREASL----------RFGFLQEFSAEERDP 110

Query: 221 LLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIV---SKDIETKDNVTKLVIKQTTKKTT 276
           + + +   V          P    +W  N                    L I +T     
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDL 170

Query: 277 GKYEIRVVNEAGEARTS--GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPV----V 330
           G Y     +       S     +     AE              +  + +  + V     
Sbjct: 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECF 230

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
             G P P + W         G + + +  ++ L  L I  V  E+ G Y C A N  G  
Sbjct: 231 AFGNPVPQIKWRKLD-----GSQTSKWLSSEPL--LHIQNVDFEDEGTYECEAENIKGRD 283

Query: 391 VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP 450
                + +         P +   +    A+  S        +G+P P++ W R  + +  
Sbjct: 284 TYQGRIIIH------AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS 337

Query: 451 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQI 510
            N   +          L  S+   +D  +Y                              
Sbjct: 338 QNRIEVSGG------ELRFSKLVLEDSGMY------------------------------ 361

Query: 511 GDVTCRAENVAGSVTCTATLS 531
               C AEN  G+V  +A L+
Sbjct: 362 ---QCVAENKHGTVYASAELT 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  146 bits (370), Expect = 4e-39
 Identities = 58/374 (15%), Positives = 97/374 (25%), Gaps = 75/374 (20%)

Query: 211 APTIVRPLQALLVPKDS---TVTLEAEYTGTPTPEVKWFKNGKEI--VSKDIETKDNVTK 265
            P         L P+ S    VTL       P    +W  NG E+               
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM----DVRVESHPTASFQ 321
           ++      K  G Y+    N  G    S   ++     +         V++       F 
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVV-SREASLRFGFLQEFSAEERDPVKITEGWGVMF- 121

Query: 322 WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY-QDTDGLCKLAISEVFPENAGLYS 380
                        P     W  +  P     +   +   T G   L I++    + G YS
Sbjct: 122 -----TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYS 174

Query: 381 CTAVNPVGEA-----VAAATLAVEEKEESGEAPKF-TKPLKPVIAEAQSPATLKATVTGR 434
           C A + +           + L++  ++    AP    K      A      TL+    G 
Sbjct: 175 CFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGN 234

Query: 435 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494
           P P I W +           +      + E +L I     +DE  Y              
Sbjct: 235 PVPQIKWRK--------LDGSQTSKWLSSEPLLHIQNVDFEDEGTY-------------- 272

Query: 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETA 554
                               C AEN+ G  T    +          +   P ++      
Sbjct: 273 -------------------ECEAENIKGRDTYQGRII---------IHAQPDWLDVITDT 304

Query: 555 KVMDGQSVLFTAQV 568
           +   G  + ++   
Sbjct: 305 EADIGSDLRWSCVA 318

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  128 bits (324), Expect = 9e-33
 Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 18/193 (9%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
           +       +      +   Q     C   G+P+P + W+K               + S  
Sbjct: 204 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ------TSKWLSSEP 257

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
            L I N   ED G Y C+A NI G  T    +I+         P +   +    A+  S 
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH------AQPDWLDVITDTEADIGSD 311

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
                  +G+P P++ W R  + +   N   +          L  S+   +D  +Y   A
Sbjct: 312 LRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG------ELRFSKLVLEDSGMYQCVA 365

Query: 183 VNTFGRAECRANL 195
            N  G     A L
Sbjct: 366 ENKHGTVYASAEL 378

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  214 bits (547), Expect = 3e-65
 Identities = 59/322 (18%), Positives = 106/322 (32%), Gaps = 36/322 (11%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
            P F+E +   V+  E   L  CKV        + W KD  E+   E +     + + TL
Sbjct: 7   GPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTL 63

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
            I   +K+D G+Y     +  G       L+           +    +   IA + +   
Sbjct: 64  LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF------KELMMEVCKKIALSATDLK 117

Query: 125 LKATVTGR----------PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
           +++T  G               + W      I   +           +  L I+E TP D
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG--EQIWLQINEPTPND 175

Query: 175 EAVYSVKAVNTFGRAECRANLV----------LRKATTIDKPRVLEAPTIVRPLQALLVP 224
           +  Y ++  +     +   +L            ++           A  +      + + 
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ 235

Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGKYE 280
           +   + L     G P PEV W KN K + S D               I   +   +GKY 
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295

Query: 281 IRVVNEAGEARTSGSVTITVAE 302
           + V N+ G   +  +V++ + E
Sbjct: 296 LVVKNKYGSETSDFTVSVFIPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  200 bits (511), Expect = 6e-60
 Identities = 56/332 (16%), Positives = 104/332 (31%), Gaps = 45/332 (13%)

Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNP 158
            +    P F + L   +        LK  V   +    I WY+ + EI  D  H  +   
Sbjct: 2   IDPFTGPHFVEYLSWEVTGEC-NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--- 57

Query: 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL 218
             G C L I+E + +D  +Y V   +  G+ + R  LV                 ++  +
Sbjct: 58  -DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV-----------DEAFKELMMEV 105

Query: 219 QALLVPKDSTVTLEAEYTG----------TPTPEVKWFKNGKEIVSKD---IETKDNVTK 265
              +    + + +++   G              +V W  NG  I   D            
Sbjct: 106 CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 165

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV-AEAETVMMDVRVESHPTASFQWFI 324
           L I + T    GKY + + +     + +  ++     EA      ++  +    +    +
Sbjct: 166 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 225

Query: 325 HSEP--------------VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISE 370
              P                V G P P V+W  +   +       +  +        I+ 
Sbjct: 226 GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTING 285

Query: 371 VFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
           V   ++G Y     N  G   +  T++V   E
Sbjct: 286 VSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  200 bits (511), Expect = 8e-60
 Identities = 58/350 (16%), Positives = 108/350 (30%), Gaps = 58/350 (16%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIVSKD-IETKDNVTK 265
               P  V  L    V  +  V L+ +         + W+K+ +EI   +  + KD +  
Sbjct: 4   PFTGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT 62

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM-DVRVESHPTASFQWFI 324
           L+I + +KK  G YE+ + ++ G+ ++   +     +   + +      S      Q   
Sbjct: 63  LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122

Query: 325 HSEPV---VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
               +   V        V WSH+G+ ++    V           L I+E  P + G Y  
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT-GEQIWLQINEPTPNDKGKYVM 181

Query: 382 TAVNPVGEAVAAATLAVEEKE---------------ESGEAPKFTKPLKPVIAEAQSPAT 426
              +          L+ +  +               E   A         V  +      
Sbjct: 182 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 241

Query: 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
           L   V G P P + W + ++ +  D+   ++F         +I+  +  D   Y      
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFE-AGRTAYFTINGVSTADSGKY------ 294

Query: 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS-LLPE 535
                                          +N  GS T   T+S  +PE
Sbjct: 295 ---------------------------GLVVKNKYGSETSDFTVSVFIPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  126 bits (317), Expect = 2e-32
 Identities = 38/292 (13%), Positives = 78/292 (26%), Gaps = 84/292 (28%)

Query: 299 TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ 358
            V     V++  +V +                        + W  D   +   ++     
Sbjct: 17  EVTGECNVLLKCKVANIK------------------KETHIVWYKDEREISVDEKHDF-- 56

Query: 359 DTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVI 418
             DG+C L I+E   ++AG+Y     +  G+  +   L  E         +    +   I
Sbjct: 57  -KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF------KELMMEVCKKI 109

Query: 419 AEAQSPATLKATVTGR----------PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 468
           A + +   +++T  G               + W      I   +           +  L 
Sbjct: 110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG--EQIWLQ 167

Query: 469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTA 528
           I+E TP D+  Y                                      +       T 
Sbjct: 168 INEPTPNDKGKY---------------------------------VMELFDGKTGHQKTV 194

Query: 529 TLS------------LLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
            LS             L ++ + +   +      P+   + +G+++  T  V
Sbjct: 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 40/177 (22%)

Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNP 460
            +    P F + L   +        LK  V   +    I WY+ + EI  D  H  +   
Sbjct: 2   IDPFTGPHFVEYLSWEVTGEC-NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--- 57

Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
             G C L I+E + +D  +Y                                     ++ 
Sbjct: 58  -DGICTLLITEFSKKDAGIY---------------------------------EVILKDD 83

Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIK-TPETAKVMDGQSVLFTAQVGYSERLEI 576
            G       L      E+   +     +  T    +       L++    Y E L++
Sbjct: 84  RGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKV 140

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  219 bits (560), Expect = 1e-64
 Identities = 69/567 (12%), Positives = 133/567 (23%), Gaps = 105/567 (18%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
              +   + +   V             V+     +  W    + L+   H+ +     V 
Sbjct: 45  RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN-RGVV 103

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
           ++ I+  T+   G Y     +     T    + +           +T   +P   + ++ 
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT------LLYTLR-RPYFRKMENQ 156

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
             L       P P + W     +             +                      A
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQGESCK------EESPAVVKKEEKVLHELFGTDIRCCA 210

Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP 241
            N  GR   R   +           + + P     L  L +     + +  +        
Sbjct: 211 RNELGRECTRLFTI----------DLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGF 258

Query: 242 EVKWFKNGKEIVSKDI---------ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
            + W    K +   +           T   +    +    +  TG Y         +   
Sbjct: 259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ--- 315

Query: 293 SGSVTITVAEAETVMM-----DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
             S  +T+ E   +       D  ++ +    F        V     P    TW+     
Sbjct: 316 --SALVTIVEKGFINATNSSEDYEIDQYEEFCFS-------VRFKAYPQIRCTWTFSRKS 366

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEA 407
               +     +  D    ++         G Y   A N   +     TL +         
Sbjct: 367 FPCEQ-----KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR------- 414

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
                  KP +    S +       G P PS  W +  ++         E          
Sbjct: 415 -------KPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNR----- 462

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
                    +      +SST              ++     +   V C A N  G+   T
Sbjct: 463 -----KANRKVFGQWVSSST--------------LNMSEAIKGFLVKCCAYNSLGTSCET 503

Query: 528 ATLSLLPESEVTDVMESPRFIKTPETA 554
             L         +      FI+   T 
Sbjct: 504 ILL---------NSPGPFPFIQDGGTK 521

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  189 bits (480), Expect = 2e-53
 Identities = 61/501 (12%), Positives = 116/501 (23%), Gaps = 94/501 (18%)

Query: 72  EDIGVYTC----KATNIGGVATCSANLIVLEKEE------SGEAPKFTKPLKPVIAEAQS 121
           +D+ V  C       N   V   S+  +V E  E        ++         V  +  +
Sbjct: 5   QDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSA 64

Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
             TL+  V      S  W      +       ++     G   + I + T      Y + 
Sbjct: 65  SITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR---GVVSMVILKMTETQAGEYLLF 121

Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
             +          +            +                ++    L       P P
Sbjct: 122 IQSEATNYTILFTVS-----------IRNTLLYTLRRPYFRKMENQD-ALVCISESVPEP 169

Query: 242 EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
            V+W     +  S   E    V K   K   +           NE G   T    TI + 
Sbjct: 170 IVEWVLCDSQGESCK-EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR-LFTIDLN 227

Query: 302 EAETVMM-DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
           +     +  + ++                 V       +TW  +   ++EG    +   +
Sbjct: 228 QTPQTTLPQLFLKVGEPLWI------RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281

Query: 361 DGL-----CKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK 415
                       +S V   + G Y+C++     +   +A + + EK         T   +
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGF----INATNSSE 334

Query: 416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 475
               +              P     W   ++          E         +S       
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF------PCEQKGLDNGYSISKFCNHKH 388

Query: 476 DEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPE 535
               Y                                    AEN     T   TL     
Sbjct: 389 QPGEY---------------------------------IFHAENDDAQFTKMFTL----- 410

Query: 536 SEVTDVMESPRFIKTPETAKV 556
               ++   P+ +     ++ 
Sbjct: 411 ----NIRRKPQVLAEASASQA 427

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  135 bits (342), Expect = 2e-34
 Identities = 49/415 (11%), Positives = 105/415 (25%), Gaps = 80/415 (19%)

Query: 169 EATPQDEAVYS----VKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRPLQALLV 223
           E   QD  V          N     +  +   V      +      ++   V    A+ V
Sbjct: 1   ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60

Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN--VTKLVIKQTTKKTTGKYEI 281
              +++TL+            W      +  +      N  V  +VI + T+   G+Y +
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120

Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
            + +EA       +V+I      T+      +     +          +    P P+V W
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALV-------CISESVPEPIVEW 173

Query: 342 SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA-AATLAVEE 400
               +  +     +  +++  + K     +         C A N +G       T+ +  
Sbjct: 174 VLCDSQGE-----SCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL-- 226

Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFN 459
                        L  +  +   P  ++           + W    + +   N   M   
Sbjct: 227 ------NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY 280

Query: 460 PTT----GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTC 515
            T           +S     D   Y                                 TC
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYY---------------------------------TC 307

Query: 516 RAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE--TAKVMDGQSVLFTAQV 568
            +         +A ++         ++E      T      ++   +   F+ + 
Sbjct: 308 SSSKHPSQ---SALVT---------IVEKGFINATNSSEDYEIDQYEEFCFSVRF 350

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  212 bits (542), Expect = 2e-64
 Identities = 53/311 (17%), Positives = 107/311 (34%), Gaps = 19/311 (6%)

Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
           + P   E +  V         F C     P    +W KD      +    + +  + + +
Sbjct: 2   IDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSAN-------LIVLEKEESGEAPKFTKPLKPVIA 117
              +   +D+G+Y+C  T+  G+A+           L+ L  E           L   I 
Sbjct: 61  TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120

Query: 118 EAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
           E                  + +   ++EI     + M  +  TG   + + +   +DE  
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180

Query: 178 YSVKAVNTFGRAECRANLVLRKATTIDK--------PRVLEAPTIVRPLQALLVPKDSTV 229
           Y+ +  +          LV      + K            + P  V  L    V  +  V
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNV 239

Query: 230 TLEAEYTGTPTP-EVKWFKNGKEIV-SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEA 287
            L+ +         + W+K+ +EI   +  + KD +  L+I + +KK  G YE+ + ++ 
Sbjct: 240 LLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 299

Query: 288 GEARTSGSVTI 298
           G+ ++   +  
Sbjct: 300 GKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  185 bits (471), Expect = 4e-54
 Identities = 43/317 (13%), Positives = 95/317 (29%), Gaps = 26/317 (8%)

Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
           G  P   + +  V  +       +      P     W +            +E      +
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESK--GNK 57

Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI--VRPLQA 220
             ++  +    D  +YS    +T G A             +      + PT+     L  
Sbjct: 58  TKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117

Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKT 275
            ++ K            +   +V +  N KEI         I+    + ++ +++   + 
Sbjct: 118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177

Query: 276 TGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT--- 332
            G Y  ++ +      ++  +   V +      + + +         F+      VT   
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 237

Query: 333 ----------GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCT 382
                      K    + W  D   +   ++   +   DG+C L I+E   ++AG+Y   
Sbjct: 238 NVLLKCKVANIKKETHIVWYKDEREISVDEK---HDFKDGICTLLITEFSKKDAGIYEVI 294

Query: 383 AVNPVGEAVAAATLAVE 399
             +  G+  +   L  E
Sbjct: 295 LKDDRGKDKSRLKLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  177 bits (451), Expect = 2e-51
 Identities = 55/350 (15%), Positives = 105/350 (30%), Gaps = 70/350 (20%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
             P     +  +      ++  E +   TP  E  W K+           +E+K N TK+
Sbjct: 2   IDPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
             K       G Y   V +  G A    S  I   E + ++        PT   +  +  
Sbjct: 61  TFKDLGMDDLGIYSCDVTDTDGIAS---SYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117

Query: 327 EPV----------VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTD-GLCKLAISEVFPEN 375
           E +                   V +  +   + EG +  ++ D + G+ ++ + ++  E+
Sbjct: 118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177

Query: 376 AGLYSCTAVNPVGEAVAAATLAVEEKEE-------------SGEAPKFTKPLKPVIAEAQ 422
            G Y+    +      +   L  +  ++               + P F + L   +    
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 237

Query: 423 SPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
           +   LK  V   +    I WY+ + EI  D  H  +     G C L I+E + +D  +Y 
Sbjct: 238 N-VLLKCKVANIKKETHIVWYKDEREISVDEKHDFK----DGICTLLITEFSKKDAGIY- 291

Query: 482 VKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                                               ++  G       L 
Sbjct: 292 --------------------------------EVILKDDRGKDKSRLKLV 309

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  126 bits (318), Expect = 1e-32
 Identities = 36/277 (12%), Positives = 77/277 (27%), Gaps = 60/277 (21%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
           +V  +   + +F+             P    +WS D    ++   + +        K+  
Sbjct: 12  NVDDDGVISLNFE--------CDKMTPKSEFSWSKDYVSTEDSPRLEVESK-GNKTKMTF 62

Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK-------EESGEAPKFTKPLKPVIAEA 421
            ++  ++ G+YSC   +  G A +      E K       E           L   I E 
Sbjct: 63  KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEK 122

Query: 422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 481
                            + +   ++EI     + M  +  TG   + + +   +DE  Y 
Sbjct: 123 GQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY- 181

Query: 482 VKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL----------S 531
                                           T + ++   +   T  L           
Sbjct: 182 --------------------------------TFQLQDGKATNHSTVVLVGDVFKKLQKE 209

Query: 532 LLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
              + +     + P F++   + +V    +VL   +V
Sbjct: 210 AEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLLKCKV 245

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 69.2 bits (169), Expect = 5e-13
 Identities = 15/167 (8%), Positives = 37/167 (22%), Gaps = 39/167 (23%)

Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
           G  P   + +  V  +       +      P     W +            +E      +
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESK--GNK 57

Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
             ++  +    D  +Y                                 +C   +  G  
Sbjct: 58  TKMTFKDLGMDDLGIY---------------------------------SCDVTDTDGIA 84

Query: 525 TCTATLSLLPESEVTDVMES---PRFIKTPETAKVMDGQSVLFTAQV 568
           +         +  +    E       +K+    ++++   V F  Q 
Sbjct: 85  SSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  206 bits (525), Expect = 5e-62
 Identities = 68/300 (22%), Positives = 114/300 (38%), Gaps = 17/300 (5%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVESVSTL 64
            PRFI++ +  +      A F C+  G P P +TW K G ++++     +     + + L
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65

Query: 65  EIIN-PTKEDIGVYTCKATNIGGVATCSANLIVLEKEES-GEAPKFTKPLKPVIAEAQSP 122
            I    T  D  VY C A N  G  T  A L VL +++     P      +  + E    
Sbjct: 66  RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
           AT+    +G P P I W++    + P   +       +G   L I  +   D+  Y   A
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETDQGKYECVA 183

Query: 183 VNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
            N+ G      ANL +R            AP       +  +     V +     G+P P
Sbjct: 184 TNSAGVRYSSPANLYVRVQN--------VAPRFSILPMSHEIMPGGNVNITCVAVGSPMP 235

Query: 242 EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
            VKW +  +++  +D      V + V++ T  K +  Y    ++  G       +T+   
Sbjct: 236 YVKWMQGAEDLTPEDDMP---VGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSL 292

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  183 bits (466), Expect = 2e-53
 Identities = 64/359 (17%), Positives = 103/359 (28%), Gaps = 75/359 (20%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET----KDNV 263
             E P  ++  +  +       +   + TG P P V W K GK++ S+  ET    +   
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62

Query: 264 TKLVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTITVAEAETVMM--------DVRVES 314
             L I+          YE    N  GE      +T+   +                 VE 
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122

Query: 315 HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
             TA+            +G P P +TW  D  P+         +       L I      
Sbjct: 123 TRTATML-------CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS-GALQIESSEET 174

Query: 375 NAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG 433
           + G Y C A N  G    + A L V  +     AP+F+               +     G
Sbjct: 175 DQGKYECVATNSAGVRYSSPANLYVRVQNV---APRFSILPMSHEIMPGGNVNITCVAVG 231

Query: 434 RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493
            P P + W +G E++ P++   +            +     +D A Y             
Sbjct: 232 SPMPYVKWMQGAEDLTPEDDMPVG--------RNVLELTDVKDSANY------------- 270

Query: 494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE 552
                               TC A +  G +   A ++         V   P+      
Sbjct: 271 --------------------TCVAMSSLGVIEAVAQIT---------VKSLPKAGTKHH 300

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  181 bits (460), Expect = 1e-52
 Identities = 77/325 (23%), Positives = 122/325 (37%), Gaps = 39/325 (12%)

Query: 101 ESGE-APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
           E+GE  P+F K  K  I  +   A+     TG P P + W +  +++      T+EF+ +
Sbjct: 1   ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60

Query: 160 TGECVLSISEA-TPQDEAVYSVKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRP 217
            G  VL I    TP+DE VY   A N+ G     A L VLR+            P I   
Sbjct: 61  AG-AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF-----PNIDMG 114

Query: 218 LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI---VSKDIETKDNVTKLVIKQTTKK 274
            Q  +V +  T T+    +G P PE+ WFK+   +    S     +     L I+ + + 
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEET 174

Query: 275 TTGKYEIRVVNEAGEARTSGSVTITVAEAET------VMMDVRVESHPTASFQWFIHSEP 328
             GKYE    N AG  R S    + V           + M   +      +         
Sbjct: 175 DQGKYECVATNSAGV-RYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNIT------- 226

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
            V  G P P V W      +    ++ + +         +     +++  Y+C A++ +G
Sbjct: 227 CVAVGSPMPYVKWMQGAEDLTPEDDMPVGR-------NVLELTDVKDSANYTCVAMSSLG 279

Query: 389 EAVAAATLAVEEKEESGEAPKFTKP 413
              A A + V+        PK    
Sbjct: 280 VIEAVAQITVKSL------PKAGTK 298

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  146 bits (371), Expect = 6e-40
 Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 12/202 (5%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            P      Q  V  + + A   C   G+P P +TW KD   +  +             L+
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ 167

Query: 66  IINPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
           I +  + D G Y C ATN  GV  +  ANL V  +     AP+F+               
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN---VAPRFSILPMSHEIMPGGNVN 224

Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
           +     G P P + W +G E++ P++   +            +     +D A Y+  A++
Sbjct: 225 ITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG--------RNVLELTDVKDSANYTCVAMS 276

Query: 185 TFGRAECRANLVLRKATTIDKP 206
           + G  E  A + ++        
Sbjct: 277 SLGVIEAVAQITVKSLPKAGTK 298

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  139 bits (352), Expect = 3e-37
 Identities = 60/263 (22%), Positives = 86/263 (32%), Gaps = 51/263 (19%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
           D    S   ASF           TG P P VTW+  G  +   +  TI  D      L I
Sbjct: 15  DQIGVSGGVASF-------VCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67

Query: 369 SEVF-PENAGLYSCTAVNPVGEAVAAATLAVEEKEES-GEAPKFTKPLKPVIAEAQSPAT 426
             +  P +  +Y C A N VGE    A L V  +++     P      +  + E    AT
Sbjct: 68  QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127

Query: 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
           +    +G P P I W++    + P   +       +G   L I  +   D+  Y      
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETDQGKY------ 179

Query: 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-VTCTATLSLLPESEVTDVMESP 545
                                       C A N AG   +  A L       V     +P
Sbjct: 180 ---------------------------ECVATNSAGVRYSSPANL------YVRVQNVAP 206

Query: 546 RFIKTPETAKVMDGQSVLFTAQV 568
           RF   P + ++M G +V  T   
Sbjct: 207 RFSILPMSHEIMPGGNVNITCVA 229

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 81.4 bits (201), Expect = 3e-17
 Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 38/168 (22%)

Query: 403 ESGE-APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
           E+GE  P+F K  K  I  +   A+     TG P P + W +  +++      T+EF+ +
Sbjct: 1   ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60

Query: 462 TGECVLSISEA-TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
            G  VL I    TP+DE VY                                  C A+N 
Sbjct: 61  AG-AVLRIQPLRTPRDENVY---------------------------------ECVAQNS 86

Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
            G +T  A L++L E ++      P     P+   V   ++       
Sbjct: 87  VGEITVHAKLTVLREDQLPSGF--PNIDMGPQLKVVERTRTATMLCAA 132

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  209 bits (534), Expect = 5e-62
 Identities = 59/494 (11%), Positives = 115/494 (23%), Gaps = 92/494 (18%)

Query: 71  KEDIGVYTC----KATNIGGVATCSANLIVLEKEE------SGEAPKFTKPLKPVIAEAQ 120
            +D+ V  C       N   V   S+  +V E  E        ++         V  +  
Sbjct: 4   NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVS 63

Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
           +  TL+  V      S  W      +       ++         + I + T      Y +
Sbjct: 64  ASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV---SMVILKMTETQAGEYLL 120

Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT 240
              +          +            +                ++    L       P 
Sbjct: 121 FIQSEATNYTILFTVS-----------IRNTLLYTLRRPYFRKMENQD-ALVCISESVPE 168

Query: 241 PEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           P V+W     +  S   E    V K   K   +           NE G   T        
Sbjct: 169 PIVEWVLCDSQGESCK-EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLN 227

Query: 301 AEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
              +T +  + ++                 V       +TW  +   ++EG    +   +
Sbjct: 228 QTPQTTLPQLFLKVGEPLWI------RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281

Query: 361 DG-----LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK 415
                  +    +S V   + G Y+C++     ++   A + + EK         T   +
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGF----INATNSSE 334

Query: 416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 475
               +              P     W   ++   P     ++                  
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS-FPCEQKGLD------------------ 375

Query: 476 DEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPE 535
                               N   +      + Q G+    AEN     T   TL+    
Sbjct: 376 --------------------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN---- 411

Query: 536 SEVTDVMESPRFIK 549
                +    +   
Sbjct: 412 -----IRSGTKHHH 420

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  194 bits (495), Expect = 2e-56
 Identities = 48/414 (11%), Positives = 96/414 (23%), Gaps = 58/414 (14%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
              +   + +   V             V+     +  W    + L+   H+ +     V 
Sbjct: 45  RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN-RGVV 103

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
           ++ I+  T+   G Y     +     T    + +                +P   + ++ 
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSI-------RNTLLYTLRRPYFRKMENQ 156

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
             L       P P + W     +       +             + E    D       A
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE---KVLHELFGTD---IRCCA 210

Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE-YTGTPTP 241
            N  GR   R               +    T    L  L +     + +  +        
Sbjct: 211 RNELGRECTRLFT------------IDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGF 258

Query: 242 EVKWFKNGKEI---------VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
            + W    K +               T   +    +    +  TG Y         +   
Sbjct: 259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ--- 315

Query: 293 SGSVTITVAEAETVMM-----DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
             S  +T+ E   +       D  ++ +    F        V     P    TW+     
Sbjct: 316 --SALVTIVEKGFINATNSSEDYEIDQYEEFCFS-------VRFKAYPQIRCTWTFSRKS 366

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
               ++       D    ++         G Y   A N   +     TL +   
Sbjct: 367 FPCEQKG-----LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  145 bits (367), Expect = 2e-38
 Identities = 52/414 (12%), Positives = 106/414 (25%), Gaps = 78/414 (18%)

Query: 169 EATPQDEAVYS----VKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRPLQALLV 223
           E   QD  V          N     +  +   V      +      ++   V    A+ V
Sbjct: 1   ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60

Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE--TKDNVTKLVIKQTTKKTTGKYEI 281
              +++TL+            W      +  +         V  +VI + T+   G+Y +
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120

Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
            + +EA       +V+I      T+      +     +          +    P P+V W
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDAL-------VCISESVPEPIVEW 173

Query: 342 SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
               +  +  KE +         +  + E+F  +     C A N +G             
Sbjct: 174 VLCDSQGESCKEESPAVVKKE--EKVLHELFGTD---IRCCARNELGRECTRLFTIDL-- 226

Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
                       L  +  +   P  ++   V       + W    + +   N   M    
Sbjct: 227 -----NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281

Query: 461 TTGECV----LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCR 516
           T    +      +S     D   Y                                 TC 
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYY---------------------------------TCS 308

Query: 517 AENVAGSVTCTATLSLLPESEVTDVMESPRFIKTP--ETAKVMDGQSVLFTAQV 568
           +         +A ++         ++E      T   E  ++   +   F+ + 
Sbjct: 309 SSKHPSQ---SALVT---------IVEKGFINATNSSEDYEIDQYEEFCFSVRF 350

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  115 bits (290), Expect = 4e-28
 Identities = 29/205 (14%), Positives = 60/205 (29%), Gaps = 20/205 (9%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCK-VEGHPLPTMTWQKDGTELHATEHYLIT------ 56
            L       +  +     +P    CK V  +    +TW+ +   L    ++ ++      
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284

Query: 57  TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI 116
           T+  +    + +  + D G YTC ++        SA + ++EK         T   +   
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGF----INATNSSEDYE 337

Query: 117 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 176
            +              P     W   ++   P     ++   +     +S          
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKS-FPCEQKGLDNGYS-----ISKFCNHKHQPG 391

Query: 177 VYSVKAVNTFGRAECRANLVLRKAT 201
            Y   A N   +      L +R  T
Sbjct: 392 EYIFHAENDDAQFTKMFTLNIRSGT 416

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  200 bits (509), Expect = 7e-60
 Identities = 64/300 (21%), Positives = 110/300 (36%), Gaps = 24/300 (8%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
             +    +  V     +   FTC   G P     +   G ++ +T+  ++      S L 
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63

Query: 66  IINPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
           I N   ED G+Y C+AT+  G     +  L + +K        F + + P   +    A 
Sbjct: 64  IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK------LTFREVVSPQEFKQGEDAE 117

Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
           +   V+  P P++ W    EE+   + +            L I      DE +Y  +   
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIYRCEGRV 174

Query: 185 T-FGRAECRANLVLRKATTIDKPRVLEAPTIVRP--LQALLVPKDSTVTLEAEYTGTPTP 241
              G  + R  +V+          V   P I  P         +   +T     +G+P P
Sbjct: 175 EARGEIDFRDIIVI----------VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP 224

Query: 242 EVKWFKNGKEIV-SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
            + WF+NGK I  ++    K + T+L ++       G Y  R  N+AGE      + + V
Sbjct: 225 AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  173 bits (440), Expect = 5e-50
 Identities = 55/311 (17%), Positives = 95/311 (30%), Gaps = 33/311 (10%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           S    + T  L  V            T  G P   I WY  + E +      +       
Sbjct: 1   SMALLQVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQR-VVVQKEGV 58

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
              L+I  A  +D  +Y  +A +  G+  E    L            + +  T    +  
Sbjct: 59  RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE-----------IYQKLTFREVVSP 107

Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTG 277
               +     +    + +P P V W  + +E+ +          N   L I    K   G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEG 166

Query: 278 KYEIRVVNEAGEARTSGSVTITVAEAETVMM-----DVRVESHPTASFQWFIHSEPVVVT 332
            Y      EA        + + V     + M     +   E     +F           +
Sbjct: 167 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS-------CRAS 219

Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA 392
           G P P ++W  +G  ++E ++  +        +L +  +   + G Y C A N  GE   
Sbjct: 220 GSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSDGGPYVCRATNKAGEDEK 276

Query: 393 AATLAVEEKEE 403
            A L V  +  
Sbjct: 277 QAFLQVFVQHH 287

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  171 bits (435), Expect = 3e-49
 Identities = 51/347 (14%), Positives = 101/347 (29%), Gaps = 68/347 (19%)

Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTK 265
           +    +   L  + +    +        G P     +   G++I+S     ++ +   ++
Sbjct: 2   MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTASFQW 322
           L I     +  G Y  +  +  G+ + + +V + + +      V+     +    A    
Sbjct: 62  LTIYNANIEDAGIYRCQATDAKGQTQEA-TVVLEIYQKLTFREVVSPQEFKQGEDAEV-- 118

Query: 323 FIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCT 382
                   V+  P P V+W +    +    +       +    L I  +   + G+Y C 
Sbjct: 119 -----VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCE 171

Query: 383 AVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ--SPATLKATVTGRPTPSIC 440
                   +    + V         P  + P K   A A+     T     +G P P+I 
Sbjct: 172 GRVEARGEIDFRDIIVIVNV----PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 227

Query: 441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
           W+R  + I  +  + ++ + T     L++      D   Y                    
Sbjct: 228 WFRNGKLIEENEKYILKGSNTE----LTVRNIINSDGGPY-------------------- 263

Query: 501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRF 547
                         CRA N AG     A L          V      
Sbjct: 264 -------------VCRATNKAGEDEKQAFLQ---------VFVQHHH 288

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  119 bits (301), Expect = 2e-30
 Identities = 38/261 (14%), Positives = 77/261 (29%), Gaps = 56/261 (21%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
            V +    +  F            G+P  +  ++  G  +   + V + ++     +L I
Sbjct: 13  KVELSVGESKFFT-------CTAIGEPESIDWYNPQGEKIISTQRVVVQKE-GVRSRLTI 64

Query: 369 SEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
                E+AG+Y C A +  G+   A   L + +K        F + + P   +    A +
Sbjct: 65  YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK------LTFREVVSPQEFKQGEDAEV 118

Query: 428 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
              V+  P P++ W    EE+   + +            L I      DE +Y       
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIY------- 168

Query: 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRF 547
                                      C     A        + +     + +V  +   
Sbjct: 169 --------------------------RCEGRVEARGEIDFRDIIV-----IVNVPPAISM 197

Query: 548 IKTPETAKVMDGQSVLFTAQV 568
            +    A    G+ + F+ + 
Sbjct: 198 PQKSFNATAERGEEMTFSCRA 218

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 93.3 bits (232), Expect = 3e-21
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           A    +K     + + +   F+C+  G P P ++W ++G  +   E Y++    S + L 
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELT 251

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
           + N    D G Y C+ATN  G     A L V  +  
Sbjct: 252 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 24/166 (14%), Positives = 39/166 (23%), Gaps = 45/166 (27%)

Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           S    + T  L  V            T  G P   I WY  + E +      +       
Sbjct: 1   SMALLQVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQR-VVVQKEGV 58

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
              L+I  A  +D  +Y                                  C+A +  G 
Sbjct: 59  RSRLTIYNANIEDAGIY---------------------------------RCQATDAKGQ 85

Query: 524 V-TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
               T  L          + +   F +     +   G+      +V
Sbjct: 86  TQEATVVLE---------IYQKLTFREVVSPQEFKQGEDAEVVCRV 122

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  198 bits (504), Expect = 9e-57
 Identities = 62/566 (10%), Positives = 128/566 (22%), Gaps = 101/566 (17%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            P        ++          C   G       W  +  +         T     +   
Sbjct: 36  PPSIHPGKSDLIVRVGDEIRLLCTDPGFV----KWTFEILDE--------TNENKQNEWI 83

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
                  + G YTC   +       S  + V +        K     + +  +  +   +
Sbjct: 84  TEKAEATNTGKYTCTNKHGLSN---SIYVFVRD------PAKLFLVDRSLYGKEDNDTLV 134

Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA-VYSVKAVN 184
           +  +T  P  +    +G +            +P  G   + I                  
Sbjct: 135 RCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAG---IMIKSVKRAYHRLCLHCSVDQ 190

Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EV 243
             G++      +L+             P +     + L+ +    T+        +    
Sbjct: 191 E-GKSVLSEKFILKVRPAFKAV-----PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYS 244

Query: 244 KWFKNGKEIVSKDIETKDNVTK--------LVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295
            W +   +   ++     +           L I       +G +     N  G A  + +
Sbjct: 245 TWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTT 304

Query: 296 VTITVA----EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP-LVTWSHDGTPMKE 350
           + +           +   V V                V     P P    W +      +
Sbjct: 305 LEVVDKGFINIFPMINTTVFVNDGENVDL-------IVEYEAFPKPEHQQWIYMNRTFTD 357

Query: 351 GKEVTIYQDTDGLCK----LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGE 406
             E     + +   +    L ++ +     G Y+    N    A  A  + V  K     
Sbjct: 358 KWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK----- 412

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
            P+          +      L+    G P P+I WY         +   +  +  T    
Sbjct: 413 -PEIL------TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLN-- 463

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
                                 +            I        G V C+A N  G  + 
Sbjct: 464 ---------------------SSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSA 502

Query: 527 TATLSLLPESEVTDVMESPRFIKTPE 552
               +            + +    P 
Sbjct: 503 YFNFA---------FKGNNKEQIHPH 519

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  155 bits (393), Expect = 3e-41
 Identities = 69/497 (13%), Positives = 125/497 (25%), Gaps = 87/497 (17%)

Query: 72  EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG 131
                + C    +  V T S+   V   E     P        +I        L  T  G
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGEP--SPPSIHPGKSDLIVRVGDEIRLLCTDPG 62

Query: 132 RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191
                + W             T E             +A   +   Y+           C
Sbjct: 63  ----FVKWTF------EILDETNENKQNE----WITEKAEATNTGKYT-----------C 97

Query: 192 RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE 251
                L  +  +    V +   +    ++L   +D+   +    T              +
Sbjct: 98  TNKHGLSNSIYVF---VRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGK 154

Query: 252 IVSKDIE-TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDV 310
            + KD+    D    ++IK   +          V++ G++  S    + V  A   +  V
Sbjct: 155 PLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVV 214

Query: 311 RVESHPTASFQWFIHSEPVV----VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCK 365
            V        +     E       +    + +  TW  + +  K  ++   +   D   +
Sbjct: 215 SVSKASYLLRE----GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270

Query: 366 ----LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEA 421
               L IS     ++G++ C A N  G A    TL V +K   G    F      V    
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK---GFINIFPMINTTVFVND 327

Query: 422 QSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 480
                L       P P    W                                P+ E   
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDY------------------PKSENES 369

Query: 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTD 540
           +++  S             L ++++   + G  T    N   +      +          
Sbjct: 370 NIRYVSE------------LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY--------- 408

Query: 541 VMESPRFIKTPETAKVM 557
           V   P  +        M
Sbjct: 409 VNTKPEILTYDRLVNGM 425

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  192 bits (489), Expect = 6e-56
 Identities = 79/410 (19%), Positives = 125/410 (30%), Gaps = 42/410 (10%)

Query: 6   APRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
            P F+++    +       A   CK  G+P+P + W +           L         L
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD-GKL 61

Query: 65  EIINPTKEDI------GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE 118
                  ED        VY C A N  G        +         A  +   +      
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA-----VVAQYYEADVNKEHVI 116

Query: 119 AQSPATLKATV---TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD- 174
             + A +K  +          + W+  +EE                   L I E  P+D 
Sbjct: 117 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 176

Query: 175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE 234
              Y  +  +     E R +    +    +        T     + L +    T++L   
Sbjct: 177 YKSYQCRTKHRLTG-ETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP 235

Query: 235 YTGTPTPEVKWFKNGKEIVSKDIETKDNVTK-----LVIKQTTKKTTGKYEIRVVNEAGE 289
             G P P  +W+K  +    K     ++  K     L+IK    + +GKY   V N  G 
Sbjct: 236 AQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 295

Query: 290 ARTSGSVTITVA-EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
                 +T+T    A+       V+    A F           TG P   V+W  DG  +
Sbjct: 296 ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF-------TCQYTGNPIKTVSWMKDGKAI 348

Query: 349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
              + V           L I  V  E+ G+Y C   N    A A+A L +
Sbjct: 349 GHSESV-----------LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  184 bits (468), Expect = 7e-53
 Identities = 72/451 (15%), Positives = 117/451 (25%), Gaps = 87/451 (19%)

Query: 104 EAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTG 161
           + P F K P   +     + A ++   +G P P I W R     +    G     +    
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK- 60

Query: 162 ECVLSISEATPQD------EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV 215
              L       +D        VY+  A N FG    R   V          R + A    
Sbjct: 61  ---LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHV----------RAVVAQYYE 107

Query: 216 RPLQALLVPKDSTVTLE---AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT-----KLV 267
             +    V + ++  ++     +       V W  + +E      E           +L 
Sbjct: 108 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 167

Query: 268 IKQTTKK-TTGKYEIRVVNEAG-EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH 325
           I++   +     Y+ R  +    E R S +    V          R  +      +  + 
Sbjct: 168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227

Query: 326 SE---PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLYSC 381
                     G P P   W          + V +      +   L I +   E++G Y C
Sbjct: 228 HTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 287

Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 441
              N VG       L V                     +   PA      TG P  ++ W
Sbjct: 288 VVNNSVGGESVETVLTVTA------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341

Query: 442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501
            +  + I                 VL I     +D+ +Y                     
Sbjct: 342 MKDGKAIGHSES------------VLRIESVKKEDKGMY--------------------- 368

Query: 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
                        C   N   S   +A L L
Sbjct: 369 ------------QCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  168 bits (426), Expect = 6e-47
 Identities = 57/305 (18%), Positives = 94/305 (30%), Gaps = 28/305 (9%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGTELHATEHYLITTVES 60
           V+A  +   +      +   A+  C +       +  ++W  D  E +            
Sbjct: 101 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 160

Query: 61  VS--TLEIINPTKED-IGVYTCKATNIGGVATC---SANLIVLEKEESGEAPKFTKPL-K 113
           +    L I     ED    Y C+  +     T    +   +V+ +  S  AP+    + K
Sbjct: 161 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 220

Query: 114 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 173
           P+        +L     G P PS  WY+  E         +          L I +A  +
Sbjct: 221 PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280

Query: 174 DEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA 233
           D   Y     N+ G       L            V    +         V          
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLT-----------VTAPLSAKIDPPTQTVDFGRPAVFTC 329

Query: 234 EYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS 293
           +YTG P   V W K+GK I   +       + L I+   K+  G Y+  V N+   A  S
Sbjct: 330 QYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAEAS 382

Query: 294 GSVTI 298
             + +
Sbjct: 383 AELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  148 bits (374), Expect = 1e-39
 Identities = 65/379 (17%), Positives = 101/379 (26%), Gaps = 69/379 (18%)

Query: 210 EAPTIVR-PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT--KL 266
           + P  ++ P   +     +   +E + +G P PE+ W ++    V      +   +  KL
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61

Query: 267 VIKQTT------KKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPT 317
           V           +     Y     N+ G    S  V +    A   E  +    V    +
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSII-SRDVHVRAVVAQYYEADVNKEHVIRGNS 120

Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT---IYQDTDGLCKLAISEVFPE 374
           A  +  I S           +V+W  D                    G  +L I EV PE
Sbjct: 121 AVIKCLIPSFV----ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPE 174

Query: 375 NA-GLYSCTAVNPVGEAV----AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKA 429
           +    Y C   + +            L + E   S          KP+        +L  
Sbjct: 175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC 234

Query: 430 TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET 489
              G P PS  WY+  E         +          L I +A  +D   Y         
Sbjct: 235 PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY--------- 285

Query: 490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK 549
                                    C   N  G  +    L+         V        
Sbjct: 286 ------------------------LCVVNNSVGGESVETVLT---------VTAPLSAKI 312

Query: 550 TPETAKVMDGQSVLFTAQV 568
            P T  V  G+  +FT Q 
Sbjct: 313 DPPTQTVDFGRPAVFTCQY 331

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 22/177 (12%), Positives = 43/177 (24%), Gaps = 43/177 (24%)

Query: 406 EAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTG 463
           + P F K P   +     + A ++   +G P P I W R     +    G     +    
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK- 60

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
              L       +D                                      C A N  GS
Sbjct: 61  ---LVFPPFRAEDYR---------------------------QEVHAQVYACLARNQFGS 90

Query: 524 V-TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI 579
           + +    +           + +  +        V+ G S +    +       + ++
Sbjct: 91  IISRDVHVR---------AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVV 138

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  182 bits (463), Expect = 2e-54
 Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 4/194 (2%)

Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVES-VS 62
           +AP F E+++ +    +  A   CKV GHP P + W + G E+ A    Y I   +    
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
            L I + T +D  VY  +ATN GG  + +A+L V    +    PK  + +  V A     
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEV 121

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
            ++K   +G+P P I W +G++ I  +  + +     +   ++  +    +D   Y V A
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR-SFTSLVFPNGVERKDAGFYVVCA 180

Query: 183 VNTFGRAECRANLV 196
            N FG  +    L 
Sbjct: 181 KNRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  168 bits (428), Expect = 2e-49
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 10/201 (4%)

Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
             AP F + L+ +    QS ATL   VTG P P + WYR  +EI+ D           G 
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
             L I+  T  D  VY V+A N  G     A+L       ++ P  +  P  +  + A+ 
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASL------EVEVPAKIHLPKTLEGMGAVH 115

Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
             +   V+++  ++G P P + W K    I +      I T+   + +      +K  G 
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175

Query: 279 YEIRVVNEAGEARTSGSVTIT 299
           Y +   N  G  + +  + + 
Sbjct: 176 YVVCAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  152 bits (386), Expect = 2e-43
 Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 18/202 (8%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVT 264
            AP     L+ L V   S  TL  + TG P P VKW++ GKEI++        E K    
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV------MMDVRVESHPTA 318
           +L+I   T      Y++R  N+ G    + S+ + V     +      M  V        
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122

Query: 319 SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
           S +       +  +GKP P++TW      +       +         +  + V  ++AG 
Sbjct: 123 SIK-------IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175

Query: 379 YSCTAVNPVGEAVAAATLAVEE 400
           Y   A N  G       L V +
Sbjct: 176 YVVCAKNRFGIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  149 bits (378), Expect = 3e-42
 Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 43/224 (19%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLA 367
           ++ V     A+           VTG P P+V W   G  +  +G +  I +   G  +L 
Sbjct: 13  NLNVRYQSNATLV-------CKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65

Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
           I+ V  ++A +Y   A N  G     A+L VE   +    PK  + +  V A      ++
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEVVSI 124

Query: 428 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
           K   +G+P P I W +G++ I  +  + +     +   ++  +    +D   Y       
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR-SFTSLVFPNGVERKDAGFY------- 176

Query: 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                                        A+N  G    T  L 
Sbjct: 177 --------------------------VVCAKNRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  108 bits (271), Expect = 2e-27
 Identities = 41/164 (25%), Positives = 57/164 (34%), Gaps = 37/164 (22%)

Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
             AP F + L+ +    QS ATL   VTG P P + WYR  +EI+ D           G 
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
             L I+  T  D  VY                                   RA N  GSV
Sbjct: 62  HQLIIASVTDDDATVY---------------------------------QVRATNQGGSV 88

Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
           + TA+L +    EV   +  P+ ++       + G+ V      
Sbjct: 89  SGTASLEV----EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  107 bits (270), Expect = 4e-27
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
           A++  P+ +E +  V + + +         G P P +TWQK    +    HY +    S 
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 159

Query: 62  STLEIINP-TKEDIGVYTCKATNIGGVATCSANLIVLE 98
           ++L   N   ++D G Y   A N  G+   +  L V +
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  177 bits (450), Expect = 2e-52
 Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 7/193 (3%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVST 63
           AP F + +Q VV  +   A F   + G P+P ++W +DG  +  +      I+  +  + 
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
           L I   TK + G Y+ KATN  G AT +A L+V  +      P F + L+ +     S  
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET---APPNFVQRLQSMTVRQGSQV 121

Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
            L+  VTG PTP + +YR   EI       +          L I+EA P+D   YSV A 
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS--QEGDLYSLLIAEAYPEDSGTYSVNAT 179

Query: 184 NTFGRAECRANLV 196
           N+ GRA   A L+
Sbjct: 180 NSVGRATSTAELL 192

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  167 bits (426), Expect = 4e-49
 Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 11/200 (5%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           + +AP FT+PL+ V+    S AT +A ++G P P + W+R  + I       ++ + + G
Sbjct: 2   TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
              L+I   T  +   YS+KA N  G+A   A L+++  T          P  V+ LQ++
Sbjct: 62  RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET--------APPNFVQRLQSM 113

Query: 222 LVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGK 278
            V + S V L+   TG PTP VK++++G EI S     I  + ++  L+I +   + +G 
Sbjct: 114 TVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGT 173

Query: 279 YEIRVVNEAGEARTSGSVTI 298
           Y +   N  G A ++  + +
Sbjct: 174 YSVNATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  157 bits (398), Expect = 5e-45
 Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 17/201 (8%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDN 262
             +APT  +PLQ+++V + ST T EA  +G P PEV WF++G+ I +       I   D 
Sbjct: 2   TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61

Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA----ETVMMDVRVESHPTA 318
             KL I   TK  +G+Y ++  N +G+A ++  + +    A       +  + V      
Sbjct: 62  RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQV 121

Query: 319 SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
                     V VTG PTP+V +  DG  ++   +  I Q+   L  L I+E +PE++G 
Sbjct: 122 RL-------QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE-GDLYSLLIAEAYPEDSGT 173

Query: 379 YSCTAVNPVGEAVAAATLAVE 399
           YS  A N VG A + A L V+
Sbjct: 174 YSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  149 bits (378), Expect = 3e-42
 Identities = 58/224 (25%), Positives = 81/224 (36%), Gaps = 46/224 (20%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI-YQDTDGLCKLA 367
            V V    TA+F+         ++G P P V+W  DG  +       +    +DG  KL 
Sbjct: 14  SVVVLEGSTATFE-------AHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66

Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
           I  V   N+G YS  A N  G+A + A L V+ +      P F + L+ +     S   L
Sbjct: 67  IPAVTKANSGRYSLKATNGSGQATSTAELLVKAET---APPNFVQRLQSMTVRQGSQVRL 123

Query: 428 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
           +  VTG PTP + +YR   EI       +          L I+EA P+D   Y       
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQIS--QEGDLYSLLIAEAYPEDSGTY------- 174

Query: 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                                     +  A N  G  T TA L 
Sbjct: 175 --------------------------SVNATNSVGRATSTAELL 192

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  110 bits (276), Expect = 5e-28
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 39/165 (23%)

Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           + +AP FT+PL+ V+    S AT +A ++G P P + W+R  + I       ++ + + G
Sbjct: 2   TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
              L+I   T  +   Y                                 + +A N +G 
Sbjct: 62  RAKLTIPAVTKANSGRY---------------------------------SLKATNGSGQ 88

Query: 524 VTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
            T TA L       V      P F++  ++  V  G  V    +V
Sbjct: 89  ATSTAEL------LVKAETAPPNFVQRLQSMTVRQGSQVRLQVRV 127

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  103 bits (259), Expect = 1e-25
 Identities = 29/95 (30%), Positives = 48/95 (50%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
           AE   P F++++Q +   Q        +V G P P + + +DG E+ ++  + I+    +
Sbjct: 99  AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL 158

Query: 62  STLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
            +L I     ED G Y+  ATN  G AT +A L+V
Sbjct: 159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  173 bits (441), Expect = 3e-51
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           AP   ++++ V +   + A  +C++ G PLP + W + G EL  +  Y +++     TL 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPL---KPVIAEAQSP 122
           ++   +ED GVYTC ATN  G    S+ L++         P+F       +       S 
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT------PQFHPGYPLKEKYYGAVGST 120

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ-DEAVYSVK 181
             L     GRP P++ W+ G++ +      T+E         L +     +     Y V+
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE--HYTHLVMKNVQRKTHAGKYKVQ 178

Query: 182 AVNTFGRAECRANLV 196
             N FG  +   ++ 
Sbjct: 179 LSNVFGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  164 bits (416), Expect = 1e-47
 Identities = 56/205 (27%), Positives = 84/205 (40%), Gaps = 20/205 (9%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           SGEAP   K +K V  +    A L   + GRP P I WYR  +E++    + M  +    
Sbjct: 4   SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG--R 61

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL--- 218
              L++     +DE VY+  A N  G  E  + L            +   P         
Sbjct: 62  THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL-----------LLQATPQFHPGYPLK 110

Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKT 275
           +       ST+ L   Y G P P + WF   K + + +   IE  ++ T LV+K   +KT
Sbjct: 111 EKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKT 170

Query: 276 -TGKYEIRVVNEAGEARTSGSVTIT 299
             GKY++++ N  G       V I 
Sbjct: 171 HAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  147 bits (374), Expect = 1e-41
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 16/200 (8%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
           EAP I + ++ +         L  +  G P P++KW++ GKE++      + +      L
Sbjct: 6   EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA----EAETVMMDVRVESHPTASFQW 322
            +    ++  G Y     NE GE  TS  + +           +          T     
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH- 124

Query: 323 FIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPEN-AGLYSC 381
                 V+  G+P P +TW H    ++  + +TI    +    L +  V  +  AG Y  
Sbjct: 125 ------VMYIGRPVPAMTWFHGQKLLQNSENITIENT-EHYTHLVMKNVQRKTHAGKYKV 177

Query: 382 TAVNPVGEAVAAATLAVEEK 401
              N  G   A   + +++K
Sbjct: 178 QLSNVFGTVDAILDVEIQDK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  139 bits (352), Expect = 2e-38
 Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 53/229 (23%)

Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
           M DV  +    A            + G+P P + W   G  + + ++  +  D      L
Sbjct: 14  MKDVTTKLGEAAQLS-------CQIVGRPLPDIKWYRFGKELIQSRKYKMSSD-GRTHTL 65

Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL---KPVIAEAQS 423
            +     E+ G+Y+C A N VGE   ++ L ++        P+F       +       S
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT------PQFHPGYPLKEKYYGAVGS 119

Query: 424 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ-DEAVYSV 482
              L     GRP P++ W+ G++ +      T+E         L +     +     Y  
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE--HYTHLVMKNVQRKTHAGKY-- 175

Query: 483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                                            +  NV G+V     + 
Sbjct: 176 -------------------------------KVQLSNVFGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 99.4 bits (248), Expect = 3e-24
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 47/168 (27%)

Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           SGEAP   K +K V  +    A L   + GRP P I WYR  +E++    + M  +    
Sbjct: 4   SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG--R 61

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
              L++     +DE VY                                 TC A N  G 
Sbjct: 62  THTLTVMTEEQEDEGVY---------------------------------TCIATNEVGE 88

Query: 524 VTCTATLSLLPESEVTDVMESPRFIK---TPETAKVMDGQSVLFTAQV 568
           V  ++ L          +  +P+F       E      G ++      
Sbjct: 89  VETSSKLL---------LQATPQFHPGYPLKEKYYGAVGSTLRLHVMY 127

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 97.1 bits (242), Expect = 2e-23
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 6   APRFIEKI---QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
            P+F       +                 G P+P MTW      L  +E+  I   E  +
Sbjct: 100 TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYT 159

Query: 63  TLEIINPTKE-DIGVYTCKATNIGGVATCSANLIVLEK 99
            L + N  ++   G Y  + +N+ G      ++ + +K
Sbjct: 160 HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  174 bits (442), Expect = 4e-50
 Identities = 56/306 (18%), Positives = 99/306 (32%), Gaps = 30/306 (9%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTV---ESVS 62
            +             +   F C+V G      ++W     E  +     I+ V   +  S
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
           TL I N   +D G+Y C  T   G     + N+ + +K        F     P   +   
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK------LMFKNAPTPQEFKEGE 116

Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
            A +   V     P+I W     +++                 L I      DE  Y  +
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCE 173

Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV--RPLQALLVPKDSTVTLEAEYTGTP 239
                       ++ +          V   PT+   + +         +VTL  +  G P
Sbjct: 174 GRILARGEINFKDIQV---------IVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP 224

Query: 240 TPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
            P + W K+G+ I +++         D+ ++L I+   K    +Y     N+AGE   S 
Sbjct: 225 EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI 284

Query: 295 SVTITV 300
            + +  
Sbjct: 285 HLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  153 bits (389), Expect = 1e-42
 Identities = 49/307 (15%), Positives = 90/307 (29%), Gaps = 29/307 (9%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYR-GKEEILPDNGHTMEFNPTTGEC 163
            +                     V G      I W+    E++ P+              
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 164 VLSISEATPQDEAVYSVKAVNTFG-RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
            L+I  A   D  +Y        G ++E   N+            + +            
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK-----------IFQKLMFKNAPTPQE 111

Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE--TKDNVTKLVIKQTTKKTTGKYE 280
             +     +  +   +  P + W   G++++ K        +   L I+   K   G Y 
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 171

Query: 281 IRVVNEAGEARTSGSVTITVAEAETV-----MMDVRVESHPTASFQWFIHSEPVVVTGKP 335
                 A        + + V    TV     +++       + +             G P
Sbjct: 172 CEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLV-------CDADGFP 224

Query: 336 TPLVTWSHDGTPMKEGKEVTI-YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394
            P ++W+ DG P++  +E    +  +D   +L I  V   +   Y C A N  GE  A+ 
Sbjct: 225 EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI 284

Query: 395 TLAVEEK 401
            L V  K
Sbjct: 285 HLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  149 bits (378), Expect = 4e-41
 Identities = 53/332 (15%), Positives = 90/332 (27%), Gaps = 59/332 (17%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPT-PEVKWFK-NGKEIVSKD-----IETKDNVT 264
             +        +    +     +  G     ++ WF  NG+++         +   D+ +
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVM---MDVRVESHPTASFQ 321
            L I        G Y+  V  E G  ++  +V + + +             +    A   
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI- 120

Query: 322 WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
                    V     P + W H G  +   K+V     ++    L I  +   + G Y C
Sbjct: 121 ------VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRC 172

Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ--SPATLKATVTGRPTPSI 439
                    +    + V         P        V A A      TL     G P P++
Sbjct: 173 EGRILARGEINFKDIQVIVNV----PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTM 228

Query: 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499
            W +  E I  +     +   +     L+I      DEA Y                   
Sbjct: 229 SWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY------------------- 269

Query: 500 LLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                          C AEN AG    +  L 
Sbjct: 270 --------------VCIAENKAGEQDASIHLK 287

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  135 bits (342), Expect = 5e-36
 Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 8/197 (4%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
              F     P    + + A+  C V     PT+ W+  G ++   +      + + + L+
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQ 158

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ--SPA 123
           I    K D G Y C+   +        ++ V+        P        V A A      
Sbjct: 159 IRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV----PPTVQARQSIVNATANLGQSV 214

Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
           TL     G P P++ W +  E I  +     +   +     L+I      DEA Y   A 
Sbjct: 215 TLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 274

Query: 184 NTFGRAECRANL-VLRK 199
           N  G  +   +L V  K
Sbjct: 275 NKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  104 bits (261), Expect = 4e-25
 Identities = 34/274 (12%), Positives = 60/274 (21%), Gaps = 72/274 (26%)

Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE--V 354
              ++  E+     +V                          ++W           +  +
Sbjct: 11  QGEISVGESKFFLCQVAGDA------------------KDKDISWFSPNGEKLSPNQQRI 52

Query: 355 TIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKP 413
           ++  + D    L I     ++AG+Y C      G    A   + + +K        F   
Sbjct: 53  SVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK------LMFKNA 106

Query: 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 473
             P   +    A +   V     P+I W     +++                 L I    
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIK 163

Query: 474 PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
             DE  Y                                  C    +A        + + 
Sbjct: 164 KTDEGTY---------------------------------RCEGRILARGEINFKDIQV- 189

Query: 534 PESEVTDVMESPRFIKTPET--AKVMDGQSVLFT 565
                  V   P          A    GQSV   
Sbjct: 190 ------IVNVPPTVQARQSIVNATANLGQSVTLV 217

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 17/161 (10%), Positives = 32/161 (19%), Gaps = 45/161 (27%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYR-GKEEILPDNGHTMEFNPTTGEC 465
            +                     V G      I W+    E++ P+              
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-V 524
            L+I  A   D  +Y                                  C      G+  
Sbjct: 63  TLTIYNANIDDAGIY---------------------------------KCVVTAEDGTQS 89

Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
             T  +          + +   F   P   +  +G+  +  
Sbjct: 90  EATVNVK---------IFQKLMFKNAPTPQEFKEGEDAVIV 121

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  172 bits (438), Expect = 3e-49
 Identities = 66/342 (19%), Positives = 109/342 (31%), Gaps = 49/342 (14%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVES 60
           A  +      + + +V         +C    G P+    W KDGT L  +E  L+     
Sbjct: 4   AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP--- 60

Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGE---------------- 104
              L+++N + ED G Y+C+      V  C  ++ V +   SG+                
Sbjct: 61  -QRLQVLNASHEDSGAYSCRQRLTQRV-LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118

Query: 105 APKFTKP----LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
           AP +T+P     K +   A +    +    G PTPSI W +   E   ++          
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG-IKLRH 177

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
            +  L +    P D   Y+    N FG       L       + +               
Sbjct: 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL------DVLERSPHRPILQAGLPAN 231

Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE----------------TKDNVT 264
                 S V    +      P ++W K+ +   SK                   T   + 
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
            L +   T +  G+Y     N  G +  S  + +  AE E V
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELV 333

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  162 bits (410), Expect = 3e-45
 Identities = 67/368 (18%), Positives = 105/368 (28%), Gaps = 64/368 (17%)

Query: 207 RVLEAPTI-VRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKDIETKDNVT 264
           R  E P       + L+      V L      G P     W K+G  +V  +        
Sbjct: 3   RAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE-RVLVGPQ 61

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQ--- 321
           +L +   + + +G Y  R            SV +T A +     D   E+  T       
Sbjct: 62  RLQVLNASHEDSGAYSCRQRLTQRVLC-HFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAP 120

Query: 322 WFIHSEPV-----------------VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
           ++   E +                    G PTP ++W  +G   +    +   +      
Sbjct: 121 YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQW 180

Query: 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSP 424
            L +  V P + G Y+C   N  G      TL V E+                 A   S 
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS-PHRPILQAGLPANQTAVLGSD 239

Query: 425 ATLKATVTGRPTPSICWYRGKE----EILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 480
                 V     P I W +  E    ++ PD    +    T G                 
Sbjct: 240 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA---------------- 283

Query: 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTD 540
                       TD    VL +  +T +  G+ TC A N  G    +A L          
Sbjct: 284 ----------NTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV--------- 324

Query: 541 VMESPRFI 548
           V+ +   +
Sbjct: 325 VLPAEEEL 332

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  154 bits (391), Expect = 2e-42
 Identities = 73/341 (21%), Positives = 111/341 (32%), Gaps = 53/341 (15%)

Query: 102 SGEAPKFTK-PLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPT 159
           + E P       + ++  +     L      G P     W +    ++P     +     
Sbjct: 4   AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV----- 58

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR----------VL 209
            G   L +  A+ +D   YS +   T       +  V    ++ D               
Sbjct: 59  -GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDT 117

Query: 210 EAPTIVRP----LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIETKD 261
            AP   RP     + L VP  +TV       G PTP + W KNG+E         I+ + 
Sbjct: 118 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 177

Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------------TVAEA 303
               LV++       G Y   V N+ G  R + ++ +                  T    
Sbjct: 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 237

Query: 304 ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP-MKEGKEVTIYQDTDG 362
             V    +V S      QW  H E       P        DGTP +   K          
Sbjct: 238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP--------DGTPYVTVLKTAGANTTDKE 289

Query: 363 LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEE 403
           L  L++  V  E+AG Y+C A N +G +  +A L V   EE
Sbjct: 290 LEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  117 bits (293), Expect = 5e-29
 Identities = 47/259 (18%), Positives = 70/259 (27%), Gaps = 62/259 (23%)

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
               G P     W  DGT +   + V +        +L +     E++G YSC       
Sbjct: 31  PPPGGGPMGPTVWVKDGTGLVPSERVLVGP-----QRLQVLNASHEDSGAYSCRQRLTQR 85

Query: 389 EAVAAATLAVEEKEESG---------------EAPKFTKP----LKPVIAEAQSPATLKA 429
                +    +                      AP +T+P     K +   A +    + 
Sbjct: 86  VLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRC 145

Query: 430 TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET 489
              G PTPSI W +   E   ++           +  L +    P D   Y         
Sbjct: 146 PAAGNPTPSISWLKNGREFRGEHRIGG-IKLRHQQWSLVMESVVPSDRGNY--------- 195

Query: 490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK 549
                                   TC  EN  GS+  T TL +L  S             
Sbjct: 196 ------------------------TCVVENKFGSIRQTYTLDVLERSPH----RPILQAG 227

Query: 550 TPETAKVMDGQSVLFTAQV 568
            P     + G  V F  +V
Sbjct: 228 LPANQTAVLGSDVEFHCKV 246

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  164 bits (418), Expect = 1e-47
 Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 5/198 (2%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-SVSTL 64
            PRF              A F C+  G P P + W K G ++      +I   + S S L
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65

Query: 65  EIIN-PTKEDIGVYTCKATNIGGVATCSANLIVLEKEES-GEAPKFTKPLKPVIAEAQSP 122
            I    T  D  +Y C A+N  G  + S  L VL +++     P      +  + E    
Sbjct: 66  RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGH-TMEFNPTTGECVLSISEATPQDEAVYSVK 181
           AT+    +G P P I W++    +   N +  ++   +     L I ++   D+  Y   
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185

Query: 182 AVNTFGRAE-CRANLVLR 198
           A N+ G      ANL +R
Sbjct: 186 ATNSAGTRYSAPANLYVR 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  145 bits (367), Expect = 2e-40
 Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 13/212 (6%)

Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
           E     P+FT+        +   A+     TG P P I W +  +++       +EF+  
Sbjct: 1   ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60

Query: 160 TGECVLSISEA-TPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL 218
           +G  VL I    TP+DEA+Y   A N  G       L + +   I +      PTI    
Sbjct: 61  SG-SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR----GFPTIDMGP 115

Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD------IETKDNVTKLVIKQTT 272
           Q  +V +  T T+    +G P PE+ WFK+   + + +          +++  L I+Q+ 
Sbjct: 116 QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSE 175

Query: 273 KKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
           +   GKYE    N AG   ++    + V   +
Sbjct: 176 ESDQGKYECVATNSAGTRYSA-PANLYVRGTK 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  135 bits (341), Expect = 7e-37
 Identities = 47/240 (19%), Positives = 75/240 (31%), Gaps = 47/240 (19%)

Query: 299 TVAEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
           T           +D    S   ASF           TG P P + W+  G  +   +   
Sbjct: 2   TGETPPRFTRTPVDQTGVSGGVASF-------ICQATGDPRPKIVWNKKGKKVSNQRFEV 54

Query: 356 IYQDTDGLCKLAISEV-FPENAGLYSCTAVNPVGEAVAAATLAVEEKEES-GEAPKFTKP 413
           I  D      L I  +  P +  +Y C A N VGE   +  L V  +++     P     
Sbjct: 55  IEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMG 114

Query: 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGH-TMEFNPTTGECVLSISEA 472
            +  + E    AT+    +G P P I W++    +   N +  ++   +     L I ++
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQS 174

Query: 473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-VTCTATLS 531
              D+  Y                                  C A N AG+  +  A L 
Sbjct: 175 EESDQGKY---------------------------------ECVATNSAGTRYSAPANLY 201

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  130 bits (329), Expect = 3e-35
 Identities = 42/212 (19%), Positives = 67/212 (31%), Gaps = 23/212 (10%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNV 263
               P   R             +   + TG P P++ W K GK++ ++          + 
Sbjct: 3   GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62

Query: 264 TKLVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTITVAEAET--------VMMDVRVES 314
           + L I+          YE    N  GE   S  +T+   +                 VE 
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122

Query: 315 HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ--DTDGLCKLAISEVF 372
             TA+            +G P P +TW  D  P+         +   ++ +  L I +  
Sbjct: 123 TRTATML-------CAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSE 175

Query: 373 PENAGLYSCTAVNPVGEAV-AAATLAVEEKEE 403
             + G Y C A N  G    A A L V   + 
Sbjct: 176 ESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 96.0 bits (239), Expect = 7e-23
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 37/168 (22%)

Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
           E     P+FT+        +   A+     TG P P I W +  +++       +EF+  
Sbjct: 1   ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60

Query: 462 TGECVLSISEA-TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
           +G  VL I    TP+DEA+Y                                  C A N 
Sbjct: 61  SG-SVLRIQPLRTPRDEAIY---------------------------------ECVASNN 86

Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
            G ++ +  L++L E ++      P     P+   V   ++       
Sbjct: 87  VGEISVSTRLTVLREDQIPRGF--PTIDMGPQLKVVERTRTATMLCAA 132

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 91.8 bits (228), Expect = 2e-21
 Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE---HYLITTVESVS 62
            P      Q  V  + + A   C   G+P P +TW KD   +  +           ES+ 
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEE 101
            L+I    + D G Y C ATN  G   +  ANL V   + 
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  161 bits (409), Expect = 5e-45
 Identities = 47/323 (14%), Positives = 82/323 (25%), Gaps = 41/323 (12%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCK-------VEGHPLPTMTWQKDGTELHATEHYLITTV 58
                   +     + +P    C            P   +TW K+ +             
Sbjct: 18  CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77

Query: 59  ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAE 118
                L ++   +ED G Y C   N       S  L V E  +            P I  
Sbjct: 78  AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD----AFLPFISYPQILT 133

Query: 119 AQSPATL-----KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 173
             +   L           +    I WY+    +  DN   +      G   L + +   +
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR---GTTHLLVHDVALE 190

Query: 174 DEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE- 232
           D   Y           +      +     I K +    P I+ PL+ +     S +T+  
Sbjct: 191 DAGYYRCVLTFAHEGQQYNITRSIE--LRIKKKKEETIPVIISPLKTISASLGSRLTIPC 248

Query: 233 --AEYTGTPTPEVKWFKNGKEIVSKDI----------------ETKDNVTKLVIKQTTKK 274
                TGTP   + W+      +                            L+    T++
Sbjct: 249 KVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRE 308

Query: 275 TTG-KYEIRVVNEAGEARTSGSV 296
                ++  V N         +V
Sbjct: 309 DLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  137 bits (346), Expect = 3e-36
 Identities = 52/352 (14%), Positives = 92/352 (26%), Gaps = 68/352 (19%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEY-------TGTPTPEVKWFKNGKEI-VSKDIETKD 261
                 R  +     +   V L           + +P   + W KN     V  + ET+ 
Sbjct: 17  SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76

Query: 262 NVTK--LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV---AEAETVMMDVRVESHP 316
                 L +    ++ +G Y     N +   + S  + +     A    +     +    
Sbjct: 77  WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136

Query: 317 TASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
           +                K    + W  D   + +  E  +         L + +V  E+A
Sbjct: 137 SGVLV--CPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT--HLLVHDVALEDA 192

Query: 377 GLYSCTAVNPVGEAVAAATLAVE---EKEESGEAPKFTKPLKPVIAEAQSPATLKATV-- 431
           G Y C             T ++E   +K++    P    PLK + A   S  T+   V  
Sbjct: 193 GYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFL 252

Query: 432 -TGRPTPSICWYRGKEEILPD-----------NGHTMEFNPTTGECVLSISEATPQDE-A 478
            TG P  ++ W+   +  +                  E N    E  L     T +D   
Sbjct: 253 GTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312

Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530
            +                                  C   N     T   T+
Sbjct: 313 DF---------------------------------KCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  134 bits (339), Expect = 3e-35
 Identities = 39/334 (11%), Positives = 89/334 (26%), Gaps = 42/334 (12%)

Query: 95  IVLEKEESGEAPKFTKPLKPVIAEAQSPATLK-------ATVTGRPTPSICWYRGKEEIL 147
                  +       +  K        P  L+          +  P  ++ W++      
Sbjct: 8   PAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART 67

Query: 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
                        G   L +  A  +D   Y     N     +    L + + T    P 
Sbjct: 68  VPGEEETRMWAQDG--ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPF 125

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNVTK 265
           +     +      +LV  D    L          +++W+K+   +   +    +    T 
Sbjct: 126 ISYPQILTLSTSGVLVCPD----LSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTH 181

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM----------DVRVESH 315
           L++     +  G Y   +       + + + +I +   +               +     
Sbjct: 182 LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLG 241

Query: 316 PTASFQWFIHSEPVVVTGKPTPLVTW----------SHDGTPMKEG--KEVTIYQDTDGL 363
              +       +  + TG P   + W          ++ G  + EG  +E +   +    
Sbjct: 242 SRLTI----PCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIE 297

Query: 364 CKLAISEVFPENAGL-YSCTAVNPVGEAVAAATL 396
             L    V  E+  + + C   N +       T+
Sbjct: 298 VPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  122 bits (308), Expect = 5e-31
 Identities = 34/277 (12%), Positives = 61/277 (22%), Gaps = 46/277 (16%)

Query: 308 MDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLA 367
                      + +       +  +  P   +TW  + +      E            L 
Sbjct: 26  KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQD-GALW 84

Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
           +     E++G Y CT  N       +  L V E  +            P I    +   L
Sbjct: 85  LLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD----AFLPFISYPQILTLSTSGVL 140

Query: 428 -----KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 482
                      +    I WY+    +  DN   +      G   L + +   +D   Y  
Sbjct: 141 VCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR---GTTHLLVHDVALEDAGYY-- 195

Query: 483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVM 542
                                           C             T S+    +     
Sbjct: 196 -------------------------------RCVLTFAHEGQQYNITRSIELRIKKKKEE 224

Query: 543 ESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPLI 579
             P  I   +T     G  +    +V       +  +
Sbjct: 225 TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTM 261

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 56.6 bits (136), Expect = 8e-09
 Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 17/109 (15%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKV---EGHPLPTMTWQKDGTELHATEHYLITTVE 59
           E   P  I  ++ + +         CKV    G PL TM W         + +      E
Sbjct: 223 EETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE 282

Query: 60  S-------------VSTLEIINPTKEDIGV-YTCKATNIGGVATCSANL 94
                            L     T+ED+ + + C   N     T    +
Sbjct: 283 GPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 54.7 bits (131), Expect = 4e-08
 Identities = 18/173 (10%), Positives = 35/173 (20%), Gaps = 48/173 (27%)

Query: 392 AAATLAVEEKEESGE-APKFTKPLKPVIAEAQSPATLK-------ATVTGRPTPSICWYR 443
              TL       +        +  K        P  L+          +  P  ++ W++
Sbjct: 2   DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK 61

Query: 444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503
                              G   L +  A  +D   Y                       
Sbjct: 62  NDSARTVPGEEETRMWAQDG--ALWLLPALQEDSGTY----------------------- 96

Query: 504 KITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKV 556
                      C   N +     +  L +   ++         FI  P+   +
Sbjct: 97  ----------VCTTRNASYCDKMSIELRVFENTDAF-----LPFISYPQILTL 134

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  157 bits (399), Expect = 6e-44
 Identities = 74/328 (22%), Positives = 126/328 (38%), Gaps = 45/328 (13%)

Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVES-VS 62
           +AP F E+++ +    +  A   CKV GHP P + W + G E+ A    Y I   +    
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
            L I + T +D  VY  +ATN GG  + +A+L V    +    PK  + +  V A     
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEV 121

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
            ++K   +G+P P I W +G++ I  +  + +     +   ++  +    +D   Y V A
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR-SFTSLVFPNGVERKDAGFYVVCA 180

Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE 242
            N FG  +    L +      D P   + P  V+           +V L           
Sbjct: 181 KNRFGIDQKTVELDVA-----DVP---DPPRGVKVSDV----SRDSVNLT---------- 218

Query: 243 VKW----FKNGKEIVSKDIETKDNVTKLVIKQTTKKTTG----------KYEIRV--VNE 286
             W       G +I +  +E      +  ++    + T            Y+ RV   N+
Sbjct: 219 --WTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENK 276

Query: 287 AGEARTSG-SVTITVAEAETVMMDVRVE 313
            G ++ S  S      E +T  M+   E
Sbjct: 277 FGLSKPSEPSEPTITKEDKTRAMNYDEE 304

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  154 bits (390), Expect = 1e-42
 Identities = 52/201 (25%), Positives = 80/201 (39%), Gaps = 10/201 (4%)

Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
             AP F + L+ +    QS ATL   VTG P P + WYR  +EI+ D           G 
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
             L I+  T  D  VY V+A N  G     A+L +     I  P+ LE    V       
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH------ 115

Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGK 278
             +   V+++  ++G P P + W K    I +      I T+   + +      +K  G 
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175

Query: 279 YEIRVVNEAGEARTSGSVTIT 299
           Y +   N  G  + +  + + 
Sbjct: 176 YVVCAKNRFGIDQKTVELDVA 196

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  134 bits (340), Expect = 1e-35
 Identities = 49/225 (21%), Positives = 80/225 (35%), Gaps = 26/225 (11%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVT 264
            AP     L+ L V   S  TL  + TG P P VKW++ GKEI++        E K    
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV------MMDVRVESHPTA 318
           +L+I   T      Y++R  N+ G    + S+ + V     +      M  V        
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122

Query: 319 SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
           S +       +  +GKP P++TW      +       +         +  + V  ++AG 
Sbjct: 123 SIK-------IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175

Query: 379 YSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQS 423
           Y   A N  G       L V +  +         P    +++   
Sbjct: 176 YVVCAKNRFGIDQKTVELDVADVPDP--------PRGVKVSDVSR 212

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  124 bits (314), Expect = 4e-32
 Identities = 53/242 (21%), Positives = 89/242 (36%), Gaps = 49/242 (20%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK-EGKEVTIYQDTDGLCKLA 367
           ++ V     A+           VTG P P+V W   G  +  +G +  I +   G  +L 
Sbjct: 13  NLNVRYQSNATLV-------CKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65

Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATL 427
           I+ V  ++A +Y   A N  G     A+L VE   +    PK  + +  V A      ++
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEVVSI 124

Query: 428 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST 487
           K   +G+P P I W +G++ I  +  + +                               
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQV------------------------------- 153

Query: 488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRF 547
              I+T    S++  + + R   G     A+N  G    T  L      +V DV + PR 
Sbjct: 154 ---IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL------DVADVPDPPRG 204

Query: 548 IK 549
           +K
Sbjct: 205 VK 206

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 9/121 (7%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
           A++  P+ +E +  V + + +         G P P +TWQK    +    HY +    S 
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 159

Query: 62  STLEIINPT-KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
           ++L   N   ++D G Y   A N  G+   +  L V +  +         P    +++  
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP--------PRGVKVSDVS 211

Query: 121 S 121
            
Sbjct: 212 R 212

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 41/164 (25%), Positives = 57/164 (34%), Gaps = 37/164 (22%)

Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
             AP F + L+ +    QS ATL   VTG P P + WYR  +EI+ D           G 
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
             L I+  T  D  VY                                   RA N  GSV
Sbjct: 62  HQLIIASVTDDDATVY---------------------------------QVRATNQGGSV 88

Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
           + TA+L +    EV   +  P+ ++       + G+ V      
Sbjct: 89  SGTASLEV----EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  158 bits (401), Expect = 3e-43
 Identities = 64/311 (20%), Positives = 109/311 (35%), Gaps = 33/311 (10%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-------HYLITTVE 59
           P  I+  +   +++       C  EG P+P +TW++       TE          +    
Sbjct: 2   PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 60  SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA 119
             S+L I +    D G Y C+A +  G    S  L +        APKF        +  
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY------APKFISNQTIYYSWE 114

Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
            +P  +   V   P  SI W R K  +   N   ++   T  + +L I+  +  D   Y+
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174

Query: 180 VKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDS-TVTLEAEYTGT 238
             A N  G       L            + + P+    ++ + + + +  V+     +  
Sbjct: 175 CTATNHIGTRFQEYIL-----------ALADVPSSPYGVKIIELSQTTAKVSFNKPDSHG 223

Query: 239 PTPEVKWFKNGKEIVS---KDIETKDNVTKLVIKQTTKKTTGKYEIRV--VNEAGEARTS 293
             P   +  + KE+ S   K + +    T +V+      TT  YEIRV  VN  G+   S
Sbjct: 224 GVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTT--YEIRVAAVNGKGQGDYS 281

Query: 294 GSVTITVAEAE 304
                      
Sbjct: 282 KIEIFQTLPVR 292

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  134 bits (339), Expect = 9e-35
 Identities = 48/322 (14%), Positives = 87/322 (27%), Gaps = 46/322 (14%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM-----EFNPTT 160
           P   +  K          TL     G P P I W R  +      G        E     
Sbjct: 2   PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
           G   L I +    D   Y  +A +  G  +    L            +  AP  +     
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD-----------IEYAPKFISNQTI 109

Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKT 275
               + + + +  +    P   + W ++   + +K+       +      L I  T+   
Sbjct: 110 YYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDND 169

Query: 276 TGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE--SHPTASFQW----FIHSEPV 329
            G+Y     N  G         + +A+  +    V++   S  TA   +         P+
Sbjct: 170 FGRYNCTATNHIGTR--FQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPI 227

Query: 330 ---VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
               V  K      W              I +       + ++ + P         AVN 
Sbjct: 228 HHYQVDVKEVASEIW-------------KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274

Query: 387 VGEAVAAATLAVEEKEESGEAP 408
            G+   +     +       +P
Sbjct: 275 KGQGDYSKIEIFQTLPVREPSP 296

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  115 bits (289), Expect = 5e-28
 Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 20/212 (9%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----------IETKD 261
           P I++  +     ++  VTL  +  G P PE+ W +        +          ++ + 
Sbjct: 2   PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA-EAETVMMDVRVESHPTASF 320
             + L IK      +G+Y+    +  G  + S  + I  A +  +             + 
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINI 120

Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG-LCKLAISEVFPENAGLY 379
                     V   P   + W  D   +       +   + G    L I+     + G Y
Sbjct: 121 S-------CDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173

Query: 380 SCTAVNPVGEAVAAATLAVEEKEESGEAPKFT 411
           +CTA N +G       LA+ +   S    K  
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSPYGVKII 205

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  114 bits (288), Expect = 6e-28
 Identities = 45/255 (17%), Positives = 74/255 (29%), Gaps = 58/255 (22%)

Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQD------T 360
           + +     +   +             G+P P +TW          +              
Sbjct: 7   LKNETTYENGQVTLV-------CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAE 420
            G   L I +V   ++G Y C A + +G    +  L +E       APKF        + 
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY------APKFISNQTIYYSW 113

Query: 421 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY 480
             +P  +   V   P  SI W R K  +   N   ++   T  + +L I+  +  D   Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173

Query: 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTD 540
                                             C A N  G+      L       + D
Sbjct: 174 ---------------------------------NCTATNHIGTRFQEYIL------ALAD 194

Query: 541 VMESPRFIKTPETAK 555
           V  SP  +K  E ++
Sbjct: 195 VPSSPYGVKIIELSQ 209

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  100 bits (251), Expect = 5e-23
 Identities = 56/303 (18%), Positives = 102/303 (33%), Gaps = 47/303 (15%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA--TEHYLITTVESVST 63
           AP+FI       S +  P   +C V+ +P  ++ W++D   L A  T +    +      
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA-QSP 122
           LEI   +  D G Y C ATN  G       L + +   S        P    I E  Q+ 
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSS--------PYGVKIIELSQTT 211

Query: 123 ATL--KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
           A +      +    P   +    +E+  +    +  +      V  ++   P       V
Sbjct: 212 AKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV--LNNLEPNTTYEIRV 269

Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTP 239
            AVN  G+ +   + +    T   +      P+I  +P          +  L      + 
Sbjct: 270 AAVNGKGQGD--YSKIEIFQTLPVREP--SPPSIHGQPSS------GKSFKL------SI 313

Query: 240 TPE-----------VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV--VNE 286
           T +           VK+    KE    + + + N   ++++         YE+++   N 
Sbjct: 314 TKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMG--YEVQITAANR 371

Query: 287 AGE 289
            G 
Sbjct: 372 LGY 374

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 26/169 (15%), Positives = 41/169 (24%), Gaps = 38/169 (22%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
           P   +  K          TL     G P P I W R  +      G              
Sbjct: 2   PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGD------------- 47

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
                          K+     ++      S L I  +     G   C A +  G    +
Sbjct: 48  ---------------KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS 92

Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
             L          +  +P+FI         +G  +  +  V  +    I
Sbjct: 93  MYLD---------IEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  151 bits (383), Expect = 8e-43
 Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 20/219 (9%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE-HYLITTVESVSTL 64
            P  I K Q         A F C   G P P++ W+K+G ++  T+  Y +       ++
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65

Query: 65  EIINPTK--EDIGVYTCKATN-IGGVATCSANLIVLEKEES-GEAPKFTKPLKPVIAEAQ 120
             I P +   D   Y C A N +G   +  A L + E +++    P  T+     + E  
Sbjct: 66  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125

Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
               +     G PTP+I W + + ++   N        +  +  L I  +  +D+  Y  
Sbjct: 126 HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-----SLKDGFLQIENSREEDQGKYEC 180

Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
            A N+ G    +A  +           V       +   
Sbjct: 181 VAENSMGTEHSKATNL----------YVKVRRVGTKHHH 209

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  124 bits (312), Expect = 9e-33
 Identities = 48/223 (21%), Positives = 71/223 (31%), Gaps = 35/223 (15%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDN 262
               P I+R  Q   V      +      G P P + W KNGK++         +E    
Sbjct: 3   GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62

Query: 263 VTKLVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTITVAEAETV----------MMDVR 311
           ++ L I+          YE    N  G+A  S   T+T+ E +                 
Sbjct: 63  ISILRIEPVRAGRDDAPYECVAENGVGDAV-SADATLTIYEGDKTPAGFPVITQGPGTRV 121

Query: 312 VESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEV 371
           +E   T               G PTP + W  + T +         +D      L I   
Sbjct: 122 IEVGHTVLMT-------CKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF----LQIENS 170

Query: 372 FPENAGLYSCTAVNPVGEAVA-AATLAVEEKEESGEAPKFTKP 413
             E+ G Y C A N +G   + A  L V+ +         TK 
Sbjct: 171 REEDQGKYECVAENSMGTEHSKATNLYVKVR------RVGTKH 207

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  122 bits (308), Expect = 4e-32
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 9/209 (4%)

Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
           E     P+  +  +         A+      G P PSI W +  +++             
Sbjct: 1   ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60

Query: 160 TGECVLSISEAT-PQDEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRP 217
            G  +L I      +D+A Y   A N  G A    A L +              P I + 
Sbjct: 61  GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI----YEGDKTPAGFPVITQG 116

Query: 218 LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTKLVIKQTTKKTT 276
               ++    TV +  +  G PTP + W KN  ++ +S    +  +   L I+ + ++  
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-GFLQIENSREEDQ 175

Query: 277 GKYEIRVVNEAGEARTSGSVTITVAEAET 305
           GKYE    N  G   +  +  + V     
Sbjct: 176 GKYECVAENSMGTEHSK-ATNLYVKVRRV 203

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  120 bits (302), Expect = 2e-31
 Identities = 52/262 (19%), Positives = 81/262 (30%), Gaps = 60/262 (22%)

Query: 299 TVAEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE-GKEV 354
           T A          +  V     ASF            G P P + W  +G  +       
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFY-------CAARGDPPPSIVWRKNGKKVSGTQSRY 54

Query: 355 TIYQDTDGLCKLAISEVF-PENAGLYSCTAVNPVGEAVAA-ATLAVEEKEES-GEAPKFT 411
           T+ +   G+  L I  V    +   Y C A N VG+AV+A ATL + E +++    P  T
Sbjct: 55  TVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT 114

Query: 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
           +     + E      +     G PTP+I W + + ++   N        +  +  L I  
Sbjct: 115 QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-----SLKDGFLQIEN 169

Query: 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
           +  +D+  Y                                  C AEN  G+    AT  
Sbjct: 170 SREEDQGKY---------------------------------ECVAENSMGTEHSKAT-- 194

Query: 532 LLPESEVTDVMESPRFIKTPET 553
                 +  V       K    
Sbjct: 195 -----NLY-VKVRRVGTKHHHH 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 80.2 bits (198), Expect = 2e-17
 Identities = 31/169 (18%), Positives = 51/169 (30%), Gaps = 37/169 (21%)

Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
           E     P+  +  +         A+      G P PSI W +  +++             
Sbjct: 1   ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60

Query: 462 TGECVLSISEAT-PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
            G  +L I      +D+A Y                                  C AEN 
Sbjct: 61  GGISILRIEPVRAGRDDAPY---------------------------------ECVAENG 87

Query: 521 AG-SVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
            G +V+  ATL++    +       P   + P T  +  G +VL T + 
Sbjct: 88  VGDAVSADATLTIYEGDK--TPAGFPVITQGPGTRVIEVGHTVLMTCKA 134

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  152 bits (385), Expect = 7e-42
 Identities = 52/323 (16%), Positives = 92/323 (28%), Gaps = 35/323 (10%)

Query: 4   VLAPRFIEKIQP--VVSHQEQPALFTCKVEGHP-LPTMTWQKDGTELHATEHYLITTVES 60
           + A +  E+ +   +VS   +  +  C +  +    T+TW KD ++   +        + 
Sbjct: 1   LEADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH 60

Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
              L  +    ED G Y C   N         +   +E E +       + +        
Sbjct: 61  KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPN--LCYNAQAIFKQKLPVA 118

Query: 121 SPATLK------ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
               L               P + WY+  + +L DN H            L +     + 
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR-----LIVMNVAEKH 173

Query: 175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL-QALLVPKDSTVTLEA 233
              Y+  A  T+   +     V+       +      P IV P  + + V   S + L  
Sbjct: 174 RGNYTCHASYTYLGKQYPITRVIE--FITLEENKPTRPVIVSPANETMEVDLGSQIQLIC 231

Query: 234 EYTGTPTPEVKWFKNGKEIVSKD---------------IETKDNVTKLVIKQTTKK-TTG 277
             TG  +    W  NG  I   D                     +T L I +   +    
Sbjct: 232 NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKH 291

Query: 278 KYEIRVVNEAGEARTSGSVTITV 300
            +     N  G       +   V
Sbjct: 292 PFTCFAKNTHGIDAAYIQLIYPV 314

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  129 bits (326), Expect = 1e-33
 Identities = 52/338 (15%), Positives = 85/338 (25%), Gaps = 44/338 (13%)

Query: 209 LEAPTIV--RPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEI---VSKDIETKDN 262
           LEA           L+   +                 + W+K+  +      +      +
Sbjct: 1   LEADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH 60

Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA-----ETVMMDVRVESHPT 317
             KL       + +G Y   V N +   R   S      E         +   ++     
Sbjct: 61  KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD 120

Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAG 377
                  + E         P + W  D  P+                +L +  V  ++ G
Sbjct: 121 GGLVCP-YMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD----RLIVMNVAEKHRG 175

Query: 378 LYSCTAVNPVGEAVAAATLAVE---EKEESGEAPKFTKPLKPVI-AEAQSPATLKATVTG 433
            Y+C A           T  +E    +E     P    P    +  +  S   L   VTG
Sbjct: 176 NYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTG 235

Query: 434 RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493
           + +    W      I  D+    E   +                                
Sbjct: 236 QLSDIAYWKWNGSVIDEDDPVLGEDYYSV-----------------------ENPANKRR 272

Query: 494 DGNRSVLLISKIT-RDQIGDVTCRAENVAGSVTCTATL 530
               +VL IS+I  R      TC A+N  G       L
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  126 bits (318), Expect = 1e-32
 Identities = 44/315 (13%), Positives = 92/315 (29%), Gaps = 28/315 (8%)

Query: 104 EAPKFTKPLKP--VIAEAQSPATLKATVTGRPTP-SICWYR--GKEEILPDNGHTMEFNP 158
           EA K  +  +   +++ A         +       +I WY+   K  +  +    +  + 
Sbjct: 2   EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH- 60

Query: 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRP 217
              +  L    A  +D   Y     N+      + +   +     +           +  
Sbjct: 61  ---KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPV 117

Query: 218 LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTG 277
                +        + E      P+++W+K+ K ++  +I       +L++    +K  G
Sbjct: 118 AGDGGLVCPYMEFFKNE--NNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRG 175

Query: 278 KYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTG 333
            Y           +   +  I     E       V   P            +     VTG
Sbjct: 176 NYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTG 235

Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQ-----------DTDGLCKLAISEVFPEN-AGLYSC 381
           + + +  W  +G+ + E   V                +  +  L ISE+        ++C
Sbjct: 236 QLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC 295

Query: 382 TAVNPVGEAVAAATL 396
            A N  G   A   L
Sbjct: 296 FAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 96.3 bits (239), Expect = 4e-22
 Identities = 34/248 (13%), Positives = 60/248 (24%), Gaps = 52/248 (20%)

Query: 330 VVTGKPTPLVTWSHDGT--PMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
           +   +    +TW  D +  P+   +   I+Q  + L          E++G Y C   N  
Sbjct: 29  LNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLW---FVPAKVEDSGHYYCVVRNSS 85

Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK------ATVTGRPTPSICW 441
                  +    E E +       + +            L               P + W
Sbjct: 86  YCLRIKISAKFVENEPN--LCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW 143

Query: 442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL 501
           Y+  + +L DN H            L +     +    Y                     
Sbjct: 144 YKDCKPLLLDNIHFSGVKDR-----LIVMNVAEKHRGNY--------------------- 177

Query: 502 ISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK-TPETAKVMDGQ 560
                       TC A           T  +   +   +    P  +    ET +V  G 
Sbjct: 178 ------------TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGS 225

Query: 561 SVLFTAQV 568
            +     V
Sbjct: 226 QIQLICNV 233

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 15/165 (9%), Positives = 35/165 (21%), Gaps = 47/165 (28%)

Query: 406 EAPKFTKPLKP--VIAEAQSPATLKATVTGRPTP-SICWYR--GKEEILPDNGHTMEFNP 460
           EA K  +  +   +++ A         +       +I WY+   K  +  +    +  + 
Sbjct: 2   EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH- 60

Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
              +  L    A  +D   Y                                  C   N 
Sbjct: 61  ---KEKLWFVPAKVEDSGHY---------------------------------YCVVRNS 84

Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
           +  +    +   +             F +      +         
Sbjct: 85  SYCLRIKISAKFVENEPNLCYNAQAIFKQK-----LPVAGDGGLV 124

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  148 bits (374), Expect = 8e-42
 Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 11/193 (5%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
              F E + P    Q + A   C+V   P P ++W     E+          + + + L+
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQ 60

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ--SPA 123
           I+N  K D G+Y C+            ++IV+        P  + P K   A A+     
Sbjct: 61  ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN----VPPAISMPQKSFNATAERGEEM 116

Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
           T     +G P P+I W+R  + I  +  + ++ + T     L++      D   Y  +A 
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE----LTVRNIINSDGGPYVCRAT 172

Query: 184 NTFGRAECRANLV 196
           N  G  E +A L 
Sbjct: 173 NKAGEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  121 bits (304), Expect = 6e-32
 Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 11/197 (5%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
              F + + P   +    A +   V+  P P++ W    EE+   + +            
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---N 58

Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVP 224
           L I      DE +Y  +            ++++          V  A ++ +        
Sbjct: 59  LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN-------VPPAISMPQKSFNATAE 111

Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIV-SKDIETKDNVTKLVIKQTTKKTTGKYEIRV 283
           +   +T     +G+P P + WF+NGK I  ++    K + T+L ++       G Y  R 
Sbjct: 112 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRA 171

Query: 284 VNEAGEARTSGSVTITV 300
            N+AGE      + + V
Sbjct: 172 TNKAGEDEKQAFLQVFV 188

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  119 bits (301), Expect = 2e-31
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 17/198 (8%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI--VSKDIETKDNVTKLVI 268
             T    +      +     +    + +P P V W  + +E+  +S +         L I
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61

Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM-----DVRVESHPTASFQWF 323
               K   G Y      EA        + + V     + M     +   E     +F   
Sbjct: 62  LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTF--- 118

Query: 324 IHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
                   +G P P ++W  +G  ++E ++  +        +L +  +   + G Y C A
Sbjct: 119 ----SCRASGSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSDGGPYVCRA 171

Query: 384 VNPVGEAVAAATLAVEEK 401
            N  GE    A L V  +
Sbjct: 172 TNKAGEDEKQAFLQVFVQ 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  114 bits (286), Expect = 2e-29
 Identities = 36/204 (17%), Positives = 60/204 (29%), Gaps = 45/204 (22%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
            V+  P P V+W +    +    +       +    L I  +   + G+Y C        
Sbjct: 25  RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCEGRVEARG 82

Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ--SPATLKATVTGRPTPSICWYRGKEE 447
            +    + V         P  + P K   A A+     T     +G P P+I W+R  + 
Sbjct: 83  EIDFRDIIVIVNV----PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL 138

Query: 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
           I  +  + ++ + T     L++      D   Y                           
Sbjct: 139 IEENEKYILKGSNTE----LTVRNIINSDGGPY--------------------------- 167

Query: 508 DQIGDVTCRAENVAGSVTCTATLS 531
                  CRA N AG     A L 
Sbjct: 168 ------VCRATNKAGEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 92.2 bits (229), Expect = 9e-22
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           A    +K     + + +   F+C+  G P P ++W ++G  +   E Y++    S + L 
Sbjct: 98  AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELT 155

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
           + N    D G Y C+ATN  G     A L V  +
Sbjct: 156 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 72.9 bits (179), Expect = 4e-15
 Identities = 20/162 (12%), Positives = 41/162 (25%), Gaps = 41/162 (25%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
              F + + P   +    A +   V+  P P++ W    EE+   + +            
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---N 58

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
           L I      DE +Y                                  C     A     
Sbjct: 59  LQILNINKSDEGIY---------------------------------RCEGRVEARGEID 85

Query: 527 TATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
              + +     + +V  +    +    A    G+ + F+ + 
Sbjct: 86  FRDIIV-----IVNVPPAISMPQKSFNATAERGEEMTFSCRA 122

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  147 bits (373), Expect = 2e-41
 Identities = 26/196 (13%), Positives = 55/196 (28%), Gaps = 17/196 (8%)

Query: 16  VVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDI 74
            +    +       V        + W  +G+ +  ++            L+I  PT  D 
Sbjct: 12  KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 71

Query: 75  GVYTCKATNIGGVATCSANLIVLEKE---------------ESGEAPKFTKPLKPVIAEA 119
           G Y  +  +       + +L     +               E   A         V  + 
Sbjct: 72  GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131

Query: 120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS 179
                L   V G P P + W + ++ +   +   ++F         +I+  +  D   Y 
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA-GRTAYFTINGVSTADSGKYG 190

Query: 180 VKAVNTFGRAECRANL 195
           +   N +G       +
Sbjct: 191 LVVKNKYGSETSDFTV 206

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  137 bits (346), Expect = 2e-37
 Identities = 38/254 (14%), Positives = 65/254 (25%), Gaps = 60/254 (23%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
                A  + +    E     S          V        V WSH+G+ ++    V   
Sbjct: 3   SIALSATDLKIQSTAEGIQLYS---------FVTYYVEDLKVNWSHNGSAIRYSDRVKTG 53

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE--------------- 402
                   L I+E  P + G Y     +          L+ +  +               
Sbjct: 54  VT-GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA 112

Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
           E   A         V  +      L   V G P P + W + ++ +   +   ++F    
Sbjct: 113 EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA-G 171

Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
                +I+  +  D   Y                                     +N  G
Sbjct: 172 RTAYFTINGVSTADSGKY---------------------------------GLVVKNKYG 198

Query: 523 SVTCTATLS-LLPE 535
           S T   T+S  +PE
Sbjct: 199 SETSDFTVSVFIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  134 bits (339), Expect = 1e-36
 Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 18/185 (9%)

Query: 236 TGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
                 +V W  NG  I   D            L I + T    GKY + + +     + 
Sbjct: 28  YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK 87

Query: 293 SGSVTITV-----AEAETVMMDVRVESHPTASFQWFIHSEPVV----------VTGKPTP 337
           +  ++        AE + +      E +             +           V G P P
Sbjct: 88  TVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP 147

Query: 338 LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLA 397
            V+W  +   + +     +  +        I+ V   ++G Y     N  G   +  T++
Sbjct: 148 EVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

Query: 398 VEEKE 402
           V   E
Sbjct: 208 VFIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  126 bits (318), Expect = 1e-33
 Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 16/188 (8%)

Query: 129 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
                   + W      I   +           +  L I+E TP D+  Y ++  +    
Sbjct: 27  TYYVEDLKVNWSHNGSAIRYSDRVKTGVTG--EQIWLQINEPTPNDKGKYVMELFDGKTG 84

Query: 189 AECRANLV----------LRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT 238
            +   +L            ++           A  +      + + +   + L     G 
Sbjct: 85  HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGD 144

Query: 239 PTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
           P PEV W KN K +   D               I   +   +GKY + V N+ G   +  
Sbjct: 145 PPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 204

Query: 295 SVTITVAE 302
           +V++ + E
Sbjct: 205 TVSVFIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 95.7 bits (238), Expect = 9e-23
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 1   MAEVLAPRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE 59
           +AE    R +  +  VV+ QE +    TC V G P P ++W K+   L  T+H  +    
Sbjct: 111 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA 170

Query: 60  S-VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
              +   I   +  D G Y     N  G  T    + V   E
Sbjct: 171 GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 63.7 bits (155), Expect = 9e-12
 Identities = 17/150 (11%), Positives = 34/150 (22%), Gaps = 47/150 (31%)

Query: 431 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
                   + W      I   +           +  L I+E TP D+  Y          
Sbjct: 27  TYYVEDLKVNWSHNGSAIRYSDRVKTGVTG--EQIWLQINEPTPNDKGKY---------- 74

Query: 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS------------LLPESEV 538
                                       +       T  LS             L ++ +
Sbjct: 75  -----------------------VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 111

Query: 539 TDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
            +   +      P+   + +G+++  T  V
Sbjct: 112 AEKNRARVLGGLPDVVTIQEGKALNLTCNV 141

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  146 bits (369), Expect = 6e-41
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 22/207 (10%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVES--VST 63
             F +    V   ++    F  + E       + +  +  E+     Y +    +  +  
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE-------------ESGEAPKFTK 110
           + +     ED G YT +  +       +  L+    +                + P F +
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 111 PLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 169
            L   +   +    LK  V   +    I WY+ + EI  D  H  +     G C L I+E
Sbjct: 123 YLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK----DGICTLLITE 177

Query: 170 ATPQDEAVYSVKAVNTFGRAECRANLV 196
            + +D  +Y V   +  G+ + R  LV
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRLKLV 204

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  136 bits (343), Expect = 3e-37
 Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 12/204 (5%)

Query: 106 PKFTKPLKPVIAEAQSPATLKA-TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
             FTK    V    +                 + +   ++EI     + M  +  TG   
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR--------VLEAPTIVR 216
           + + +   +DE  Y+ +  +          LV      + K            + P  V 
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 217 PLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKK 274
            L    V  +  V L+ +         + W+K+ +EI   +  + KD +  L+I + +KK
Sbjct: 123 YLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 181

Query: 275 TTGKYEIRVVNEAGEARTSGSVTI 298
             G YE+ + ++ G+ ++   +  
Sbjct: 182 DAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  121 bits (306), Expect = 5e-32
 Identities = 30/217 (13%), Positives = 61/217 (28%), Gaps = 53/217 (24%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTI-YQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
                    V +  +   + EG +  +      G+ ++ + ++  E+ G Y+    +   
Sbjct: 26  AEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA 85

Query: 389 EAVAAATLAVEEKE-------------ESGEAPKFTKPLKPVIAEAQSPATLKATVTG-R 434
              +   L  +  +                + P F + L   +   +    LK  V   +
Sbjct: 86  TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG-ECNVLLKCKVANIK 144

Query: 435 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD 494
               I WY+ + EI  D  H  +     G C L I+E + +D  +Y              
Sbjct: 145 KETHIVWYKDEREISVDEKHDFK----DGICTLLITEFSKKDAGIY-------------- 186

Query: 495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                                  ++  G       L 
Sbjct: 187 -------------------EVILKDDRGKDKSRLKLV 204

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  119 bits (299), Expect = 4e-31
 Identities = 29/207 (14%), Positives = 69/207 (33%), Gaps = 22/207 (10%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAE-YTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTK 265
               +   A+ + +   V    +    +   +V +  N KEI         I+    + +
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH 325
           + +++   +  G Y  ++ +      ++  +   V +      + + +         F+ 
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 326 SEPVVVT-------------GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF 372
                VT              K    + W  D   +   ++   +   DG+C L I+E  
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK---HDFKDGICTLLITEFS 179

Query: 373 PENAGLYSCTAVNPVGEAVAAATLAVE 399
            ++AG+Y     +  G+  +   L  E
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 86.5 bits (214), Expect = 1e-19
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTM-TWQKDGTELHATEHYLITTVESVSTL 64
            P F+E +   V+  E   L  CKV      T   W KD  E+   E +       + TL
Sbjct: 117 GPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD--GICTL 173

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
            I   +K+D G+Y     +  G       L+ 
Sbjct: 174 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 72.7 bits (178), Expect = 8e-15
 Identities = 24/172 (13%), Positives = 47/172 (27%), Gaps = 45/172 (26%)

Query: 408 PKFTKPLKPVIAEAQSPATLKA-TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
             FTK    V    +                 + +   ++EI     + M  +  TG   
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
           + + +   +DE  Y                                 T + ++   +   
Sbjct: 63  MFMEKLQDEDEGTY---------------------------------TFQLQDGKATNHS 89

Query: 527 TATL------SLLPESEVTD----VMESPRFIKTPETAKVMDGQSVLFTAQV 568
           T  L       L  E+E         + P F++   + +V    +VL   +V
Sbjct: 90  TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLLKCKV 140

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  145 bits (367), Expect = 9e-41
 Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 13/189 (6%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           AP     ++ V +  E+ A F C VE +P P ++W ++   +   +    +  E+   L 
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR-YSIRENGQLLT 65

Query: 66  IINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
           I++    D G+Y C A N +GG       L V  K      PK T+P   V       A 
Sbjct: 66  ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK------PKITRPPINVKIIEGLKAV 119

Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
           L  T  G P PS+ W +G   +  ++   +  + +     L I     +D   Y   A N
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS-----LRIHNVQKEDAGQYRCVAKN 174

Query: 185 TFGRAECRA 193
           + G A  + 
Sbjct: 175 SLGTAYSKL 183

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  131 bits (332), Expect = 9e-36
 Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 18/200 (9%)

Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNV 263
            ++ +AP I  PL+ +    +   T        P PE+ W +N   I   D     ++N 
Sbjct: 2   EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61

Query: 264 TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTASF 320
             L I        G Y     N  G A  S    + V          ++V++     A  
Sbjct: 62  QLLTILSVEDSDDGIYCCTANNGVGGAVES-CGALQVKMKPKITRPPINVKIIEGLKAVL 120

Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
                       G P P V+W    + ++E   + + +       L I  V  E+AG Y 
Sbjct: 121 P-------CTTMGNPKPSVSWIKGDSALRENSRIAVLESGS----LRIHNVQKEDAGQYR 169

Query: 381 CTAVNPVGEAVAA-ATLAVE 399
           C A N +G A +    L VE
Sbjct: 170 CVAKNSLGTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  119 bits (300), Expect = 2e-31
 Identities = 49/202 (24%), Positives = 71/202 (35%), Gaps = 16/202 (7%)

Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
           E+  +AP  T PL+ V A  +  AT    V   P P I W R K  I   +         
Sbjct: 2   EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR-YSIREN 60

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
               +L+I      D+ +Y   A N  G A      +          +V   P I RP  
Sbjct: 61  GQ--LLTILSVEDSDDGIYCCTANNGVGGAVESCGAL----------QVKMKPKITRPPI 108

Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGK 278
            + + +     L     G P P V W K    +     I   ++ + L I    K+  G+
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS-LRIHNVQKEDAGQ 167

Query: 279 YEIRVVNEAGEARTSGSVTITV 300
           Y     N  G A +   V + V
Sbjct: 168 YRCVAKNSLGTAYSK-LVKLEV 188

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  111 bits (279), Expect = 2e-28
 Identities = 44/201 (21%), Positives = 67/201 (33%), Gaps = 47/201 (23%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
            V   P P ++W+ +   +K        ++   L  L I  V   + G+Y CTA N VG 
Sbjct: 30  AVESYPQPEISWTRNKILIKLFDTRYSIRENGQL--LTILSVEDSDDGIYCCTANNGVGG 87

Query: 390 AV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI 448
           AV +   L V+ K      PK T+P   V       A L  T  G P PS+ W +G   +
Sbjct: 88  AVESCGALQVKMK------PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141

Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
             ++   +  + +     L I     +D   Y                            
Sbjct: 142 RENSRIAVLESGS-----LRIHNVQKEDAGQY---------------------------- 168

Query: 509 QIGDVTCRAENVAGSVTCTAT 529
                 C A+N  G+      
Sbjct: 169 -----RCVAKNSLGTAYSKLV 184

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 33/168 (19%), Positives = 49/168 (29%), Gaps = 46/168 (27%)

Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
           E+  +AP  T PL+ V A  +  AT    V   P P I W R K  I   +         
Sbjct: 2   EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR-YSIREN 60

Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
               +L+I      D+ +Y                                  C A N  
Sbjct: 61  GQ--LLTILSVEDSDDGIY---------------------------------CCTANNGV 85

Query: 522 G-SVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
           G +V     L          V   P+  + P   K+++G   +     
Sbjct: 86  GGAVESCGALQ---------VKMKPKITRPPINVKIIEGLKAVLPCTT 124

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  142 bits (360), Expect = 4e-39
 Identities = 46/245 (18%), Positives = 75/245 (30%), Gaps = 31/245 (12%)

Query: 3   EVLAPRFI--EKIQP--VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV 58
           +  AP +   E++    +         F C   G+P P+++W K+G E           +
Sbjct: 8   DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL 67

Query: 59  E-SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIA 117
                +L + +    D G YTC   N  G    +  L VLE+                 A
Sbjct: 68  RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-RPILQAGLPANQTA 126

Query: 118 EAQSPATLKATVTGRPTPSICWYRGKE----EILPDNGHTMEFNPT------TGECVLSI 167
              S       V     P I W +  E    ++ PD    +    +        +  L +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186

Query: 168 SEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDS 227
           +  + +D   Y  +A N  G AE    L            V             LV  D 
Sbjct: 187 ANVSERDGGEYLCRATNFIGVAEKAFWL-----------SVHGPRAAEEE----LVEADE 231

Query: 228 TVTLE 232
             ++ 
Sbjct: 232 AGSVH 236

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  121 bits (306), Expect = 1e-31
 Identities = 54/234 (23%), Positives = 78/234 (33%), Gaps = 40/234 (17%)

Query: 210 EAPTIVRPL----QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIETKD 261
            AP   RP     + L VP  +TV       G PTP + W KNG+E         I+ + 
Sbjct: 10  GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69

Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------------TVAEA 303
               LV++       G Y   V N+ G  R + ++ +                  T    
Sbjct: 70  QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 129

Query: 304 ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGL 363
             V    +V S      QW  H E       P        DGTP     +  I +  +  
Sbjct: 130 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP--------DGTPYVTVLKSWISESVEAD 181

Query: 364 CKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPV 417
            +L ++ V   + G Y C A N +G A  A  L+V             + L   
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH------GPRAAEEELVEA 229

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  118 bits (296), Expect = 2e-30
 Identities = 43/265 (16%), Positives = 68/265 (25%), Gaps = 62/265 (23%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
            + V +  T  F+           G PTP ++W  +G   +    +   +       L +
Sbjct: 24  LLAVPAANTVRFR-------CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVM 76

Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK 428
             V P + G Y+C   N  G      TL V E+                 A   S     
Sbjct: 77  ESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-RPILQAGLPANQTAVLGSDVEFH 135

Query: 429 ATVTGRPTPSICWYRGKE----EILPDNGHTMEFNPT------TGECVLSISEATPQDEA 478
             V     P I W +  E    ++ PD    +    +        +  L ++  + +D  
Sbjct: 136 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGG 195

Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEV 538
            Y                                  CRA N  G       L        
Sbjct: 196 EY---------------------------------LCRATNFIGVAEKAFWL-------- 214

Query: 539 TDVMESPRFIKTPETAKVMDGQSVL 563
             V          E  +  +  SV 
Sbjct: 215 -SVHGPRAA--EEELVEADEAGSVH 236

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  110 bits (275), Expect = 2e-27
 Identities = 40/230 (17%), Positives = 72/230 (31%), Gaps = 26/230 (11%)

Query: 104 EAPKFTKPL----KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
            AP +T+P     K +   A +    +    G PTPSI W +   E   ++         
Sbjct: 10  GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
                L +    P D   Y+    N FG       L +    +  +P             
Sbjct: 70  QQ-WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV-LERSPHRP-----ILQAGLPA 122

Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK---------------DIETKDNVT 264
                  S V    +      P ++W K+ +   SK                 E+ +   
Sbjct: 123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADV 182

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVES 314
           +L +   +++  G+Y  R  N  G A  +  +++    A    +    E+
Sbjct: 183 RLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEA 232

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 78.1 bits (192), Expect = 2e-16
 Identities = 34/167 (20%), Positives = 47/167 (28%), Gaps = 42/167 (25%)

Query: 406 EAPKFTKPL----KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
            AP +T+P     K +   A +    +    G PTPSI W +   E   ++         
Sbjct: 10  GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69

Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
                L +    P D   Y                                 TC  EN  
Sbjct: 70  QQ-WSLVMESVVPSDRGNY---------------------------------TCVVENKF 95

Query: 522 GSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
           GS+  T TL +L  S              P     + G  V F  +V
Sbjct: 96  GSIRQTYTLDVLERSPHR----PILQAGLPANQTAVLGSDVEFHCKV 138

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  142 bits (359), Expect = 4e-39
 Identities = 45/204 (22%), Positives = 68/204 (33%), Gaps = 15/204 (7%)

Query: 6   APRFI--EKIQP--VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES- 60
           AP +   EK++             F C   G+P+PTM W K+G E           V + 
Sbjct: 15  APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74

Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
             +L + +    D G YTC   N  G    + +L V+E+                     
Sbjct: 75  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH-RPILQAGLPANASTVVG 133

Query: 121 SPATLKATVTGRPTPSICWYRGKEE----ILPDNGHTMEFNP-----TTGECVLSISEAT 171
                   V     P I W +  E+      PD    ++        ++   VL++   T
Sbjct: 134 GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 193

Query: 172 PQDEAVYSVKAVNTFGRAECRANL 195
             D   Y  K  N  G+A   A L
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWL 217

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  122 bits (307), Expect = 6e-32
 Identities = 40/265 (15%), Positives = 67/265 (25%), Gaps = 38/265 (14%)

Query: 285 NEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD 344
           +   E   +          +       V +  T  F+           G P P + W  +
Sbjct: 4   DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFR-------CPAGGNPMPTMRWLKN 56

Query: 345 GTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
           G   K+   +  Y+  +    L +  V P + G Y+C   N  G       L V E+   
Sbjct: 57  GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH 116

Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
                                     V     P I W +  E+                 
Sbjct: 117 -RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN---------------- 159

Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
                     +            +   +   N  VL +  +T    G+  C+  N  G  
Sbjct: 160 --------GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211

Query: 525 TCTATLSLLPESEVTDVMESPRFIK 549
             +A L       V    ++P   K
Sbjct: 212 NQSAWL------TVLPKQQAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  119 bits (300), Expect = 5e-31
 Identities = 48/229 (20%), Positives = 76/229 (33%), Gaps = 35/229 (15%)

Query: 207 RVLEAPTIVRPL----QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIE 258
               AP          +   VP  +TV       G P P ++W KNGKE          +
Sbjct: 11  NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70

Query: 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI------------------TV 300
            ++    L+++       G Y   V NE G    +  + +                  + 
Sbjct: 71  VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAST 130

Query: 301 AEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT 360
                V    +V S      QW  H E       P        DG P  +  + +    +
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGP--------DGLPYLKVLKHSGINSS 182

Query: 361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPK 409
           +    LA+  V   +AG Y C   N +G+A  +A L V  K+++    K
Sbjct: 183 NA-EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  115 bits (289), Expect = 2e-29
 Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 25/229 (10%)

Query: 92  ANLIVLEKEESGEAPKFTKPLKP----VIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 147
           A   V E   +  AP +T   K         A +    +    G P P++ W +  +E  
Sbjct: 2   AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61

Query: 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
            ++     +        L +    P D+  Y+    N +G      +L       + +  
Sbjct: 62  QEHRIGG-YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL------DVVERS 114

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK------------ 255
                                V    +      P ++W K+ ++  SK            
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174

Query: 256 --DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
                   N   L +   T+   G+Y  +V N  G+A  S  +T+   +
Sbjct: 175 KHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 32/179 (17%), Positives = 50/179 (27%), Gaps = 42/179 (23%)

Query: 394 ATLAVEEKEESGEAPKFTKPLKP----VIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 449
           A   V E   +  AP +T   K         A +    +    G P P++ W +  +E  
Sbjct: 2   AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61

Query: 450 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ 509
            ++     +        L +    P D+  Y                             
Sbjct: 62  QEHRIGG-YKVRNQHWSLIMESVVPSDKGNY----------------------------- 91

Query: 510 IGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
               TC  EN  GS+  T  L ++  S              P  A  + G  V F  +V
Sbjct: 92  ----TCVVENEYGSINHTYHLDVVERSRHR----PILQAGLPANASTVVGGDVEFVCKV 142

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 27/112 (24%), Positives = 37/112 (33%), Gaps = 11/112 (9%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-----------DGTELHATEHYLI 55
                      +       F CKV     P + W K           DG        +  
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178

Query: 56  TTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPK 107
               +   L + N T+ D G Y CK +N  G A  SA L VL K+++    K
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  142 bits (358), Expect = 3e-38
 Identities = 43/303 (14%), Positives = 77/303 (25%), Gaps = 31/303 (10%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           AP        +V    +     C   G    ++ W    +     +          STL 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDP-----ESPGSTLT 54

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
             N T ++ G Y C         + + +L V +      A  +    + V       A L
Sbjct: 55  TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDP-----AHSWNLLAQEVTVVEGQEAVL 109

Query: 126 KATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
              +T      S+   R     +                   I +A   D   Y  K + 
Sbjct: 110 PCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG----FIIRKAKVLDSNTYVCKTMV 165

Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
             GR      + L+           E P I      L+  +     +    T        
Sbjct: 166 N-GRESTSTGIWLK-----VNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNV 219

Query: 245 WFKNGKEIVSKDIETKDNVTK------LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
             K G   +   + +            L +     +  G Y     N+ G    + +  +
Sbjct: 220 ILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279

Query: 299 TVA 301
             +
Sbjct: 280 VES 282

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  120 bits (303), Expect = 8e-31
 Identities = 60/342 (17%), Positives = 96/342 (28%), Gaps = 69/342 (20%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
           AP I      L+V    TVTL     G+    V+W        + D E+  +   L  + 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPGST--LTTRN 57

Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV----MMDVRVESHPTASFQWFIHS 326
            T K TG Y    + +     T+  + + V +          +V V     A        
Sbjct: 58  ATFKNTGTYRCTELEDPMAGSTT--IHLYVKDPAHSWNLLAQEVTVVEGQEAVL------ 109

Query: 327 EPVVVTGK-PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA-V 384
            P ++T       V+   +G      K V  +    G     I +    ++  Y C   V
Sbjct: 110 -PCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGF---IIRKAKVLDSNTYVCKTMV 165

Query: 385 NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY-R 443
           N          L V       E P+       ++      A +  + T           R
Sbjct: 166 NGRESTSTGIWLKVNRVH--PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKR 223

Query: 444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLIS 503
           G  ++        + N       LS++    QD  +Y                       
Sbjct: 224 GDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY----------------------- 260

Query: 504 KITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545
                     +C A N  G+ T T             V+ES 
Sbjct: 261 ----------SCVASNDVGTRTATMNFQ---------VVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  114 bits (286), Expect = 2e-28
 Identities = 49/306 (16%), Positives = 87/306 (28%), Gaps = 36/306 (11%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
           AP        ++ E     TL+    G    S+ W                 +P +    
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDG-------PISPYWTLDPESPGST 52

Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLV 223
           L+   AT ++   Y    +          +L            V +         Q + V
Sbjct: 53  LTTRNATFKNTGTYRCTELEDPMAGSTTIHL-----------YVKDPAHSWNLLAQEVTV 101

Query: 224 PKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEI 281
            +     L    T       V   + G   V +  +         +I++     +  Y  
Sbjct: 102 VEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVC 161

Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTGKPTP 337
           + +    E  TS  + + V         +++E       +     E        T     
Sbjct: 162 KTMVNGRE-STSTGIWLKVNRVHPEPPQIKLEPSKLVRIR----GEAAQIVCSATNAEVG 216

Query: 338 LVTWSHDGTPMKEGKEVTIYQD--TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAAT 395
                  G    E    + +QD     +  L+++ V  ++AG+YSC A N VG   A   
Sbjct: 217 FNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMN 276

Query: 396 LAVEEK 401
             V E 
Sbjct: 277 FQVVES 282

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 80.0 bits (197), Expect = 1e-16
 Identities = 36/252 (14%), Positives = 58/252 (23%), Gaps = 62/252 (24%)

Query: 326 SEPVVVTGKPTPL-------VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
            E VV  G+   L       V W    +P       T+  ++ G   L       +N G 
Sbjct: 12  PELVVEPGETVTLRCVSNGSVEWDGPISPY-----WTLDPESPG-STLTTRNATFKNTGT 65

Query: 379 YSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP 437
           Y CT +           L V++      A  +    + V       A L   +T      
Sbjct: 66  YRCTELEDPMAGSTTIHLYVKDP-----AHSWNLLAQEVTVVEGQEAVLPCLITDPALKD 120

Query: 438 SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497
           S+   R     +                   I +A   D   Y                 
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWRG----FIIRKAKVLDSNTY----------------- 159

Query: 498 SVLLISKITRDQIGDVTCRAEN-VAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKV 556
                            C+       S +    L +          E P+    P     
Sbjct: 160 ----------------VCKTMVNGRESTSTGIWLKVNRV-----HPEPPQIKLEPSKLVR 198

Query: 557 MDGQSVLFTAQV 568
           + G++       
Sbjct: 199 IRGEAAQIVCSA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  134 bits (339), Expect = 1e-36
 Identities = 51/225 (22%), Positives = 80/225 (35%), Gaps = 31/225 (13%)

Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS-- 62
             PR +E    ++  + +PA   CK EG P PT+ W K G  +   +    +    +   
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67

Query: 63  TLEIIN-----PTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVI 116
           +L  +       ++ D GVY C A N +G   +  A+L V     +     F +    V+
Sbjct: 68  SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV-----AILRDDFRQNPSDVM 122

Query: 117 AEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
                PA ++     G P P+I W +    +   +        T     L I+     D 
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI-----TIRGGKLMITYTRKSDA 177

Query: 176 AVYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQ 219
             Y     N  G  E   A L            VLE P+ V+   
Sbjct: 178 GKYVCVGTNMVGERESEVAELT-----------VLERPSFVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  103 bits (258), Expect = 2e-25
 Identities = 55/218 (25%), Positives = 83/218 (38%), Gaps = 32/218 (14%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN-------- 262
            P IV     L+V K    TL  +  G PTP ++W+K G+ + +   + + +        
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 263 --VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA----ETVMMDVRVESHP 316
               ++V  + ++   G Y     N  GEA  S   ++ VA           DV V    
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAV-SHDASLEVAILRDDFRQNPSDVMVAVGE 127

Query: 317 TASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
            A        E     G P P ++W  DG+P+ +  E    +       L I+     +A
Sbjct: 128 PAVM------ECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK----LMITYTRKSDA 177

Query: 377 GLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTKP 413
           G Y C   N VGE  +  A L V E+      P F K 
Sbjct: 178 GKYVCVGTNMVGERESEVAELTVLER------PSFVKA 209

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  102 bits (256), Expect = 4e-25
 Identities = 44/231 (19%), Positives = 71/231 (30%), Gaps = 61/231 (26%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVT---IYQDTDG---LCKLAISEVFPENAGLYSCTAV 384
             G+PTP + W   G  ++  K+           G     ++        + G+Y C A 
Sbjct: 33  AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVAR 92

Query: 385 NPVGEAVAA-ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWY 442
           N +GEAV+  A+L V     +     F +    V+     PA ++     G P P+I W 
Sbjct: 93  NYLGEAVSHDASLEV-----AILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWK 147

Query: 443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
           +    +   +        T     L I+     D   Y                      
Sbjct: 148 KDGSPLDDKDERI-----TIRGGKLMITYTRKSDAGKY---------------------- 180

Query: 503 SKITRDQIGDVTCRAENVAGSV-TCTATLSLLPESEVTDVMESPRFIKTPE 552
                       C   N+ G   +  A L+         V+E P F+K   
Sbjct: 181 -----------VCVGTNMVGERESEVAELT---------VLERPSFVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 99.9 bits (249), Expect = 3e-24
 Identities = 54/205 (26%), Positives = 72/205 (35%), Gaps = 16/205 (7%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
            P+  +    +I     PATL     GRPTP+I WY+G E +  D               
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 165 LSIS-----EATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
           L          +  DE VY   A N  G A    +  L  A               +   
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH-DASLEVAI--------LRDDFRQNPS 119

Query: 220 ALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGK 278
            ++V       +E +   G P P + W K+G  +  KD        KL+I  T K   GK
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGK 179

Query: 279 YEIRVVNEAGEARTSGSVTITVAEA 303
           Y     N  GE R S    +TV E 
Sbjct: 180 YVCVGTNMVGE-RESEVAELTVLER 203

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 85.6 bits (212), Expect = 3e-19
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
           +L   F +    V+    +PA+  C+   GHP PT++W+KDG+ L   +  +        
Sbjct: 109 ILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI---RGG 165

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKP 111
            L I    K D G Y C  TN+ G   +  A L VLE+      P F K 
Sbjct: 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER------PSFVKA 209

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 64.1 bits (156), Expect = 6e-12
 Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 42/176 (23%)

Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG 453
            +L  E+       P+  +    +I     PATL     GRPTP+I WY+G E +  D  
Sbjct: 1   GSLRQED-----FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKD 55

Query: 454 HTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDV 513
                        L                                ++  + +R   G  
Sbjct: 56  DPRSHRMLLPSGSLFFLR----------------------------IVHGRKSRPDEGVY 87

Query: 514 TCRAENVAG-SVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
            C A N  G +V+  A+L +         +    F + P    V  G+  +   Q 
Sbjct: 88  VCVARNYLGEAVSHDASLEVA--------ILRDDFRQNPSDVMVAVGEPAVMECQP 135

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  133 bits (337), Expect = 2e-36
 Identities = 39/196 (19%), Positives = 59/196 (30%), Gaps = 18/196 (9%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMT--WQKDGTELHATEHYLITTVESVST 63
            PR +   + ++     P    C +       M   W K+G EL AT         S   
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNME 57

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
             I  P  ED G Y C    +      +A + V        AP  T   +         A
Sbjct: 58  YRINKPRAEDSGEYHCVYHFVSA-PKANATIEVKA------APDITGHKRSENKNEGQDA 110

Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHT---MEFNPTTGECVLSISE-ATPQDEAVYS 179
            +     G P P   W + +  +  +  ++              L+I      +D   Y 
Sbjct: 111 MMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYE 170

Query: 180 VKAVNTFGRAECRANL 195
             A N+ G A     L
Sbjct: 171 CNATNSIGSASVSTVL 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  109 bits (273), Expect = 9e-28
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 18/196 (9%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETKDNVTKLVI 268
            P IV   + ++      VTL+   T +    +   W KNG E+         +  +  I
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVEL--TATRKNASNMEYRI 60

Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA-EAETVMMDVRVESHPTASFQWFIHSE 327
            +   + +G+Y   V +     + + ++ +  A +               A         
Sbjct: 61  NKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMM------- 112

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ----DTDGLCKLAISEV-FPENAGLYSCT 382
                G P P   W      + E    +  +    + +   +L I  +   E+ G Y C 
Sbjct: 113 YCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECN 172

Query: 383 AVNPVGEAVAAATLAV 398
           A N +G A  +  L V
Sbjct: 173 ATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  106 bits (266), Expect = 8e-27
 Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 30/207 (14%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGE 162
            P+     + +I ++  P TL+  +T          W +   E+     +          
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-------SN 55

Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
               I++   +D   Y     +     +  A +            V  AP I    ++  
Sbjct: 56  MEYRINKPRAEDSGEYHCVY-HFVSAPKANATIE-----------VKAAPDITGHKRSEN 103

Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--------IETKDNVTKLVIKQTTKK 274
             +     +  +  G P PE  W K    +  +         I  K+N T+L I      
Sbjct: 104 KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT 163

Query: 275 T-TGKYEIRVVNEAGEARTSGSVTITV 300
              G+YE    N  G A  S  + + V
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLRVRV 190

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  103 bits (257), Expect = 1e-25
 Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 53/226 (23%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVT--WSHDGTPMKEGKEVTIYQDTDGLCKL 366
            +  +S    + Q         +T     L+   W+ +G  +   ++           + 
Sbjct: 12  VIIRDSLLPVTLQ-------CNLTSSSHTLMYSYWTKNGVELTATRKN------ASNMEY 58

Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPAT 426
            I++   E++G Y C   + V    A AT+ V+       AP  T   +         A 
Sbjct: 59  RINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA------APDITGHKRSENKNEGQDAM 111

Query: 427 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
           +     G P P   W + +  +  +  +                              SS
Sbjct: 112 MYCKSVGYPHPEWMWRKKENGVFEEISN------------------------------SS 141

Query: 487 TETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSVTCTATLS 531
               I+   N + L I  +   +  G+  C A N  GS + +  L 
Sbjct: 142 GRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 86.8 bits (215), Expect = 6e-20
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL-----HATEHYLITTVES 60
           AP      +    ++ Q A+  CK  G+P P   W+K    +     +++  + I   E+
Sbjct: 92  APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151

Query: 61  VSTLEIINP-TKEDIGVYTCKATNIGGVATCSANLIV 96
            + L I+N    ED G Y C ATN  G A+ S  L V
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 18/164 (10%), Positives = 39/164 (23%), Gaps = 52/164 (31%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGE 464
            P+     + +I ++  P TL+  +T          W +   E+     +          
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-------ASN 55

Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
               I++   +D   Y                                  C   +   + 
Sbjct: 56  MEYRINKPRAEDSGEY---------------------------------HCVY-HFVSAP 81

Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
              AT+          V  +P       +    +GQ  +   + 
Sbjct: 82  KANATIE---------VKAAPDITGHKRSENKNEGQDAMMYCKS 116

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  131 bits (331), Expect = 8e-36
 Identities = 40/195 (20%), Positives = 66/195 (33%), Gaps = 21/195 (10%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVST 63
             + +     +   Q QP    C VEG   P + W KDG  +   +  +  ++    +  
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 64  LEIINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
           L + +  + D G Y C+  +      +    L V         P FT   K +     +P
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE------GVPFFTVEPKDLAVPPNAP 115

Query: 123 ATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
             L     G P P +I W+RG  +I                    ++        ++S +
Sbjct: 116 FQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP-----------SVLNVTGVTQSTMFSCE 164

Query: 182 AVNTFGRAECRANLV 196
           A N  G A  R   V
Sbjct: 165 AHNLKGLASSRTATV 179

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  109 bits (275), Expect = 5e-28
 Identities = 32/198 (16%), Positives = 57/198 (28%), Gaps = 20/198 (10%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
             K       +      P  L  +V G   P I W +    +   +   +  +       
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
           LS+      D   Y  +  +       +   L            V   P      + L V
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLT-----------VEGVPFFTVEPKDLAV 110

Query: 224 PKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIR 282
           P ++   L  E  G P P  + W++   +I              V+  T    +  +   
Sbjct: 111 PPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP------SVLNVTGVTQSTMFSCE 164

Query: 283 VVNEAGEARTSGSVTITV 300
             N  G A +S + T+ +
Sbjct: 165 AHNLKGLA-SSRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  100 bits (250), Expect = 1e-24
 Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 28/199 (14%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTK 265
              ++     L V +   V L     G   P+++W K+G  + + D     +  +  +  
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTASFQW 322
           L +K   +   G+Y  +V +       S  V +TV           D+ V  +       
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETE-ISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS- 119

Query: 323 FIHSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
                     G P P+ + W    T +                   ++      + ++SC
Sbjct: 120 ------CEAVGPPEPVTIVWWRGTTKI----------GGPAPSPSVLNVTGVTQSTMFSC 163

Query: 382 TAVNPVGEAVA-AATLAVE 399
            A N  G A +  AT+ ++
Sbjct: 164 EAHNLKGLASSRTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 94.1 bits (234), Expect = 1e-22
 Identities = 33/182 (18%), Positives = 57/182 (31%), Gaps = 27/182 (14%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI-YQDTDGLCKLA 367
            + V                  V G   P + W  DG  ++   ++ I   +   +  L+
Sbjct: 11  KLTVSQGQPVKL-------NCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63

Query: 368 ISEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPAT 426
           +  V   +AG Y C   +     +     L VE        P FT   K +     +P  
Sbjct: 64  LKSVERSDAGRYWCQVEDGGETEISQPVWLTVE------GVPFFTVEPKDLAVPPNAPFQ 117

Query: 427 LKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485
           L     G P P +I W+RG  +I                    ++        ++S +A 
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGPAPSP-----------SVLNVTGVTQSTMFSCEAH 166

Query: 486 ST 487
           + 
Sbjct: 167 NL 168

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 76.0 bits (187), Expect = 4e-16
 Identities = 20/163 (12%), Positives = 37/163 (22%), Gaps = 43/163 (26%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
             K       +      P  L  +V G   P I W +    +   +   +  +       
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-VT 525
           LS+      D   Y                                  C+ E+   + ++
Sbjct: 62  LSLKSVERSDAGRY---------------------------------WCQVEDGGETEIS 88

Query: 526 CTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
               L+         V   P F   P+   V        + + 
Sbjct: 89  QPVWLT---------VEGVPFFTVEPKDLAVPPNAPFQLSCEA 122

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTL 64
            P F  + + +      P   +C+  G P P T+ W +  T++            S S L
Sbjct: 98  VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------PSPSVL 150

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
            +         +++C+A N+ G+A+     + L+
Sbjct: 151 NVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ 182

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  131 bits (331), Expect = 2e-35
 Identities = 49/208 (23%), Positives = 74/208 (35%), Gaps = 15/208 (7%)

Query: 1   MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA----TEHYLIT 56
             +  +PR IE    +V  + +PA   CKVEG P PT+ W KDG  +      +      
Sbjct: 4   AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63

Query: 57  TVESVSTLEIINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPV 115
                    +    ++D G Y C A N +G   +  A+L +           F    K  
Sbjct: 64  DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV-----LRDDFRVEPKDT 118

Query: 116 IAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNP---TTGECVLSISEAT 171
                  A L+     G P P++ W +    +      +   +          L IS   
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178

Query: 172 PQDEAVYSVKAVNTFGRAE-CRANLVLR 198
           P DE  Y   A N  G  E   A L+++
Sbjct: 179 PIDEGNYKCIAQNLVGTRESSYAKLIVQ 206

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  108 bits (272), Expect = 3e-27
 Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 27/218 (12%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT----- 264
           ++P I+     L+V K+   TL  +  G P P ++WFK+G+ + + + ++          
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67

Query: 265 --KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA----ETVMMDVRVESHPTA 318
                ++   ++  G+Y     N  G+A  S   ++ +A           D RV    TA
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAV-SRHASLQIAVLRDDFRVEPKDTRVAKGETA 126

Query: 319 SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT------DGLCKLAISEVF 372
                   E     G P P + W  DG P+ + K ++    +       G   L IS V 
Sbjct: 127 LL------ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG--NLLISNVE 178

Query: 373 PENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPK 409
           P + G Y C A N VG   ++ A L V+ K  +     
Sbjct: 179 PIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  101 bits (252), Expect = 1e-24
 Identities = 46/252 (18%), Positives = 73/252 (28%), Gaps = 63/252 (25%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG---KEVTIYQDTDGLCK 365
           D+ V+ +  A+           V GKP P + W  DG P+           ++D      
Sbjct: 18  DLVVKKNEPATL-------NCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFY 70

Query: 366 LAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTKPLKPVIAEAQSP 424
             +     ++ G Y C A N VG+AV+  A+L +     +     F    K         
Sbjct: 71  RTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI-----AVLRDDFRVEPKDTRVAKGET 125

Query: 425 ATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNP---TTGECVLSISEATPQDEAVY 480
           A L+     G P P++ W +    +      +   +          L IS   P DE  Y
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185

Query: 481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLLPESEVT 539
                                             C A+N+ G+  +  A L         
Sbjct: 186 ---------------------------------KCIAQNLVGTRESSYAKLI-------- 204

Query: 540 DVMESPRFIKTP 551
            V          
Sbjct: 205 -VQVKAAAHHHH 215

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 49/175 (28%)

Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG 453
           A LA +      ++P+  +    ++ +   PATL   V G+P P+I W++  E +  +  
Sbjct: 1   APLAGQY-----QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK 55

Query: 454 HTMEFNPTTGECVLS--ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG 511
            +       G       +     QD   Y                               
Sbjct: 56  KSHRVQFKDGALFFYRTMQGKKEQDGGEY------------------------------- 84

Query: 512 DVTCRAENVAGS-VTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
              C A+N  G  V+  A+L +              F   P+  +V  G++ L  
Sbjct: 85  --WCVAKNRVGQAVSRHASLQIAV--------LRDDFRVEPKDTRVAKGETALLE 129

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  129 bits (326), Expect = 1e-34
 Identities = 30/219 (13%), Positives = 58/219 (26%), Gaps = 31/219 (14%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
             +     +       Q     C+  GHP     W K   E+              S L 
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT---------SELI 68

Query: 66  IINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGE---------APKFTKPLKPV 115
                 +D G Y C+  N      +  + L V +  ES +           +        
Sbjct: 69  FNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQ 128

Query: 116 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
                S   L+    G P P   W++ +  +  +              +  +     + +
Sbjct: 129 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK-----------LYMVPYVDLEHQ 177

Query: 176 AVYSVKAVNTFGRAECRA-NLVLRKATTIDKPRVLEAPT 213
             Y     N     + +   +++ +   +  P   E  T
Sbjct: 178 GTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  113 bits (283), Expect = 8e-29
 Identities = 36/208 (17%), Positives = 61/208 (29%), Gaps = 23/208 (11%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
              K T   +     A     L    TG P     W++  +EI   N             
Sbjct: 17  RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE---------- 66

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECR-ANL----VLRKATTIDKPRVLEAPTIVRPL 218
            L  +    +D   Y  +  N F     + + L    +                 I    
Sbjct: 67  -LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125

Query: 219 QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGK 278
            +  +   ST+ L+    G+P P  +WFKN   +      T +     ++     +  G 
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKLYMVPYVDLEHQGT 179

Query: 279 YEIRVVNEAGEARTSGSVTITVAEAETV 306
           Y   V N+     +   V I + E   +
Sbjct: 180 YWCHVYNDRDSQDSK-KVEIIIDELNNL 206

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  109 bits (274), Expect = 1e-27
 Identities = 44/217 (20%), Positives = 65/217 (29%), Gaps = 33/217 (15%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLV 267
           V     I    ++  V     V L    TG P  + +WFK  KEI +       N ++L+
Sbjct: 15  VPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN------GNTSELI 68

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA-ETVMMDVRVESHPTASFQWFIHS 326
                 K  G Y  RV N       S    + V +  E+    V   S           S
Sbjct: 69  FNAVHVKDAGFYVCRVNNNFTFE-FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127

Query: 327 EPV----------VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
           + +          V  G P P   W  +  P        +  +T  L    +  V  E+ 
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELP--------LTHETKKL--YMVPYVDLEHQ 177

Query: 377 GLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKP 413
           G Y C   N      +     + +     E      P
Sbjct: 178 GTYWCHVYNDRDSQDSKKVEIIID-----ELNNLGHP 209

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  105 bits (263), Expect = 4e-26
 Identities = 29/262 (11%), Positives = 55/262 (20%), Gaps = 80/262 (30%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
              V +                 TG P     W      +  G             +L  
Sbjct: 27  SKAVLAGQFVKLC-------CRATGHPFVQYQWFKMNKEIPNGNT----------SELIF 69

Query: 369 SEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGE---------APKFTKPLKPVI 418
           + V  ++AG Y C   N         + L V +  ES +           +         
Sbjct: 70  NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQK 129

Query: 419 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 478
               S   L+    G P P   W++ +  +  +              +  +     + + 
Sbjct: 130 LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK-----------LYMVPYVDLEHQG 178

Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEV 538
            Y                                  C   N   S               
Sbjct: 179 TY---------------------------------WCHVYNDRDSQDSKKVEI------- 198

Query: 539 TDVMESPRFIKTPETAKVMDGQ 560
             +++    +  P+  +    Q
Sbjct: 199 --IIDELNNLGHPDNKEQTTDQ 218

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 23/170 (13%), Positives = 38/170 (22%), Gaps = 51/170 (30%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
              K T   +     A     L    TG P     W++  +EI   N             
Sbjct: 17  RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE---------- 66

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-V 524
            L  +    +D   Y                                  CR  N      
Sbjct: 67  -LIFNAVHVKDAGFY---------------------------------VCRVNNNFTFEF 92

Query: 525 TCTATLSLLPESEVTDVMES------PRFIKTPETAKVMDGQSVLFTAQV 568
           +  + L +    E              +    P + K+M G +++     
Sbjct: 93  SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA 142

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  128 bits (323), Expect = 2e-34
 Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 12/198 (6%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKDGTELHATEHYLITTVESV 61
            L P   E+   V   + +  +  C    H     +  W  +   +  T        ++ 
Sbjct: 6   YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65

Query: 62  STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL----EKEESGEAPKFTKPLKPVIA 117
             L I N    D G Y+C  ++     +  +  I L    E+             K V A
Sbjct: 66  GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYA 125

Query: 118 EAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
                 TL+    G P P I W +  E  +P                L I     +DE +
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEP-MPSTAEISTSGAV-----LKIFNIQLEDEGI 179

Query: 178 YSVKAVNTFGRAECRANL 195
           Y  +A N  G+ + +A +
Sbjct: 180 YECEAENIRGKDKHQARI 197

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  109 bits (273), Expect = 2e-27
 Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 6/195 (3%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGEC 163
           P   +    V  +      L            S  W   +  +          + T G  
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-- 66

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
            L I+     D+  YS    +        +  +       ++        IV   + +  
Sbjct: 67  NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIP-ERTTKPYPADIVVQFKDVYA 125

Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV 283
                VTLE    G P P+++W K  + + S    +      L I     +  G YE   
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV-LKIFNIQLEDEGIYECEA 184

Query: 284 VNEAGEARTSGSVTI 298
            N  G+ +    + +
Sbjct: 185 ENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 98.8 bits (246), Expect = 6e-24
 Identities = 31/197 (15%), Positives = 54/197 (27%), Gaps = 14/197 (7%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPE--VKWFKNGKEIV---SKDIETKDNVTKL 266
           P        + V +   + L  +       +   +W  N   +     K          L
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
            I        G Y   V + +            +   E        +        + +  
Sbjct: 69  YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128

Query: 327 EPV----VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCT 382
           + V       G P P + W     PM    E++          L I  +  E+ G+Y C 
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV-----LKIFNIQLEDEGIYECE 183

Query: 383 AVNPVGEAVAAATLAVE 399
           A N  G+    A + V+
Sbjct: 184 AENIRGKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 96.9 bits (241), Expect = 2e-23
 Identities = 39/240 (16%), Positives = 61/240 (25%), Gaps = 63/240 (26%)

Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
            + V E + +++      H                         W  +  P+    +   
Sbjct: 17  EVRVKEGKGMVLLCDPPYHFP-----------------DDLSYRWLLNEFPVFITMDKRR 59

Query: 357 Y-QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV----EEKEESGEAPKFT 411
           +   T+G   L I+ V   + G YSC   +P       +         E+          
Sbjct: 60  FVSQTNG--NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV 117

Query: 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
              K V A      TL+    G P P I W +  E  +P                L I  
Sbjct: 118 VQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP-MPSTAEISTSGAV-----LKIFN 171

Query: 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
              +DE +Y                                  C AEN+ G     A + 
Sbjct: 172 IQLEDEGIY---------------------------------ECEAENIRGKDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 85.3 bits (211), Expect = 3e-19
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
               + + + V +   Q     C   G+P+P + W+K    + +T         S + L+
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST----SGAVLK 168

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIV 96
           I N   ED G+Y C+A NI G     A + V
Sbjct: 169 IFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 54.9 bits (132), Expect = 8e-09
 Identities = 19/165 (11%), Positives = 38/165 (23%), Gaps = 38/165 (23%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGEC 465
           P   +    V  +      L            S  W   +  +          + T G  
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-- 66

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
            L I+     D+  Y                                 +C   + + + +
Sbjct: 67  NLYIANVEASDKGNY---------------------------------SCFVSSPSITKS 93

Query: 526 CTAT-LSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVG 569
             +  + L+P  E T        +   +    + GQ+V       
Sbjct: 94  VFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFAL 138

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  130 bits (327), Expect = 5e-34
 Identities = 48/301 (15%), Positives = 88/301 (29%), Gaps = 31/301 (10%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           P     +  +V          C   G    ++ W    +      H+ + +  S S L  
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSP-----HWTLYSDGSSSILST 55

Query: 67  INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLK 126
            N T ++ G Y C         + + +L V +      A  +    + V+      A L 
Sbjct: 56  NNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDP-----ARPWNVLAQEVVVFEDQDALLP 110

Query: 127 ATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185
             +T       +   R +   L  + +   F+P  G    +I  A       Y   A+  
Sbjct: 111 CLLTDPVLEAGVSLVRVRGRPLMRHTN-YSFSPWHG---FTIHRAKFIQSQDYQCSALMG 166

Query: 186 FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVK 244
            GR     ++ L+    I  P     P +      L+  +     +    +      +V 
Sbjct: 167 -GRKVMSISIRLKVQKVIPGP-----PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220

Query: 245 WFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
              N  ++               V  L + Q   +  G Y     N  G+  TS    + 
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280

Query: 300 V 300
            
Sbjct: 281 E 281

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  113 bits (283), Expect = 5e-28
 Identities = 44/346 (12%), Positives = 93/346 (26%), Gaps = 65/346 (18%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQT 271
           P I   +  L+V   +TVTL     G+    V+W        +   +   ++  L     
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSI--LSTNNA 58

Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM--DVRVESHPTASFQWFIHSEPV 329
           T + TG Y      +      +  + +        ++  +V V     A         P 
Sbjct: 59  TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALL-------PC 111

Query: 330 VVTG-KPTPLVTWSH-DGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
           ++T       V+     G P+      +            I       +  Y C+A+   
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG----FTIHRAKFIQSQDYQCSALMGG 167

Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKE 446
            + V + ++ ++ ++     P  T     ++      A +  + +        + +    
Sbjct: 168 RK-VMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNT 226

Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
           ++          N       L++ +   Q    Y                          
Sbjct: 227 KLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY-------------------------- 260

Query: 507 RDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE 552
                  +C A NV G  + +             V+ES        
Sbjct: 261 -------SCVASNVQGKHSTSMFF---------RVVESAGNSHHHH 290

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  110 bits (277), Expect = 3e-27
 Identities = 45/309 (14%), Positives = 94/309 (30%), Gaps = 36/309 (11%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           +G  P     +  ++ +  +  TL+    G    S+ W        P + H   ++  + 
Sbjct: 1   AGSIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDG------PPSPHWTLYSDGSS 50

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQA 220
             +LS + AT Q+   Y               +L            V +         Q 
Sbjct: 51  -SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY-----------VKDPARPWNVLAQE 98

Query: 221 LLVPKDSTVTLEAEYTGT-PTPEVKWFK-NGKEIVSKDIETKDNVTKLVIKQTTKKTTGK 278
           ++V +D    L    T       V   +  G+ ++     +        I +     +  
Sbjct: 99  VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQD 158

Query: 279 YEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTGK 334
           Y+   +    +   S S+ + V +       + +        +     E        +  
Sbjct: 159 YQCSALMGGRK-VMSISIRLKVQKVIPGPPALTLVPAELVRIR----GEAAQIVCSASSV 213

Query: 335 PTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCK-LAISEVFPENAGLYSCTAVNPVGEAVA 392
                V   H+ T +   ++   + +       L + +V  ++AG YSC A N  G+   
Sbjct: 214 DVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHST 273

Query: 393 AATLAVEEK 401
           +    V E 
Sbjct: 274 SMFFRVVES 282

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 79.6 bits (196), Expect = 1e-16
 Identities = 41/249 (16%), Positives = 65/249 (26%), Gaps = 62/249 (24%)

Query: 326 SEPVVVTGKPTPL-------VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
            E VV  G    L       V W    +P       T+Y D      L+ +    +N G 
Sbjct: 12  PELVVKPGATVTLRCVGNGSVEWDGPPSP-----HWTLYSDGSS-SILSTNNATFQNTGT 65

Query: 379 YSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP 437
           Y CT         AA  L V++      A  +    + V+      A L   +T      
Sbjct: 66  YRCTEPGDPLGGSAAIHLYVKDP-----ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEA 120

Query: 438 SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497
            +   R +   L  + +   F+P  G    +I  A       Y                 
Sbjct: 121 GVSLVRVRGRPLMRHTN-YSFSPWHG---FTIHRAKFIQSQDY----------------- 159

Query: 498 SVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLLPESEVTDVMESPRFIKTPETAKV 556
                            C A      V + +  L +        +   P     P     
Sbjct: 160 ----------------QCSALMGGRKVMSISIRLKVQKV-----IPGPPALTLVPAELVR 198

Query: 557 MDGQSVLFT 565
           + G++    
Sbjct: 199 IRGEAAQIV 207

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 79.2 bits (195), Expect = 2e-16
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHY--LITTVESVST 63
           P        +V  + + A   C      +   +  Q + T+L   +         + V T
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLT 246

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
           L +     +  G Y+C A+N+ G  + S    V+E 
Sbjct: 247 LNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  129 bits (326), Expect = 9e-33
 Identities = 65/521 (12%), Positives = 123/521 (23%), Gaps = 100/521 (19%)

Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
              L TC         +       E    +  L+    +    E+ N  ++      C +
Sbjct: 15  GSVLVTCSTSCDQPMLLGI-----ETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYS 67

Query: 82  TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG---RPTPSIC 138
               G +T    L V    E            P         TL+  V G   R   ++ 
Sbjct: 68  NCPDGQSTAKTFLTVYWTPER-----VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122

Query: 139 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
             RG++E+               E   ++        A +S +             L   
Sbjct: 123 LLRGEKEL-----KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQG--LELFEN 175

Query: 199 KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG---TPTPEVKWFKNGKEIVSK 255
            +        +   T  + +   ++  D+  T+     G       +V      + +   
Sbjct: 176 TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT 235

Query: 256 DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRV 312
                D+ +       T +  G   +      G        T+T+        ++    V
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 295

Query: 313 ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF 372
                 + +            +    +            +             L +    
Sbjct: 296 SEGTEVTVK-------CEAHPRAKVTLNGVPAQPLGPRAQ-------------LLLKATP 335

Query: 373 PENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKP--VIAEAQSPATLKAT 430
            +N   +SC+A   V   +       E +      P+  +   P        S  T    
Sbjct: 336 EDNGRSFSCSATLEVAGQLIHKNQTRELRVLY--GPRLDERDCPGNWTWPENSQQTPMCQ 393

Query: 431 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
             G P P +   +     LP                                        
Sbjct: 394 AWGNPLPELKCLKDGTFPLP---------------------------------------- 413

Query: 491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                   +     +TRD  G   CRA +  G VT   T++
Sbjct: 414 --------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 446

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  114 bits (287), Expect = 1e-27
 Identities = 51/412 (12%), Positives = 98/412 (23%), Gaps = 64/412 (15%)

Query: 6   APRFIE-KIQPVVSHQEQPALFTCKVEG-HPLP--TMTWQKDGTELHATEHYLITTVESV 61
            P  +E    P      +     C+VEG  P    T+   +   EL            + 
Sbjct: 85  TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA---VGEPAE 141

Query: 62  STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV---IAE 118
            T  ++         ++C+                    +         P + V   + E
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201

Query: 119 AQSPATLKATVTG---RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
             +  T+  ++ G        +    G + + P   +  +               T +DE
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA-----SVSVTAEDE 256

Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY 235
               +      G         +          +   P     L    V + + VT++ E 
Sbjct: 257 GTQRLTCAVILGNQSQETLQTVT---------IYSFPAPNVILTKPEVSEGTEVTVKCEA 307

Query: 236 TGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS 295
                  +                     +L++K T +     +      E        +
Sbjct: 308 HPRAKVTLNGVPAQPLGPR---------AQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 358

Query: 296 VTITVA-------EAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM 348
            T  +        +      +     +   +             G P P +    DGT  
Sbjct: 359 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPM-------CQAWGNPLPELKCLKDGTFP 411

Query: 349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
               E                 V  +  G Y C A +  GE     T+ V  
Sbjct: 412 LPIGESVT--------------VTRDLEGTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 86.8 bits (214), Expect = 2e-18
 Identities = 46/470 (9%), Positives = 97/470 (20%), Gaps = 100/470 (21%)

Query: 115 VIAEAQSPATLKATVTGRPTPSICW--YRGKEEILPDNGHTMEFNPTTGECVLSISEATP 172
           VI        +  + +      +       K+E+L    +   +  +             
Sbjct: 9   VILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNV----------- 57

Query: 173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR-PLQALLVPKDSTVTL 231
           Q+++     +    G++  +  L            V   P  V         P    +TL
Sbjct: 58  QEDSQPMCYSNCPDGQSTAKTFL-----------TVYWTPERVELAPLPSWQPVGKNLTL 106

Query: 232 EAEYTG---TPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288
             +  G        V   +  KE+  +    +       +          +  R   +  
Sbjct: 107 RCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLR 166

Query: 289 EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSE---PVVVTGK---PTPLVTWS 342
                     +        +         +     + ++      + G        V  +
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLA 226

Query: 343 HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLY--SCTAVNPVGEAVAAATLAVEE 400
                +      T+    D     A   V  E+ G    +C  +          T+ +  
Sbjct: 227 LGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282

Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
                  P     L        +  T+K     R   ++     +               
Sbjct: 283 ------FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPL------------- 323

Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
                                             G R+ LL+     D     +C A   
Sbjct: 324 ----------------------------------GPRAQLLLKATPEDNGRSFSCSATLE 349

Query: 521 AGSVTCTATLSLLPESEVTDVMESPRFI--KTPETAKVMDGQSVLFTAQV 568
                     +         V+  PR      P      +        Q 
Sbjct: 350 VAGQLIHKNQTR-----ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA 394

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  121 bits (306), Expect = 3e-32
 Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 14/194 (7%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTV---ESVS 62
            +             +   F C+V G      ++W     E  +     I+ V   +  S
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 63  TLEIINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
           TL I N   +D G+Y C  T   G  +  + N+ + +K        F     P   +   
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK------LMFKNAPTPQEFKEGE 116

Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
            A +   V     P+I W     +++                 L I      DE  Y  +
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCE 173

Query: 182 AVNTFGRAECRANL 195
                       ++
Sbjct: 174 GRILARGEINFKDI 187

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  109 bits (274), Expect = 7e-28
 Identities = 26/201 (12%), Positives = 50/201 (24%), Gaps = 18/201 (8%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYR-GKEEILPDNGHTMEFNPTTGEC 163
            +                     V G      I W+    E++ P+              
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 164 VLSISEATPQDEAVYSVKAVNTFG-RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
            L+I  A   D  +Y        G ++E   N+            + +            
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK-----------IFQKLMFKNAPTPQE 111

Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKY 279
             +     +  +   +  P + W   G++++ K         N   L I+   K   G Y
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTY 170

Query: 280 EIRVVNEAGEARTSGSVTITV 300
                  A        + + V
Sbjct: 171 RCEGRILARGEINFKDIQVIV 191

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  104 bits (261), Expect = 5e-26
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 26/200 (13%)

Query: 216 RPLQALLVPKDSTV------TLEAEYTGTP-TPEVKWFKNGKEIVSKD------IETKDN 262
           R LQ  +VP    +          +  G     ++ WF    E +S +      +   D+
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPTAS 319
            + L I        G Y+  V  E G  ++  +V + + +    +        +    A 
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119

Query: 320 FQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379
                      V     P + W H G  +   K+V     ++    L I  +   + G Y
Sbjct: 120 IV-------CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTY 170

Query: 380 SCTAVNPVGEAVAAATLAVE 399
            C         +    + V 
Sbjct: 171 RCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  103 bits (258), Expect = 1e-25
 Identities = 28/239 (11%), Positives = 58/239 (24%), Gaps = 63/239 (26%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSH-DGTPMKEGKE-VT 355
             ++  E+     +V                          ++W   +G  +   ++ ++
Sbjct: 12  GEISVGESKFFLCQVAGDA------------------KDKDISWFSPNGEKLSPNQQRIS 53

Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPL 414
           +  + D    L I     ++AG+Y C      G    A   + + +K        F    
Sbjct: 54  VVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK------LMFKNAP 107

Query: 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 474
            P   +    A +   V     P+I W     +++                 L I     
Sbjct: 108 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKK 164

Query: 475 QDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
            DE  Y                                  C    +A        + ++
Sbjct: 165 TDEGTY---------------------------------RCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 88.0 bits (218), Expect = 3e-20
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
              F     P    + + A+  C V     PT+ W+  G ++   +      + + + L+
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQ 158

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
           I    K D G Y C+   +        ++ V+
Sbjct: 159 IRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 18/164 (10%), Positives = 33/164 (20%), Gaps = 45/164 (27%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYR-GKEEILPDNGHTMEFNPTTGEC 465
            +                     V G      I W+    E++ P+              
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS-V 524
            L+I  A   D  +Y                                  C      G+  
Sbjct: 63  TLTIYNANIDDAGIY---------------------------------KCVVTAEDGTQS 89

Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
             T  +          + +   F   P   +  +G+  +    V
Sbjct: 90  EATVNVK---------IFQKLMFKNAPTPQEFKEGEDAVIVCDV 124

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  125 bits (314), Expect = 1e-30
 Identities = 61/490 (12%), Positives = 126/490 (25%), Gaps = 65/490 (13%)

Query: 1   MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMT--WQKDG----TELHATEHYL 54
           +     P  +   +       +     C  +          +++ G      + ++ +  
Sbjct: 107 LEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVN 166

Query: 55  ITTVESVS-----------TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
                 +            ++ I      D G Y C+A +       +A+L VL+ E   
Sbjct: 167 PNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL 226

Query: 104 EAPKFTKPLK---PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG-HTMEFNPT 159
                   +     +  E  + A      +      +      +      G   +     
Sbjct: 227 VYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDK 286

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
            G   + I+    +D   Y   A +     E              +  V E  TI R   
Sbjct: 287 DGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA-------WQLFVNEESTIPRSPT 339

Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK----EIVSKDIETKDNVTK---------- 265
            +     S+V +   Y    +  +K++   +          ++++  V            
Sbjct: 340 VVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE 399

Query: 266 --------LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPT 317
                   +++ Q T +  G Y      +     T     I       V  +V      T
Sbjct: 400 EPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGET 459

Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDG------TPMKEGKEVTIYQDTDGLCKLAISEV 371
                    +    +        W++ G            K      +   L  L ++ V
Sbjct: 460 LKVPCHFPCKF---SSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLV 516

Query: 372 FPENAGLYSCTAVN-PVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ---SPATL 427
              + G Y C           AA  +AVEE++ +G   +     K   A  +        
Sbjct: 517 TRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAG--SRDVSLAKADAAPDEKVLDSGFR 574

Query: 428 KATVTGRPTP 437
           +        P
Sbjct: 575 EIENKAIQDP 584

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  121 bits (304), Expect = 2e-29
 Identities = 60/518 (11%), Positives = 127/518 (24%), Gaps = 58/518 (11%)

Query: 15  PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH-YLIT--TVESVSTLEIINPTK 71
           P  S       + C+             +G           +T         + I   ++
Sbjct: 25  PPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ 84

Query: 72  EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG 131
           +D G Y C         +   +       E  + P      K    +     T+      
Sbjct: 85  DDSGRYKCGLGINSRGLSFDVS------LEVSQGPGLLNDTKVYTVDLGRTVTINCPFKT 138

Query: 132 RPTPS-ICWYRGKEEILPDNGHTMEF--------------NPTTGECVLSISEATPQDEA 176
                    Y+           +  +                      + I++    D  
Sbjct: 139 ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAG 198

Query: 177 VYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT 236
            Y  +A +     +  A+L + K         L          AL     +        +
Sbjct: 199 QYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHC--ALGPEVANVAKFLCRQS 256

Query: 237 GTPTPEVKWFKNGKEI------VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA 290
                +V     GK        +  + + KD    +VI    K+  G+Y     ++    
Sbjct: 257 SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ 316

Query: 291 RTSGSV-----------------TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTG 333
             S                     +      +V +        + S +++   E     G
Sbjct: 317 EGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEG-AQNG 375

Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393
           +   LV          EG+   + +  +G   + ++++   +AG Y C            
Sbjct: 376 RCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL---WR 432

Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP--- 450
            T+ ++  E              +    + P       +        W     + LP   
Sbjct: 433 TTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQD 492

Query: 451 --DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
              +   +  +  +    L+++  T  DE  Y      
Sbjct: 493 EGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQ 530

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 91.6 bits (226), Expect = 1e-19
 Identities = 53/463 (11%), Positives = 118/463 (25%), Gaps = 81/463 (17%)

Query: 113 KPVIAEAQSPATLK---ATVTGRPTPSICWYRGKEEILPD--------------NGHTME 155
           + V +   +  ++       +        W R                          + 
Sbjct: 8   EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67

Query: 156 FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV 215
             P  G  V++I++ +  D   Y           +C   +  R  +      V + P ++
Sbjct: 68  NFPENGTFVVNIAQLSQDDSGRY-----------KCGLGINSRGLSFDVSLEVSQGPGLL 116

Query: 216 RPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI------------------ 257
              +   V    TVT+   +      + K       +    +                  
Sbjct: 117 NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLD 176

Query: 258 --ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI--------TVAEAETVM 307
              T   +  +VI Q      G+Y  +  +++   + +  + +              +V 
Sbjct: 177 IQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVT 236

Query: 308 MDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE-VTIYQD-TDGLCK 365
               +        ++         +      V  +  G      +  + +     DG   
Sbjct: 237 FHCALGPEVANVAKFLCR-----QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFS 291

Query: 366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPA 425
           + I+ +  E+AG Y C A +       +   A   +    E     +    V   A S  
Sbjct: 292 VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA--WQLFVNEESTIPRSPTVVKGVAGSSV 349

Query: 426 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS 485
            +      + + SI ++   E         +         V S      Q E   S+   
Sbjct: 350 AVLCPYNRKESKSIKYWCLWEGAQNGRCPLL---------VDSEGWVKAQYEGRLSLLEE 400

Query: 486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTA 528
                         ++++++T    G   C         T   
Sbjct: 401 -------PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE 436

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 78.5 bits (192), Expect = 2e-15
 Identities = 43/379 (11%), Positives = 92/379 (24%), Gaps = 74/379 (19%)

Query: 223 VPKDSTVTLE---AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK-------------- 265
             + ++V++       +        W + G       + + +                  
Sbjct: 12  SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPE 71

Query: 266 -----LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA-EAETVMMDVRVESHPTAS 319
                + I Q ++  +G+Y+  +   +       S+ ++             V+   T +
Sbjct: 72  NGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVT 131

Query: 320 FQWFIHSEPVVV-------TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG--LCKLAISE 370
                 +E            G    LV  S           + +     G  L  + I++
Sbjct: 132 INCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191

Query: 371 VFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK---PVIAEAQSPATL 427
           +   +AG Y C A +        A L V + E           +     +  E  + A  
Sbjct: 192 LRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251

Query: 428 KATVTGRPTPSICWYRGKEEILPDNG-HTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
               +      +      +      G   +      G   + I+    +D   Y      
Sbjct: 252 LCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY------ 305

Query: 487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPR 546
                                       C A +       +        +    V E   
Sbjct: 306 ---------------------------LCGAHSDGQLQEGSPIQ-----AWQLFVNEEST 333

Query: 547 FIKTPETAKVMDGQSVLFT 565
             ++P   K + G SV   
Sbjct: 334 IPRSPTVVKGVAGSSVAVL 352

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 59.6 bits (143), Expect = 2e-09
 Identities = 31/289 (10%), Positives = 71/289 (24%), Gaps = 35/289 (12%)

Query: 293 SGSVTITVAEAETVMMDVRVES---HPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK 349
            G   +   E  +V +         +      W          G    L++     +   
Sbjct: 5   FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGAR----GGCITLISSEGYVSSKY 60

Query: 350 EGKEVTIYQD-TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAP 408
            G+   +     +G   + I+++  +++G Y C             +L V +       P
Sbjct: 61  AGR-ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQG------P 113

Query: 409 KFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVL 467
                 K    +     T+               Y+                      + 
Sbjct: 114 GLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVL-------------VID 160

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
           S     P       +    T   + +      ++I+++     G   C+A + + S    
Sbjct: 161 SSGYVNPNYTGRIRLDIQGTGQLLFS------VVINQLRLSDAGQYLCQAGDDSNSNKKN 214

Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEI 576
           A L +L         +    +               F  +    E  ++
Sbjct: 215 ADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDV 263

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  116 bits (292), Expect = 4e-30
 Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 18/204 (8%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV---- 61
           +         V   +  P   +C   G   P + W+ D  +      Y      S     
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 62  ----STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIA 117
               + +   + T+ED G YTC  +  GG +     + ++        P       P  A
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL----VPPSKPTVNIPSSA 119

Query: 118 EAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTT-----GECVLSISEAT 171
              + A L  +   G P     W++    +  +   T  F+ ++         L     +
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179

Query: 172 PQDEAVYSVKAVNTFGRAECRANL 195
             D   YS +A N +G       +
Sbjct: 180 ASDTGEYSCEARNGYGTPMTSNAV 203

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  111 bits (278), Expect = 3e-28
 Identities = 41/212 (19%), Positives = 67/212 (31%), Gaps = 26/212 (12%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK----- 265
           + T+      + +P+++ V L   Y+G  +P V+W  +  +                   
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 266 ------LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHP 316
                 +  K  T++ TG Y   V  E G +     V + V       TV +        
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGN 123

Query: 317 TASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI------YQDTDGLCKLAISE 370
            A              G P    TW  DG  M    + T       Y       +L    
Sbjct: 124 RAVL------TCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177

Query: 371 VFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
           +   + G YSC A N  G  + +  + +E  E
Sbjct: 178 LSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  107 bits (268), Expect = 7e-27
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 26/215 (12%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE-- 162
           +         V     +P  L    +G  +P + W   + +      +  +   +  +  
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 163 ----CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL 218
                 ++    T +D   Y+       G +     + L          VL  P+     
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL---------IVLVPPSKPTVN 114

Query: 219 QALLVPKDSTVTLE-AEYTGTPTPEVKWFKNGKEIVS----------KDIETKDNVTKLV 267
                   +   L  +E  G+P  E  WFK+G  + +                    +LV
Sbjct: 115 IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV 174

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
               +   TG+Y     N  G   TS +V +   E
Sbjct: 175 FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 97.3 bits (242), Expect = 2e-23
 Identities = 34/247 (13%), Positives = 67/247 (27%), Gaps = 52/247 (21%)

Query: 293 SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGK 352
            GSVT+  +E      +VR+  +                +G  +P V W  D        
Sbjct: 2   MGSVTVHSSEP-----EVRIPENNPVKL-------SCAYSGFSSPRVEWKFDQGDTTRLV 49

Query: 353 EVTIYQDTDGLCK-------LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESG 405
                       +       +    V  E+ G Y+C      G +     + +       
Sbjct: 50  CYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV--- 106

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
             P       P  A   + A L  +   G P     W++    +  +   T  F+ ++  
Sbjct: 107 -PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS-- 163

Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
                                      + +     L+   ++    G+ +C A N  G+ 
Sbjct: 164 --------------------------YVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 197

Query: 525 TCTATLS 531
             +  + 
Sbjct: 198 MTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 79.2 bits (195), Expect = 5e-17
 Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESV--- 61
            P       P  +     A+ TC   +G P    TW KDG  +            S    
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166

Query: 62  ----STLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
                 L     +  D G Y+C+A N  G    S  + +
Sbjct: 167 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 64.6 bits (157), Expect = 5e-12
 Identities = 19/159 (11%), Positives = 39/159 (24%), Gaps = 34/159 (21%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
           +         V     +P  L    +G  +P + W   + +      +  +         
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITA------ 57

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
                              S E ++        +    +TR+  G  TC      G+   
Sbjct: 58  -------------------SYEDRVTFLPT--GITFKSVTREDTGTYTCMVSEEGGNSYG 96

Query: 527 TATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
              + L+       V+  P        +    G   + T
Sbjct: 97  EVKVKLI-------VLVPPSKPTVNIPSSATIGNRAVLT 128

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  120 bits (301), Expect = 4e-30
 Identities = 52/318 (16%), Positives = 79/318 (24%), Gaps = 38/318 (11%)

Query: 14  QPVV---SHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV-----STLE 65
           +P        E    F          T+ W     +    E       E+        L 
Sbjct: 23  EPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLW 82

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP--- 122
                  D G YTC   N    +  +  L V++K+    +P      K  I         
Sbjct: 83  FRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142

Query: 123 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
             +         P+I WY G  +I   N    E         LS   A   +   Y+   
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM------NLSFLIALISNNGNYTCVV 196

Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ--ALLVPKDSTVTLE----AEYT 236
                         L     +  P+    P I  P             + +       + 
Sbjct: 197 TYPENGRTFHLTRTLT-VKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFL 255

Query: 237 GTPTPEVKWFKNGKEI-------------VSKDIETKDNVTKLVIKQTTKK-TTGKYEIR 282
                EV W  +GK+                   E +     L IK+ T +     Y   
Sbjct: 256 MDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH 315

Query: 283 VVNEAGEARTSGSVTITV 300
             +  GE   +  V   V
Sbjct: 316 ARSAKGEVAKAAKVKQKV 333

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  114 bits (287), Expect = 3e-28
 Identities = 48/319 (15%), Positives = 97/319 (30%), Gaps = 33/319 (10%)

Query: 120 QSPATLKATVTGRPTPSICWYR---GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 176
           +       +       ++ WY     ++   P N    E   +  + VL        D  
Sbjct: 33  EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92

Query: 177 VYSVKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY 235
            Y+    NT   ++    L V++K +  + P  L    +        +       ++  +
Sbjct: 93  NYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRIT---CPNVDGYF 149

Query: 236 TGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG--EARTS 293
             +  P + W+    +I + +    +    L          G Y   V           +
Sbjct: 150 PSSVKPTITWYMGCYKIQNFNNVIPEG-MNLSFLIALISNNGNYTCVVTYPENGRTFHLT 208

Query: 294 GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT--------GKPTPLVTWSHDG 345
            ++T+ V  +    +   + S            E +++               V W+ DG
Sbjct: 209 RTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDG 268

Query: 346 TP---------MKEGKEVTIYQDTDGLCKLAISEVFPEN-AGLYSCTAVNPVGEAVAAAT 395
                      + E    +  +D      L+I +V  E+    Y C A +  GE   AA 
Sbjct: 269 KKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAK 328

Query: 396 LAVEEKEESGEAPKFTKPL 414
           +  +       AP++T  L
Sbjct: 329 VKQKV-----PAPRYTVEL 342

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  106 bits (265), Expect = 2e-25
 Identities = 37/333 (11%), Positives = 80/333 (24%), Gaps = 56/333 (16%)

Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNV--------TKLVIKQTTKKT 275
             +  +        +    + W+   ++   ++                 L  + T    
Sbjct: 31  LFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLND 90

Query: 276 TGKYEIRVVNEAGEARTSGSVTITV-----AEAETVMMDVRVESHPTASFQWFIHSEPVV 330
           TG Y   + N    ++ +  + +            + +      +               
Sbjct: 91  TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDG--Y 148

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV--- 387
                 P +TW      ++    V           L+       N G Y+C    P    
Sbjct: 149 FPSSVKPTITWYMGCYKIQNFNNVIPEGMN-----LSFLIALISNNGNYTCVVTYPENGR 203

Query: 388 -GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQ--SPATLKATVT----GRPTPSIC 440
                   T+ V    ++   P    P   V+ E +      +  TV           + 
Sbjct: 204 TFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVW 263

Query: 441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
           W    ++                                 ++  S + ++   +    +L
Sbjct: 264 WTIDGKKPDDITID-------------------------VTINESISHSRTEDETRTQIL 298

Query: 501 LISKITR-DQIGDVTCRAENVAGSVTCTATLSL 532
            I K+T  D      C A +  G V   A +  
Sbjct: 299 SIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 80.3 bits (197), Expect = 1e-16
 Identities = 35/216 (16%), Positives = 55/216 (25%), Gaps = 27/216 (12%)

Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM-------K 349
            I V E E   +   +  H                       + W               
Sbjct: 16  QIQVFEDEPARIKCPLFEHFL--------KFNYSTAHSAGLTLIWYWTRQDRDLEEPINF 67

Query: 350 EGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPK 409
              E  I ++ D    L        + G Y+C   N    +  A  L V +K+    +P 
Sbjct: 68  RLPENRISKEKD---VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPM 124

Query: 410 FTKPLKPVIAEAQSP---ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
                K  I           +         P+I WY G  +I   N    E         
Sbjct: 125 KLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM------N 178

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI 502
           LS   A   +   Y+   +  E        R++ + 
Sbjct: 179 LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVK 214

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score =  112 bits (281), Expect = 8e-30
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTL 64
            PRFI+  + +   + +      KV G P P ++W  +G  + + + + +   E  + +L
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
                   D G Y C A N  G AT +  L VL KE
Sbjct: 65  IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 95.9 bits (239), Expect = 4e-24
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 2/99 (2%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           +   P+F +  + +  +      +   V+G P P + WY     +  D+ H M  +   G
Sbjct: 2   AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE-KG 60

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRK 199
              L        D   Y+  A N  G A     L VL K
Sbjct: 61  LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
           ++ ++                 V+G P P V+W  +G  ++      +     GL  L  
Sbjct: 14  NMSIDEGRFCRMD-------FKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIF 66

Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
             V   +AG Y+C A N  GEA     L V  KE
Sbjct: 67  EVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 88.2 bits (219), Expect = 2e-21
 Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 34/132 (25%)

Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           +   P+F +  + +  +      +   V+G P P + WY     +  D+ H M  +   G
Sbjct: 2   AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE-KG 60

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
              L        D   Y                                  C A+N AG 
Sbjct: 61  LHSLIFEVVRASDAGAY---------------------------------ACVAKNRAGE 87

Query: 524 VTCTATLSLLPE 535
            T T  L +L +
Sbjct: 88  ATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 82.8 bits (205), Expect = 1e-19
 Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVT 264
           +  P  ++  + + + +     ++ + +G P P+V W+ NG+ + S D    I ++  + 
Sbjct: 3   MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
            L+ +       G Y     N AGEA  +  + +   E
Sbjct: 63  SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score =  111 bits (280), Expect = 1e-29
 Identities = 27/95 (28%), Positives = 39/95 (41%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           APR   +++       Q   F   V+  P   + W  +G EL  +     T    V TLE
Sbjct: 8   APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLE 67

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
           I++   +D G Y    TN  G A+  A L V   +
Sbjct: 68  ILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 96.6 bits (241), Expect = 2e-24
 Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
            AP+ T  ++               V  +PT  + WY    E+   +          G  
Sbjct: 7   HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS--GVL 64

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA 200
            L I +    D   Y     N  G A   A L +   
Sbjct: 65  TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 89.7 bits (223), Expect = 8e-22
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 298 ITVAEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV 354
            T+  A      M   RV       F        + V  KPT  V W H+G  ++E  ++
Sbjct: 3   FTLDHAPRITLRMRSHRVPCGQNTRFI-------LNVQSKPTAEVKWYHNGVELQESSKI 55

Query: 355 TIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
                  G+  L I +   +++G Y     N  GEA   ATL V   +
Sbjct: 56  HYTNT-SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVT 264
           +  AP I   +++  VP              PT EVKW+ NG E+             V 
Sbjct: 5   LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL 64

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
            L I       +G Y     N  GEA    ++ +T  +
Sbjct: 65  TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 19/125 (15%), Positives = 28/125 (22%), Gaps = 35/125 (28%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
            AP+ T  ++               V  +PT  + WY    E+   +          G  
Sbjct: 7   HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS--GVL 64

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
            L I +    D   Y                                      N  G  +
Sbjct: 65  TLEILDCHTDDSGTY---------------------------------RAVCTNYKGEAS 91

Query: 526 CTATL 530
             ATL
Sbjct: 92  DYATL 96

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  110 bits (276), Expect = 4e-29
 Identities = 27/94 (28%), Positives = 46/94 (48%)

Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
           LA R + K + +  ++ + A F+C  +G P+PT+TW + G  L  +  + +TT +  ST 
Sbjct: 13  LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
           EI +    D G Y+    N  G       L + +
Sbjct: 73  EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 2/99 (2%)

Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
           ++  A +     + +       A       G P P++ W R  + +     H +      
Sbjct: 10  KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK-- 67

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRK 199
            +    IS     DE  YSV   N+ G+ E    L ++K
Sbjct: 68  YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 85.9 bits (213), Expect = 2e-20
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
           T    + V    +A F            G+P P VTW   G  +       +        
Sbjct: 19  TKPRSMTVYEGESARFS-------CDTDGEPVPTVTWLRKGQVLSTSARHQVTTT-KYKS 70

Query: 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
              IS V   + G YS    N  G+  A  TL +++
Sbjct: 71  TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 83.9 bits (208), Expect = 8e-20
 Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 35/132 (26%)

Query: 399 EEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 458
               ++  A +     + +       A       G P P++ W R  + +     H +  
Sbjct: 6   HHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT 65

Query: 459 NPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAE 518
                +    IS     DE  Y                                 +   E
Sbjct: 66  TK--YKSTFEISSVQASDEGNY---------------------------------SVVVE 90

Query: 519 NVAGSVTCTATL 530
           N  G      TL
Sbjct: 91  NSEGKQEAEFTL 102

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNV 263
           +   A  I+   +++ V +  +     +  G P P V W + G+ + +     + T    
Sbjct: 10  KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69

Query: 264 TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           +   I        G Y + V N  G+     ++TI
Sbjct: 70  STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  113 bits (283), Expect = 5e-29
 Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 27/202 (13%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLI---------T 56
             F+     +   +       C+++     P + W +DG  L   +              
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 57  TVESVSTLEIINPTKEDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPV 115
               VS L I +    D G Y C               + +         P F +  +  
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE------GLPYFLEEPEDR 116

Query: 116 IAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
              A +P  L     G P P  + W +    +    GH  +          S+       
Sbjct: 117 TVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ---------RSLHVPGLNK 167

Query: 175 EAVYSVKAVNTFGRAECRANLV 196
            + +S +A N  G    R   +
Sbjct: 168 TSSFSCEAHNAKGVTTSRTATI 189

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 90.3 bits (224), Expect = 5e-21
 Identities = 31/207 (14%), Positives = 55/207 (26%), Gaps = 24/207 (11%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
           E   F      +        TL+         P + W R  + +   +    +      E
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60

Query: 163 -------CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV 215
                    L I+     D   Y             +   V           +   P  +
Sbjct: 61  QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYV----------GLEGLPYFL 110

Query: 216 RPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKK 274
              +   V  ++   L  +  G P P ++ W ++   + +           L +    K 
Sbjct: 111 EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS--LHVPGLNK- 167

Query: 275 TTGKYEIRVVNEAGEARTSGSVTITVA 301
            T  +     N  G   TS + TITV 
Sbjct: 168 -TSSFSCEAHNAKGVT-TSRTATITVL 192

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 90.0 bits (223), Expect = 6e-21
 Identities = 35/211 (16%), Positives = 61/211 (28%), Gaps = 34/211 (16%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLE-AEYTGTPTPEVKWFKNGKEIVSKD------------ 256
           E    V     +   +  T TL          PEV W ++G+ +   D            
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60

Query: 257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVE 313
            +    V++L I       TG+Y+  V         S    + +           D  V 
Sbjct: 61  QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQT-FVSQPGYVGLEGLPYFLEEPEDRTVA 119

Query: 314 SHPTASFQWFIHSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF 372
           ++   +             G P P+ + W  D  P        +        + ++    
Sbjct: 120 ANTPFNLS-------CQAQGPPEPVDLLWLQDAVP--------LATAPGHGPQRSLHVPG 164

Query: 373 PENAGLYSCTAVNPVGEAV-AAATLAVEEKE 402
                 +SC A N  G      AT+ V  ++
Sbjct: 165 LNKTSSFSCEAHNAKGVTTSRTATITVLPQQ 195

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 89.2 bits (221), Expect = 1e-20
 Identities = 36/238 (15%), Positives = 65/238 (27%), Gaps = 65/238 (27%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY--------QDT 360
           ++      T +          +      P V W  DG  ++                 D 
Sbjct: 11  NITGARGLTGTL------RCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64

Query: 361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTKPLKPVIA 419
             + +L I+ +   + G Y C         V+    + +E        P F +  +    
Sbjct: 65  IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE------GLPYFLEEPEDRTV 118

Query: 420 EAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 478
            A +P  L     G P P  + W +    +    GH  +          S+        +
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ---------RSLHVPGLNKTS 169

Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC-TATLSLLPE 535
            +                                 +C A N  G  T  TAT+++LP+
Sbjct: 170 SF---------------------------------SCEAHNAKGVTTSRTATITVLPQ 194

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 72.6 bits (178), Expect = 6e-15
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTM-TWQKDGTELHATEHYLITTVESVSTL 64
            P F+E+ +        P   +C+ +G P P    W +D   L     +         +L
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ-----RSL 160

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
            +          ++C+A N  GV T     I 
Sbjct: 161 HVPGL--NKTSSFSCEAHNAKGVTTSRTATIT 190

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 21/165 (12%), Positives = 37/165 (22%), Gaps = 37/165 (22%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
           E   F      +        TL+         P + W R  + +   +    +      E
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60

Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS- 523
               I                            S L I+ +     G   C       + 
Sbjct: 61  QDDWIV--------------------------VSQLRITSLQLSDTGQYQCLVFLGHQTF 94

Query: 524 VTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
           V+    +          +   P F++ PE   V        + Q 
Sbjct: 95  VSQPGYVG---------LEGLPYFLEEPEDRTVAANTPFNLSCQA 130

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score =  109 bits (274), Expect = 6e-29
 Identities = 26/91 (28%), Positives = 36/91 (39%)

Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           P  +  +Q      +  A F  K  G P PT  W KDG  +     Y ++  +    LE
Sbjct: 6  KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65

Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIV 96
          I      D G+YTC   N  G  + S  L +
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
             P     L+     + S A      TG P P+  W +  + I     + +  +   G  
Sbjct: 5   SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK--GGF 62

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
            L I +    D  +Y+    N+ G       L ++
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 86.6 bits (215), Expect = 7e-21
 Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 35/126 (27%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
             P     L+     + S A      TG P P+  W +  + I     + +  +   G  
Sbjct: 5   SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK--GGF 62

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
            L I +    D  +Y                                 TC  +N AGSV+
Sbjct: 63  FLEIHKTDTSDSGLY---------------------------------TCTVKNSAGSVS 89

Query: 526 CTATLS 531
            +  L+
Sbjct: 90  SSCKLT 95

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 86.6 bits (215), Expect = 8e-21
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
           T + D  V S   A F        V  TG+P P   W+ DG  + +G +  + +D  G  
Sbjct: 11  TGLQDTTVSSDSVAKFA-------VKATGEPRPTAIWTKDGKAITQGGKYKLSED-KGGF 62

Query: 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
            L I +    ++GLY+CT  N  G   ++  L ++
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 84.3 bits (209), Expect = 4e-20
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVT 264
           +   P IV  LQ   V  DS      + TG P P   W K+GK I       +       
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
            L I +T    +G Y   V N AG   +S  +TI
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  110 bits (277), Expect = 1e-28
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 70  TKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV 129
            ++  G       N   V    A L  + +E+    P FTK +  +     S A     V
Sbjct: 6   GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65

Query: 130 TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA 189
            G P P + W++    +       ++++   G C L+ISE    D+A Y+ KAVN+ G A
Sbjct: 66  EGYPDPEVMWFKDDNPVKESRHFQIDYDE-EGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124

Query: 190 ECRANLV 196
            C A L+
Sbjct: 125 TCTAELL 131

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  106 bits (266), Expect = 3e-27
 Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTL 64
            P F + I  +   +   A F CKVEG+P P + W KD   +  + H+ I   E    +L
Sbjct: 41  KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPK 107
            I     +D   YTCKA N  G ATC+A L+V    + GE   
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG 143

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  100 bits (251), Expect = 4e-25
 Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 14/146 (9%)

Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV-------MMDVRVESHPTASFQWF 323
           + +K +G      +N          +     E   V       ++D+ V     A F   
Sbjct: 5   SGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFD-- 62

Query: 324 IHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
                  V G P P V W  D  P+KE +   I  D +G C L ISEV  ++   Y+C A
Sbjct: 63  -----CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 117

Query: 384 VNPVGEAVAAATLAVEEKEESGEAPK 409
           VN +GEA   A L VE   + GE   
Sbjct: 118 VNSLGEATCTAELLVETMGKEGEGEG 143

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 98.8 bits (246), Expect = 2e-24
 Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 34/155 (21%)

Query: 376 AGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP 435
           +G    + +N        A L    +E+    P FTK +  +     S A     V G P
Sbjct: 10  SGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYP 69

Query: 436 TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG 495
            P + W++    +       ++++   G C L+ISE    D+A Y               
Sbjct: 70  DPEVMWFKDDNPVKESRHFQIDYDE-EGNCSLTISEVCGDDDAKY--------------- 113

Query: 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530
                             TC+A N  G  TCTA L
Sbjct: 114 ------------------TCKAVNSLGEATCTAEL 130

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 81.4 bits (201), Expect = 2e-18
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 11/145 (7%)

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
           +  +S       +  S    N     +            + + +    P   + +  + V
Sbjct: 1   ISGMSGRKASGSSPTSPINANKVENEDA-------FLEEVAEEKPHVKPYFTKTILDMEV 53

Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTKLVIKQTTKKTTGKY 279
            + S    + +  G P PEV WFK+   +           ++    L I +       KY
Sbjct: 54  VEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKY 113

Query: 280 EIRVVNEAGEARTSGSVTITVAEAE 304
             + VN  GEA  +  + +     E
Sbjct: 114 TCKAVNSLGEATCTAELLVETMGKE 138

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 506 TRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
            R   G       N        A L  + E         P F KT    +V++G +  F 
Sbjct: 6   GRKASGSSPTSPINANKVENEDAFLEEVAE---EKPHVKPYFTKTILDMEVVEGSAARFD 62

Query: 566 AQV 568
            +V
Sbjct: 63  CKV 65

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  115 bits (289), Expect = 1e-28
 Identities = 46/321 (14%), Positives = 82/321 (25%), Gaps = 44/321 (13%)

Query: 4   VLAPRFI-EKIQPVVSHQEQPALFTCKVEGHPL---------PTMTWQKDGTELHATEHY 53
            L P  +       ++   +P    C      L           + W+K G         
Sbjct: 26  WLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR 85

Query: 54  LITTVESVSTLEIINPTKEDIG-VYTCKATNIGG-VATCSANLIVLEKEESGEAPKFTKP 111
           +         L I N T  D    Y C  T   G          + +       P     
Sbjct: 86  VKN-----GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP------PSCIPE 134

Query: 112 LKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 170
              +    +    L   +   +   +I WY+  +E++ D     +         L I   
Sbjct: 135 TYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN-----LIIHNP 189

Query: 171 TPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVT 230
             +D   Y         R +    +   K  T+   +      I+ P     V       
Sbjct: 190 ELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN--VTIGEPAN 247

Query: 231 LEAEYTGTPTPE----VKWFKNGKEIVSKDIETKDNVTK--------LVIKQTTKKTTGK 278
           +      T        + W      I+  D      +T         L  +  T++  G 
Sbjct: 248 ITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGN 307

Query: 279 -YEIRVVNEAGEARTSGSVTI 298
            Y  R  N   +   + +V +
Sbjct: 308 TYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  104 bits (260), Expect = 8e-25
 Identities = 40/318 (12%), Positives = 79/318 (24%), Gaps = 56/318 (17%)

Query: 113 KPVIAEAQSPATLK---------ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
              +A    P + K         +         + W +  +   P N      +      
Sbjct: 37  MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGD------ 90

Query: 164 VLSISEATPQD-EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALL 222
            L I+  T  D    Y        G                    + + P+ +     L 
Sbjct: 91  -LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRS----------HIRKPPSCIPETYELG 139

Query: 223 VPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
                 + L            + W+KN +E++    +   +   L+I     + +G+Y+ 
Sbjct: 140 THDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDC 199

Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----------- 330
            V  +    +    V+            + V       F+  +  +  V           
Sbjct: 200 YVHYDDVRIKNDIVVSRCK--------ILTVIPSQDHRFKLILDPKINVTIGEPANITCT 251

Query: 331 VTGKPTP----LVTWSHDGTPMKEGKEVTIYQDTDGLC----KLAISEVFPENAG-LYSC 381
                      L+ W +    +           T         L    V  E  G  Y+C
Sbjct: 252 AVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTC 311

Query: 382 TAVNPVGEAVAAATLAVE 399
              N   +     T+ +E
Sbjct: 312 RGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  101 bits (252), Expect = 1e-23
 Identities = 43/345 (12%), Positives = 83/345 (24%), Gaps = 64/345 (18%)

Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLE---------AEYTGTPTPEVKWFKNGKEIVSKDI 257
           + L    +       +       + +         +         V W K GK     + 
Sbjct: 25  KWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR 84

Query: 258 ETKDNVTKLVIKQTTKKTTG-KYEIRVVNEAGEARTSGSVTITVAEAETVM---MDVRVE 313
             K+    L I   T   +  +Y   V  + G+    G V   + +  + +    ++   
Sbjct: 85  RVKNGD--LWIANYTSNDSHRRYLCTVTTKNGDC-VQGIVRSHIRKPPSCIPETYELGTH 141

Query: 314 SHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFP 373
                           ++  K    +TW  +   +                 L I     
Sbjct: 142 DKYGIDLYC------GILYAKHYNNITWYKNNQELIIDGTKYSQSGQ----NLIIHNPEL 191

Query: 374 ENAGLYSCTAVNPVGEAVAAATLAVEEK---EESGEAPKFTKPLKPVIAEAQSPATLKAT 430
           E++G Y C              ++  +      S +          +      PA +  T
Sbjct: 192 EDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCT 251

Query: 431 VTGRPTP----SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS 486
                       I W      I+  +        ++G                       
Sbjct: 252 AVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGI--------------------- 290

Query: 487 TETKIMTDGNRSVLLISKITRDQIGDV-TCRAENVAGSVTCTATL 530
                      + L    +T + IG+  TCR  N     T T T+
Sbjct: 291 ---------TEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 79.9 bits (196), Expect = 2e-16
 Identities = 35/290 (12%), Positives = 67/290 (23%), Gaps = 64/290 (22%)

Query: 294 GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE 353
           G++    A  E              S ++               +V W   G   +    
Sbjct: 35  GTMNDMAALGEPFSAKCPPIEDSLLSHRY----------NDKDNVVNWEKIGKTRRPLN- 83

Query: 354 VTIYQDTDGLCKLAISEVFPENAG-LYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFT 411
               +  +G   L I+     ++   Y CT     G+ V       + +       P   
Sbjct: 84  ---RRVKNG--DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP------PSCI 132

Query: 412 KPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS 470
                +    +    L   +   +   +I WY+  +E++ D     +         L I 
Sbjct: 133 PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN-----LIIH 187

Query: 471 EATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL 530
               +D   Y                                  C        +     +
Sbjct: 188 NPELEDSGRY---------------------------------DCYVHYDDVRIKNDIVV 214

Query: 531 SLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV-GYSERLEIPLI 579
           S      V    +    +       V  G+    T      S  ++  LI
Sbjct: 215 SRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLI 264

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  108 bits (271), Expect = 2e-28
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTL 64
            P F++    +   + +     CKV G P P ++WQ DG  +     + +   E+ V +L
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEES 102
            I   T  D G+YTC ATN  G  + S  L+V  KE  
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 97.1 bits (242), Expect = 2e-24
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
            SG  P F +    +  +      +   V+G PTP + W    + + PD+ H M      
Sbjct: 5   SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE-N 63

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
           G   L I   T +D  +Y+  A N  G+      LV
Sbjct: 64  GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 90.9 bits (226), Expect = 3e-22
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
           D+ V+                 V+G PTP ++W  DG P++      +    +G+  L I
Sbjct: 18  DLTVQEGKLCRMD-------CKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLII 70

Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
             V   +AG+Y+C A N  G+   +  L V  KE  
Sbjct: 71  EPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 89.7 bits (223), Expect = 9e-22
 Identities = 27/128 (21%), Positives = 40/128 (31%), Gaps = 34/128 (26%)

Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
            SG  P F +    +  +      +   V+G PTP + W    + + PD+ H M      
Sbjct: 5   SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE-N 63

Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
           G   L I   T +D  +Y                                 TC A N AG
Sbjct: 64  GVHSLIIEPVTSRDAGIY---------------------------------TCIATNRAG 90

Query: 523 SVTCTATL 530
             + +  L
Sbjct: 91  QNSFSLEL 98

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 78.9 bits (195), Expect = 4e-18
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIETKDNVTKL 266
            P  ++    L V +     ++ + +G PTP++ W  +GK +      K +  ++ V  L
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
           +I+  T +  G Y     N AG+   S  + +   E+
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  114 bits (286), Expect = 4e-28
 Identities = 41/212 (19%), Positives = 67/212 (31%), Gaps = 29/212 (13%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           P    ++           L  C+VEG  L    W     E  AT   + +       L +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT--VMKSGGLPSLGLTL 216

Query: 67  INPTKE-DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
            N T + +    TC A N  G A  S  + V           F   ++   A       +
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV----------SFPASVQLHTAVEMHHWCI 266

Query: 126 KATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV-----LSISEATPQDEAVYSV 180
             +V G+P PS+ W      +   +    EF             L +++ T  +   Y++
Sbjct: 267 PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL 326

Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAP 212
            A N FG+A                   ++ P
Sbjct: 327 LAANPFGQASASIMA-----------AFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  104 bits (259), Expect = 2e-24
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 18/200 (9%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKD--NVTKLV 267
             PT+   +    V     V L  +  G    +  W     E  +  +++    ++   +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSE 327
              T+            N+ G A  S  V + V+   +V +   VE H            
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVS--VQVNVSFPASVQLHTAVEMHHW--------CI 266

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK------LAISEVFPENAGLYSC 381
           P  V G+P P + W  +G+ + E   +          +      L +++    N G Y+ 
Sbjct: 267 PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL 326

Query: 382 TAVNPVGEAVAAATLAVEEK 401
            A NP G+A A+   A  + 
Sbjct: 327 LAANPFGQASASIMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 84.4 bits (208), Expect = 6e-18
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV--- 61
           +   F   +Q   + +         V+G P P++ W  +G+ L+ T       +E     
Sbjct: 245 VNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 304

Query: 62  ----STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
                 L +  PT  + G YT  A N  G A+ S     ++ 
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 83.6 bits (206), Expect = 1e-17
 Identities = 32/220 (14%), Positives = 56/220 (25%), Gaps = 59/220 (26%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
           V G+      W             +    + GL     +     N    +C A N VG A
Sbjct: 182 VEGRGLEQAGWILTELEQSATVMKSGGLPSLGL--TLANVTSDLNRKNVTCWAENDVGRA 239

Query: 391 VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP 450
             +  + V           F   ++   A       +  +V G+P PS+ W      +  
Sbjct: 240 EVSVQVNV----------SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNE 289

Query: 451 DNGHTMEFNPTTGECV-----LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI 505
            +    EF             L +++ T  +   Y                         
Sbjct: 290 TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY------------------------- 324

Query: 506 TRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545
                   T  A N  G  + +   +          M++P
Sbjct: 325 --------TLLAANPFGQASASIMAA---------FMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 80.9 bits (199), Expect = 9e-17
 Identities = 30/208 (14%), Positives = 54/208 (25%), Gaps = 28/208 (13%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
             P     +     +      L+  V GR      W   + E    +   M+        
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ---SATVMKSGGLPSLG 213

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
           +   +  +  +    +  A N  GRAE    +                 +    +Q    
Sbjct: 214 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQV---------------NVSFPASVQLHTA 258

Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK----------LVIKQTTK 273
            +     +     G P P ++W  NG  +        + +            L + Q T 
Sbjct: 259 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 318

Query: 274 KTTGKYEIRVVNEAGEARTSGSVTITVA 301
              G Y +   N  G+A  S        
Sbjct: 319 VNNGNYTLLAANPFGQASASIMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 18/148 (12%), Positives = 32/148 (21%), Gaps = 38/148 (25%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
             P     +     +      L+  V GR      W   + E       +          
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLG--- 213

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSV 524
                                             L ++ +T D    +VTC AEN  G  
Sbjct: 214 ----------------------------------LTLANVTSDLNRKNVTCWAENDVGRA 239

Query: 525 TCTATLSLLPESEVTDVMESPRFIKTPE 552
             +  +++   + V              
Sbjct: 240 EVSVQVNVSFPASVQLHTAVEMHHWCIP 267

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  110 bits (276), Expect = 6e-28
 Identities = 35/208 (16%), Positives = 57/208 (27%), Gaps = 23/208 (11%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS---- 62
                    V   + +    TC   G   P + W+       A   Y        +    
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 63  ----TLEIINPTKEDIGVYTCKATNIGGVATCSA--NLIVLEKEESGEAPKFTKPLKPVI 116
                +   + T++D G YTC  +  GG        +L VL        P       P  
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP------PSKPTISVPSS 115

Query: 117 AEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV------LSISE 169
               + A L  +   G P     W++    +L  +         +   +      L    
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175

Query: 170 ATPQDEAVYSVKAVNTFGRAECRANLVL 197
            T  D   Y  +A N +G A       +
Sbjct: 176 VTAFDSGEYYCQAQNGYGTAMRSEAAHM 203

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  102 bits (256), Expect = 3e-25
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 27/212 (12%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------ 265
            ++      + VP++ ++ L   Y+G  +P V+W        +                 
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 266 -----LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA---ETVMMDVRVESHPT 317
                +     T+K  G+Y   V  E G+     S+ +TV       T+ +   V     
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121

Query: 318 ASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC-------KLAISE 370
           A              G P    +W  DG  M            +           L    
Sbjct: 122 AVLTCS------EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175

Query: 371 VFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
           V   ++G Y C A N  G A+ +    ++  E
Sbjct: 176 VTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 86.6 bits (214), Expect = 1e-19
 Identities = 30/237 (12%), Positives = 59/237 (24%), Gaps = 46/237 (19%)

Query: 304 ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGL 363
            T   DV+V  + +              +G  +P V W                      
Sbjct: 5   YTAQSDVQVPENESIKL-------TCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYA 57

Query: 364 CK-------LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKP 416
            +       +  S V  ++ G Y+C      G+     ++ +         P       P
Sbjct: 58  DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV----PPSKPTISVP 113

Query: 417 VIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ 475
                 + A L  +   G P     W++    +L  +                       
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRA----------------- 156

Query: 476 DEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
                        +    D     L+   +T    G+  C+A+N  G+   +    +
Sbjct: 157 ----------FMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 74.2 bits (182), Expect = 2e-15
 Identities = 24/104 (23%), Positives = 31/104 (29%), Gaps = 9/104 (8%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLI--------T 56
            P       P        A+ TC   +G P    +W KDG  +   +            T
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163

Query: 57  TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
                  L     T  D G Y C+A N  G A  S    +   E
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 67.3 bits (164), Expect = 6e-13
 Identities = 20/158 (12%), Positives = 36/158 (22%), Gaps = 34/158 (21%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
                    V         L  T +G  +P + W   +        +  +      + V 
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV- 60

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
                                    +      +  S +TR   G+ TC      G     
Sbjct: 61  -----------------------TFSSSG---ITFSSVTRKDNGEYTCMVSEEGGQNYGE 94

Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
            ++ L        V+  P        + V  G   + T
Sbjct: 95  VSIHLT-------VLVPPSKPTISVPSSVTIGNRAVLT 125

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score =  106 bits (267), Expect = 7e-28
 Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTL 64
          AP+  E+IQ     Q   A F  +V G P P   W K+G ++  ++       E  V  L
Sbjct: 5  APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64

Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
           I + T ED      KA NI G  +  A L+V  K
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score =  103 bits (258), Expect = 1e-26
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           EAPK  + ++       S A  +  V G+P P   WY+   +I   +     +      C
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE-DNVC 62

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
            L I + T +D A   VKA+N  G     A L+
Sbjct: 63  ELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 94.3 bits (235), Expect = 1e-23
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
           V V GKP P   W  +G  ++    +  Y   D +C+L I +V  E++      A+N  G
Sbjct: 27  VRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAG 86

Query: 389 EAVAAATLAVEEK 401
           E  + A L V+ K
Sbjct: 87  ETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 92.7 bits (231), Expect = 5e-23
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 34/125 (27%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
           EAPK  + ++       S A  +  V G+P P   WY+   +I   +     +      C
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE-DNVC 62

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
            L I + T +D A                                     +A N+AG  +
Sbjct: 63  ELVIRDVTGEDSASI---------------------------------MVKAINIAGETS 89

Query: 526 CTATL 530
             A L
Sbjct: 90  SHAFL 94

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 85.0 bits (211), Expect = 3e-20
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVT 264
           +EAP I   +Q+  V + S         G P PE +W+KNG +I   D       +DNV 
Sbjct: 3   MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 62

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           +LVI+  T + +    ++ +N AGE  +   + +
Sbjct: 63  ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score =  105 bits (265), Expect = 1e-27
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES-VSTL 64
           P F   +      + Q  + + +V+G P P ++W ++   +   +       E  +  L
Sbjct: 5  PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64

Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
           I+   + D G YTCKA N  G   C A L V  +
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 98.1 bits (245), Expect = 6e-25
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           S   P F   L            +   V G P P + W R ++ + PD     E     G
Sbjct: 2   SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA-EGG 60

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
            C L I  A   D   Y+ KAVN +G  +C A L 
Sbjct: 61  LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 89.6 bits (223), Expect = 6e-22
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 19/104 (18%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
            +V E + V+M +RV                    G+P P+V+W  +  P++  +     
Sbjct: 15  QSVREGQDVIMSIRV-------------------QGEPKPVVSWLRNRQPVRPDQRRFAE 55

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
           +   GLC+L I      +AG Y+C AVN  G     A L V  +
Sbjct: 56  EAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 28/128 (21%), Positives = 35/128 (27%), Gaps = 34/128 (26%)

Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           S   P F   L            +   V G P P + W R ++ + PD     E     G
Sbjct: 2   SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA-EGG 60

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
            C L I  A   D   Y                                 TC+A N  G+
Sbjct: 61  LCRLRILAAERGDAGFY---------------------------------TCKAVNEYGA 87

Query: 524 VTCTATLS 531
             C A L 
Sbjct: 88  RQCEARLE 95

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 80.4 bits (199), Expect = 9e-19
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDNVTK 265
             PT    L    V +   V +     G P P V W +N + +         E +  + +
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           L I    +   G Y  + VNE G  +    + +
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  105 bits (263), Expect = 2e-27
 Identities = 29/96 (30%), Positives = 40/96 (41%)

Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
            S  AP F   LK        P T    V G P P I W++  ++I P + H        
Sbjct: 4   GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
           G C L  + +T  D+  Y++ A N  GR  C   L+
Sbjct: 64  GTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  103 bits (259), Expect = 1e-26
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVES-VST 63
           AP F  K++     +  P  FTC+V G+P P + W KDG ++   ++HY I        +
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEES 102
           L     T +D G YT  A N  G  +C+  L+V      
Sbjct: 68  LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 30/128 (23%), Positives = 40/128 (31%), Gaps = 33/128 (25%)

Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
            S  AP F   LK        P T    V G P P I W++  ++I P + H        
Sbjct: 4   GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63

Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
           G C L  + +T  D+  Y                                 T  A N  G
Sbjct: 64  GTCSLHTTASTLDDDGNY---------------------------------TIMAANPQG 90

Query: 523 SVTCTATL 530
            ++CT  L
Sbjct: 91  RISCTGRL 98

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 86.6 bits (215), Expect = 1e-20
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE-GKEVTIYQDTDGLCKLA 367
             ++      +F          V G P P + W  DG  +       TI +D DG C L 
Sbjct: 17  HYKIFEGMPVTFT-------CRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH 69

Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
            +    ++ G Y+  A NP G       L V+     
Sbjct: 70  TTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 83.9 bits (208), Expect = 7e-20
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVT 264
            AP     L+   + +   VT      G P P++ WFK+GK+I  K          D   
Sbjct: 7   GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
            L    +T    G Y I   N  G    +G + +    + 
Sbjct: 67  SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  110 bits (277), Expect = 3e-27
 Identities = 47/318 (14%), Positives = 88/318 (27%), Gaps = 46/318 (14%)

Query: 9   FIEKIQPVVSHQEQPALFTCKVEGHPLPTM-----TWQKDGTE-----LHATEHYLITTV 58
            ++    V           C ++   +        TW + G        H T+    +  
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 59  ESVS-------------TLEIINPTKEDIGVYTCKA-TNIGGVATCSANLIVLEKEESGE 104
           + +              +L +     ED G YTC   T   G  +    L VL K     
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK----- 117

Query: 105 APKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT-TGE 162
            P+ T  ++ V    +     +  +  GRP   I W+     +   +      + T T  
Sbjct: 118 -PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVT 176

Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI-VRPLQAL 221
            +  +  ++  D    + K  +          + L          V   P + +      
Sbjct: 177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL---------TVYYPPEVSISGYDNN 227

Query: 222 LVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYE 280
                +  TL  +    P P    W      +    +        L+I+   K       
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQ---LLIRPVDKPINTTLI 284

Query: 281 IRVVNEAGEARTSGSVTI 298
             V N  G  +   +V +
Sbjct: 285 CNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  101 bits (253), Expect = 5e-24
 Identities = 46/325 (14%), Positives = 77/325 (23%), Gaps = 59/325 (18%)

Query: 108 FTKPLKPVIAEAQSPATLKATVTGRPTP-----SICWYRGKEEILPDNGH---------- 152
             +    V        TL   +            + W R  E       H          
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 153 ------TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF-GRAECRANLVLRKATTIDK 205
                             L +     +DE  Y+   V    G       L          
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL---------- 112

Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLE-AEYTGTPTPEVKWFKNGKEI------VSKDIE 258
            RVL  P     +Q + +  +           G P  ++ W  +   +            
Sbjct: 113 -RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG 171

Query: 259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTA 318
           T    +  ++  +++        +V +E+ E     +V +TV     V +          
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSI-------SGY 224

Query: 319 SFQWFIHSEPVV----VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFP 373
              W++              P P    WS    P+         Q       L I  V  
Sbjct: 225 DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQ-------LLIRPVDK 277

Query: 374 ENAGLYSCTAVNPVGEAVAAATLAV 398
                  C   N +G   A  T+ V
Sbjct: 278 PINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 85.5 bits (211), Expect = 1e-18
 Identities = 36/201 (17%), Positives = 52/201 (25%), Gaps = 21/201 (10%)

Query: 3   EVLA-PRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLIT---T 57
            VLA P+   ++Q V    E   +  C    G P   +TW  D   +  T         T
Sbjct: 113 RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT 172

Query: 58  VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA--NLIVLEKEESGEAPKFTKPLKPV 115
           V   S   ++  ++ D    TCK  +           NL V                   
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP-----EVSISGYDNN 227

Query: 116 IAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
               Q+ ATL       P P    W      + P     +          L I       
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP---FAVAQGAQ-----LLIRPVDKPI 279

Query: 175 EAVYSVKAVNTFGRAECRANL 195
                    N  G  +    +
Sbjct: 280 NTTLICNVTNALGARQAELTV 300

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 84.4 bits (208), Expect = 4e-18
 Identities = 43/352 (12%), Positives = 81/352 (23%), Gaps = 87/352 (24%)

Query: 214 IVRPLQALLVPKDSTVTLEAEYTGTPTP-----EVKWFKNGK------------------ 250
           +V+    +      +VTL               ++ W ++G+                  
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 251 ---EIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA---EAE 304
              E V+  +  +     L +     +  G Y    V     +R S  + + V    +  
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSR-SVDIWLRVLAKPQNT 121

Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQD--TDG 362
             +  V++   P            V   G+P   +TW  D   M    +V  +       
Sbjct: 122 AEVQKVQLTGEPVPMA------RCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175

Query: 363 LCKLAISEVFPENAGLYSCTAVNPVGEA--VAAATLAVEEKEESGEAPKFTKPLKPVIAE 420
                +      +    +C   +   E   +    L V                      
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP-----EVSISGYDNNWYL 230

Query: 421 AQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 479
            Q+ ATL       P P    W      +                               
Sbjct: 231 GQNEATLTCDARSNPEPTGYNWSTTMGPL------------------------------- 259

Query: 480 YSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                      +        LLI  + +     + C   N  G+     T+ 
Sbjct: 260 -------PPFAVAQGAQ---LLIRPVDKPINTTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 69.0 bits (168), Expect = 6e-13
 Identities = 37/278 (13%), Positives = 75/278 (26%), Gaps = 57/278 (20%)

Query: 297 TITVAEAETVMMDVRVESHPT-----ASFQWFIHSEPV-VVTGKPTPLVTWSHDGTPMKE 350
            +     ++V +   ++         +   W  H E   +     T   ++S        
Sbjct: 9   QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68

Query: 351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN-PVGEAVAAATLAVEEKEESGEAPK 409
              +           L +  +  E+ G Y+C  V  P G       L V  K      P+
Sbjct: 69  AARLG---AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK------PQ 119

Query: 410 FTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 468
            T  ++ V    +     +  +  GRP   I W+     +   +      + T       
Sbjct: 120 NTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV---- 175

Query: 469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTA 528
                                        S+ ++   ++    +VTC+ E+ +       
Sbjct: 176 ----------------------------TSLWILVPSSQVDGKNVTCKVEHESFEKPQLL 207

Query: 529 TLSLLPESEVTDVMESPRF-IKTPETAKVMDGQSVLFT 565
           T++L        V   P   I   +    +       T
Sbjct: 208 TVNL-------TVYYPPEVSISGYDNNWYLGQNEATLT 238

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 60.5 bits (146), Expect = 3e-10
 Identities = 20/97 (20%), Positives = 24/97 (24%), Gaps = 9/97 (9%)

Query: 3   EVLAPR--FIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVE 59
            V  P    I          +  A  TC    +P PT   W      L          V 
Sbjct: 212 TVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF------AVA 265

Query: 60  SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
             + L I    K       C  TN  G       + V
Sbjct: 266 QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score =  105 bits (263), Expect = 4e-27
 Identities = 25/101 (24%), Positives = 39/101 (38%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            P+ I+  +       +      KV G    T TW K   ++  +EH  +   E+ S L 
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAP 106
           I+   +E  G YT    N  G      NL V++K +     
Sbjct: 67  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 90.1 bits (224), Expect = 6e-22
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
             P+  +  +     A     L   VTG    +  W + +++I       +E +      
Sbjct: 6   SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE--NGS 63

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
            L+I  A  +    Y++   N  G  + + NL     T +DKP 
Sbjct: 64  KLTILAARQEHCGCYTLLVENKLGSRQAQVNL-----TVVDKPD 102

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 89.7 bits (223), Expect = 8e-22
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
             P I++  +   V    +V L  + TGT      W K  K+I   +   +E  +N +KL
Sbjct: 6   SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
            I    ++  G Y + V N+ G  +   ++T+ 
Sbjct: 66  TILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 82.4 bits (204), Expect = 4e-19
 Identities = 23/150 (15%), Positives = 38/150 (25%), Gaps = 42/150 (28%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
             P+  +  +     A     L   VTG    +  W + +++I       +E +      
Sbjct: 6   SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE--NGS 63

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
            L+I  A  +    Y                                 T   EN  GS  
Sbjct: 64  KLTILAARQEHCGCY---------------------------------TLLVENKLGSRQ 90

Query: 526 CTATLSLLPESEVTDVMESPRFI-KTPETA 554
               L+      V D  + P      P + 
Sbjct: 91  AQVNLT------VVDKPDPPAGTPSGPSSG 114

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
             VTG      TW      ++E + + + ++++   KL I     E+ G Y+    N +G
Sbjct: 29  GKVTGTQPITCTWMKFRKQIQESEHMKV-ENSENGSKLTILAARQEHCGCYTLLVENKLG 87

Query: 389 EAVAAATLAVEEKEESGEAP 408
              A   L V +K +     
Sbjct: 88  SRQAQVNLTVVDKPDPPAGT 107

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score =  104 bits (261), Expect = 6e-27
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVES-VST 63
           AP FI K Q     +       C++   P P + W+++   +   T+   +    +   T
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKP 111
           L I +  K+D G YT  A N  GV TC+  L V  +      P  T P
Sbjct: 75  LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR------PNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score =  101 bits (254), Expect = 6e-26
 Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 11/118 (9%)

Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
            E   AP F    +           L+  ++  P P + W R  E +  +      +   
Sbjct: 10  HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP 217
           TG   L I +   +D   Y+V AVN  G   C   L            V   P    P
Sbjct: 70  TGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD-----------VTARPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 91.7 bits (228), Expect = 2e-22
 Identities = 28/163 (17%), Positives = 40/163 (24%), Gaps = 48/163 (29%)

Query: 387 VGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
           +G      +       E   AP F    +           L+  ++  P P + W R  E
Sbjct: 1   MGHHHHHHS------HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNE 54

Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
            +  +      +   TG   L I +   +D   Y                          
Sbjct: 55  MVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWY-------------------------- 88

Query: 507 RDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK 549
                  T  A N AG  TC   L         DV   P    
Sbjct: 89  -------TVSAVNEAGVTTCNTRL---------DVTARPNQTL 115

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 88.2 bits (219), Expect = 3e-21
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 17/125 (13%)

Query: 293 SGSVTITVAEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK 349
               +     A          +V    +   +         ++  P P + W  +   ++
Sbjct: 5   HHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLE-------CQISAIPPPKLFWKRNNEMVQ 57

Query: 350 E-GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAP 408
                +++YQD  G   L I +V  ++AG Y+ +AVN  G       L V  +      P
Sbjct: 58  FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR------P 111

Query: 409 KFTKP 413
             T P
Sbjct: 112 NQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 80.9 bits (200), Expect = 1e-18
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKD 261
               AP  +   Q+  V +  +V LE + +  P P++ W +N + +          +   
Sbjct: 11  EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70

Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
               L+IK   KK  G Y +  VNEAG    +  + +T    +T+
Sbjct: 71  GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score =  102 bits (257), Expect = 2e-26
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           AP     ++   +   +    +C   G+P P + W KD   L      ++   +    L 
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLT 67

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
           I    KED G+YTC+A ++ G A   A  I+   +E
Sbjct: 68  IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 88.5 bits (220), Expect = 2e-21
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 94  LIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHT 153
           L VLE+     AP  T  L+           +  T +G P P I W++  E ++ D+G  
Sbjct: 3   LTVLERV----APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 58

Query: 154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
           ++     G   L+I     +DE +Y+ +A +  G A+  A  +
Sbjct: 59  LK----DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 85.9 bits (213), Expect = 1e-20
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIV-SKDIETKDNVTK 265
               APTI   L+        ++ +    +G P P++ WFK+ + +V    I  KD    
Sbjct: 6   LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN 65

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
           L I++  K+  G Y  +  +  G A+      I  A+ +T
Sbjct: 66  LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 37/136 (27%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
            AP  T  L+           +  T +G P P I W++  E ++ D+G  ++     G  
Sbjct: 9   VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK----DGNR 64

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
            L+I     +DE +Y                                 TC+A +V G   
Sbjct: 65  NLTIRRVRKEDEGLY---------------------------------TCQACSVLGCAK 91

Query: 526 CTATLSLLPESEVTDV 541
             A   +    E T++
Sbjct: 92  VEAFFIIEGAQEKTNL 107

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
            +G P P + W  D   + E   + +    DG   L I  V  E+ GLY+C A + +G A
Sbjct: 34  ASGNPPPQIMWFKDNETLVEDSGIVL---KDGNRNLTIRRVRKEDEGLYTCQACSVLGCA 90

Query: 391 VAAATLAVEEKEE 403
              A   +E  +E
Sbjct: 91  KVEAFFIIEGAQE 103

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  107 bits (267), Expect = 5e-26
 Identities = 46/290 (15%), Positives = 81/290 (27%), Gaps = 34/290 (11%)

Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
              + TC         + W++   E    E          S L + N T  D G Y C  
Sbjct: 16  STFVLTCSGSA----PVVWERMSQEPP-QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTH 70

Query: 82  TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ-SPATLKATVTGRPTPSICWY 140
            +  G+ T     + +   +           +  I   + +  T+   VT  P   +  +
Sbjct: 71  NDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLH 129

Query: 141 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA 200
             K ++     +                 +   ++  Y  K        +  A  V R  
Sbjct: 130 EKKGDVALPVPYD-----------HQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQ 178

Query: 201 TTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE----IVSKD 256
            +     V    T+VR        +   +TL     G      +W    KE    +    
Sbjct: 179 VSSINVSVNAVQTVVR--------QGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230

Query: 257 IETKDNVTK----LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
               D        L I     + +G Y   V     + +   ++ ITV E
Sbjct: 231 DFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 90.1 bits (223), Expect = 4e-20
 Identities = 46/326 (14%), Positives = 83/326 (25%), Gaps = 59/326 (18%)

Query: 214 IVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN--VTKLVIKQT 271
           +  P   L++   ST  L    T + +  V W +  +E   +  + +D    + L +   
Sbjct: 3   VTPPGPELVLNVSSTFVL----TCSGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNL 58

Query: 272 TKKTTGKYEIRVVNEAGEAR-TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV 330
           T   TG+Y     +  G        + I V +         + +     F +      + 
Sbjct: 59  TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGF----LPNDAEELFIFLTEITEIT 114

Query: 331 ----VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
               VT  P  +VT             + +  D                   Y C     
Sbjct: 115 IPCRVTD-PQLVVTLHEKKGD----VALPVPYDHQ------RGFSGIFEDRSYICKTTIG 163

Query: 387 VGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
             E  + A      +  S      +      +       TL   V G    +  W     
Sbjct: 164 DREVDSDAYYVYRLQVSS---INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTY--- 217

Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
                                      P+ E+   V+  +     M    RS+L I    
Sbjct: 218 ---------------------------PRKESGRLVEPVTDFLLDMPYHIRSILHIPSAE 250

Query: 507 RDQIGDVTCRAENVAGSVTCTATLSL 532
            +  G  TC              +++
Sbjct: 251 LEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 79.7 bits (196), Expect = 1e-16
 Identities = 34/298 (11%), Positives = 75/298 (25%), Gaps = 33/298 (11%)

Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS 168
           T P   ++    S   L    T   +  + W R  +E   +     +   ++   VL+++
Sbjct: 4   TPPGPELVLNVSSTFVL----TCSGSAPVVWERMSQEPPQEMAKAQDGTFSS---VLTLT 56

Query: 169 EATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDST 228
             T  D   Y     ++ G        +           +            + + + + 
Sbjct: 57  NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDA----EELFIFLTEITE 112

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG 288
           +T+    T  P   V   +   ++                  +       Y  +      
Sbjct: 113 ITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQ------RGFSGIFEDRSYICKTTIGDR 165

Query: 289 EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTGKPTPLVTWSHD 344
           E  +       +  +      + V  +           E +     V G       W++ 
Sbjct: 166 EVDSDAYYVYRLQVSS-----INVSVNAVQ--TVVRQGENITLMCIVIGNEVVNFEWTYP 218

Query: 345 GTPMKEGKEVTIYQDTDGLCK----LAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
                   E       D        L I     E++G Y+C     V +      + +
Sbjct: 219 RKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 68.2 bits (166), Expect = 8e-13
 Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 7/104 (6%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL-----HATEHYLITT 57
           +V +          V  Q +     C V G+ +    W     E        T+  L   
Sbjct: 178 QVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP 237

Query: 58  VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA--NLIVLEK 99
               S L I +   ED G YTC  T            N+ V+E 
Sbjct: 238 YHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES 281

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 28/251 (11%), Positives = 58/251 (23%), Gaps = 54/251 (21%)

Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
              V+T   +  V W        +  E+   QD      L ++ +   + G Y CT  + 
Sbjct: 16  STFVLTCSGSAPVVWERMSQEPPQ--EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDS 73

Query: 387 VGEAVA-AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK 445
            G        L +   + +            +     +  T+   VT  P   +  +  K
Sbjct: 74  RGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKK 132

Query: 446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI 505
            ++     +                 +   ++  Y                         
Sbjct: 133 GDVALPVPYD-----------HQRGFSGIFEDRSY------------------------- 156

Query: 506 TRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
                    C+       V   A             + S           V  G+++   
Sbjct: 157 --------ICKTTIGDREVDSDAYY------VYRLQVSSINVSVNAVQTVVRQGENITLM 202

Query: 566 AQVGYSERLEI 576
             V  +E +  
Sbjct: 203 CIVIGNEVVNF 213

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score =  100 bits (252), Expect = 6e-26
 Identities = 18/92 (19%), Positives = 30/92 (32%)

Query: 5  LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
          L P+ +   + +               G P PT TW    +        L+    S +++
Sbjct: 1  LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
             +  + D G Y  K  N  G       +IV
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 88.1 bits (219), Expect = 2e-21
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLV 267
            P I+   + + +    T  LE ++ G P P   W              ++ K + T + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
                +  +G Y+++V NE GE      V +
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
            PK     + +  +A     L+    G P P+  W  G           ++         
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS--STTS 59

Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
           +    A   D   Y +K  N  G  E    ++
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 77.7 bits (192), Expect = 7e-18
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
           V   G P P  TW+   +      E+ +         +        ++G Y     N +G
Sbjct: 24  VDFIGAPDPTATWTVGDSGAALAPELLV-DAKSSTTSIFFPSAKRADSGNYKLKVKNELG 82

Query: 389 EAVAAATLAVE 399
           E  A   + V+
Sbjct: 83  EDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 14/124 (11%), Positives = 25/124 (20%), Gaps = 35/124 (28%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
            PK     + +  +A     L+    G P P+  W  G           ++         
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS--STTS 59

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
           +    A   D   Y                                   + +N  G    
Sbjct: 60  IFFPSAKRADSGNY---------------------------------KLKVKNELGEDEA 86

Query: 527 TATL 530
              +
Sbjct: 87  IFEV 90

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score =  100 bits (251), Expect = 9e-26
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
          AP F   ++     + Q  +  C V G P+P +TW  +G  +             V+ L 
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE---AGVAELH 67

Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIV 96
          I +   ED G YTC A N  G  +CSA + V
Sbjct: 68 IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 89.3 bits (222), Expect = 8e-22
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
            AP F+  LK           L+ +V G P P I W    + I              G  
Sbjct: 10  VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-----EAGVA 64

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
            L I +A P+D   Y+  A N  G+  C A +
Sbjct: 65  ELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 23/91 (25%), Positives = 36/91 (39%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLV 267
           +  AP+    L+   V +     L+    GTP P + W  NG+ I       +  V +L 
Sbjct: 8   MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELH 67

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           I+    +  G Y     N  G+   S  VT+
Sbjct: 68  IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 30/140 (21%), Positives = 44/140 (31%), Gaps = 44/140 (31%)

Query: 392 AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD 451
           ++ +  +E       AP F+  LK           L+ +V G P P I W    + I   
Sbjct: 2   SSGSSGMEV------APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA 55

Query: 452 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG 511
                      G   L I +A P+D   Y                               
Sbjct: 56  RSTC-----EAGVAELHIQDALPEDHGTY------------------------------- 79

Query: 512 DVTCRAENVAGSVTCTATLS 531
             TC AEN  G V+C+A ++
Sbjct: 80  --TCLAENALGQVSCSAWVT 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 78.9 bits (195), Expect = 4e-18
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
           V G P P +TW  +G P++  +         G+ +L I +  PE+ G Y+C A N +G+ 
Sbjct: 35  VRGTPVPRITWLLNGQPIQYAR----STCEAGVAELHIQDALPEDHGTYTCLAENALGQV 90

Query: 391 VAAATLAV 398
             +A + V
Sbjct: 91  SCSAWVTV 98

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 98.9 bits (247), Expect = 3e-25
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTL 64
                 +I   V  +     + CK+E +   T +TW     +L  +E Y IT  + V+ L
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
            + + TK D G Y CK  N  G  +  A L V    E
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 84.3 bits (209), Expect = 5e-20
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 3/93 (3%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGEC 163
               +  +   + E          +      + + WY G  ++     + + +    G  
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED--GVA 58

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
           +L + + T  D+  Y  K VN +G     A L 
Sbjct: 59  ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 80.4 bits (199), Expect = 9e-19
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
               E   V    ++E++                    +  VTW      ++  ++  I 
Sbjct: 11  AVGEEGGHVKYVCKIENYD------------------QSTQVTWYFGVRQLENSEKYEIT 52

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEE 403
            + DG+  L + ++   + G Y C  VN  GE  + A L V+   E
Sbjct: 53  YE-DGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 73.1 bits (180), Expect = 3e-16
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKD---IETKDNVTKL 266
              +   +   +  +   V    +        +V W+   +++ + +   I  +D V  L
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
            +K  TK   G Y  +VVN+ GE  +   + +
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 72.0 bits (177), Expect = 9e-16
 Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 36/126 (28%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGEC 465
               +  +   + E          +      + + WY G  ++     + + +    G  
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED--GVA 58

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
           +L + + T  D+  Y                                  C+  N  G  +
Sbjct: 59  ILYVKDITKLDDGTY---------------------------------RCKVVNDYGEDS 85

Query: 526 CTATLS 531
             A L 
Sbjct: 86  SYAELF 91

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  104 bits (259), Expect = 2e-24
 Identities = 49/417 (11%), Positives = 108/417 (25%), Gaps = 88/417 (21%)

Query: 14  QPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT--------------- 57
           + VV  ++      TC           W+               T               
Sbjct: 1   KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60

Query: 58  --VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV 115
              +    L I N   ED   Y C+  +          L+V     +            +
Sbjct: 61  LWDQGNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTAN--------SDTHL 108

Query: 116 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE 175
           +       TL        +PS+     + + +                 LS+S+   QD 
Sbjct: 109 LQG--QSLTLTLESPPGSSPSVQCRSPRGKNIQGGK------------TLSVSQLELQDS 154

Query: 176 AVYSVKAVNTFGRAECRANLV---LRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
             ++   +    + E + ++V    +KA++I   +  E      PL   +     +  L 
Sbjct: 155 GTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELW 214

Query: 233 AEYTGTPTP-----------EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
            +     +            EV   +  ++   +  +       L         +G   +
Sbjct: 215 WQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTL 274

Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
            +  + G+     ++ +  A      +   V    +                 P  +++ 
Sbjct: 275 ALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTS-----------------PKLMLSL 317

Query: 342 SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
             +    K  K                  V    AG++ C   +  G+ +  + + V
Sbjct: 318 KLENKEAKVSKREKAVW------------VLNPEAGMWQCLLSDS-GQVLLESNIKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 85.2 bits (210), Expect = 4e-18
 Identities = 47/382 (12%), Positives = 115/382 (30%), Gaps = 72/382 (18%)

Query: 227 STVTLEAEYTGTPTPEVKWFKNGKEIV--------------------SKDIETKDNVTKL 266
            TV L    +   + +  W  + +  +                    S+          L
Sbjct: 10  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
           +IK    + +  Y   V ++  E +    +   +    T   D  +    + +       
Sbjct: 70  IIKNLKIEDSDTYICEVEDQKEEVQL---LVFGL----TANSDTHLLQGQSLTLT----- 117

Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
             +      +P V          +G +            L++S++  +++G ++CT +  
Sbjct: 118 --LESPPGSSPSVQCRSPRGKNIQGGKT-----------LSVSQLELQDSGTWTCTVLQN 164

Query: 387 VGEAVAAATLAVEEKEES--------GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS 438
             +      + V   +++        GE  +F+ PL   + +      L        +  
Sbjct: 165 QKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSK 224

Query: 439 IC----WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQ--DEAVYSVKASSTETKIM 492
                     +  +                  L++ +A PQ       ++   +   K+ 
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284

Query: 493 TDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE 552
            + N  V+  +++ +    ++TC    V G  +    LSL  E++   V +  + +    
Sbjct: 285 QEVNLVVMRATQLQK----NLTCE---VWGPTSPKLMLSLKLENKEAKVSKREKAVWVLN 337

Query: 553 TA------KVMDGQSVLFTAQV 568
                    + D   VL  + +
Sbjct: 338 PEAGMWQCLLSDSGQVLLESNI 359

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 21/206 (10%), Positives = 44/206 (21%), Gaps = 69/206 (33%)

Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM---------------EFNPT 461
           V+ +      L  T + + +    W    +  +  N  +                     
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKI------------------------------ 491
            G   L I     +D   Y  +    + ++                              
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPG 123

Query: 492 -------MTDGNR-----SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVT 539
                   +   +       L +S++     G  TC        V     + +       
Sbjct: 124 SSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV------- 176

Query: 540 DVMESPRFIKTPETAKVMDGQSVLFT 565
                  F K        +G+ V F+
Sbjct: 177 -----LAFQKASSIVYKKEGEQVEFS 197

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  101 bits (253), Expect = 2e-24
 Identities = 42/298 (14%), Positives = 85/298 (28%), Gaps = 49/298 (16%)

Query: 14  QPVVS--------HQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTL 64
           + V++         QE+     C+V   P   +  W  +GT              S  + 
Sbjct: 1   KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ----------TSTPSY 50

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
            I + +  D G Y C+    G        L +             +    V  E +    
Sbjct: 51  RITSASVNDSGEYRCQRGLSGRSD--PIQLEIHR------GWLLLQVSSRVFTEGEP-LA 101

Query: 125 LKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
           L+      +   ++ +YR        NG   +F        L+I +        Y    +
Sbjct: 102 LRCHAWKDKLVYNVLYYR--------NGKAFKFFHWNSN--LTILKTNISHNGTYHCSGM 151

Query: 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV 243
                     ++ ++          L    ++       + + + VTL  E         
Sbjct: 152 GKHRYTSAGISVTVK---------ELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPG 202

Query: 244 KWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART-SGSVTITV 300
                   + SK +  ++  ++  I    ++ +G Y      E G     S  + + V
Sbjct: 203 LQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 95.8 bits (238), Expect = 3e-22
 Identities = 50/321 (15%), Positives = 86/321 (26%), Gaps = 79/321 (24%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
             I      + V ++ TVTL  E    P     +WF NG    +             I  
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST-------PSYRITS 54

Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV 330
            +   +G+Y  +          S  + + +     +            S + F   EP+ 
Sbjct: 55  ASVNDSGEYRCQRGLSGR----SDPIQLEIHRGWLL---------LQVSSRVFTEGEPLA 101

Query: 331 VT-----GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
           +       K    V +  +G   K       +   +    L I +    + G Y C+ + 
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAFK-------FFHWNS--NLTILKTNISHNGTYHCSGMG 152

Query: 386 PVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRG 444
                 A  ++ V+E      AP     +   + E  +  TL          P +  Y  
Sbjct: 153 KHRYTSAGISVTVKELF---PAPVLNASVTSPLLEG-NLVTLSCETKLLLQRPGLQLYFS 208

Query: 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504
                     T+    T+ E    I  A  +D  +Y                        
Sbjct: 209 FY----MGSKTLRGRNTSSE--YQILTARREDSGLY------------------------ 238

Query: 505 ITRDQIGDVTCRAENVAGSVT 525
                     C A    G+V 
Sbjct: 239 ---------WCEAATEDGNVL 250

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 85.4 bits (211), Expect = 9e-19
 Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 20/196 (10%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESV 61
           E+     + ++   V  + +P    C       +  + + ++G                 
Sbjct: 79  EIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK--------FFHWN 130

Query: 62  STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
           S L I+       G Y C         +   ++ V E      AP     +   + E  +
Sbjct: 131 SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF---PAPVLNASVTSPLLEG-N 186

Query: 122 PATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
             TL          P +  Y            T+    T+ E    I  A  +D  +Y  
Sbjct: 187 LVTLSCETKLLLQRPGLQLYFSFY----MGSKTLRGRNTSSE--YQILTARREDSGLYWC 240

Query: 181 KAVNTFGRAECRANLV 196
           +A    G    R+  +
Sbjct: 241 EAATEDGNVLKRSPEL 256

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 83.0 bits (205), Expect = 6e-18
 Identities = 41/276 (14%), Positives = 78/276 (28%), Gaps = 55/276 (19%)

Query: 122 PATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
             TL   V   P   S  W+                          I+ A+  D   Y  
Sbjct: 18  TVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------------YRITSASVNDSGEY-- 63

Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE-YTGTP 239
                     C+  L  R      +  +     +++   + +  +   + L    +    
Sbjct: 64  ---------RCQRGLSGRSDPI--QLEIHRGWLLLQV-SSRVFTEGEPLALRCHAWKDKL 111

Query: 240 TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
              V +++NGK       +     + L I +T     G Y    + +     TS  +++T
Sbjct: 112 VYNVLYYRNGKAF-----KFFHWNSNLTILKTNISHNGTYHCSGMGKHRY--TSAGISVT 164

Query: 300 VAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-------GKPTPLVTWSHDGTPMKEGK 352
           V E     +     + P       +    V ++        +P   + +S         K
Sbjct: 165 VKELFPAPVLNASVTSPL------LEGNLVTLSCETKLLLQRPGLQLYFS----FYMGSK 214

Query: 353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
            +     +       I     E++GLY C A    G
Sbjct: 215 TLRGRNTSSEYQ---ILTARREDSGLYWCEAATEDG 247

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 24/237 (10%), Positives = 52/237 (21%), Gaps = 72/237 (30%)

Query: 331 VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
           V   P      W  +GT  +                  I+     ++G Y C        
Sbjct: 25  VLHLPGSSSTQWFLNGTATQTSTP-----------SYRITSASVNDSGEYRCQRGLSGRS 73

Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEI 448
                 +               +    V  E +    L+      +   ++ +YR     
Sbjct: 74  DPIQLEIH--------RGWLLLQVSSRVFTEGEP-LALRCHAWKDKLVYNVLYYR----- 119

Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
              NG   +F        L+I +        Y                            
Sbjct: 120 ---NGKAFKFFHWNSN--LTILKTNISHNGTY---------------------------- 146

Query: 509 QIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
                 C         +   ++++         +     +    T+ +++G  V  +
Sbjct: 147 -----HCSGMGKHRYTSAGISVTVK-------ELFPAPVLNASVTSPLLEGNLVTLS 191

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  102 bits (255), Expect = 5e-24
 Identities = 47/334 (14%), Positives = 78/334 (23%), Gaps = 53/334 (15%)

Query: 6   APRFIEKIQPVVSHQE-QPALFTCKVEGHP----LPTMTWQKDGTELHAT---------- 50
            P  + ++   +        +  C          +  +TWQK                  
Sbjct: 13  DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72

Query: 51  --------EHYLITTVESVSTLEIINPTKEDIGVYTCKA-TNIGGVATCSANLIVLEKEE 101
                       +    +  T+ +     ED GVY C+  T   G      NL V+ K  
Sbjct: 73  SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK-- 130

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATV------TGRPTPSICWYRGKEEILPDNGHTME 155
               P         +  A+     K  V       G+P   + W    +           
Sbjct: 131 ----PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186

Query: 156 FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI- 214
               T      +  +    +   +        R +    L            V   P + 
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTL-----------NVQYEPEVT 235

Query: 215 VRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTK 273
           +         +   V L  +    P   E  W      +         N T         
Sbjct: 236 IEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ--NRTLFFKGPINY 293

Query: 274 KTTGKYEIRVVNEAGEARTSGSVTITVAEAETVM 307
              G Y     N  G    SG V + + EA  + 
Sbjct: 294 SLAGTYICEATNPIGT--RSGQVEVNITEAAALE 325

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 89.0 bits (220), Expect = 2e-19
 Identities = 47/327 (14%), Positives = 83/327 (25%), Gaps = 51/327 (15%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTP----SICWYR----------------GKEE 145
            +  +    +     +   L  +            + W +                G   
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF-GRAECRANLVLRKATTID 204
           + P         P+  +  + +S    +DE VY  +      G  E + NL +       
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKP--- 131

Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT 264
               +E    V   +     K    T  +   G P   V W    K           N T
Sbjct: 132 -TNWIEGTQAVLRAKKGQDDKVLVATCTSA-NGKPPSVVSWETRLKGEAEYQEIRNPNGT 189

Query: 265 -----KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTAS 319
                +  +  + +         V       + S  +T+ V     V     +E      
Sbjct: 190 VTVISRYRLVPSREAHQQSLACIVNYHMDRFKES--LTLNVQYEPEV----TIEGFDG-- 241

Query: 320 FQWFIHSEPV----VVTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPE 374
             W++    V         P      W+     + +G E         L       +   
Sbjct: 242 -NWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ----NRTL--FFKGPINYS 294

Query: 375 NAGLYSCTAVNPVGEAVAAATLAVEEK 401
            AG Y C A NP+G       + + E 
Sbjct: 295 LAGTYICEATNPIGTRSGQVEVNITEA 321

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 83.6 bits (206), Expect = 1e-17
 Identities = 43/375 (11%), Positives = 89/375 (23%), Gaps = 92/375 (24%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPE----VKWFKNGKEI------------VSK 255
             +V+   ++     + V L   +           V W K+                VS 
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 256 DIETKDNVT---------KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
               ++ V           + + +   +  G Y           R    + +TV    T 
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVMAKPTN 133

Query: 307 MMDVRVESHPTASFQWFIHSEPVVVT-----GKPTPLVTWSHDGTPMKEGKEVTIYQDTD 361
            +     +      +     + +V T     GKP  +V+W        E +E+     T 
Sbjct: 134 WI---EGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTV 190

Query: 362 GLC-KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFT-KPLKPVIA 419
            +  +  +      +    +C     +     + TL V+        P+ T +       
Sbjct: 191 TVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY------EPEVTIEGFDGNWY 244

Query: 420 EAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 478
             +    L       P  +   W      +                              
Sbjct: 245 LQRMDVKLTCKADANPPATEYHWTTLNGSLPKG--------------------------- 277

Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEV 538
                        +   NR++     I     G   C A N  G+ +    +        
Sbjct: 278 -------------VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEV-------- 316

Query: 539 TDVMESPRFIKTPET 553
            ++ E+         
Sbjct: 317 -NITEAAALEHHHHH 330

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 81.7 bits (201), Expect = 4e-17
 Identities = 29/225 (12%), Positives = 54/225 (24%), Gaps = 33/225 (14%)

Query: 4   VLAPRFIEKIQPVVSHQE----QPALFTCKV-EGHPLPTMTWQKDGTELHATEHYL--IT 56
                +IE  Q V+  ++    +  + TC    G P   ++W+         +       
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188

Query: 57  TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFT-KPLKPV 115
           TV  +S   ++   +       C           S  L V         P+ T +     
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ------YEPEVTIEGFDGN 242

Query: 116 IAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
               +    L       P  +   W          NG   +        +          
Sbjct: 243 WYLQRMDVKLTCKADANPPATEYHWTT-------LNGSLPKGVEAQNRTLFFKGPINYSL 295

Query: 175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
              Y  +A N  G    +  +            + EA  +     
Sbjct: 296 AGTYICEATNPIGTRSGQVEV-----------NITEAAALEHHHH 329

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 62.5 bits (151), Expect = 1e-10
 Identities = 32/284 (11%), Positives = 60/284 (21%), Gaps = 68/284 (23%)

Query: 297 TITVAEAETVMMDVRV----ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGK 352
           ++       V++         S       W   +      G    +  ++          
Sbjct: 23  SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTN-----GSKQNVAIYNPSMGVSVLAP 77

Query: 353 ---EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN-PVGEAVAAATLAVEEKEESGEAP 408
               V   + +     + +S +  E+ G+Y C     P G   +   L V  K      P
Sbjct: 78  YRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK------P 131

Query: 409 KFTKPLKPVIAEAQSPATLKATV------TGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
                    +  A+     K  V       G+P   + W    +               T
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191

Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
                                              S   +          + C       
Sbjct: 192 V---------------------------------ISRYRLVPSREAHQQSLACIVNYHMD 218

Query: 523 SVTCTATLSLLPESEVTDVMESPRF-IKTPETAKVMDGQSVLFT 565
               + TL         +V   P   I+  +    +    V  T
Sbjct: 219 RFKESLTL---------NVQYEPEVTIEGFDGNWYLQRMDVKLT 253

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 94.4 bits (235), Expect = 1e-23
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 6   APRFIEKIQPVVSHQE----QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES- 60
           AP +    +               F C   G+P+PTM W K+G E           V + 
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63

Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
             +L + +    D G YTC   N  G    + +L V+
Sbjct: 64  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 79.4 bits (196), Expect = 2e-18
 Identities = 17/68 (25%), Positives = 26/68 (38%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
             G P P + W  +G   K+   +  Y+  +    L +  V P + G Y+C   N  G  
Sbjct: 32  AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 91

Query: 391 VAAATLAV 398
                L V
Sbjct: 92  NHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 5/98 (5%)

Query: 102 SGEAPKFTKPLKP----VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157
           +  AP +T   K         A +    +    G P P++ W +  +E   +      + 
Sbjct: 1   NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-HRIGGYK 59

Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
                  L +    P D+  Y+    N +G      +L
Sbjct: 60  VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 210 EAPTIVRPLQALL----VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKD 261
            AP      +       VP  +TV       G P P ++W KNGKE   +      + ++
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
               L+++       G Y   V NE G    +  + +
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 70.2 bits (172), Expect = 4e-15
 Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 38/134 (28%)

Query: 404 SGEAPKFTKPLKP----VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 459
           +  AP +T   K         A +    +    G P P++ W +  +E   +      + 
Sbjct: 1   NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-HRIGGYK 59

Query: 460 PTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN 519
                  L +    P D+  Y                                 TC  EN
Sbjct: 60  VRNQHWSLIMESVVPSDKGNY---------------------------------TCVVEN 86

Query: 520 VAGSVTCTATLSLL 533
             GS+  T  L ++
Sbjct: 87  EYGSINHTYHLDVV 100

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 94.0 bits (234), Expect = 2e-23
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 7/101 (6%)

Query: 4  VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT-----V 58
          V     I  ++   S           V+G+P P + W  +G  L+ +++           
Sbjct: 1  VHFAPTITFLESPTSDHH--WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58

Query: 59 ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
          E    L++ NPT  + G YT  A N  G      +   +  
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 4/78 (5%)

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTI----YQDTDGLCKLAISEVFPENAGLYSCTA 383
           P  V G P P + W ++G  + E K +         T+    L +      N G Y+  A
Sbjct: 22  PFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIA 81

Query: 384 VNPVGEAVAAATLAVEEK 401
            N  G+     +      
Sbjct: 82  KNEYGKDEKQISAHFMGW 99

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF---NPTTG 161
           AP  T    P    +     +  TV G P P++ W+     +        +    N T  
Sbjct: 4   APTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID 204
              L +   T  +   Y++ A N +G+ E + +        ID
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 11/99 (11%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS--------KDIET 259
           V  APTI           D    +     G P P ++WF NG  +               
Sbjct: 1   VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
            +    L +   T    G Y +   NE G+     S   
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 21/144 (14%), Positives = 32/144 (22%), Gaps = 48/144 (33%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF---NPTTG 463
           AP  T    P    +     +  TV G P P++ W+     +        +    N T  
Sbjct: 4   APTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
              L +   T  +   Y                                 T  A+N  G 
Sbjct: 61  HGCLQLDNPTHMNNGDY---------------------------------TLIAKNEYGK 87

Query: 524 VTCTATLSLLPESEVTDVMESPRF 547
                +            M  P  
Sbjct: 88  DEKQISA---------HFMGWPGI 102

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 94.5 bits (235), Expect = 2e-23
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV---- 61
            PR +   +P +  +         V G+P PT+ W  +G  L  ++   +   +      
Sbjct: 8   PPRVVSLEEPELRLEHC---IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64

Query: 62  STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLK 113
             L    PT  + G YT  A N  G A  + N   L++    +    T P+ 
Sbjct: 65  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPIT 116

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 75.6 bits (186), Expect = 8e-17
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGL---CKLAISEVFPENAGLYSCTAV 384
             VV G P P + W H+G P++E K + +    +G      L  ++    N G Y+  A 
Sbjct: 26  EFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAK 85

Query: 385 NPVGEAVAAATLAVEEKEESGEAPKFTKPLK 415
           NP+G A         ++    +    T P+ 
Sbjct: 86  NPLGTANQTINGHFLKEPFPVDEVSPTPPIT 116

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 71.0 bits (174), Expect = 4e-15
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG-- 161
             P+     +P +        ++  V G P P++ W    + +       +E+       
Sbjct: 7   YPPRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV 215
           E  L  ++ T  +   Y++ A N  G A    N    K            P  V
Sbjct: 64  EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 67.1 bits (164), Expect = 8e-14
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 10/101 (9%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-------VSKDIETK 260
           V   P +V   +  L        +E    G P P + W  NG+ +       V    E +
Sbjct: 5   VYYPPRVVSLEEPELR---LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61

Query: 261 DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
            +   L+  + T    G Y +   N  G A  + +      
Sbjct: 62  ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 61.4 bits (149), Expect = 8e-12
 Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 38/130 (29%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG-- 463
             P+     +P +        ++  V G P P++ W    + +       +E+       
Sbjct: 7   YPPRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
           E  L  ++ T  +   Y                                 T  A+N  G+
Sbjct: 64  EGCLLFNKPTHYNNGNY---------------------------------TLIAKNPLGT 90

Query: 524 VTCTATLSLL 533
              T     L
Sbjct: 91  ANQTINGHFL 100

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 93.3 bits (232), Expect = 6e-23
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            P   +         +   + +C   G P+PT+ W+KDG  +   +   I  +E+   L+
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR-IKQLEN-GVLQ 65

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKP 111
           I      D G YTC A+   G AT SA + V E     + P+ T P
Sbjct: 66  IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDP 111

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 73.3 bits (180), Expect = 6e-16
 Identities = 24/130 (18%), Positives = 35/130 (26%), Gaps = 21/130 (16%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           S   P   +              L    TG P P+I W +    +   +    +      
Sbjct: 5   SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV- 63

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL 221
              L I  A   D   Y+  A    G A   A +            V E    V+P    
Sbjct: 64  ---LQIRYAKLGDTGRYTCIASTPSGEATWSAYI-----------EVQEFGVPVQP---- 105

Query: 222 LVPKDSTVTL 231
             P+ +   L
Sbjct: 106 --PRPTDPNL 113

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 70.6 bits (173), Expect = 5e-15
 Identities = 23/149 (15%), Positives = 34/149 (22%), Gaps = 46/149 (30%)

Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           S   P   +              L    TG P P+I W +    +   +    +      
Sbjct: 5   SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV- 63

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
              L I  A   D   Y                                 TC A   +G 
Sbjct: 64  ---LQIRYAKLGDTGRY---------------------------------TCIASTPSGE 87

Query: 524 VTCTATLSLLPESEVTDVMESPRFIKTPE 552
            T +A +          V E    ++ P 
Sbjct: 88  ATWSAYIE---------VQEFGVPVQPPR 107

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNVTKLV 267
             P I +      V  D T  L    TG+P P + W K+G  + ++D  I+  +N   L 
Sbjct: 7   GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV-LQ 65

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           I+      TG+Y       +GEA  S  + +  
Sbjct: 66  IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE 98

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.1 bits (164), Expect = 8e-14
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKE-VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
            TG P P + W  DG  +      +   ++      L I      + G Y+C A  P GE
Sbjct: 32  ATGSPVPTILWRKDGVLVSTQDSRIKQLENGV----LQIRYAKLGDTGRYTCIASTPSGE 87

Query: 390 AVAAATLAVEEKEESGEAPKFTKP 413
           A  +A + V+E     + P+ T P
Sbjct: 88  ATWSAYIEVQEFGVPVQPPRPTDP 111

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 92.5 bits (230), Expect = 7e-23
 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 1  MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES 60
                P  ++         +  AL  CK  G PLP ++W K+G      +     T++ 
Sbjct: 3  SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRA--TIQE 60

Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
            TL+I N    D G YTC AT+  G  + SA L V E
Sbjct: 61 QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNVTKLV 267
             P I++      +  D T  L+ + TG P P + W K G     +D     ++  T L 
Sbjct: 7   GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT-LQ 65

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
           IK      TG Y     + +GE   S  + +T +
Sbjct: 66  IKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 4/94 (4%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           S   P   +            A LK   TG P P I W +        +           
Sbjct: 5   SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE---- 60

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
           +  L I      D   Y+  A ++ G     A L
Sbjct: 61  QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 21/128 (16%), Positives = 29/128 (22%), Gaps = 37/128 (28%)

Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           S   P   +            A LK   TG P P I W +        +           
Sbjct: 5   SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE---- 60

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
           +  L I      D   Y                                 TC A + +G 
Sbjct: 61  QGTLQIKNLRISDTGTY---------------------------------TCVATSSSGE 87

Query: 524 VTCTATLS 531
            + +A L 
Sbjct: 88  TSWSAVLD 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 331 VTGKPTPLVTWSHDGTP-MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
            TG P P+++W  +G          TI +       L I  +   + G Y+C A +  GE
Sbjct: 32  ATGDPLPVISWLKEGFTFPGRDPRATIQEQGT----LQIKNLRISDTGTYTCVATSSSGE 87

Query: 390 AVAAATLAVEE 400
              +A L V E
Sbjct: 88  TSWSAVLDVTE 98

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 97.9 bits (243), Expect = 7e-23
 Identities = 46/312 (14%), Positives = 76/312 (24%), Gaps = 42/312 (13%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
            E   P        ++         TC         + W          E+         
Sbjct: 8   GEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVEN-------KK 56

Query: 62  STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
           +            G YTC  +N     T S  + V +        K      P+  +  S
Sbjct: 57  NEWIQEKAEATRTGTYTCSNSN---GLTSSIYVFVRDP------AKLFLVGLPLFGKEDS 107

Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
            A ++  +T              + LP +      NP  G  +   +             
Sbjct: 108 DALVRCPLTDPQVSQYSLIECDGKSLPTDLT-FVPNPKAG--ITIKNVKRAYHRLCVRCA 164

Query: 182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP 241
           A    G         L+    I        P +  P  + L+ K  T T+        T 
Sbjct: 165 AQRD-GTWLHSDKFTLKVREAIKAI-----PVVSVPETSHLLKKGDTFTVVCTIKDVSTS 218

Query: 242 -EVKWFKNGKEIVSKDIETKDNVTK----------LVIKQTTKKTTGKYEIRVVNEAGEA 290
               W K   +         ++  +          L I       +G +     N  G A
Sbjct: 219 VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA 278

Query: 291 RTSGSVTITVAE 302
               + T+ V E
Sbjct: 279 NV--TTTLKVVE 288

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 96.0 bits (238), Expect = 4e-22
 Identities = 45/313 (14%), Positives = 78/313 (24%), Gaps = 43/313 (13%)

Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
                P        +I EA    +L           + W                     
Sbjct: 8   GEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKN------ 57

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
                   +A       Y+           C  +  L  +  +    V +   +      
Sbjct: 58  ---EWIQEKAEATRTGTYT-----------CSNSNGLTSSIYVF---VRDPAKLFLVGLP 100

Query: 221 LLVPKDSTVTLEAEYTGTPTPEVKWFK-NGKEIVSKDIETKDNVTKLVIKQTTKKTTGKY 279
           L   +DS   +    T     +    + +GK + +      +    + IK   +      
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLC 160

Query: 280 EIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTGKP 335
                   G    S   T+ V EA   +  V V        +     +       +    
Sbjct: 161 VRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKK----GDTFTVVCTIKDVS 216

Query: 336 TPL-VTWSHDGTPMKEGKEVTIYQDTDGLCK------LAISEVFPENAGLYSCTAVNPVG 388
           T +   W       +   +V       G         L IS    +++G++ C A N  G
Sbjct: 217 TSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFG 276

Query: 389 EAVAAATLAVEEK 401
            A    TL V EK
Sbjct: 277 SANVTTTLKVVEK 289

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 82.9 bits (204), Expect = 1e-17
 Identities = 48/330 (14%), Positives = 89/330 (26%), Gaps = 57/330 (17%)

Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK 265
           P     P+I      L+V    T++L           V+W          +    +   +
Sbjct: 7   PGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVE----NKKNE 58

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV---MMDVRVESHPTASFQW 322
            + ++     TG Y     N         S+ + V +   +    + +  +    A    
Sbjct: 59  WIQEKAEATRTGTYTCSNSNGLTS-----SIYVFVRDPAKLFLVGLPLFGKEDSDALV-- 111

Query: 323 FIHSEPVVVTGKPTPLVTWSH-DGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
                   +T       +    DG  +       +     G+     +     +     C
Sbjct: 112 -----RCPLTDPQVSQYSLIECDGKSLPTDLTF-VPNPKAGI--TIKNVKRAYHRLCVRC 163

Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SIC 440
            A    G  + +    ++ +E     P  + P    + +     T+  T+    T  +  
Sbjct: 164 AAQRD-GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSM 222

Query: 441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL 500
           W +                              PQ + +  VK +S          +  L
Sbjct: 223 WLKM----------------------------NPQPQHIAQVKHNSWHRGDFNYERQETL 254

Query: 501 LISKITRDQIGDVTCRAENVAGSVTCTATL 530
            IS    D  G   C A N  GS   T TL
Sbjct: 255 TISSARVDDSGVFMCYANNTFGSANVTTTL 284

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 69.0 bits (168), Expect = 4e-13
 Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 8/101 (7%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTEL-------HATEHYLITTV 58
           P         +  +       C ++         W K   +        H + H      
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNY 248

Query: 59  ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
           E   TL I +   +D GV+ C A N  G A  +  L V+EK
Sbjct: 249 ERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 65.1 bits (158), Expect = 8e-12
 Identities = 23/240 (9%), Positives = 61/240 (25%), Gaps = 59/240 (24%)

Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
           + + +T      V W+      +  +            +    +      G Y+C+  N 
Sbjct: 28  DTLSLTCIDPDFVRWTFKTYFNEMVENKKN--------EWIQEKAEATRTGTYTCSNSNG 79

Query: 387 VGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE 446
           +  ++    + V +        K      P+  +  S A ++  +T              
Sbjct: 80  LTSSI---YVFVRDP------AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDG 130

Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
           + LP +                                       + +    + + +   
Sbjct: 131 KSLPTDLT------------------------------------FVPNPKAGITIKNVKR 154

Query: 507 RDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMES-PRFIKTPETAKVMDGQSVLFT 565
                 V C A+   G+   +   +L     V + +++ P       +  +  G +    
Sbjct: 155 AYHRLCVRCAAQR-DGTWLHSDKFTLK----VREAIKAIPVVSVPETSHLLKKGDTFTVV 209

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 95.9 bits (238), Expect = 2e-22
 Identities = 43/300 (14%), Positives = 79/300 (26%), Gaps = 43/300 (14%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGTELHATEHYLITTVES 60
           VL     + + P V   +      C ++G        +        L+ T  Y   +  +
Sbjct: 1   VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 60

Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
            +++  +    E     TC              + +         P     L        
Sbjct: 61  KASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIY------SFPAPNVILTKPEVSEG 113

Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
           +  T+       P   +       + L                 L +      +   +S 
Sbjct: 114 TEVTV--KCEAHPRAKVTLNGVPAQPLGPRAQ------------LLLKATPEDNGRSFSC 159

Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL--QALLVPKDSTVTLEAEYTGT 238
            A             ++ K  T  + RVL  P +           P++S  T   +  G 
Sbjct: 160 SATLEVA------GQLIHKNQTR-ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 212

Query: 239 PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           P PE+K  K+G   +                  T+   G Y  R  +  GE     +V +
Sbjct: 213 PLPELKCLKDGTFPLPIG----------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 77.4 bits (190), Expect = 5e-16
 Identities = 40/291 (13%), Positives = 82/291 (28%), Gaps = 44/291 (15%)

Query: 114 PVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 172
           P + E  +  T+  ++ G  P      +    +   +   T   +  + +  +S++ A  
Sbjct: 12  PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AED 70

Query: 173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
           +     +   +      E    +            +   P     L    V + + VT++
Sbjct: 71  EGTQRLTCAVILGNQSQETLQTV-----------TIYSFPAPNVILTKPEVSEGTEVTVK 119

Query: 233 AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
            E    P  +V       + +    +       L++K T +     +      E      
Sbjct: 120 CE--AHPRAKVTLNGVPAQPLGPRAQ-------LLLKATPEDNGRSFSCSATLEVAGQLI 170

Query: 293 SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV----VTGKPTPLVTWSHDGTPM 348
             + T  +     V+   R++         +  +          G P P +    DGT  
Sbjct: 171 HKNQTREL----RVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226

Query: 349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
                         L       V  +  G Y C A +  GE     T+ V 
Sbjct: 227 --------------LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 67.4 bits (164), Expect = 1e-12
 Identities = 51/327 (15%), Positives = 82/327 (25%), Gaps = 75/327 (22%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKDIETKDNV--TKL 266
             P +V P + L V    TV    +        +V      + +        D+      
Sbjct: 5   TPPQLVSP-RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 63

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
           V      + T +    V+       T  +VTI    A  V   +  +   +         
Sbjct: 64  VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV---ILTKPEVSEG------- 113

Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
             V V  +  P    + +G P          Q      +L +     +N   +SC+A   
Sbjct: 114 TEVTVKCEAHPRAKVTLNGVPA---------QPLGPRAQLLLKATPEDNGRSFSCSATLE 164

Query: 387 VGEAVAAATLAVEEKEESGEAPKFTKPLKP--VIAEAQSPATLKATVTGRPTPSICWYRG 444
           V   +       E        P+  +   P        S  T      G P P +   + 
Sbjct: 165 VAGQLIHKNQTREL--RVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD 222

Query: 445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK 504
               LP                                                      
Sbjct: 223 GTFPLPIG------------------------------------------------ESVT 234

Query: 505 ITRDQIGDVTCRAENVAGSVTCTATLS 531
           +TRD  G   CRA +  G VT   T++
Sbjct: 235 VTRDLEGTYLCRARSTQGEVTREVTVN 261

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 62.0 bits (150), Expect = 8e-11
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 6   APRFIEKIQP--VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
            PR  E+  P      +       C+  G+PLP +   KDGT               +  
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP-------------LPI 229

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
            E +  T++  G Y C+A +  G  T    + VL
Sbjct: 230 GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 23/234 (9%), Positives = 42/234 (17%), Gaps = 62/234 (26%)

Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393
                V  +     +     VT   D+             E     +C  +         
Sbjct: 33  VSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 90

Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG 453
            T+ +         P     L        +  T+       P   +       + L    
Sbjct: 91  QTVTIYS------FPAPNVILTKPEVSEGTEVTV--KCEAHPRAKVTLNGVPAQPL---- 138

Query: 454 HTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDV 513
                                                    G R+ LL+     D     
Sbjct: 139 -----------------------------------------GPRAQLLLKATPEDNGRSF 157

Query: 514 TCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIK--TPETAKVMDGQSVLFT 565
           +C A                 ++    V+  PR  +   P      +       
Sbjct: 158 SCSATLEVAGQLIHKN-----QTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 206

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 90.9 bits (226), Expect = 2e-22
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           +     +++  + H        C++      ++ W +DG +L  +    IT       +E
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITG----EEVE 57

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
           + +    D G+Y C  ++  G  T   ++ V +   SG
Sbjct: 58  VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
           +       + W  DG  + E     I  +      + + +  P ++GLY+C   +P G  
Sbjct: 27  LRDDV-QSINWLRDGVQLAESNRTRITGEE-----VEVQDSVPADSGLYACVTSSPSGSD 80

Query: 391 VAAATLAVEEKEESG 405
               ++ V +   SG
Sbjct: 81  TTYFSVNVSDALPSG 95

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
           G +      ++  +        L+  +      SI W R   ++   N   +        
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI------TG 53

Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
             + + ++ P D  +Y+    +  G      ++
Sbjct: 54  EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 57.8 bits (140), Expect = 9e-11
 Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
           + +    +++ LV     + L           + W ++G ++   +  T+    ++ ++ 
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN-RTRITGEEVEVQD 60

Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
           +    +G Y     + +G   T  SV ++
Sbjct: 61  SVPADSGLYACVTSSPSGSDTTYFSVNVS 89

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 46/141 (32%)

Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
           G +      ++  +        L+  +      SI W R   ++   N   +        
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI------TG 53

Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
             + + ++ P D  +Y                                  C   + +GS 
Sbjct: 54  EEVEVQDSVPADSGLY---------------------------------ACVTSSPSGSD 80

Query: 525 TCTATLSLLPESEVTDVMESP 545
           T   +++      V+D + S 
Sbjct: 81  TTYFSVN------VSDALPSG 95

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 89.7 bits (223), Expect = 7e-22
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 11/110 (10%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
             RF + ++   + +   A   C++    +  + W+K    L     Y +    +   L+
Sbjct: 8   PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPV 115
           I + +  D G Y+C           SA L V          +FT+   P 
Sbjct: 66  IHDLSVADAGEYSCMCGQ----ERTSATLTVRALP-----ARFTEGSGPS 106

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
            S    +FT+ LK   A   + ATL+  ++      + W +G E +     ++++ + T 
Sbjct: 4   GSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTR 61

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRKATTIDKP 206
             C L I + +  D   YS       G+    A L V        + 
Sbjct: 62  --CELQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEG 102

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
           +         TA+ Q         ++      V W      +++G   ++ QD    C+L
Sbjct: 15  LKTKEASEGATATLQ-------CELSKVAP--VEWKKGPETLRDGGRYSLKQD-GTRCEL 64

Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPV 417
            I ++   +AG YSC      G+   +ATL V          +FT+   P 
Sbjct: 65  QIHDLSVADAGEYSCMC----GQERTSATLTVRALP-----ARFTEGSGPS 106

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
                 + L+     + +T TL+ E +      V+W K  + +       ++      +L
Sbjct: 7   GPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
            I   +    G+Y        G+ RTS ++T+    A 
Sbjct: 65  QIHDLSVADAGEYSC----MCGQERTSATLTVRALPAR 98

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
            S    +FT+ LK   A   + ATL+  ++      + W +G E +     ++++ + T 
Sbjct: 4   GSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTR 61

Query: 463 GECVLSISEATPQDEAVYSVKASSTETK 490
             C L I + +  D   YS       T 
Sbjct: 62  --CELQIHDLSVADAGEYSCMCGQERTS 87

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 89.7 bits (223), Expect = 7e-22
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           A  F E++  +   ++  A+FTCK   HP  T+TW+K   EL A+  +  +       L 
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLT 66

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
           I    K D   YTC      G A   A L+V  + 
Sbjct: 67  ISALEKADSDTYTCDI----GQAQSRAQLLVQGRR 97

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 75.4 bits (186), Expect = 6e-17
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
            S  A  FT+ L  +  E +  A         P  ++ W +G  E+     H        
Sbjct: 4   GSSGANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQE--G 60

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
               L+IS     D   Y+       G+A+ RA L+
Sbjct: 61  LTLRLTISALEKADSDTYTCDI----GQAQSRAQLL 92

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
           G + +SG+   T       + +++VE   TA F           T  P   VTW      
Sbjct: 1   GSSGSSGANCFT-----EELTNLQVEEKGTAVFT--------CKTEHPAATVTWRKGLLE 47

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
           ++   +    Q+     +L IS +   ++  Y+C      G+A + A L V+ + 
Sbjct: 48  LRASGKHQPSQE-GLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRR 97

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
            S  A  FT+ L  +  E +  A         P  ++ W +G  E+     H        
Sbjct: 4   GSSGANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQE--G 60

Query: 463 GECVLSISEATPQDEAVYSVKASSTETK 490
               L+IS     D   Y+      +++
Sbjct: 61  LTLRLTISALEKADSDTYTCDIGQAQSR 88

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
            A      L  L V +  T     + T  P   V W K   E+ +        +    +L
Sbjct: 7   GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRL 65

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
            I    K  +  Y      + G+A++   + +
Sbjct: 66  TISALEKADSDTYTC----DIGQAQSRAQLLV 93

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 94.5 bits (234), Expect = 1e-21
 Identities = 54/321 (16%), Positives = 100/321 (31%), Gaps = 52/321 (16%)

Query: 5   LAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLP---TMTWQKDGTELHATEHYLITTVES 60
           +A     +              T  V G  PLP   T TW KD                +
Sbjct: 1   MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------ENN 50

Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
            +TL + + T E+ G Y     +   + +  + + ++E+    E        +     +Q
Sbjct: 51  TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEE---AELIVNITEPQHFYVSSQ 107

Query: 121 SPATLKATV---TGRPTPSIC-----WYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 172
           +   L ATV    G+           W +G++                    ++I E T 
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGED-------------VIDTTQDITIQEFTA 154

Query: 173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
               VY+VK       +   A+  +  AT      V+E+ T V     + +    +  + 
Sbjct: 155 DKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKT-VALGNEISLNYVVSEDIV 213

Query: 233 AEYTGTPTPEVK--WFKNGK------EIVSKDIETKDNVT-----KLVIKQTTKKTTGKY 279
            + +G P   +K  W+   +       I S+  E  +  +      L  +  T   T K+
Sbjct: 214 GDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKF 273

Query: 280 EIRVVNEAGEARTSGSVTITV 300
                        +  V  + 
Sbjct: 274 WCVAKLYQQIEDETVEVAAST 294

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 84.9 bits (209), Expect = 2e-18
 Identities = 51/319 (15%), Positives = 96/319 (30%), Gaps = 53/319 (16%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTP----SICWYRGKEEILPDNGHTMEFNPTT 160
           A   +         A    TL ATV G        +  W +  +    +           
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA 220
               L++++AT ++   Y V   +T       + + L +   +           +   Q 
Sbjct: 54  ----LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL--------IVNITEPQH 101

Query: 221 LLVPKDSTVTLEAE---YTGTPTPEV-----KWFKNGKEIVSKDIETKDNVTKLVIKQTT 272
             V   + V L A      G    +       W K    I        D    + I++ T
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI--------DTTQDITIQEFT 153

Query: 273 KKTTGKYEIRVVNEAGEARTSGSVTI---TVAEAETVMMDVRVESHPTASFQWFIHSEPV 329
               G Y ++V  E+ ++  S S  I   T+   + V+    V      S  + +  + V
Sbjct: 154 ADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIV 213

Query: 330 VV-TGKPTPLVTWS----HDG--TPMKEGKEVTIYQDTDGLC---KLAISEVFPENAGLY 379
              +G P   + ++     +G  +P   G EV    +   +     L       ++   +
Sbjct: 214 GDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKF 273

Query: 380 SCTAVNPVGEAVAAATLAV 398
            C A            +A 
Sbjct: 274 WCVAKLYQQIEDETVEVAA 292

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 77.6 bits (190), Expect = 8e-16
 Identities = 49/305 (16%), Positives = 87/305 (28%), Gaps = 58/305 (19%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPE----VKWFKNGKEIVSKDIETKDNVTKL 266
           A T+               TL A   G           W K+ +         ++N   L
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH-------ENNTATL 54

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE-----TVMMDVRVESHPTASFQ 321
            +   T +  G Y++ V +      +  S    + EAE     T      V S       
Sbjct: 55  TVADATSENAGSYKVTVQDTDTMT-SVESEVFLMEEAELIVNITEPQHFYVSSQTDVEL- 112

Query: 322 WFIHSEPVVVTGKPTPLV-----TWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
              H+      GK          +WS     +   +++TI             E   +  
Sbjct: 113 ---HATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITI------------QEFTADKN 157

Query: 377 GLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG--- 433
           G+Y+        ++ A+A+  +     + +       ++       +  +L   V+    
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQD----VVESKTVALGNEISLNYVVSEDIV 213

Query: 434 -------RPTPSICWYRGKEEILP------DNGHTMEFNPTTGECVLSISEATPQDEAVY 480
                    T    WY  +E  L       + G  +E    T +  L    AT  D A +
Sbjct: 214 GDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKF 273

Query: 481 SVKAS 485
              A 
Sbjct: 274 WCVAK 278

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 56.8 bits (136), Expect = 5e-09
 Identities = 35/219 (15%), Positives = 67/219 (30%), Gaps = 38/219 (17%)

Query: 329 VVVTGKPTPL---VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVN 385
            V   +P P     TW+ D  P             +    L +++   ENAG Y  T  +
Sbjct: 25  TVAGDEPLPSNLTYTWTKDDQPH-----------ENNTATLTVADATSENAGSYKVTVQD 73

Query: 386 PVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATV---TGRPTPSIC-- 440
                   + + + E+    E        +     +Q+   L ATV    G+        
Sbjct: 74  TDTMTSVESEVFLMEE---AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYEL 130

Query: 441 ---WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR 497
              W +G++                    ++I E T     VY+VK            + 
Sbjct: 131 HYSWSKGED-------------VIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASAST 177

Query: 498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPES 536
            ++L +      + +    A     S+    +  ++ +S
Sbjct: 178 KIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDS 216

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 91.3 bits (226), Expect = 3e-21
 Identities = 38/211 (18%), Positives = 60/211 (28%), Gaps = 39/211 (18%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPT----MTWQKDGTELHATEHYLIT------------- 56
           Q +   + + A   CK    P       + W    ++    +  +I              
Sbjct: 8   QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67

Query: 57  -----------TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEA 105
                           +++ + N    DIG Y CK     GVA     L VL K      
Sbjct: 68  LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK------ 121

Query: 106 PKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
           P  T+       E  +   LK     G       W +  +              T+   V
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL--AEMTSP--V 177

Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANL 195
           +S+  A+ +    YS    N  G  +C   L
Sbjct: 178 ISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 80.9 bits (199), Expect = 1e-17
 Identities = 29/219 (13%), Positives = 59/219 (26%), Gaps = 39/219 (17%)

Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTP----SICWYRGKEEILPDNGHTMEFN------- 157
           T P + +       A L    T  P       I W     +    +   + ++       
Sbjct: 4   TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63

Query: 158 ---------------PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT 202
                            +G+  ++++     D   Y  K     G A  +  L       
Sbjct: 64  YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLT------ 117

Query: 203 IDKPRVLEAPTIVRPLQALLVPKDSTVTLE-AEYTGTPTPEVKWFKNGKEIVSKDIETKD 261
                VL  P+  R          +   L+     G+   + +W K             +
Sbjct: 118 -----VLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE 172

Query: 262 NVTK-LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
             +  + +K  + + +G Y   V N  G  +    + + 
Sbjct: 173 MTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 78.2 bits (192), Expect = 1e-16
 Identities = 36/247 (14%), Positives = 61/247 (24%), Gaps = 52/247 (21%)

Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIH--SEPVVVTGKPTPLVTWSHDGTPMKEGKE- 353
            I  A+ ET  +  +    P       I     P         ++ +S D        + 
Sbjct: 9   RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDL 68

Query: 354 -----VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAP 408
                 T      G   + ++ +   + G Y C      G A     L V  K      P
Sbjct: 69  KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK------P 122

Query: 409 KFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
             T+       E  +   LK     G       W +  +              T+     
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL--AEMTSP---- 176

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
                                          V+ +   + +  G  +C  +N  GS  C 
Sbjct: 177 -------------------------------VISVKNASSEYSGTYSCTVQNRVGSDQCM 205

Query: 528 ATLSLLP 534
             L ++P
Sbjct: 206 LRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 77.8 bits (191), Expect = 2e-16
 Identities = 32/223 (14%), Positives = 57/223 (25%), Gaps = 47/223 (21%)

Query: 213 TIVRPLQALLVPKDSTVTLEAEYTGTPTP----EVKWFKNGKEIVSKDIE---------- 258
           +I  P Q +   K  T  L  ++T +P      +++W  +  +    D            
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 259 ------------------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
                                + + + +        G Y+ +V    G A  +    +TV
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDAS-INVTNLQLSDIGTYQCKVKKAPGVA--NKKFLLTV 118

Query: 301 AEA---ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
                     +D   E       +           G       W                
Sbjct: 119 LVKPSGTRCFVDGSEEIGNDFKLKCE------PKEGSLPLQFEWQKLSDSQTMPTPWLAE 172

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
             +     +++     E +G YSCT  N VG       L V  
Sbjct: 173 MTSPV---ISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 68.6 bits (167), Expect = 2e-13
 Identities = 18/94 (19%), Positives = 25/94 (26%), Gaps = 3/94 (3%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
            P                    C+  EG       WQK          +L         +
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VI 178

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
            + N + E  G Y+C   N  G   C   L V+ 
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 17/159 (10%), Positives = 38/159 (23%), Gaps = 24/159 (15%)

Query: 411 TKPLKPVIAEAQSPATLKATVTGRPTP----SICWYRGKEEILPDNGHTMEFNPTTGECV 466
           T P + +       A L    T  P       I W     +    +   + ++       
Sbjct: 4   TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSG------ 57

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
               +           +   T   + +    + + ++ +    IG   C+ +   G    
Sbjct: 58  ---DKIYDNYYPDLKGRVHFTSNDVKSG--DASINVTNLQLSDIGTYQCKVKKAPGVANK 112

Query: 527 TATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
              L+         V+  P   +         G      
Sbjct: 113 KFLLT---------VLVKPSGTRCFVDGSEEIGNDFKLK 142

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 87.8 bits (218), Expect = 4e-21
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-SV 61
           +      IE ++ V   +   A F C++       + W  D T LHA E   I       
Sbjct: 10  QGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY 69

Query: 62  STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTK 110
             L +     +D G    +A    G    SA L V EK        F++
Sbjct: 70  HVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKP-----SVFSR 109

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 82.1 bits (203), Expect = 5e-19
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 11/119 (9%)

Query: 88  ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 147
            +  ++ +V  +          + L+ V  +  S AT +  ++      + W+  K  + 
Sbjct: 1   GSSGSSGLVQGR-----RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH 55

Query: 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRKATTIDK 205
            +  + ++  P  G  VL++ +   +D      +A    G     A L V  K +   +
Sbjct: 56  ANELNEIDAQP-GGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSR 109

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 75.5 bits (186), Expect = 8e-17
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 290 ARTSGSVTITVAEAE--TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
             +  S  +          + DV V+   +A+F+         ++      V W  D TP
Sbjct: 1   GSSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFR-------CRISPANYEPVHWFLDKTP 53

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEA 407
           +   +   I     G   L + ++  +++G     A    G+  A+A L V EK      
Sbjct: 54  LHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKP----- 104

Query: 408 PKFTK 412
             F++
Sbjct: 105 SVFSR 109

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 73.6 bits (181), Expect = 4e-16
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 449
             + ++  V+ +          + L+ V  +  S AT +  ++      + W+  K  + 
Sbjct: 1   GSSGSSGLVQGR-----RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH 55

Query: 450 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
            +  + ++  P  G  VL++ +   +D      +A      
Sbjct: 56  ANELNEIDAQP-GGYHVLTLRQLALKDSGTIYFEAGDQRAS 95

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 72.8 bits (179), Expect = 8e-16
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDN-VTK 265
               I+  L+ + V + S+ T     +      V WF +   + + +   I+ +      
Sbjct: 12  RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV 71

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
           L ++Q   K +G        EAG+ R S ++ +T   + 
Sbjct: 72  LTLRQLALKDSGTIYF----EAGDQRASAALRVTEKPSV 106

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 86.6 bits (215), Expect = 7e-21
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
              + +  V     + A F  ++   P     W+  G  L A+    I        L +
Sbjct: 6  IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64

Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
           N      G  + +A N       +ANL V E
Sbjct: 65 HNCQLGMTGEVSFQAAN----TKSAANLKVKE 92

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 7/91 (7%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
            +  KPL  V       A  +  ++  P     W    + +       +  +      +L
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKK--HIL 62

Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLV 196
            +           S +A       +  ANL 
Sbjct: 63  ILHNCQLGMTGEVSFQA----ANTKSAANLK 89

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVI 268
             + +PL  + V    T   E E +  P    +W   G+ + +     I        L++
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64

Query: 269 KQTTKKTTGKYEIRVVNEAGEAR 291
                  TG+   +  N    A 
Sbjct: 65  HNCQLGMTGEVSFQAANTKSAAN 87

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 64.2 bits (157), Expect = 5e-13
 Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 25/103 (24%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
           + V   ET   ++ +                     +P     W   G P+    +  I 
Sbjct: 15  VEVFVGETAHFEIEL--------------------SEPDVHGQWKLKGQPLAASPDCEII 54

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
           +D      L +        G  S  A        +AA L V+E
Sbjct: 55  ED-GKKHILILHNCQLGMTGEVSFQA----ANTKSAANLKVKE 92

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
            +  KPL  V       A  +  ++  P     W    + +       +  +      +L
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKK--HIL 62

Query: 468 SISEATPQDEAVYSVKASSTETK 490
            +           S +A++T++ 
Sbjct: 63  ILHNCQLGMTGEVSFQAANTKSA 85

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 87.1 bits (216), Expect = 8e-21
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 6   APRFI---EKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
            P+        Q  +    +        +G P P + W K G  L  T    + T +  +
Sbjct: 21  PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL-DTSRVHVRTSDFDT 79

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
              +    + D G Y           T +  + V+EK
Sbjct: 80  VFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 208 VLEAPTIVRPL---QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDN 262
           + E P I  P    Q  +      + L   + G P P+V W K G  + +    + T D 
Sbjct: 18  IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF 77

Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
            T   ++Q  +  +G+YE+ V  E  +   + ++ I V E
Sbjct: 78  DTVFFVRQAARSDSGEYELSVQIENMKD--TATIRIRVVE 115

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
            V   GKP P V W+  G P+ +   V + + +D      + +    ++G Y  +     
Sbjct: 45  VVPFQGKPRPQVVWTKGGAPL-DTSRVHV-RTSDFDTVFFVRQAARSDSGEYELSVQIEN 102

Query: 388 GEAVAAATLAVEEK 401
            +  A   + V EK
Sbjct: 103 MKDTATIRIRVVEK 116

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 70.9 bits (174), Expect = 4e-15
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 14/125 (11%)

Query: 85  GGVATCSANLIVLEKEESGEAPKFTKPLK---PVIAEAQSPATLKATVTGRPTPSICWYR 141
           G   T +  + + E  E    PK   P       I +      L     G+P P + W +
Sbjct: 4   GSSGTLAQPVTIREIAE---PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60

Query: 142 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKAT 201
           G   +       +    +  + V  + +A   D   Y +       +      +      
Sbjct: 61  GGAPLDTSR---VHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI-----R 112

Query: 202 TIDKP 206
            ++K 
Sbjct: 113 VVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 20/152 (13%), Positives = 36/152 (23%), Gaps = 44/152 (28%)

Query: 383 AVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK---PVIAEAQSPATLKATVTGRPTPSI 439
           +    G      T+      E  E PK   P       I +      L     G+P P +
Sbjct: 2   SSGSSGTLAQPVTI-----REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV 56

Query: 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499
            W +G   +                                     ++   + T    +V
Sbjct: 57  VWTKGGAPL------------------------------------DTSRVHVRTSDFDTV 80

Query: 500 LLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
             + +  R   G+     +      T T  + 
Sbjct: 81  FFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 6   APRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
              F + + P     +     F  ++   P   + W K+G E+  +  Y+         L
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
            I N    D   Y   A    G   CS  L V     SG
Sbjct: 66  FINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPSSG 100

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 210 EAPTIVRPLQ-ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTK 265
                 + L  A  V K   V    E    P  EVKW+KNG+EI        E K     
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA 301
           L I         +Y +     AG+ + S  + +   
Sbjct: 65  LFINNCQMTDDSEYYV----TAGDEKCSTELFVRSG 96

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
           V    P   V W  +G  ++   +            L I+     +   Y  TA    G+
Sbjct: 30  VELADPKLEVKWYKNGQEIRPSTKYIFEHK-GCQRILFINNCQMTDDSEYYVTA----GD 84

Query: 390 AVAAATLAVEEKEESG 405
              +  L V     SG
Sbjct: 85  EKCSTELFVRSGPSSG 100

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 8/101 (7%)

Query: 101 ESGEAPKFTKPLKP-VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
                  F K L P    +          +   P   + WY+  +EI P   +  E    
Sbjct: 3   SGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA 200
               +L I+     D++ Y V A    G  +C   L +R  
Sbjct: 62  Q--RILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSG 96

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 403 ESGEAPKFTKPLKP-VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
                  F K L P    +          +   P   + WY+  +EI P   +  E    
Sbjct: 3   SGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61

Query: 462 TGECVLSISEATPQDEAVYSVKASSTETK 490
               +L I+     D++ Y V A   +  
Sbjct: 62  Q--RILFINNCQMTDDSEYYVTAGDEKCS 88

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 85.0 bits (211), Expect = 2e-20
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
              I+ ++       +     C++     P + W KD   +  ++ Y +    +++ L I
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67

Query: 67  INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
              + +D G YTC+       +  +A+L V EK  
Sbjct: 68  RGASLKDAGEYTCEVEA----SKSTASLHVEEKAS 98

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 99  KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 158
              S       KPL+           L+  ++   TP + W + ++ I     + +    
Sbjct: 2   SSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEG 60

Query: 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAE 190
                +L I  A+ +D   Y+ +   +   A 
Sbjct: 61  --TMAMLVIRGASLKDAGEYTCEVEASKSTAS 90

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVI 268
             I++PL+   V     V L  E +   TP V W K+ K I       +  +  +  LVI
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67

Query: 269 KQTTKKTTGKYEIRVVNEAGEAR 291
           +  + K  G+Y   V      A 
Sbjct: 68  RGASLKDAGEYTCEVEASKSTAS 90

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
              S       KPL+           L+  ++   TP + W + ++ I     + +    
Sbjct: 2   SSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEG 60

Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETK 490
                +L I  A+ +D   Y+ +  ++++ 
Sbjct: 61  --TMAMLVIRGASLKDAGEYTCEVEASKST 88

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 18/116 (15%)

Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
           G + +SG   I        + D  V        +         ++   TP V W  D   
Sbjct: 1   GSSGSSGPAAII-----KPLEDQWVAPGEDVELR-------CELSRAGTP-VHWLKDRKA 47

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEE 403
           +++ ++  +  +   +  L I     ++AG Y+C            A+L VEEK  
Sbjct: 48  IRKSQKYDVVCE-GTMAMLVIRGASLKDAGEYTCEVEASKST----ASLHVEEKAS 98

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 83.6 bits (207), Expect = 9e-20
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 2  AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV 61
           +V+  +     + V +     A  +C+V       +TW KDG +L ++    +  V   
Sbjct: 7  GKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCT 65

Query: 62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
            L +    + + G Y+C+A         S  L V  +
Sbjct: 66 RRLVVQQAGQAEAGEYSCEAGG----QQLSFRLQVAGQ 99

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 72.4 bits (178), Expect = 8e-16
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
           G + +SG V    A+ +    +V+ E+  +A+              +    VTW  DG  
Sbjct: 1   GSSGSSGKVV--FAKEQPAHREVQAEAGASATLS--------CEVAQAQTEVTWYKDGKK 50

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
           +    +V +        +L + +     AG YSC A    G    +  L V  +
Sbjct: 51  LSSSSKVRVEAV-GCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQ 99

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 86  GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 145
           G +  S  ++           K     + V AEA + ATL   V       + WY+  ++
Sbjct: 1   GSSGSSGKVVF---------AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKK 50

Query: 146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
           +   +   +E    T    L + +A   +   YS +A    G  +    L 
Sbjct: 51  LSSSSKVRVEAVGCT--RRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQ 95

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 447
           G + ++  +            K     + V AEA + ATL   V       + WY+  ++
Sbjct: 1   GSSGSSGKVVF---------AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKK 50

Query: 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
           +   +   +E    T    L + +A   +   YS +A   +  
Sbjct: 51  LSSSSKVRVEAVGCT--RRLVVQQAGQAEAGEYSCEAGGQQLS 91

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 200 ATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--- 256
           + +  K    +     R +Q       ++ TL  E       EV W+K+GK++ S     
Sbjct: 3   SGSSGKVVFAKEQPAHREVQ---AEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVR 58

Query: 257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
           +E      +LV++Q  +   G+Y      EAG  + S  + + 
Sbjct: 59  VEAVGCTRRLVVQQAGQAEAGEYSC----EAGGQQLSFRLQVA 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (206), Expect = 1e-19
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
             + +  +     +  +     C++  +      W K+G  +  ++   +     +  L 
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLV 64

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
           I N   ED G Y           T  A + V+    SG
Sbjct: 65  IANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPSSG 100

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
               I+ PL    V     + L+ E +       KW KNG  +   D   +  K  + KL
Sbjct: 6   SGLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHKL 63

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           VI     +  G Y      +A        V +  
Sbjct: 64  VIANALTEDEGDY--VFAPDAYNVTLPAKVHVIS 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 63.5 bits (155), Expect = 9e-13
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 12/99 (12%)

Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
           + D  V        +         ++        W+ +G P++E   + + Q    + KL
Sbjct: 14  LTDQTVNLGKEICLK-------CEISENIP--GKWTKNGLPVQESDRLKVVQK-GRIHKL 63

Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESG 405
            I+    E+ G Y              A + V     SG
Sbjct: 64  VIANALTEDEGDYVF--APDAYNVTLPAKVHVISGPSSG 100

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 7/95 (7%)

Query: 102 SGEAP-KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
           SG +  K   PL            LK  ++        W +    +   +   +      
Sbjct: 3   SGSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQK--G 58

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
               L I+ A  +DE  Y              A +
Sbjct: 59  RIHKLVIANALTEDEGDYVF--APDAYNVTLPAKV 91

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 404 SGEAP-KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
           SG +  K   PL            LK  ++        W +    +   +   +      
Sbjct: 3   SGSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQK--G 58

Query: 463 GECVLSISEATPQDEAVYSVKASSTETK 490
               L I+ A  +DE  Y     +    
Sbjct: 59  RIHKLVIANALTEDEGDYVFAPDAYNVT 86

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 82.8 bits (205), Expect = 1e-19
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
            F +K + V      PA+F  + E      + WQ+ G+++ A+  Y + T  +  TL +
Sbjct: 9  SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67

Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
                D G Y   A    G +    +L V+E
Sbjct: 68 REVGPADQGSYAVIA----GSSKVKFDLKVIE 95

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
             F+K  + V   A SPA  +A         + W RG  +I   N + +    T     L
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTR--HTL 65

Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLV 196
           ++ E  P D+  Y+V A    G ++ + +L 
Sbjct: 66  TVREVGPADQGSYAVIA----GSSKVKFDLK 92

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKD 261
           +P         +  +++ V   S    EAE       +V+W + G +I + +   + T+ 
Sbjct: 2   EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEG 60

Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
               L +++      G Y +     AG ++    + + 
Sbjct: 61  TRHTLTVREVGPADQGSYAV----IAGSSKVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
              V V +   A F+          T +    V W   G+ +    +  +  +      L
Sbjct: 15  PRSVEVAAGSPAVFE--------AETERAGVKVRWQRGGSDISASNKYGLATE-GTRHTL 65

Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
            + EV P + G Y+  A    G +     L V E
Sbjct: 66  TVREVGPADQGSYAVIA----GSSKVKFDLKVIE 95

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
             F+K  + V   A SPA  +A         + W RG  +I   N + +    T     L
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTR--HTL 65

Query: 468 SISEATPQDEAVYSVKASSTETK 490
           ++ E  P D+  Y+V A S++ K
Sbjct: 66  TVREVGPADQGSYAVIAGSSKVK 88

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
             RF E ++ +   +   A   C +     P   W      L   + Y +    ++  L 
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAPV-KWCYGNNVLRPGDKYSLRQEGAMLELV 66

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
           + N   +D G Y+C      G  T SA L V     
Sbjct: 67  VRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 73.1 bits (180), Expect = 5e-16
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
             S    +F + LK +       ATL+  ++    P + W  G   + P + +++     
Sbjct: 3   SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-- 59

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
                L +    PQD   YS       G     A L 
Sbjct: 60  GAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLT 92

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
             S    +F + LK +       ATL+  ++    P + W  G   + P + +++     
Sbjct: 3   SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-- 59

Query: 462 TGECVLSISEATPQDEAVYSVKASSTETK 490
                L +    PQD   YS       T 
Sbjct: 60  GAMLELVVRNLRPQDSGRYSCSFGDQTTS 88

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 307 MMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKL 366
           + D+ V     A+ +        V++    P V W +    ++ G + ++ Q+   + +L
Sbjct: 15  LKDLEVLEGGAATLR-------CVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-GAMLEL 65

Query: 367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEE 403
            +  + P+++G YSC+     G+   +ATL V     
Sbjct: 66  VVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 66.6 bits (163), Expect = 8e-14
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLV 267
                  L+ L V +    TL    +    P VKW      +   D   +  +  + +LV
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV 66

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
           ++    + +G+Y        G+  TS ++T+T   + 
Sbjct: 67  VRNLRPQDSGRYSC----SFGDQTTSATLTVTALPSG 99

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 83.8 bits (207), Expect = 2e-19
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV----- 61
           P  ++    V  H          V+G P P++ W  +G+ L+ T       +E       
Sbjct: 4   PASVQLHTAVEMHHW---CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 62  --STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAP 106
               L +  PT  + G YT  A N  G A+ S     ++        
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 325 HSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGL------CKLAISEVFPENAGL 378
              P  V G+P P + W  +G+ + E   +                 L +++    N G 
Sbjct: 18  WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77

Query: 379 YSCTAVNPVGEAVAAATLAVEEKEESGEAP 408
           Y+  A NP G+A A+   A  +        
Sbjct: 78  YTLLAANPFGQASASIMAAFMDNPFEFNPE 107

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF-----NPTT 160
           P   +    V         +  +V G+P PS+ W      +   +    EF     N T 
Sbjct: 4   PASVQLHTAV---EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
               L +++ T  +   Y++ A N FG+A                P 
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 57.3 bits (138), Expect = 3e-10
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 13/118 (11%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD------IETKDNVTK 265
           P  V+   A+   +     +     G P P ++W  NG  +          +E   N T 
Sbjct: 4   PASVQLHTAV---EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 266 ----LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTAS 319
               L + Q T    G Y +   N  G+A  S          E    D   +++ T+ 
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSG 118

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 53.4 bits (128), Expect = 7e-09
 Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 41/131 (31%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF-----NPTT 462
           P   +    V         +  +V G+P PS+ W      +   +    EF     N T 
Sbjct: 4   PASVQLHTAV---EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
               L +++ T  +   Y                                 T  A N  G
Sbjct: 61  RHGCLRLNQPTHVNNGNY---------------------------------TLLAANPFG 87

Query: 523 SVTCTATLSLL 533
             + +   + +
Sbjct: 88  QASASIMAAFM 98

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
               ++ I  +     + A+F C+V      T  W K+G E+  ++   I+ V     L 
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKP 111
           I +   ED G YT          + SA L  LE        K + P
Sbjct: 67  IDDVRPEDEGDYTFVPDG--YALSLSAKLNFLE-------IKVSGP 103

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 67.4 bits (165), Expect = 5e-14
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 23/126 (18%)

Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
           G + +SG + +        + D+ V++   A F+         V+        W  +G  
Sbjct: 1   GSSGSSGQLEVL-----QDIADLTVKAAEQAVFK-------CEVSD-EKVTGKWYKNGVE 47

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEA 407
           ++  K +TI        KL I +V PE+ G Y+            +A L   E       
Sbjct: 48  VRPSKRITISHV-GRFHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLE------- 97

Query: 408 PKFTKP 413
            K + P
Sbjct: 98  IKVSGP 103

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           S    +  + +  +  +A   A  K  V+     +  WY+   E+ P    T+       
Sbjct: 5   SSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHV--GR 61

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT 202
              L I +  P+DE  Y+            + N +  K + 
Sbjct: 62  FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSG 102

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLV 267
              +++ +  L V        + E +       KW+KNG E+       I       KLV
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
           I     +  G Y       A       S  +   E +  
Sbjct: 67  IDDVRPEDEGDYTFVPDGYALSL----SAKLNFLEIKVS 101

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           S    +  + +  +  +A   A  K  V+     +  WY+   E+ P    T+       
Sbjct: 5   SSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHV--GR 61

Query: 464 ECVLSISEATPQDEAVYSVKASSTET 489
              L I +  P+DE  Y+        
Sbjct: 62  FHKLVIDDVRPEDEGDYTFVPDGYAL 87

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 82.4 bits (203), Expect = 3e-19
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 12/108 (11%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQKD---------GTELHAT 50
           +     F+ + Q           F+ +V G  L   P + W K          G  L   
Sbjct: 1   DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60

Query: 51  EHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
           + Y   +   +  L I +      G Y C+ +        + NL V E
Sbjct: 61  DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 60.4 bits (146), Expect = 1e-11
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 10/101 (9%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILPDN-------GHTM 154
              F    +          T  A V G      P + W++GK   L            + 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 155 EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
           +         L I++A P     Y  +            NL
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 55.8 bits (134), Expect = 6e-10
 Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 17/107 (15%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTP---TPEVKWFKNGKEIV------------SK 255
               V   Q   V    ++T  A   G      P VKWFK     +            S 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 256 DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
           D  +K  + +L I       TG Y   V  +        +  +TV E
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD--CSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 19/111 (17%), Positives = 30/111 (27%), Gaps = 24/111 (21%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT---PMKEGKEV 354
             V    ++    RV                        P+V W          K G+ +
Sbjct: 14  GEVTVGGSITFSARVAGASLL----------------KPPVVKWFKGKWVDLSSKVGQHL 57

Query: 355 TIYQDTD-----GLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
            ++   D      L +L I++  P   G Y C          +   L V E
Sbjct: 58  QLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 17/134 (12%), Positives = 25/134 (18%), Gaps = 43/134 (32%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILPDN-------GHTM 456
              F    +          T  A V G      P + W++GK   L            + 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 457 EFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCR 516
           +         L I++A P     Y                                  C 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSY---------------------------------RCE 90

Query: 517 AENVAGSVTCTATL 530
                        L
Sbjct: 91  VSTKDKFDCSNFNL 104

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 85.6 bits (212), Expect = 3e-19
 Identities = 37/239 (15%), Positives = 66/239 (27%), Gaps = 45/239 (18%)

Query: 75  GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT 134
             Y   ++ +              +     APK   P   V     +   +   V   P+
Sbjct: 1   ATYAAASSALVP------------RGSHMYAPKLQGP-VAVYTWEGNQVNITCEVFAYPS 47

Query: 135 PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRAN 194
            +I W+R  + +   N   ++   T     L ++  +  D   Y+  AVN  G+      
Sbjct: 48  ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI 107

Query: 195 LVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA-EYTGT-----------PTPE 242
           L              + P+     Q       + V  +  E TG               E
Sbjct: 108 L-----------VQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE 156

Query: 243 VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV--VNEAGEARTSGSVTIT 299
             W     +     +E    +  L       K    Y +R+  +N  G    S +    
Sbjct: 157 EVWHSKWYDAKEASMEGIVTIVGL-------KPETTYAVRLAALNGKGLGEISAASEFK 208

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 82.6 bits (204), Expect = 3e-18
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 2/108 (1%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVE 59
              +    ++    V + +      TC+V  +P  T++W +DG  L ++   +  I    
Sbjct: 14  GSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP 73

Query: 60  SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPK 107
           S S LE+   ++ D G Y C A N  G  +    L+  +   S    +
Sbjct: 74  SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQ 121

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 23/155 (14%), Positives = 41/155 (26%), Gaps = 46/155 (29%)

Query: 377 GLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT 436
             Y+  +   V             +     APK   P   V     +   +   V   P+
Sbjct: 1   ATYAAASSALVP------------RGSHMYAPKLQGP-VAVYTWEGNQVNITCEVFAYPS 47

Query: 437 PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN 496
            +I W+R  + +   N   +                                 KI    +
Sbjct: 48  ATISWFRDGQLLPSSNYSNI---------------------------------KIYNTPS 74

Query: 497 RSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
            S L ++  + +  G+  C A N  G  +    L 
Sbjct: 75  ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 8/127 (6%)

Query: 284 VNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSH 343
              A  +      +   A      + V        +           V   P+  ++W  
Sbjct: 2   TYAAASSALVPRGSHMYAPKLQGPVAVYTWEGNQVNI-------TCEVFAYPSATISWFR 54

Query: 344 DGTPMKEGKEVTIY-QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
           DG  +       I   +T     L ++     + G Y+CTAVN +G+      L   +  
Sbjct: 55  DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTP 114

Query: 403 ESGEAPK 409
            S    +
Sbjct: 115 SSPSIDQ 121

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 84.3 bits (208), Expect = 4e-19
 Identities = 27/185 (14%), Positives = 45/185 (24%), Gaps = 24/185 (12%)

Query: 22  QPALFTCKVEGHPLPTM--TWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTC 79
              L TC +           W K G  L                 E    + +  G Y+C
Sbjct: 14  SKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-------LPGQKTEFKVDSDDQWGEYSC 66

Query: 80  KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSIC 138
                      +AN+ +         P+               A L       P      
Sbjct: 67  VFLPE---PMGTANIQLHGP------PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA 117

Query: 139 WYRGKEEILPDNGHT----MEFNPTTGECVLSISEATPQ-DEAVYSVKAVNTFGRAECRA 193
           WY+  +       +        + + G   L I     + D   Y     ++ G  +   
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAII 177

Query: 194 NLVLR 198
            L +R
Sbjct: 178 TLRVR 182

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 74.3 bits (182), Expect = 1e-15
 Identities = 33/194 (17%), Positives = 50/194 (25%), Gaps = 40/194 (20%)

Query: 223 VPKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYE 280
               S + L      + T     +W K G  +     E      K   K  +    G+Y 
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLKGGVVL----KEDALPGQKTEFKVDSDDQWGEYS 65

Query: 281 IRVVNEAGEART----------SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV 330
              + E                +   +  + E ET M+  + ES P              
Sbjct: 66  CVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVP-------------- 111

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVT-----IYQDTDGLCKLAISEVFPEN-AGLYSCTAV 384
               P     W        +              + G  +L I  +  E   G Y C   
Sbjct: 112 ----PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGT 167

Query: 385 NPVGEAVAAATLAV 398
           +  G   A  TL V
Sbjct: 168 SSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 72.8 bits (178), Expect = 5e-15
 Identities = 29/205 (14%), Positives = 47/205 (22%), Gaps = 50/205 (24%)

Query: 330 VVTGKPTPLV--TWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
            +    T +    W   G  +KE              K        +  G YSC  +   
Sbjct: 21  SLNDSATEVTGHRWLKGGVVLKEDALPG--------QKTEFKVDSDDQWGEYSCVFLP-- 70

Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKE 446
            E +  A + +         P+               A L       P      WY+  +
Sbjct: 71  -EPMGTANIQLHGP------PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITD 123

Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
                  +                              S +   + +   RS L I  + 
Sbjct: 124 SEDKALMNG-----------------------------SESRFFVSSSQGRSELHIENLN 154

Query: 507 RDQ-IGDVTCRAENVAGSVTCTATL 530
            +   G   C   +  GS     TL
Sbjct: 155 MEADPGQYRCNGTSSKGSDQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 65.8 bits (160), Expect = 1e-12
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTM-TWQKDGTELH------ATEHYLITTVE 59
           PR          ++ + A+  CK E  P  T   W K            +   + +++ +
Sbjct: 84  PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143

Query: 60  SVSTLEIINPT-KEDIGVYTCKATNIGGVATCSANLIV 96
             S L I N   + D G Y C  T+  G       L V
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 65.8 bits (160), Expect = 1e-12
 Identities = 21/203 (10%), Positives = 52/203 (25%), Gaps = 36/203 (17%)

Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLS 166
              +   + +  S   L  ++    T      W +G   +  D                 
Sbjct: 2   AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG---------QKTE 52

Query: 167 ISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD 226
               +      YS   +         AN+           ++   P +     +  + + 
Sbjct: 53  FKVDSDDQWGEYSCVFLP---EPMGTANI-----------QLHGPPRVKAVKSSEHINEG 98

Query: 227 STVTLEAEYTGTP-TPEVKWFKNGKEIVSKD---------IETKDNVTKLVIKQTTKKT- 275
            T  L  +    P   +  W+K                  + +    ++L I+    +  
Sbjct: 99  ETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEAD 158

Query: 276 TGKYEIRVVNEAGEARTSGSVTI 298
            G+Y     +  G  +   ++ +
Sbjct: 159 PGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 15/157 (9%), Positives = 33/157 (21%), Gaps = 56/157 (35%)

Query: 411 TKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLS 468
              +   + +  S   L  ++    T      W +G   +  D                 
Sbjct: 2   AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG------------- 48

Query: 469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTA 528
                                                + DQ G+ +C           TA
Sbjct: 49  -----------------------------QKTEFKVDSDDQWGEYSCVFLP---EPMGTA 76

Query: 529 TLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
            +          +   PR      +  + +G++ +  
Sbjct: 77  NIQ---------LHGPPRVKAVKSSEHINEGETAMLV 104

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 81.3 bits (201), Expect = 6e-19
 Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 5/94 (5%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
              ++++ +   + +   F C +          W   G  + ++  +  T       L 
Sbjct: 9  VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68

Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
          +      D G             T  A+LIV E+
Sbjct: 69 VREAAPSDAGEVVFSVRG----LTSKASLIVRER 98

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 16/114 (14%)

Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
           G + +SG V IT       +  + V    + SF      E V+     +    W+  G  
Sbjct: 1   GSSGSSGHVGIT-----KRLKTMEVLEGESCSF------ECVLSHESASDPAMWTVGGKT 49

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
           +         +       L + E  P +AG    +         + A+L V E+
Sbjct: 50  VGSSSRFQATRQ-GRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRER 98

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 67.0 bits (164), Expect = 6e-14
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
           S      TK LK +        + +  ++    +    W  G + +   +          
Sbjct: 5   SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ--G 62

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
            + +L + EA P D                 +A+L+
Sbjct: 63  RKYILVVREAAPSDAGEVVFSV----RGLTSKASLI 94

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 3/88 (3%)

Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
           S      TK LK +        + +  ++    +    W  G + +   +          
Sbjct: 5   SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ--G 62

Query: 463 GECVLSISEATPQDEAVYSVKASSTETK 490
            + +L + EA P D            +K
Sbjct: 63  RKYILVVREAAPSDAGEVVFSVRGLTSK 90

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 63.9 bits (156), Expect = 7e-13
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKD---IETKDNVTKLV 267
             I + L+ + V +  + + E   +  + +    W   GK + S        +     LV
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68

Query: 268 IKQTTKKTTGKYEIRVVNEAGEAR 291
           +++      G+    V     +A 
Sbjct: 69  VREAAPSDAGEVVFSVRGLTSKAS 92

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 81.6 bits (201), Expect = 8e-19
 Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQKD---------GTELHATEHY 53
              FIEK Q       +   F  KV+   L   PT+ W K          G  L   E +
Sbjct: 7   GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 54  LITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEES 102
              +      ++II       G Y C+ T      +CS +L V E   +
Sbjct: 67  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 66.6 bits (162), Expect = 2e-13
 Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 11/122 (9%)

Query: 101 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKE-EILPDNGHTMEF 156
                  F +  +    +     T  A V        P+I W++GK  ++    G  ++ 
Sbjct: 3   SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62

Query: 157 NPT------TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLE 210
             T           + I +A       Y  +         C  +L + ++T    P +  
Sbjct: 63  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT-PNIDS 121

Query: 211 AP 212
            P
Sbjct: 122 GP 123

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 19/153 (12%), Positives = 37/153 (24%), Gaps = 43/153 (28%)

Query: 403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKE-EILPDNGHTMEF 458
                  F +  +    +     T  A V        P+I W++GK  ++    G  ++ 
Sbjct: 3   SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62

Query: 459 NPT------TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGD 512
             T           + I +A       Y                                
Sbjct: 63  KETFERHSRVYTFEMQIIKAKDNFAGNY-------------------------------- 90

Query: 513 VTCRAENVAGSVTCTATLSLLPESEVTDVMESP 545
             C         +C+  L +   +  T  ++S 
Sbjct: 91  -RCEVTYKDKFDSCSFDLEVHESTGTTPNIDSG 122

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 59.6 bits (144), Expect = 4e-11
 Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 24/115 (20%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT---PMKEGKEV 354
            TV   E +    +V++                      P + W          K GK +
Sbjct: 17  GTVKVGEDITFIAKVKAEDL----------------LRKPTIKWFKGKWMDLASKAGKHL 60

Query: 355 TIYQDTD-----GLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
            + +  +        ++ I +     AG Y C           +  L V E   +
Sbjct: 61  QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 59.2 bits (143), Expect = 6e-11
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTP---TPEVKWFKNG-KEIVSK----------- 255
               +   Q   V     +T  A+         P +KWFK    ++ SK           
Sbjct: 7   GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 256 DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
           +  ++    ++ I +      G Y   V  +      S  + +  +   T
Sbjct: 67  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 29/90 (32%), Positives = 37/90 (41%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           PRFI K       + Q A F C+V     P +TW KD  EL  +  Y+     +   L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542

Query: 67  INPTKEDIGVYTCKATNIGGVATCSANLIV 96
                +D G YT +A N  G       L V
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 2/99 (2%)

Query: 98  EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN 157
             + S   P+F              A     V     P + W++   E+     +   +N
Sbjct: 475 FWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYN 534

Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
               +  L+I+     D+  Y+V+A N++G  E    L 
Sbjct: 535 G--NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 27/165 (16%), Positives = 41/165 (24%), Gaps = 14/165 (8%)

Query: 244 KWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
            W   G              TK+     TK       +  +       +           
Sbjct: 412 PWLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSI 471

Query: 304 ETVMMDVRVESHPTASFQWFIHSEPVV----------VTGKPTPLVTWSHDGTPMKEGKE 353
                D    S     F    +   V           V     P+VTW  D   +K+  +
Sbjct: 472 RDAFWD---RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 528

Query: 354 VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
                +      L I+ V  ++ G Y+  A N  G       L V
Sbjct: 529 YMKRYN-GNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 3/91 (3%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVI 268
           P  +       V +  +         +  P V W K+ +E+            N   L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542

Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
            +      G+Y +R  N  G       + +T
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 63.7 bits (155), Expect = 7e-11
 Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 35/132 (26%)

Query: 399 EEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 458
              + S   P+F              A     V     P + W++   E+     +   +
Sbjct: 474 AFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY 533

Query: 459 NPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAE 518
           N    +  L+I+     D+  Y                                 T RA+
Sbjct: 534 NG--NDYGLTINRVKGDDKGEY---------------------------------TVRAK 558

Query: 519 NVAGSVTCTATL 530
           N  G+      L
Sbjct: 559 NSYGTKEEIVFL 570

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 9/98 (9%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE----HYLITTVESVS 62
              +  ++              +V       + W K+G EL   +     Y         
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
            L   +  +ED G Y            C A LIV EK+
Sbjct: 68  ILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 7/97 (7%)

Query: 102 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT- 160
           S        PL+           +   V+      + W +   E+  ++     +     
Sbjct: 5   SSGPVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKD 63

Query: 161 -GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
               +L  S+   +D   Y V         +C A L+
Sbjct: 64  GKRHILIFSDVVQEDRGRYQVIT----NGGQCEAELI 96

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 63.9 bits (156), Expect = 7e-13
 Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT- 462
           S        PL+           +   V+      + W +   E+  ++     +     
Sbjct: 5   SSGPVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKD 63

Query: 463 -GECVLSISEATPQDEAVYSVKASSTETK 490
               +L  S+   +D   Y V  +  + +
Sbjct: 64  GKRHILIFSDVVQEDRGRYQVITNGGQCE 92

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-------IETKDN 262
               IV PL+   V     V +  E       +V W KNG E+  +D        +    
Sbjct: 7   GPVLIVTPLEDQQVFVGDRVEMAVE-VSEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65

Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
              L+     ++  G+Y++         +    + +
Sbjct: 66  RHILIFSDVVQEDRGRYQV----ITNGGQCEAELIV 97

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 29/109 (26%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE---- 353
             V   + V M V V                     +    V W  +G  +         
Sbjct: 18  QQVFVGDRVEMAVEV--------------------SEEGAQVMWMKNGVELTREDSFKAR 57

Query: 354 VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
               +D      L  S+V  E+ G Y              A L VEEK+
Sbjct: 58  YRFKKD-GKRHILIFSDVVQEDRGRYQVIT----NGGQCEAELIVEEKQ 101

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
            + + + +            TC+V   P P + W KDG  L          +     L 
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL---------PLPPSPVLI 60

Query: 66 IINPTKEDIGVYTCKATNIGGVATCSANLIV 96
          +     +D G Y+C AT+       S  + +
Sbjct: 61 LPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 72.4 bits (178), Expect = 7e-16
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLV 267
            LE   +V   +   V    TVTL  E    P+P++ W K+G  +             L+
Sbjct: 7   GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPL------PPSPVLI 60

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
           + +   +  G Y     + +   + S +V+I++ E
Sbjct: 61  LPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 11/94 (11%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           E  +     +          TL   V  +P+P I W +    +                 
Sbjct: 9   EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV---------- 58

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
            L + E  PQD+  YS  A ++    +    + +
Sbjct: 59  -LILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 20/108 (18%)

Query: 294 GSVTITVAEAETVMM---DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE 350
           GS   +  E   +++      V    T +           V  +P+P + W  DG P+  
Sbjct: 1   GSSGSSGLEEVQLVVEPEGGAVAPGGTVTLT-------CEVPAQPSPQIHWMKDGVPLPL 53

Query: 351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
                          L + E+ P++ G YSC A +       +  +++
Sbjct: 54  PPSPV----------LILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 44/127 (34%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
           E  +     +          TL   V  +P+P I W +    +                 
Sbjct: 9   EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV---------- 58

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
            L + E  PQD+  Y                                 +C A + +    
Sbjct: 59  -LILPEIGPQDQGTY---------------------------------SCVATHSSHGPQ 84

Query: 526 CTATLSL 532
            +  +S+
Sbjct: 85  ESRAVSI 91

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 80.6 bits (199), Expect = 2e-18
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 14/116 (12%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
           E   PR +E    ++  + +PA   CK EG P PT+ W K G  +   +    +    + 
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65

Query: 63  --TLEIIN-----PTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTK 110
             +L  +       ++ D GVY C A N +G   +  A+L V        A     
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA------AAAHHHH 115

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 58.3 bits (141), Expect = 9e-11
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKL---- 266
            P IV     L+V K    TL  +  G PTP ++W+K G+ + +   + + +   L    
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 267 ------VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
                 V  + ++   G Y     N  GEA  S   ++ VA A
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEA-VSHDASLEVAAA 110

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
            P+  +    +I     PATL     GRPTP+I WY+G E +  D               
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 165 LSI-----SEATPQDEAVYSVKAVNTFGRAECR 192
           L          +  DE VY   A N  G A   
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 13/89 (14%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVT---IYQDTDG---LCKLAISEVFPENAGLYSCTAV 384
             G+PTP + W   G  ++  K+           G     ++        + G+Y C A 
Sbjct: 33  AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVAR 92

Query: 385 NPVGEAVAA-ATLAVEEKEESGEAPKFTK 412
           N +GEAV+  A+L V        A     
Sbjct: 93  NYLGEAVSHDASLEVA------AAAHHHH 115

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 32/160 (20%), Positives = 44/160 (27%), Gaps = 53/160 (33%)

Query: 394 ATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG 453
            +L  E+       P+  +    +I     PATL     GRPTP+I WY+G E +  D  
Sbjct: 1   GSLRQED-----FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKD 55

Query: 454 HTMEFNPTTGECVLSI-----SEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
                        L          +  DE VY                            
Sbjct: 56  DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY---------------------------- 87

Query: 509 QIGDVTCRAENVAGS-VTCTATLSLLPESEVTDVMESPRF 547
                 C A N  G  V+  A+L          V  +   
Sbjct: 88  -----VCVARNYLGEAVSHDASLE---------VAAAAHH 113

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 79.7 bits (197), Expect = 2e-18
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 6   APRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVST 63
           +  F +K++P     +      T ++       + W K+G E+  +   Y+  ++ +  T
Sbjct: 15  STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
           L I   +  D   Y C          CS  L V E
Sbjct: 74  LTISQCSLADDAAYQCVVGG----EKCSTELFVKE 104

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 10/108 (9%)

Query: 197 LRKATTIDKPRVLEAPTIVRPLQALL-VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK 255
           +            ++    + L+    V K   + L  E       EVKW KNG+EI   
Sbjct: 1   MHHHHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMS 59

Query: 256 D----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
                 E+      L I Q +      Y+       G  + S  + + 
Sbjct: 60  GSKYIFESIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 24/104 (23%)

Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
              V++   + + V +                          V W  +G  ++      I
Sbjct: 25  AYQVSKGHKIRLTVEL--------------------ADHDAEVKWLKNGQEIQMSGSKYI 64

Query: 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
           ++       L IS+    +   Y C      G    +  L V+E
Sbjct: 65  FESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVKE 104

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 61.2 bits (149), Expect = 7e-12
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 104 EAPKFTKPLKPVI-AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
           ++  F K L+P           L   +       + W +  +EI         F     +
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSK-YIFESIGAK 71

Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
             L+IS+ +  D+A Y        G  +C   L 
Sbjct: 72  RTLTISQCSLADDAAYQCVV----GGEKCSTELF 101

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 392 AAATLAVEEKEESGEAPKFTKPLKPVI-AEAQSPATLKATVTGRPTPSICWYRGKEEILP 450
                +++EK+    +  F K L+P           L   +       + W +  +EI  
Sbjct: 4   HHHHSSMDEKK----STAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQM 58

Query: 451 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET 489
                  F     +  L+IS+ +  D+A Y       + 
Sbjct: 59  SGSK-YIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC 96

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 82.2 bits (203), Expect = 2e-18
 Identities = 25/193 (12%), Positives = 53/193 (27%), Gaps = 41/193 (21%)

Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK------------LVIKQTT 272
           +D  + + +        ++KW K   +        +    K            L IK   
Sbjct: 15  QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74

Query: 273 KKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV-- 330
                 Y++ + +  G+        + + E               +  +           
Sbjct: 75  TDDQDIYKVSIYDTKGKNVLEKIFDLKIQE-------------RVSKPKISWTCINTTLT 121

Query: 331 --VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
             V     P +    DG  +K  + V  ++ T               +  + CTA N V 
Sbjct: 122 CEVMNGTDPELNLYQDGKHLKLSQRVITHKWT------------TSLSAKFKCTAGNKVS 169

Query: 389 EAVAAATLAVEEK 401
           +  +   ++  EK
Sbjct: 170 KESSVEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 75.7 bits (186), Expect = 4e-16
 Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 31/196 (15%)

Query: 113 KPVIAEAQSPATLK--ATVTGRPTPSICWYRGKEEI----LPDNGHTMEFNPT---TGEC 163
                       L   +         I W +  ++           T +   T       
Sbjct: 7   LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG 66

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
            L I      D+ +Y V   +T G+        L         ++ E  +     +  + 
Sbjct: 67  TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL---------KIQERVS-----KPKIS 112

Query: 224 PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV 283
                 TL  E      PE+  +++GK +            +++  + T   + K++   
Sbjct: 113 WTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQ--------RVITHKWTTSLSAKFKCTA 164

Query: 284 VNEAGEARTSGSVTIT 299
            N+  +  +   V+  
Sbjct: 165 GNKVSKESSVEPVSCP 180

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 24/187 (12%), Positives = 48/187 (25%), Gaps = 37/187 (19%)

Query: 22  QPALFTCK--VEGHPLPTMTWQKDGTELHATEHYLIT---------TVESVSTLEIINPT 70
           Q              +  + W+K   +    +               +    TL+I +  
Sbjct: 15  QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74

Query: 71  KEDIGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT 128
            +D  +Y     +  G  V     +L + E           +  KP I+      TL   
Sbjct: 75  TDDQDIYKVSIYDTKGKNVLEKIFDLKIQE-----------RVSKPKISWTCINTTLTCE 123

Query: 129 VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
           V     P +  Y+  + +                  +   + T    A +   A N   +
Sbjct: 124 VMNGTDPELNLYQDGKHLKLSQR-------------VITHKWTTSLSAKFKCTAGNKVSK 170

Query: 189 AECRANL 195
                 +
Sbjct: 171 ESSVEPV 177

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 26/212 (12%), Positives = 50/212 (23%), Gaps = 63/212 (29%)

Query: 328 PVVVTGKPTPLVTWSHDGTP-----MKEGKEVTIYQDT---DGLCKLAISEVFPENAGLY 379
           P          + W            ++ KE    +DT        L I  +  ++  +Y
Sbjct: 22  PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIY 81

Query: 380 SCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSI 439
             +  +  G+ V      ++ +E         +  KP I+      TL   V     P +
Sbjct: 82  KVSIYDTKGKNVLEKIFDLKIQE---------RVSKPKISWTCINTTLTCEVMNGTDPEL 132

Query: 440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV 499
             Y+  + +                                                   
Sbjct: 133 NLYQDGKHLKLS----------------------------------------------QR 146

Query: 500 LLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
           ++  K T        C A N     +    +S
Sbjct: 147 VITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 11/86 (12%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
           +P +S        TC+V     P +   +DG  L  +             +     T   
Sbjct: 108 KPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLS-----------QRVITHKWTTSL 156

Query: 74  IGVYTCKATNIGGVATCSANLIVLEK 99
              + C A N     +    +   EK
Sbjct: 157 SAKFKCTAGNKVSKESSVEPVSCPEK 182

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
             L  +F E ++   + +   A+  C++       + W K    L   + + +    +  
Sbjct: 16  RALPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARC 73

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
            L+I     ED G Y C      G    SA L V   
Sbjct: 74  ELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 83  NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG 142
           + G     SA L V          KFT+ L+   A   + A L+  ++      + W++G
Sbjct: 2   SSGSSGRTSAMLTVRAL-----PIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKG 54

Query: 143 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
            E +   + H++  +     C L I     +D   Y        G+    A L 
Sbjct: 55  HETLRDGDRHSLRQD--GARCELQIRGLVAEDAGEYLCMC----GKERTSAMLT 102

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 285 NEAGEARTSGSVTITVAEAE--TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWS 342
           +     RTS  +T+     +    + +       TA  +         ++      V W 
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLR-------CELSKMAP--VEWW 52

Query: 343 HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
                +++G   ++ QD    C+L I  +  E+AG Y C      G+   +A L V   
Sbjct: 53  KGHETLRDGDRHSLRQD-GARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 67.0 bits (164), Expect = 8e-14
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 19/124 (15%)

Query: 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV 243
           ++       A L +R                   L+     + +T  L  E +      V
Sbjct: 2   SSGSSGRTSAMLTVRAL----------PIKFTEGLRNEEATEGATAVLRCELSKMA--PV 49

Query: 244 KWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           +W+K  + +   D   +       +L I+    +  G+Y        G+ RTS  +T+  
Sbjct: 50  EWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRA 105

Query: 301 AEAE 304
             + 
Sbjct: 106 MPSG 109

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 67.0 bits (164), Expect = 8e-14
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 447
                +A L V          KFT+ L+   A   + A L+  ++      + W++G E 
Sbjct: 5   SSGRTSAMLTVRAL-----PIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHET 57

Query: 448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK 490
           +   + H++  +     C L I     +D   Y        T 
Sbjct: 58  LRDGDRHSLRQD--GARCELQIRGLVAEDAGEYLCMCGKERTS 98

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 80.1 bits (197), Expect = 4e-18
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL----------- 54
              F++                C+  G P+P + W  +G   +     L           
Sbjct: 21  MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80

Query: 55  --ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
                  + ST+ I    +ED G Y C+A+N       +    V
Sbjct: 81  HATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 73.5 bits (180), Expect = 7e-16
 Identities = 19/122 (15%), Positives = 27/122 (22%), Gaps = 11/122 (9%)

Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP----------- 148
                   F +              L     G P P I W+   +               
Sbjct: 16  PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75

Query: 149 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRV 208
           D  H            +SI     +D   Y  +A N   R        ++         V
Sbjct: 76  DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLV 135

Query: 209 LE 210
           LE
Sbjct: 136 LE 137

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 69.7 bits (170), Expect = 2e-14
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 206 PRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK 265
           PR       V+   +       +V L  E  G+P PE++W+  G+       +  D    
Sbjct: 16  PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75

Query: 266 ----------------LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE 304
                           + I    ++ TG YE R  N+      + +  +    A+
Sbjct: 76  DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 64.7 bits (157), Expect = 1e-12
 Identities = 19/129 (14%), Positives = 27/129 (20%), Gaps = 22/129 (17%)

Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
                   F +              L     G P P I W+   +          +    
Sbjct: 16  PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWD---- 71

Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
                           A Y   A+ST            + I  +  +  G   CRA N  
Sbjct: 72  ------GARLDRVHIHATYHQHAAST------------ISIDTLVEEDTGTYECRASNDP 113

Query: 522 GSVTCTATL 530
                T   
Sbjct: 114 DRNHLTRAP 122

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 12/80 (15%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKE------------VTIYQDTDGLCKLAISEVFPENAGL 378
             G P P + W  +G    +               +           ++I  +  E+ G 
Sbjct: 45  AVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGT 104

Query: 379 YSCTAVNPVGEAVAAATLAV 398
           Y C A N            V
Sbjct: 105 YECRASNDPDRNHLTRAPRV 124

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 81.6 bits (201), Expect = 5e-18
 Identities = 27/193 (13%), Positives = 47/193 (24%), Gaps = 32/193 (16%)

Query: 22  QPALFTC---KVEGHPLPTMTWQKDG-----------------TELHATEHYLITTVESV 61
           +    T    +V   P   ++W K G                  E      + I    + 
Sbjct: 7   ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66

Query: 62  STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS 121
             L +        G Y C+        T   +L V++          +   +       S
Sbjct: 67  FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP------LTLSVHSERSQFPDFS 120

Query: 122 PATLKATVTGRPTPSICWYRGK----EEILPDNGHTMEFNPTTGECVLSISEATPQDEAV 177
             T+  TV   P P + W   +         + G   E + +    V             
Sbjct: 121 VLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS--VAVDLSLPKPWHLP 178

Query: 178 YSVKAVNTFGRAE 190
            +    N    A 
Sbjct: 179 VTCVGKNDKEEAH 191

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 80.8 bits (199), Expect = 1e-17
 Identities = 36/243 (14%), Positives = 62/243 (25%), Gaps = 47/243 (19%)

Query: 298 ITVAEAETVMMD---VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV 354
           +T    E V +     RV   P     WF      +  G+   L+   H      E    
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWF-----KLGPGEEQVLIGRMHHDVIFIEWPFR 55

Query: 355 TIYQ--DTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTK 412
             +    +     L ++     + G Y C       E      L+V +          + 
Sbjct: 56  GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP------LTLSV 109

Query: 413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 472
             +       S  T+  TV   P P + W                               
Sbjct: 110 HSERSQFPDFSVLTVTCTVNAFPHPHVQWLM----------------------------- 140

Query: 473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
              +    +  A++       DG+ SV +   + +     VTC  +N             
Sbjct: 141 --PEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGY 198

Query: 533 LPE 535
           L +
Sbjct: 199 LSQ 201

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 72.0 bits (176), Expect = 1e-14
 Identities = 35/196 (17%), Positives = 52/196 (26%), Gaps = 40/196 (20%)

Query: 227 STVTLEAEY---TGTPTPEVKWFKNGKEIVSK--------------------DIETKDNV 263
             VTL + +   +  P  EV WFK G                          DI    N 
Sbjct: 7   ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66

Query: 264 TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM---DVRVESHPTASF 320
             LV+        G Y  R+    GE   +    ++V +  T+ +     +       + 
Sbjct: 67  FFLVVTAANISHDGNYLCRMKL--GETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTV 124

Query: 321 QWFIHSEPVVVTGKPTPLVTWSH----DGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA 376
                     V   P P V W      +  P      V   +D   L       +     
Sbjct: 125 T-------CTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG-SLSVAVDLSLPKPWH 176

Query: 377 GLYSCTAVNPVGEAVA 392
              +C   N   EA  
Sbjct: 177 LPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 68.5 bits (167), Expect = 2e-13
 Identities = 29/202 (14%), Positives = 50/202 (24%), Gaps = 36/202 (17%)

Query: 115 VIAEAQSPATLKAT---VTGRPTPSICWYRGKEEILPDNGHTMEFN-------------- 157
           V A      TL +    V+  P   + W++            M  +              
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 158 -PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR 216
             +     L ++ A    +  Y  +          + +L            V++  T+  
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLS-----------VVKPLTLSV 109

Query: 217 PLQALLVPKDSTVTLEAEYTGTPTPEVKW-FKNGKEIVSKDIETKDNVTK------LVIK 269
             +    P  S +T+       P P V+W    G E             K       V  
Sbjct: 110 HSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDL 169

Query: 270 QTTKKTTGKYEIRVVNEAGEAR 291
              K           N+  EA 
Sbjct: 170 SLPKPWHLPVTCVGKNDKEEAH 191

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 61.2 bits (148), Expect = 5e-11
 Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 4/86 (4%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQ-KDGTELHATEHYLITTVESVSTLE 65
                  +            TC V   P P + W   +G E   T        E   +L 
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164

Query: 66  II---NPTKEDIGVYTCKATNIGGVA 88
           +    +  K      TC   N    A
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 22/152 (14%), Positives = 39/152 (25%), Gaps = 30/152 (19%)

Query: 417 VIAEAQSPATLKAT---VTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 473
           V A      TL +    V+  P   + W++            M       + +       
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHH-----DVIFIEWP-- 53

Query: 474 PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
                            I    N   L+++       G+  CR +     VT    LS  
Sbjct: 54  -----------FRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLS-- 100

Query: 534 PESEVTDVMESPRFIKTPETAKVMDGQSVLFT 565
                  V++        E ++  D   +  T
Sbjct: 101 -------VVKPLTLSVHSERSQFPDFSVLTVT 125

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 81.2 bits (200), Expect = 6e-18
 Identities = 26/202 (12%), Positives = 50/202 (24%), Gaps = 44/202 (21%)

Query: 13  IQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT-------------- 57
           ++ VV  ++      TC           W+               T              
Sbjct: 1   MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 60

Query: 58  ---VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
               +    L I N   ED   Y C+  +          L+V     +            
Sbjct: 61  SLWDQGNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTAN----------SD 106

Query: 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
                    TL        +PS+     + + +                 LS+S+   QD
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK------------TLSVSQLELQD 154

Query: 175 EAVYSVKAVNTFGRAECRANLV 196
              ++   +    + E + ++V
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIV 176

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 71.2 bits (174), Expect = 2e-14
 Identities = 25/243 (10%), Positives = 56/243 (23%), Gaps = 62/243 (25%)

Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
            +   + +TV +        +  F W   ++  ++          +   + + +  +   
Sbjct: 4   VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILG---NQGSFLTKGPSKLNDRADSRR 60

Query: 357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKP 416
                G   L I  +  E++  Y C   +   E V      +                  
Sbjct: 61  SLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANS-------------D 106

Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
                    TL        +PS+     + + +                 LS+S+   QD
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK------------TLSVSQLELQD 154

Query: 477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPES 536
              +                                 TC        V     + +L   
Sbjct: 155 SGTW---------------------------------TCTVLQNQKKVEFKIDIVVLAFQ 181

Query: 537 EVT 539
           + +
Sbjct: 182 KAS 184

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 69.6 bits (170), Expect = 6e-14
 Identities = 22/192 (11%), Positives = 56/192 (29%), Gaps = 45/192 (23%)

Query: 227 STVTLEAEYTGTPTPEVKWFKNGKEIV--------------------SKDIETKDNVTKL 266
            TV L    +   + +  W  + +  +                    S+          L
Sbjct: 11  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
           +IK    + +  Y   V ++  E +    +   +    T   D  +    + +       
Sbjct: 71  IIKNLKIEDSDTYICEVEDQKEEVQL---LVFGL----TANSDTHLLQGQSLTLT----- 118

Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
             +      +P V          +G +            L++S++  +++G ++CT +  
Sbjct: 119 --LESPPGSSPSVQCRSPRGKNIQGGKT-----------LSVSQLELQDSGTWTCTVLQN 165

Query: 387 VGEAVAAATLAV 398
             +      + V
Sbjct: 166 QKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 67.7 bits (165), Expect = 3e-13
 Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 41/199 (20%)

Query: 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEE-ILPDNGHTMEFNPT-------------- 159
           V+ +      L  T + + +    W    +  IL + G  +   P+              
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ 219
            G   L I     +D   Y            C       +   +       + T +    
Sbjct: 65  QGNFPLIIKNLKIEDSDTY-----------ICEVEDQKEEVQLLVFGLTANSDTHLLQ-- 111

Query: 220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKY 279
                   ++TL  E     +P V+      + +            L + Q   + +G +
Sbjct: 112 ------GQSLTLTLESPPGSSPSVQCRSPRGKNIQGG-------KTLSVSQLELQDSGTW 158

Query: 280 EIRVVNEAGEARTSGSVTI 298
              V+    +      + +
Sbjct: 159 TCTVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 65.8 bits (160), Expect = 1e-12
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
           Q    T +      P++  +    +           ++   TL +     +D G +TC  
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPRGKN----------IQGGKTLSVSQLELQDSGTWTCTV 162

Query: 82  TNIGGVATCSANLIVLEKEES 102
                      +++VL  +++
Sbjct: 163 LQNQKKVEFKIDIVVLAFQKA 183

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 77.8 bits (192), Expect = 9e-18
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH--ATEHYLITTVESVST 63
                ++++   ++  +     C+V       + W K+G E+       Y I        
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
           L I   TK D   Y+   T        SA L V  K 
Sbjct: 66  LIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKS 98

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTK 265
              + + L+         V LE E +      VKWFKNG+EI+        I  +     
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
           L+I+  TK    +Y +         ++S  +++ +   
Sbjct: 66  LIIEGATKADAAEYSV----MTTGGQSSAKLSVDLKSG 99

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 102 SGEAP-KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
           SG +    TK L+   A       L+  V+     ++ W++  EEI+P            
Sbjct: 3   SGSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG 61

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
            + +L I  AT  D A YSV         +  A L 
Sbjct: 62  KKHILIIEGATKADAAEYSVMT----TGGQSSAKLS 93

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 404 SGEAP-KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
           SG +    TK L+   A       L+  V+     ++ W++  EEI+P            
Sbjct: 3   SGSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG 61

Query: 463 GECVLSISEATPQDEAVYSVKASSTETK 490
            + +L I  AT  D A YSV  +  ++ 
Sbjct: 62  KKHILIIEGATKADAAEYSVMTTGGQSS 89

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 27/107 (25%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG--KEVT 355
            T    E V ++  V                     +    V W  +G  +  G      
Sbjct: 17  TTAYCGERVELECEV--------------------SEDDANVKWFKNGEEIIPGPKSRYR 56

Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
           I  +      L I      +A  YS           ++A L+V+ K 
Sbjct: 57  IRVE-GKKHILIIEGATKADAAEYSVMT----TGGQSSAKLSVDLKS 98

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 77.5 bits (191), Expect = 1e-17
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
               +++ ++ H        C++      ++ W +DG +L  +    IT       +E+
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG----EEVEV 64

Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIV 96
           +    D G+Y C  ++  G  T   ++ V
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394
               + W  DG  + E     I  +      + + +  P ++GLY+C   +P G      
Sbjct: 36  DVQSINWLRDGVQLVESNRTRITGEE-----VEVRDSIPADSGLYACVTSSPSGSDTTYF 90

Query: 395 TLAV 398
           ++ V
Sbjct: 91  SVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 57.9 bits (140), Expect = 8e-11
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVT 264
            P   +   +   +++LLV     + L           + W ++G ++V  +        
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEE 61

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
            + ++ +    +G Y     + +G   T  SV ++
Sbjct: 62  -VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 11/97 (11%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 99  KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 158
             E  +       ++ ++        L+  +      SI W R   +++  N   +    
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGE- 60

Query: 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
                 + + ++ P D  +Y+    +  G      ++
Sbjct: 61  -----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 40/131 (30%)

Query: 401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
             E  +       ++ ++        L+  +      SI W R   +++  N   +    
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGE- 60

Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
                 + + ++ P D  +Y                                  C   + 
Sbjct: 61  -----EVEVRDSIPADSGLY---------------------------------ACVTSSP 82

Query: 521 AGSVTCTATLS 531
           +GS T   +++
Sbjct: 83  SGSDTTYFSVN 93

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
              +      V + + +  + TC++   P   + W KDG E+  +   L+   ++V  L 
Sbjct: 13  WIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLV 71

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPL 112
           +     ED G Y C+  +     + S  + V E        +     
Sbjct: 72  LPAVQLEDSGEYLCEIDD----ESASFTVTVTEPP-----VRIIYSG 109

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 64.4 bits (157), Expect = 6e-13
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 208 VLEAPTIV---RPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKD 261
             +  + +        +   +   V L  E    P  EV+W K+G+E+V      ++ +D
Sbjct: 7   GTDVSSWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAEVRWTKDGEEVVESPALLLQKED 65

Query: 262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETV 306
            V +LV+     + +G+Y      E  +   S +VT+T      +
Sbjct: 66  TVRRLVLPAVQLEDSGEYLC----EIDDESASFTVTVTEPPVRII 106

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 30/124 (24%)

Query: 291 RTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE 350
             SG V +     E V++   +                     +P   V W+ DG  + E
Sbjct: 16  YPSGKVYVAAVRLERVVLTCEL--------------------CRPWAEVRWTKDGEEVVE 55

Query: 351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKF 410
              + + ++ D + +L +  V  E++G Y C       +  A+ T+ V E        + 
Sbjct: 56  SPALLLQKE-DTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPP-----VRI 105

Query: 411 TKPL 414
               
Sbjct: 106 IYSG 109

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 19/117 (16%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
              +      V A       L   +  RP   + W +  EE++      ++   T     
Sbjct: 13  WIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTV--RR 69

Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAP-TIVRPLQA 220
           L +     +D   Y  +             +            V E P  I+    +
Sbjct: 70  LVLPAVQLEDSGEYLCEI----DDESASFTVT-----------VTEPPVRIIYSGPS 111

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 3/84 (3%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
              +      V A       L   +  RP   + W +  EE++      ++   T     
Sbjct: 13  WIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTV--RR 69

Query: 467 LSISEATPQDEAVYSVKASSTETK 490
           L +     +D   Y  +       
Sbjct: 70  LVLPAVQLEDSGEYLCEIDDESAS 93

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 76.6 bits (188), Expect = 3e-16
 Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 36/200 (18%)

Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI-------------------ETKDNV 263
           V +D+ V L             W+K     + K+I                   E   + 
Sbjct: 11  VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70

Query: 264 TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM----DVRVESHPTAS 319
             L+ +  T K  G Y + + +E    RT  +V   V +  T       +  V+   + +
Sbjct: 71  GSLLFQMITMKDMGVYTLDMTDENYR-RTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129

Query: 320 FQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLY 379
                      ++      + W  +   ++  + +T+ Q+      L I  +  E+AG Y
Sbjct: 130 LTC--------LSNDIGANIQWLFNSQSLQLTERMTLSQNN---SILRIDPIKREDAGEY 178

Query: 380 SCTAVNPVGEAVAA-ATLAV 398
            C   NPV    +    L +
Sbjct: 179 QCEISNPVSVRRSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 73.5 bits (180), Expect = 4e-15
 Identities = 25/188 (13%), Positives = 44/188 (23%), Gaps = 27/188 (14%)

Query: 22  QPALFTCKVEGHPLPTMTWQKDGTEL--HATEHYLIT--------------TVESVSTLE 65
              L         L    W K  T         ++                 + S  +L 
Sbjct: 15  NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74

Query: 66  IINPTKEDIGVYTCKATNI-GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
               T +D+GVYT   T+        +    V          +    +     +     T
Sbjct: 75  FQMITMKDMGVYTLDMTDENYRRTQATVRFHV-----HQPVTQPFLQVTNTTVKELDSVT 129

Query: 125 LKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
           L          +I W    + +      T+    +    +L I     +D   Y  +  N
Sbjct: 130 LTCLSNDIG-ANIQWLFNSQSLQLTERMTL----SQNNSILRIDPIKREDAGEYQCEISN 184

Query: 185 TFGRAECR 192
                   
Sbjct: 185 PVSVRRSN 192

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 69.7 bits (170), Expect = 9e-14
 Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 31/207 (14%)

Query: 111 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV------ 164
            + P +AE  +   L          +  WY+G    +  +     F P +          
Sbjct: 6   AVPPQVAEDNN-VLLLVHNLPLALGAFAWYKGNTTAI--DKEIARFVPNSNMNFTGQAYS 62

Query: 165 ----------LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI 214
                     L     T +D  VY++   +   R   +A +       + +P +    T 
Sbjct: 63  GREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRT-QATVRFHVHQPVTQPFLQVTNTT 121

Query: 215 VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEI-VSKDIETKDNVTKLVIKQTTK 273
           V+        +  +VTL    +      ++W  N + + +++ +    N + L I    +
Sbjct: 122 VK--------ELDSVTLTCL-SNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKR 172

Query: 274 KTTGKYEIRVVNEAGEARTSGSVTITV 300
           +  G+Y+  + N     R S S+ + +
Sbjct: 173 EDAGEYQCEISNPVSVRR-SNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 67.4 bits (164), Expect = 5e-13
 Identities = 33/256 (12%), Positives = 65/256 (25%), Gaps = 56/256 (21%)

Query: 295 SVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE- 353
           +V   VAE   V++ V        +F W+       +  +    V  S+     +     
Sbjct: 6   AVPPQVAEDNNVLLLVHNLPLALGAFAWY-KGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64

Query: 354 VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKP 413
             IY +      L    +  ++ G+Y+    +       A       +       +    
Sbjct: 65  EIIYSNG----SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQ----PVTQPFLQ 116

Query: 414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT 473
           +     +     TL          +I W    + +      T+                 
Sbjct: 117 VTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTL----------------- 158

Query: 474 PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL 533
                                 N S+L I  I R+  G+  C   N       + ++ L 
Sbjct: 159 --------------------SQNNSILRIDPIKREDAGEYQCEISNPVSVRR-SNSIKL- 196

Query: 534 PESEVTDVMESPRFIK 549
                 D++  P    
Sbjct: 197 ------DIIFDPHHHH 206

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 57.8 bits (139), Expect = 9e-10
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
            +   ++      +      TC         + W  +   L  TE   ++  ++ S L I
Sbjct: 111 TQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLS--QNNSILRI 167

Query: 67  INPTKEDIGVYTCKATNIGGVATC-SANLIVLE 98
               +ED G Y C+ +N   V    S  L ++ 
Sbjct: 168 DPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 24/157 (15%), Positives = 41/157 (26%), Gaps = 27/157 (17%)

Query: 413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 472
            + P +AE  +   L          +  WY+G    +                   I+  
Sbjct: 6   AVPPQVAEDNN-VLLLVHNLPLALGAFAWYKGNTTAIDK----------------EIARF 48

Query: 473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
            P     ++ +A S    I ++G+   LL   IT   +G  T    +     T       
Sbjct: 49  VPNSNMNFTGQAYSGREIIYSNGS---LLFQMITMKDMGVYTLDMTDENYRRTQATV--- 102

Query: 533 LPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVG 569
                        +         V +  SV  T    
Sbjct: 103 ----RFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSN 135

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 77.6 bits (190), Expect = 4e-16
 Identities = 34/252 (13%), Positives = 66/252 (26%), Gaps = 29/252 (11%)

Query: 297 TITVAEAETVMMDVRV---ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE 353
            + V    TV +                W   + P   T        W  +G    E   
Sbjct: 11  EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 70

Query: 354 VT---------IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG---EAVAAATLAVEEK 401
                                L ++ V P++ G Y C            + A ++ ++  
Sbjct: 71  YKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT 130

Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
             +          + V  +  +  T+    T     ++ WY G      +N  T  + P 
Sbjct: 131 GHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFF--ENYETGTYQPL 188

Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
             +    I+  + +     S   +              L+I        G V C      
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARN------------LVIRAAKITDAGRVWCELATGQ 236

Query: 522 GSVTCTATLSLL 533
           G +    + ++L
Sbjct: 237 GELDADRSSTIL 248

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 73.8 bits (180), Expect = 7e-15
 Identities = 26/237 (10%), Positives = 54/237 (22%), Gaps = 54/237 (22%)

Query: 14  QPVVSHQEQPALFTCKV---EGHPLPTMTWQKDGTELHATEHYLIT-------------- 56
             V  H        C          P ++W K  +   +T+ +                 
Sbjct: 10  TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69

Query: 57  ---------------TVESVSTLEIINPTKEDIGVYTCKATNIGG---VATCSANLIVLE 98
                             +  TL + +   +D G Y C+             + ++++  
Sbjct: 70  SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129

Query: 99  KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 158
              +          + V  +  +  T+    T     ++ WY G          T +   
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLA 189

Query: 159 T-------------------TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
                               +G   L I  A   D      +     G  +   +  
Sbjct: 190 NKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 68.4 bits (166), Expect = 4e-13
 Identities = 35/254 (13%), Positives = 56/254 (22%), Gaps = 72/254 (28%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYT---GTPTPEVKWFKNGKEIVSKDIE---------- 258
            T+      + V    TV L   Y     T  P + W K      S  +           
Sbjct: 3   MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62

Query: 259 ----------------------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAG---EARTS 293
                                        L +     +  G+Y  +V   +        +
Sbjct: 63  LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122

Query: 294 GSVTITVAEA-------ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT 346
            SV + V           +    V+V+     +            T      VTW    T
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMT-------CPCTDCANANVTWYTGPT 175

Query: 347 PMKEGKEVTIYQDT--------------------DGLCKLAISEVFPENAGLYSCTAVNP 386
             +  +  T                          G   L I      +AG   C     
Sbjct: 176 FFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATG 235

Query: 387 VGEAVAAATLAVEE 400
            GE  A  +  + +
Sbjct: 236 QGELDADRSSTILK 249

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 65.7 bits (159), Expect = 3e-12
 Identities = 14/113 (12%), Positives = 25/113 (22%), Gaps = 21/113 (18%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS---- 62
              +   + V   +      TC         +TW    T     E      + + +    
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196

Query: 63  -----------------TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
                             L I      D G   C+     G      +  +L+
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 65.3 bits (158), Expect = 4e-12
 Identities = 31/246 (12%), Positives = 50/246 (20%), Gaps = 56/246 (22%)

Query: 109 TKPLKPVIAEAQSPATLKATVT---GRPTPSICWYRGKEEILPDNGHTMEFN-------- 157
                 V   A     L  +         P I W +G             +N        
Sbjct: 6   RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65

Query: 158 -------------------PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
                                     L ++   PQD   Y  +      R E       +
Sbjct: 66  VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGL--DAK 123

Query: 199 KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE 258
                           V   + + V + + +T+    T      V W+       + +  
Sbjct: 124 SVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG 183

Query: 259 TK------------------------DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
           T                              LVI+       G+    +    GE     
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243

Query: 295 SVTITV 300
           S TI  
Sbjct: 244 SSTILK 249

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 50.3 bits (119), Expect = 4e-07
 Identities = 19/161 (11%), Positives = 40/161 (24%), Gaps = 9/161 (5%)

Query: 411 TKPLKPVIAEAQSPATLKATVT---GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
                 V   A     L  +         P I W +G             +N        
Sbjct: 6   RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
             S++  +    +  +AS      + +     L ++ +     G   C+    +      
Sbjct: 66  VESDSYKESFGDFLGRAS------VANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFG 119

Query: 528 ATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
                +          +   + T E  +V +G  +  T   
Sbjct: 120 LDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC 160

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 73.4 bits (180), Expect = 6e-16
 Identities = 23/101 (22%), Positives = 31/101 (30%), Gaps = 8/101 (7%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVES-- 60
           V  P  I   Q   +   +     C +   P P  + W      L +      T      
Sbjct: 11  VNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST 70

Query: 61  ----VSTLEIINPTKEDIG-VYTCKATNIGGVATCSANLIV 96
               +STL I N  + D   +Y C A N  G  T    L  
Sbjct: 71  EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 58.4 bits (141), Expect = 9e-11
 Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 13/122 (10%)

Query: 86  GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKE 144
           G +  S  L V         P  +   +   A       +K  +   P P  I W   + 
Sbjct: 1   GSSGSSGTLTV------NGPPIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN 53

Query: 145 EILPDNGH----TMEFNPTTGECVLSISEATPQDEA-VYSVKAVNTFGRAECRANLVLRK 199
            +                      L+IS     D   +Y+  A N+FG       L  + 
Sbjct: 54  VLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113

Query: 200 AT 201
           + 
Sbjct: 114 SE 115

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 56.8 bits (137), Expect = 4e-10
 Identities = 29/146 (19%), Positives = 41/146 (28%), Gaps = 38/146 (26%)

Query: 388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKE 446
           G + ++ TL V         P  +   +   A       +K  +   P P  I W   + 
Sbjct: 1   GSSGSSGTLTVNG------PPIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN 53

Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
            +                               Y+V     ET    +G  S L IS I 
Sbjct: 54  VLESGTSGR------------------------YTV-----ETISTEEGVISTLTISNIV 84

Query: 507 RDQIGDV-TCRAENVAGSVTCTATLS 531
           R     +  C A N  GS T    L 
Sbjct: 85  RADFQTIYNCTAWNSFGSDTEIIRLK 110

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 49.9 bits (119), Expect = 9e-08
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 14/125 (11%)

Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPL-VTWSHDGT 346
           G + +SG++T+      +               +         +   P P  + WS    
Sbjct: 1   GSSGSSGTLTVNGPPIISSTQTQHALHGEKGQIK-------CFIRSTPPPDRIAWSWKEN 53

Query: 347 PMKEGKE--VTIYQDTDG---LCKLAISEVFPE-NAGLYSCTAVNPVGEAVAAATLAVEE 400
            ++ G     T+   +     +  L IS +       +Y+CTA N  G       L  + 
Sbjct: 54  VLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113

Query: 401 KEESG 405
            E SG
Sbjct: 114 SEMSG 118

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 11/103 (10%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPE-VKWFKNGKEI---------VSKDIETK 260
            P I+   Q           ++     TP P+ + W      +         V      +
Sbjct: 13  GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72

Query: 261 DNVTKLVIKQTTKK-TTGKYEIRVVNEAGEARTSGSVTITVAE 302
             ++ L I    +      Y     N  G       +    +E
Sbjct: 73  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 72.0 bits (177), Expect = 8e-16
 Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 9/92 (9%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           +   +            +  C   G P+P   W K+   L         T E+     +
Sbjct: 4  LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETKKLYMV 54

Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
               E  G Y C   N           I+++
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 67.0 bits (164), Expect = 4e-14
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQT 271
             I     +  +   ST+ L+    G+P P  +WFKN   +      T +     ++   
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKLYMVPYV 57

Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
             +  G Y   V N+      S  V I + E
Sbjct: 58  DLEHQGTYWCHVYNDRDSQ-DSKKVEIIIDE 87

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 9/94 (9%), Positives = 22/94 (23%), Gaps = 11/94 (11%)

Query: 103 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
           G   +             S   L+    G P P   W++ +  +  +             
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------- 51

Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
               +     + +  Y     N     + +   +
Sbjct: 52  --YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEI 83

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 11/73 (15%)

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
            V  G P P   W  +  P+    +              +  V  E+ G Y C   N   
Sbjct: 25  CVAVGSPIPHYQWFKNELPLTHETKKL----------YMVPYVDLEHQGTYWCHVYNDRD 74

Query: 389 EAVA-AATLAVEE 400
              +    + ++E
Sbjct: 75  SQDSKKVEIIIDE 87

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 8/82 (9%), Positives = 19/82 (23%), Gaps = 11/82 (13%)

Query: 405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 464
           G   +             S   L+    G P P   W++ +  +  +             
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------- 51

Query: 465 CVLSISEATPQDEAVYSVKASS 486
               +     + +  Y     +
Sbjct: 52  --YMVPYVDLEHQGTYWCHVYN 71

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 75.2 bits (184), Expect = 1e-15
 Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 14/182 (7%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
              ++        TC   G   P  +W+     + +  +  +T   + STL +   +  +
Sbjct: 9   SRYLAQIGDSVSLTCSTTGCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGN 65

Query: 74  IGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-- 131
              Y C AT           + +         PK  +       EA  P T+K +V    
Sbjct: 66  EHSYLCTATCESRKLEKGIQVEIYSF------PKDPEIHLSGPLEAGKPITVKCSVADVY 119

Query: 132 -RPTPSICWYRGKEEILPDN--GHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
                 I   +G   +            +  T    ++ +        V   +A      
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179

Query: 189 AE 190
            +
Sbjct: 180 MD 181

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 65.2 bits (158), Expect = 3e-12
 Identities = 27/203 (13%), Positives = 59/203 (29%), Gaps = 11/203 (5%)

Query: 215 VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKK 274
             P    L     +V+L    TG  +P   W       ++  +  +   + L +   +  
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64

Query: 275 TTGKYEIRVVNEAGEARTSGSVTI-TVAEAETVMMDVRVESHPTASFQ-WFIHSEPVVVT 332
               Y      E+ +      V I +  +   + +   +E+    + +       P    
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPF--- 121

Query: 333 GKPTPLVTWSHDGTPMKEG---KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
                 +        MK     ++           ++  + V  +   +  C A   + E
Sbjct: 122 --DRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179

Query: 390 AVAAATLAVEEKEES-GEAPKFT 411
             +  T+    KE     +PK T
Sbjct: 180 MDSVPTVRQAVKELQVYISPKNT 202

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 57.9 bits (139), Expect = 9e-10
 Identities = 35/221 (15%), Positives = 61/221 (27%), Gaps = 46/221 (20%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
             TG  +P  +W         GK      +      L ++ V   N   Y CTA     +
Sbjct: 24  STTGCESPFFSWRTQIDSPLNGK----VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK 79

Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG---RPTPSICWYRGKE 446
                 + +         PK  +       EA  P T+K +V          I   +G  
Sbjct: 80  LEKGIQVEIYSF------PKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDH 133

Query: 447 EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT 506
            +                            E +      S ETK +       +  + + 
Sbjct: 134 LM-------------------------KSQEFLEDADRKSLETKSLE------VTFTPVI 162

Query: 507 RDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRF 547
            D    + CRA+     +   +  ++    +   V  SP+ 
Sbjct: 163 EDIGKVLVCRAKLHIDEM--DSVPTVRQAVKELQVYISPKN 201

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 17/156 (10%), Positives = 40/156 (25%), Gaps = 47/156 (30%)

Query: 413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 472
           P    +A+     +L  + TG  +P   W    +                          
Sbjct: 7   PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQID-------------------------- 40

Query: 473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
                       S    K+  +G  S L ++ ++        C A   +  +     +  
Sbjct: 41  ------------SPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV-- 86

Query: 533 LPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQV 568
                  ++   P+  +   +  +  G+ +     V
Sbjct: 87  -------EIYSFPKDPEIHLSGPLEAGKPITVKCSV 115

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 6   APRFIEKIQPVVSHQE---QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
            P  I   Q  VS      +  + TC++        TW KDG ++  +E  ++       
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKH 65

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
            L +     +D G + C+        +    + V +  
Sbjct: 66  RLILPEAKVQDSGEFECRTEG----VSAFFGVTVQDPS 99

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 288 GEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
           G + +SG V I   +     + +   +                   +     TW  DG  
Sbjct: 1   GSSGSSGPVHILSPQD---KVSLTFTTSERVVLT--------CELSRVDFPATWYKDGQK 49

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
           ++E + + +  D     +L + E   +++G + C          A   + V++  
Sbjct: 50  VEESELLVVKMD-GRKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQDPS 99

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 58.2 bits (141), Expect = 8e-11
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 212 PTIVRP--LQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKL 266
             I+ P    +L       V L  E +        W+K+G+++   +   ++      +L
Sbjct: 9   VHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRL 67

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAET 305
           ++ +   + +G++E R             VT+      +
Sbjct: 68  ILPEAKVQDSGEFECR----TEGVSAFFGVTVQDPSGPS 102

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 7/92 (7%)

Query: 403 ESGEAP--KFTKPLKPVIAEAQ--SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 458
            SG +       P   V           L   ++        WY+  +++       ++ 
Sbjct: 2   SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKM 60

Query: 459 NPTTGECVLSISEATPQDEAVYSVKASSTETK 490
           +       L + EA  QD   +  +       
Sbjct: 61  DGRK--HRLILPEAKVQDSGEFECRTEGVSAF 90

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 7/94 (7%)

Query: 101 ESGEAP--KFTKPLKPVIAEAQ--SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF 156
            SG +       P   V           L   ++        WY+  +++       ++ 
Sbjct: 2   SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKM 60

Query: 157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE 190
           +       L + EA  QD   +  +         
Sbjct: 61  DGRK--HRLILPEAKVQDSGEFECRTEGVSAFFG 92

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 72.7 bits (178), Expect = 3e-15
 Identities = 27/178 (15%), Positives = 48/178 (26%), Gaps = 29/178 (16%)

Query: 130 TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV-----LSISEATPQDEAVYSVKAVN 184
                  + W RG   +         F  +    +     L I   T  D   Y+V   +
Sbjct: 23  MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82

Query: 185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK 244
           T G       L LR    + KP +                + S  TL  E       E+K
Sbjct: 83  TNGTRILNKALDLRILEMVSKPMI--------------YWECSNATLTCEVLEGTDVELK 128

Query: 245 WFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
            ++  + + S          +  +          ++ + VN   +        +   E
Sbjct: 129 LYQGKEHLRSLR--------QKTMSYQWTNLRAPFKCKAVNRVSQESE--MEVVNCPE 176

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 70.8 bits (173), Expect = 2e-14
 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 22/154 (14%)

Query: 31  EGHPLPTMTWQKDGTELHATEHYLITTVESVS-------TLEIINPTKEDIGVYTCKATN 83
               +  + W++  T +   +  +   ++S +        L+I N T++D G Y     +
Sbjct: 23  MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82

Query: 84  IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK 143
             G    +  L +   E            KP+I    S ATL   V       +  Y+GK
Sbjct: 83  TNGTRILNKALDLRILE---------MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGK 133

Query: 144 EEILPDNGHTMEFNPTTG----ECVLS--ISEAT 171
           E +      TM +  T      +C     +S+ +
Sbjct: 134 EHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 167

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 68.8 bits (168), Expect = 8e-14
 Identities = 24/186 (12%), Positives = 52/186 (27%), Gaps = 31/186 (16%)

Query: 225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK----------LVIKQTTKK 274
               + +          EV+W +    +     + K  +            L IK  T+ 
Sbjct: 12  HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD 71

Query: 275 TTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK 334
            +G Y + V +  G    + ++ + + E   V   +       A+           V   
Sbjct: 72  DSGTYNVTVYSTNGTRILNKALDLRILE--MVSKPMIYWECSNATLT-------CEVLEG 122

Query: 335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394
               +        ++  ++ T+            S  +      + C AVN V +     
Sbjct: 123 TDVELKLYQGKEHLRSLRQKTM------------SYQWTNLRAPFKCKAVNRVSQESEME 170

Query: 395 TLAVEE 400
            +   E
Sbjct: 171 VVNCPE 176

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 21/158 (13%)

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK------LAISEVFPENAGLYSC 381
           P          V W    T + E K         G  +      L I  +  +++G Y+ 
Sbjct: 19  PNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNV 78

Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW 441
           T  +  G  +    L +   E            KP+I    S ATL   V       +  
Sbjct: 79  TVYSTNGTRILNKALDLRILE---------MVSKPMIYWECSNATLTCEVLEGTDVELKL 129

Query: 442 YRGKEEILPDNGHTMEFNPTTG----ECVLS--ISEAT 473
           Y+GKE +      TM +  T      +C     +S+ +
Sbjct: 130 YQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 167

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 11/81 (13%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
           +P++  +   A  TC+V       +   +    L            S+    +       
Sbjct: 103 KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL-----------RSLRQKTMSYQWTNL 151

Query: 74  IGVYTCKATNIGGVATCSANL 94
              + CKA N     +    +
Sbjct: 152 RAPFKCKAVNRVSQESEMEVV 172

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 73.4 bits (179), Expect = 4e-15
 Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 27/184 (14%)

Query: 226 DSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVN 285
           D +V L           + WFK+GK I     + K    K  +    K   G Y+ +   
Sbjct: 18  DGSVLLT---CDAEAKNITWFKDGKMIGFLTEDKK----KWNLGSNAKDPRGMYQCKGSQ 70

Query: 286 EAGEARTSGSVTITVAEAETVMMDVRVESHPTAS-----------------FQWFIHSEP 328
              +         +  +A+             A                  ++  I    
Sbjct: 71  NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTT 130

Query: 329 VVVT--GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP 386
           V++T    P   + W H+   +   ++       +    L       E +G Y C     
Sbjct: 131 VILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL-KEFSELEQSGYYVCYPRGS 189

Query: 387 VGEA 390
             E 
Sbjct: 190 KPED 193

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 66.8 bits (162), Expect = 8e-13
 Identities = 33/202 (16%), Positives = 57/202 (28%), Gaps = 34/202 (16%)

Query: 17  VSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGV 76
              ++   L TC         +TW KDG  +           E      + +  K+  G+
Sbjct: 14  DYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT-------EDKKKWNLGSNAKDPRGM 63

Query: 77  YTCKATNIGGVATC------SANLIVLEKEESGEAPKFTKPLKPVIAEAQ----SPATLK 126
           Y CK +              SA+    +  +  +A K            +    +    K
Sbjct: 64  YQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK 123

Query: 127 ATVTGR---------PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP-QDEA 176
            +++G          P   I W    + I  D       +    E  LS+ E +  +   
Sbjct: 124 VSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGS---DEDHLSLKEFSELEQSG 180

Query: 177 VYSVKAVNTFGRAECRANLVLR 198
            Y      +         L LR
Sbjct: 181 YYVCYPRGSKPEDA-NFYLYLR 201

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 61.8 bits (149), Expect = 3e-11
 Identities = 20/180 (11%), Positives = 42/180 (23%), Gaps = 26/180 (14%)

Query: 131 GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA- 189
                +I W++  + I                   ++         +Y  K      +  
Sbjct: 26  DAEAKNITWFKDGKMIGFLTEDKK---------KWNLGSNAKDPRGMYQCKGSQNKSKPL 76

Query: 190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT------------- 236
           +    +        D  +  +A             ++     +  Y              
Sbjct: 77  QVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP 136

Query: 237 GTPTPEVKWFKNGKEIV--SKDIETKDNVTKLVIKQTTKKT-TGKYEIRVVNEAGEARTS 293
             P  E+ W  N K I     D     +   L +K+ ++   +G Y         E    
Sbjct: 137 QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 56.1 bits (134), Expect = 3e-09
 Identities = 25/210 (11%), Positives = 46/210 (21%), Gaps = 62/210 (29%)

Query: 333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV- 391
                 +TW  DG  +    E           K  +     +  G+Y C       + + 
Sbjct: 26  DAEAKNITWFKDGKMIGFLTEDKK--------KWNLGSNAKDPRGMYQCKGSQNKSKPLQ 77

Query: 392 -----AAATLAVEEKEESGEAPKFTKPLKPVIAEAQ----SPATLKATVTGR-------- 434
                 +A  A ++  +  +A K            +    +    K +++G         
Sbjct: 78  VYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ 137

Query: 435 -PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT 493
            P   I W    + I  D                                      K + 
Sbjct: 138 YPGSEILWQHNDKNIGGDEDD-----------------------------------KNIG 162

Query: 494 DGNRSVLLISKITRDQIGDVTCRAENVAGS 523
                + L      +Q G   C        
Sbjct: 163 SDEDHLSLKEFSELEQSGYYVCYPRGSKPE 192

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 72.2 bits (177), Expect = 4e-15
 Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 33/187 (17%)

Query: 6   APRFIEKIQPVVSH--QEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVS 62
            P+ + K++P   +  QE     TC+    P   ++ W  +G  +               
Sbjct: 2   PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP----------THTQ 51

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
                     D G YTC+        +   +L VL +          +       E +  
Sbjct: 52  PSYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFE------WLVLQTPHLEFQEGE-T 102

Query: 123 ATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
             L+  +   +P   + +++        NG + +F+        SI +A       Y   
Sbjct: 103 IMLRCHSWKDKPLVKVTFFQ--------NGKSQKFSHLDPT--FSIPQANHSHSGDYHCT 152

Query: 182 AVNTFGR 188
               +  
Sbjct: 153 GNIGYTL 159

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 65.6 bits (160), Expect = 9e-13
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 35/173 (20%)

Query: 223 VPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
           V ++ +VTL  +   +P  + ++WF NG  I +               +     +G+Y  
Sbjct: 16  VLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT-------QPSYRFKANNNDSGEYT- 67

Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-----GKPT 336
               + G+   S  V +TV     V+               F   E +++       KP 
Sbjct: 68  ---CQTGQTSLSDPVHLTVLFEWLVLQ---------TPHLEFQEGETIMLRCHSWKDKPL 115

Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
             VT+  +G   K       +   D     +I +    ++G Y CT       
Sbjct: 116 VKVTFFQNGKSQK-------FSHLDP--TFSIPQANHSHSGDYHCTGNIGYTL 159

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 20/197 (10%), Positives = 44/197 (22%), Gaps = 65/197 (32%)

Query: 331 VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
               P    + W H+G  +    + +              +    ++G Y+C        
Sbjct: 28  GARSPESDSIQWFHNGNLIPTHTQPSY-----------RFKANNNDSGEYTCQTGQTSLS 76

Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEI 448
                 L V  +          +       E +    L+  +   +P   + +++     
Sbjct: 77  D--PVHLTVLFE------WLVLQTPHLEFQEGE-TIMLRCHSWKDKPLVKVTFFQ----- 122

Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
              NG + +F+        SI +A       Y                            
Sbjct: 123 ---NGKSQKFSHLDPT--FSIPQANHSHSGDY---------------------------- 149

Query: 509 QIGDVTCRAENVAGSVT 525
                 C         +
Sbjct: 150 -----HCTGNIGYTLFS 161

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 9/88 (10%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESV 61
            VL    + +   +   + +  +  C      PL  +T+ ++G                 
Sbjct: 82  TVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK--------FSHLD 133

Query: 62  STLEIINPTKEDIGVYTCKATNIGGVAT 89
            T  I        G Y C       + +
Sbjct: 134 PTFSIPQANHSHSGDYHCTGNIGYTLFS 161

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 72.6 bits (177), Expect = 2e-14
 Identities = 26/274 (9%), Positives = 62/274 (22%), Gaps = 68/274 (24%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKV---EGHPLPTMTWQKDGTELHATEHYLI-------- 55
           P        +  H  +  L  C V   E   +  + W     +  A+E+ L         
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 56  ------------TTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESG 103
                        T  +  +L + +  K D G+YTC+             + +       
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV----- 120

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILPD----------- 149
                 +  + +         ++ ++          + W         +           
Sbjct: 121 ----LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176

Query: 150 -----------NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
                      N   +  + +  +  + +      D+ +Y+         +     L   
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL--- 233

Query: 199 KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE 232
                    V++              K     L 
Sbjct: 234 --------HVVQDEFQRTISPTPPTDKGQQGILN 259

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 69.1 bits (168), Expect = 3e-13
 Identities = 29/244 (11%), Positives = 61/244 (25%), Gaps = 53/244 (21%)

Query: 207 RVLEAPTIVRPLQALLVPKDSTVTLEAEYT---GTPTPEVKWFKNGKEIVSKDI------ 257
           R    P +      L V    +V +              V W  +  +  + +       
Sbjct: 1   RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60

Query: 258 ------------------ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
                                ++ + L+++   K   G Y   +  +         V + 
Sbjct: 61  NLSVPTGRFQNRSHLVGDTFHNDGS-LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119

Query: 300 VAEAETVMMDVRV-------------ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT 346
           V   E   + VRV             E        W   S            V       
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGS----HTEEETVLSYDSNM 175

Query: 347 PMKEGKEVTIYQD--------TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
              + + +  +++        +     + +  V   + G+Y+C+      E+     L V
Sbjct: 176 RSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235

Query: 399 EEKE 402
            + E
Sbjct: 236 VQDE 239

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 66.4 bits (161), Expect = 3e-12
 Identities = 28/259 (10%), Positives = 68/259 (26%), Gaps = 34/259 (13%)

Query: 297 TITVAEAETVMMD---VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE 353
            + V   E+V+M     R E        W    +        +  V + +    +  G+ 
Sbjct: 14  QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKD----KDDASEYVLFYYSNLSVPTGRF 69

Query: 354 ---VTIYQDTD-GLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPK 409
                +  DT      L + +V   + G+Y+C         V    + +           
Sbjct: 70  QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV--------- 120

Query: 410 FTKPLKPVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILPDNGHTMEFNPTTGECV 466
             +  + +         ++ ++          + W         +       +       
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDS------- 173

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
            ++     Q    +  +   T      DG+   + +  +     G  TC           
Sbjct: 174 -NMRSGKFQSLGRFRNRVDLTGDISRNDGS---IKLQTVKESDQGIYTCSIYVGKLESRK 229

Query: 527 TATLSLLPESEVTDVMESP 545
           T  L ++ +     +  +P
Sbjct: 230 TIVLHVVQDEFQRTISPTP 248

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 55.6 bits (133), Expect = 9e-09
 Identities = 24/251 (9%), Positives = 56/251 (22%), Gaps = 65/251 (25%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVT---GRPTPSICWYRGKEEILPD------------- 149
           P  T     +         +   V     +    + W   K++                 
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 150 -----NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID 204
                N   +  +    +  L + +    DE +Y+ +          +  + L       
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW------ 119

Query: 205 KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE---VKWFKNG------------ 249
                    +    + L V    T  +      T       V W  +             
Sbjct: 120 --------VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSY 171

Query: 250 ---------------KEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG 294
                          +  V    +   N   + ++   +   G Y   +     E+R + 
Sbjct: 172 DSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTI 231

Query: 295 SVTITVAEAET 305
            + +   E + 
Sbjct: 232 VLHVVQDEFQR 242

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.6 bits (178), Expect = 5e-14
 Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 1/103 (0%)

Query: 12  KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK 71
           K     +H        C  +   +  +       ++ +       +V +   L       
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN-GDLFFKKVQV 310

Query: 72  EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKP 114
           ED GVYTC A       T S  L V      G          P
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADP 353

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 2/86 (2%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
              +    V  S     +            +G   L   +V  E+ G+Y+C A+      
Sbjct: 270 TKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNE 327

Query: 391 VAAATLAVEEKEESGEAPKFTKPLKP 416
             +  L V      G          P
Sbjct: 328 TLSVELKVYNFTLHGHHDTLNAAADP 353

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 14/124 (11%), Positives = 28/124 (22%), Gaps = 3/124 (2%)

Query: 88  ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL 147
             C  +  +                    A      T++     +    +      E++L
Sbjct: 229 LYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVL 288

Query: 148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
               +            L   +   +D  VY+  A+           L +   T      
Sbjct: 289 SQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHD 345

Query: 208 VLEA 211
            L A
Sbjct: 346 TLNA 349

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 10/108 (9%)

Query: 217 PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNV--TKLVIKQTTKK 274
              A       T+T+  +       +V    + ++++S+      +V    L  K+   +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311

Query: 275 TTGKYEIRVVNEAGEARTSGSVTITV------AEAETVMMDVRVESHP 316
             G Y    + E      + SV + V         +T+       SHP
Sbjct: 312 DGGVYTCYAMGETFNE--TLSVELKVYNFTLHGHHDTLNAAADPWSHP 357

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 66.0 bits (161), Expect = 1e-13
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 7  PRFIEKIQPVVSHQE-QPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
               + Q   S +      F C  +   P  T+ W +       +       ++    L
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-----MDFNGIL 64

Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
           I N    D G Y C  +N+  +   +A L V
Sbjct: 65 TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 54.8 bits (132), Expect = 9e-10
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
             +  P   + W+         + +    D +G+  L I  V P +AG Y CT  N    
Sbjct: 34  AKSKSPAYTLVWTRLHNGKLPSRAM----DFNGI--LTIRNVQPSDAGTYVCTGSNMFAM 87

Query: 390 AVAAATLAVE 399
               ATL V+
Sbjct: 88  DQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 104 EAPKFT-KPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           +    T +  +       +  T      +  P  ++ W R     LP     M+FN    
Sbjct: 8   KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--SRAMDFNGI-- 63

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
              L+I    P D   Y     N F   +  A L 
Sbjct: 64  ---LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 49.8 bits (119), Expect = 7e-08
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 211 APTIVRPLQALLVPKDSTVTLE--AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVI 268
               V   ++  V   + VT    A+ + +P   + W +     +       + +  L I
Sbjct: 10  IMVTVEEQRSQSVRPGADVTFICTAK-SKSPAYTLVWTRLHNGKLPSRAMDFNGI--LTI 66

Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           +       G Y     N     + + ++ + V
Sbjct: 67  RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 21/128 (16%), Positives = 31/128 (24%), Gaps = 42/128 (32%)

Query: 406 EAPKFT-KPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
           +    T +  +       +  T      +  P  ++ W R     LP     M+FN    
Sbjct: 8   KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--SRAMDFNGI-- 63

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
              L+I    P D   Y                                  C   N+   
Sbjct: 64  ---LTIRNVQPSDAGTY---------------------------------VCTGSNMFAM 87

Query: 524 VTCTATLS 531
              TATL 
Sbjct: 88  DQGTATLH 95

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 25/83 (30%), Positives = 35/83 (42%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
           Q V   +     F C+ +G P P + W      L + +     TV    TLE+     +D
Sbjct: 393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQD 452

Query: 74  IGVYTCKATNIGGVATCSANLIV 96
            G Y C A N GG  +  A+L V
Sbjct: 453 NGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 20/108 (18%)

Query: 291 RTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE 350
           R   +  + V E  TV    R +  P  +  W +     +V+ K    +T   DGT    
Sbjct: 388 RDRKAQQVFVDEGHTVQFVCRADGDPPPAILW-LSPRKHLVSAKSNGRLTVFPDGT---- 442

Query: 351 GKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
                          L +     ++ G Y C A N  G     A L V
Sbjct: 443 ---------------LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK---L 266
            A    R  Q + V +  TV       G P P + W    K +VS     +  V     L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
            ++    +  G Y     N  G    S    + V
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGND--SMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 447 EILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI 505
           ++  D GHT++F     G+   +I   +P+   V +   S+    +  DG    L +   
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSA--KSNGRLTVFPDG---TLEVRYA 448

Query: 506 TRDQIGDVTCRAENVAGSVTCTATL 530
                G   C A N  G+ +  A L
Sbjct: 449 QVQDNGTYLCIAANAGGNDSMPAHL 473

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 25/187 (13%), Positives = 52/187 (27%), Gaps = 33/187 (17%)

Query: 6   APRFIEKIQPVVS--HQEQPALFTCKVEGHPLPTMT-WQKDGTELHATEHYLITTVESVS 62
            P+ +  ++P      ++      C+    P    T W  + + +              S
Sbjct: 5   LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS----------SQAS 54

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
           +  I   T  D G Y C+        +    L V             +  + V  E    
Sbjct: 55  SYFIDAATVNDSGEYRCQTNL--STLSDPVQLEVH------IGWLLLQAPRWVFKEEDP- 105

Query: 123 ATLK-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
             L+  +        + + +        NG   ++     +    I +AT +D   Y  +
Sbjct: 106 IHLRCHSWKNTALHKVTYLQ--------NGKDRKYFHHNSD--FHIPKATLKDSGSYFCR 155

Query: 182 AVNTFGR 188
            +     
Sbjct: 156 GLVGSKN 162

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 36/185 (19%)

Query: 223 VPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
           V +  +VTL+ +   +P     +WF N   I S+        +   I   T   +G+Y  
Sbjct: 19  VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA-------SSYFIDAATVNDSGEYRC 71

Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-----GKPT 336
           +          S  V + V     +           A    F   +P+ +          
Sbjct: 72  QTNLSTL----SDPVQLEVHIGWLL---------LQAPRWVFKEEDPIHLRCHSWKNTAL 118

Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAAT 395
             VT+  +G   K       Y   +      I +   +++G Y C  +            
Sbjct: 119 HKVTYLQNGKDRK-------YFHHNS--DFHIPKATLKDSGSYFCRGLVGSKNVSSETVN 169

Query: 396 LAVEE 400
           + + +
Sbjct: 170 ITITQ 174

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESV 61
           EV     + +    V  +E P    C   +   L  +T+ ++G +               
Sbjct: 85  EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK--------YFHHN 136

Query: 62  STLEIINPTKEDIGVYTCKATN-IGGVATCSANLIVLE 98
           S   I   T +D G Y C+       V++ + N+ + +
Sbjct: 137 SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 22/197 (11%), Positives = 42/197 (21%), Gaps = 65/197 (32%)

Query: 331 VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
               P      W H+ + +                   I      ++G Y C        
Sbjct: 31  GAYSPEDNSTQWFHNESLISSQAS-----------SYFIDAATVNDSGEYRCQTNLSTLS 79

Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEI 448
                 L V             +  + V  E      L+  +        + + +     
Sbjct: 80  D--PVQLEVHI------GWLLLQAPRWVFKEEDP-IHLRCHSWKNTALHKVTYLQ----- 125

Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
              NG   ++     +    I +AT +D   Y                            
Sbjct: 126 ---NGKDRKYFHHNSD--FHIPKATLKDSGSY---------------------------- 152

Query: 509 QIGDVTCRAENVAGSVT 525
                 CR    + +V+
Sbjct: 153 -----FCRGLVGSKNVS 164

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 67.5 bits (164), Expect = 5e-13
 Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 22/221 (9%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
           + +      +  +  ++ +  +  C         ++      E          + +S   
Sbjct: 7   IASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKG 65

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
             I +      G+  C+A            ++V              P   +        
Sbjct: 66  FTIPSYMISYAGMVFCEAKINDESYQSIMYIVV--VVGYRIYDVVLSPSHGIELSVGEKL 123

Query: 124 TLKATVTGRPTPSIC--WYRGKEEILPDNGHTMEFNPTTG------ECVLSISEATPQDE 175
            L  T        I   W     +         +    +G         L+I   T  D+
Sbjct: 124 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 183

Query: 176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR 216
            +Y+  A +     +    +           RV E P   R
Sbjct: 184 GLYTCAASSGLMTKKNSTFV-----------RVHEDPIEGR 213

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 66.0 bits (160), Expect = 2e-12
 Identities = 25/208 (12%), Positives = 61/208 (29%), Gaps = 21/208 (10%)

Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKW---FKNGKEIVSKDIETKDNVTK 265
           + + +    +  +   K+ TV +    +      V     +   + +   +  + D+   
Sbjct: 7   IASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKG 65

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH 325
             I        G             ++   + + V           V   P+   +  + 
Sbjct: 66  FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY-----DVVLSPSHGIELSVG 120

Query: 326 SEPVV---VTGKPTPLV--TWSHDGTPMKEGKEV-------TIYQDTDGLCKLAISEVFP 373
            + V+      +    +   W +  +  +  K V       +  +    L  L I  V  
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180

Query: 374 ENAGLYSCTAVNPVGEAVAAATLAVEEK 401
            + GLY+C A + +     +  + V E 
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 21/210 (10%), Positives = 52/210 (24%), Gaps = 23/210 (10%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
            +      +  +         +    +          R  E+    +G+ + ++   G  
Sbjct: 8   ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG-- 65

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLV 223
             +I         +   +A       +    +V+     I          ++ P   + +
Sbjct: 66  -FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI-------YDVVLSPSHGIEL 117

Query: 224 PKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETKDNVTK-----------LVIKQ 270
                + L           +   W     +   K +  +D  T+           L I  
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177

Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
            T+   G Y     +     + S  V +  
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 52.1 bits (124), Expect = 7e-08
 Identities = 24/200 (12%), Positives = 47/200 (23%), Gaps = 34/200 (17%)

Query: 335 PTPLVTWSH---DGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV 391
               V+      +   + +G  ++ +    G     I       AG+  C A        
Sbjct: 36  SNLNVSLCARYPEKRFVPDGNRIS-WDSKKGF---TIPSYMISYAGMVFCEAKINDESYQ 91

Query: 392 AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD 451
           +   + V              P   +         L  T        I +          
Sbjct: 92  SIMYIVVVVGYRI--YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF---------- 139

Query: 452 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG 511
                E+             ++         +   T++        S L I  +TR   G
Sbjct: 140 ---NWEYP------------SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 184

Query: 512 DVTCRAENVAGSVTCTATLS 531
             TC A +   +   +  + 
Sbjct: 185 LYTCAASSGLMTKKNSTFVR 204

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 66.5 bits (162), Expect = 5e-13
 Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 31/186 (16%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLE 65
           P+           + +    TC         +  W  +G+             E+ S+L 
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE----------ETNSSLN 54

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
           I+N   ED G Y C+          S  + +    +        +    V+ E Q    L
Sbjct: 55  IVNAKFEDSGEYKCQHQQ----VNESEPVYLEVFSD----WLLLQASAEVVMEGQP-LFL 105

Query: 126 K-ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN 184
           +           + +Y+        +G  +++        +SI+ AT +D   Y      
Sbjct: 106 RCHGWRNWDVYKVIYYK--------DGEALKYWYENHN--ISITNATVEDSGTYYCTGKV 155

Query: 185 TFGRAE 190
                E
Sbjct: 156 WQLDYE 161

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 36/200 (18%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKL 266
           V + P +        + K   VTL             KWF NG      +       + L
Sbjct: 1   VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------SSL 53

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
            I     + +G+Y+ +          S  V + V     ++          AS +  +  
Sbjct: 54  NIVNAKFEDSGEYKCQHQQVNE----SEPVYLEVFSDWLLL---------QASAEVVMEG 100

Query: 327 EPVVVT-----GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
           +P+ +            V +  DG  +K       Y   +    ++I+    E++G Y C
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEALK-------YWYENH--NISITNATVEDSGTYYC 151

Query: 382 TAVNPVGEAV-AAATLAVEE 400
           T      +       + V +
Sbjct: 152 TGKVWQLDYESEPLNITVIK 171

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 29/218 (13%), Positives = 54/218 (24%), Gaps = 73/218 (33%)

Query: 331 VTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
                      W H+G+  +E               L I     E++G Y C        
Sbjct: 28  GNNFFEVSSTKWFHNGSLSEETNS-----------SLNIVNAKFEDSGEYKCQHQQ--VN 74

Query: 390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK-ATVTGRPTPSICWYRGKEEI 448
                 L V             +    V+ E Q    L+           + +Y+     
Sbjct: 75  ESEPVYLEVFSD------WLLLQASAEVVMEGQP-LFLRCHGWRNWDVYKVIYYK----- 122

Query: 449 LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD 508
              +G  +++        +SI+ AT +D   Y                            
Sbjct: 123 ---DGEALKYWYENHN--ISITNATVEDSGTY---------------------------- 149

Query: 509 QIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPR 546
                 C  +        +  L++        V+++PR
Sbjct: 150 -----YCTGKVWQLDYE-SEPLNI-------TVIKAPR 174

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 70.2 bits (171), Expect = 9e-13
 Identities = 43/285 (15%), Positives = 68/285 (23%), Gaps = 32/285 (11%)

Query: 27  TCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN-IG 85
             KV   PL    W   G                 + L I         V     T+   
Sbjct: 97  YVKVNNGPLGNPIWNISGDPTRTWNR---------AELAISTFWPNFYQVIFEVITSGHQ 147

Query: 86  GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE 145
           G        + +        P F +  + V   A   AT + +  GR       +    +
Sbjct: 148 GYLAIDE--VKVLGHPCTRTPHFLRI-QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGID 204

Query: 146 I-LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID 204
           +           +        ++   T +D   Y        G        ++       
Sbjct: 205 VRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV------- 257

Query: 205 KPRVLEAPTIVRPLQALLVPKDS-TVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKD-N 262
              V E P  + P Q   V      + L A       P V              + +  +
Sbjct: 258 ---VKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVD 314

Query: 263 VTKLVIKQTTKKTTGKYEIRVV----NEAGEARTSGSVTITVAEA 303
            T   I      T   YEI V+     E G      ++      A
Sbjct: 315 STSYKIGHLDPDTE--YEISVLLTRPGEGGTGSPGPALRTRTKCA 357

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 54.8 bits (131), Expect = 5e-08
 Identities = 52/311 (16%), Positives = 95/311 (30%), Gaps = 35/311 (11%)

Query: 9   FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTW---QKDGTELHATEHYLITTVESVSTLE 65
              +IQ V  +  Q A F C   G  +          D  +    E  + ++   +++  
Sbjct: 167 HFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFN 226

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
           ++N TK D G Y C     GGV   +   +V++     E P    P+ P    +     L
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK-----EPP---VPIAPPQLASVGATYL 278

Query: 126 KATVTGRPT---PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA 182
              +          I     +      + +  +   +T      I    P  E   SV  
Sbjct: 279 WIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDST---SYKIGHLDPDTEYEISVLL 335

Query: 183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL----QALLV-----PKDSTVTLEA 233
                         LR  T    P  +  P  +  +    + + +       + T     
Sbjct: 336 TRPGEGGTGSPGPALRTRTKCADP--MRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSY 393

Query: 234 EYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV--VNEAGEAR 291
             T     +V   +  +E VS D E   +  +  I   +  T     +++  +N  G   
Sbjct: 394 NLTVHYCYQVGGQEQVREEVSWDTEN--SHPQHTITNLSPYTN--VSVKLILMNPEGRKE 449

Query: 292 TSGSVTITVAE 302
            S  + +   E
Sbjct: 450 -SQELIVQTDE 459

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 51.3 bits (122), Expect = 7e-07
 Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 22/189 (11%)

Query: 228 TVTLEAEYTGTPTPEVKWFKNGKEI-----VSKDIETKD-NVTKLVIKQTTKKTTGKYEI 281
            + +  +    P     W  +G            I T   N  +++ +  T    G   I
Sbjct: 93  LLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAI 152

Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
             V   G   T     +        + +V V +   A+FQ           G+       
Sbjct: 153 DEVKVLGHPCTRTPHFLR-------IQNVEVNAGQFATFQCS-------AIGRTVAGDRL 198

Query: 342 S--HDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
                       KE+ +      +    +      +AG Y C      G  ++     V 
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258

Query: 400 EKEESGEAP 408
           ++     AP
Sbjct: 259 KEPPVPIAP 267

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 27/208 (12%), Positives = 48/208 (23%), Gaps = 46/208 (22%)

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
           V V   P     W+  G P +                LAIS  +P    +      +   
Sbjct: 98  VKVNNGPLGNPIWNISGDPTRTWNRAE----------LAISTFWPNFYQVIFEVITSGHQ 147

Query: 389 EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI 448
             +A   + V     +   P F +  + V   A   AT + +  GR       +    ++
Sbjct: 148 GYLAIDEVKVLGHPCT-RTPHFLRI-QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDV 205

Query: 449 -LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITR 507
                      +        ++   T +D   Y                           
Sbjct: 206 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY--------------------------- 238

Query: 508 DQIGDVTCRAENVAGSVTCTATLSLLPE 535
                  C      G         ++ E
Sbjct: 239 ------RCMIRTEGGVGISNYAELVVKE 260

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 34/241 (14%), Positives = 52/241 (21%), Gaps = 47/241 (19%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTM-----TWQKDGTELHATEHYLITT 57
            V  P+        V          CK        +      W+ +   +    H     
Sbjct: 3   TVTVPK-----DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDL 57

Query: 58  VESVS------------------TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
               S                   L+I +   +D GVY C  +  GG       + V   
Sbjct: 58  KVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAP 116

Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
                          V+    S   L     G P   + W     ++L     T      
Sbjct: 117 ------YNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKRE 170

Query: 160 TG-ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL 218
                V S          ++              A LV           + E P    P 
Sbjct: 171 EKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELV-----------IPELPLAHPPN 219

Query: 219 Q 219
           +
Sbjct: 220 E 220

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 28/241 (11%), Positives = 61/241 (25%), Gaps = 46/241 (19%)

Query: 297 TITVAEAETVMMDVRVESHPTAS-----FQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
              V     + ++ +               W +  + ++        +      +  ++ 
Sbjct: 10  LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLK--VQHSSYRQR 67

Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFT 411
             +   Q + G   L I++V  ++AG+Y C  ++  G      T+ V             
Sbjct: 68  ARLLKDQLSLGNAALQITDVKLQDAGVYRC-MISYGGADYKRITVKVNAP------YNKI 120

Query: 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
                V+    S   L     G P   + W     ++L     T                
Sbjct: 121 NQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEK-------- 172

Query: 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
                  +++V ++                   I         C    +      TA L 
Sbjct: 173 -------LFNVTSTLR-----------------INTTTNEIFYCTFRRLDPEENHTAELV 208

Query: 532 L 532
           +
Sbjct: 209 I 209

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 36/219 (16%), Positives = 61/219 (27%), Gaps = 45/219 (20%)

Query: 111 PLKPVIAEAQSPATLKATVTGRPTPS-----ICWYRGKEEIL------PDNGHTME---- 155
           P    + E  S  T++               + W    + I+       D          
Sbjct: 7   PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66

Query: 156 ------FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVL 209
                    + G   L I++   QD  VY    ++  G    R  +           +V 
Sbjct: 67  RARLLKDQLSLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITV-----------KVN 114

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKD-------- 261
                +     ++ P  S   L  +  G P  EV W  +  +++S    T +        
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174

Query: 262 NVT-KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
           NVT  L I  TT      +         E   +  + I 
Sbjct: 175 NVTSTLRINTTTN---EIFYCTFRRLDPEENHTAELVIP 210

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 65.3 bits (159), Expect = 3e-12
 Identities = 25/187 (13%), Positives = 52/187 (27%), Gaps = 33/187 (17%)

Query: 6   APRFIEKIQPVVS--HQEQPALFTCKVEGHPLPTMT-WQKDGTELHATEHYLITTVESVS 62
            P+ +  ++P      ++      C+    P    T W  + + +              S
Sbjct: 5   LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS----------SQAS 54

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
           +  I   T +D G Y C+        +    L V             +  + V  E    
Sbjct: 55  SYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVH------IGWLLLQAPRWVFKEEDP- 105

Query: 123 ATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
             L+           + + +        NG   ++     +    I +AT +D   Y  +
Sbjct: 106 IHLRCHSWKNTALHKVTYLQ--------NGKGRKYFHHNSD--FYIPKATLKDSGSYFCR 155

Query: 182 AVNTFGR 188
            +     
Sbjct: 156 GLVGSKN 162

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 47/210 (22%)

Query: 223 VPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEI 281
           V +  +VTL+ +   +P  +  +WF N   I S+        +   I   T   +G+Y  
Sbjct: 19  VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------SSYFIDAATVDDSGEYRC 71

Query: 282 RVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-----GKPT 336
           +       +  S  V + V     +           A    F   +P+ +          
Sbjct: 72  QTQL----STLSDPVQLEVHIGWLL---------LQAPRWVFKEEDPIHLRCHSWKNTAL 118

Query: 337 PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAAT 395
             VT+  +G   K       Y   +      I +   +++G Y C  +            
Sbjct: 119 HKVTYLQNGKGRK-------YFHHNS--DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQ 169

Query: 396 LAVEEKEESGEAPKFTKPLKPVIAEAQSPA 425
           + + +                 I+    P 
Sbjct: 170 ITITQ-----------GLAVSTISSFFPPG 188

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 21/123 (17%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESV 61
           EV     + +    V  +E P    C       L  +T+ ++G                 
Sbjct: 85  EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK--------YFHHN 136

Query: 62  STLEIINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
           S   I   T +D G Y C+       V++ +  + + +                 I+   
Sbjct: 137 SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ-----------GLAVSTISSFF 185

Query: 121 SPA 123
            P 
Sbjct: 186 PPG 188

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLE 65
           P  +E    +   +   A   C+     L +++W   +GT +    + +   V S  TL 
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
             N T +D G+YTC  +N  G  T SA L V  
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 20/107 (18%)

Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
                 + V E     +  R  +    S  W   +  V+  G     +    DGT     
Sbjct: 345 VEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT----- 398

Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
                         L  + V  ++ G+Y+C   N VG   A+ATL V
Sbjct: 399 --------------LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK-NGKEIVSKDIETKDNVTK--- 265
            AP IV P   L V +     L+     T    V W   NG  +     + +  V     
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           L     T + TG Y   V N  G   T+ S T+ V
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGN--TTASATLNV 431

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD-GTELHATEHYLITTVESVSTL 64
           AP  ++  + +   + + A   C+    P+ ++ W    GT L     +   +V +  TL
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
              +    D GVYTC  TN+ G +  SA L V
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 21/107 (19%)

Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
                 + ++E     +  R    P +S +W + +  V+      P ++  +DGT     
Sbjct: 356 MDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT----- 408

Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
                         L  S V   + G+Y+C   N  G + A+A L V
Sbjct: 409 --------------LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK-NGKEIVSKDIETKDNVTK--- 265
            AP I+   + L + +     L+      P   VKW   NG  +       + +V     
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           L         TG Y   V N AG   ++ S  + V
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGN--SNASAYLNV 441

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 60.5 bits (146), Expect = 1e-11
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 11/105 (10%)

Query: 3   EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMT--WQKDGTELHATEHYLITTVES 60
           +   P+   + +   +       FTC         MT  W  D   L   E      + +
Sbjct: 7   DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66

Query: 61  --------VSTLEIINPTKEDIGVYTCKATNIGGVATCS-ANLIV 96
                    + L + N      G Y C  +N  G +    A L +
Sbjct: 67  QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 14/106 (13%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETKDNVTK 265
               P I    +       S V+       +    +   W  + + +   ++E   ++  
Sbjct: 7   DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66

Query: 266 -----------LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
                      L ++     + G Y+  + N  G +  S    +T+
Sbjct: 67  QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS-YSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 8/95 (8%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGEC 163
           P+ T   +   A   S  +   +         +  W    E +              G  
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 164 V------LSISEATPQDEAVYSVKAVNTFGRAECR 192
           +      L +       E  Y     N FG +   
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 15/105 (14%)

Query: 297 TITVAEAETVMMDVRVESHPTA--SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV 354
           T +      V       S   +  +F W   +E +             +      +G E+
Sbjct: 19  TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEAL-------QDAEMENYAHLRAQGGEL 71

Query: 355 TIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAV 398
             Y        L +  V   + G Y C   N  G + +  A L +
Sbjct: 72  MEYTTI-----LRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 15/127 (11%), Positives = 29/127 (22%), Gaps = 30/127 (23%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGEC 465
           P+ T   +   A   S  +   +         +  W    E +              G  
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
           ++  +                           ++L +  +     G   C   N  GS  
Sbjct: 71  LMEYT---------------------------TILRLRNVEFTSEGXYQCVISNHFGSSY 103

Query: 526 CT-ATLS 531
              A L+
Sbjct: 104 SVXAXLT 110

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 12/118 (10%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS---- 62
                  + +   + Q     C        ++ W            Y +           
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 63  -----TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE--KEESGEAPKFTKPLK 113
                ++ + N T +D GVY C   +   V+T    +IVL   K E    P   +PL+
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVLATMKGEFCRYPSHWRPLE 118

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 47.7 bits (113), Expect = 5e-07
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
           T+ + TITV E +T+ +         +S QW            P+    + ++   +K  
Sbjct: 5   TNHTETITVEEGQTLTLKCVTSLRKNSSLQWL----------TPSGFTIFLNEYPVLKNS 54

Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV-NPVGEAVAAATLAVEEKEESGEAPKF 410
           K   +   +     + +  V  ++ G+Y C    + V        +    K E    P  
Sbjct: 55  K-YQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSH 113

Query: 411 TKPLK 415
            +PL+
Sbjct: 114 WRPLE 118

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 13/122 (10%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP------- 158
              T   + +  E     TLK   + R   S+ W       +  N + +  N        
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRKATTIDKPRVLEAPTIVRP 217
           +  +  +++   T QDE VY      +   +     + VL       K      P+  RP
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCL-HYSDSVSTKEVKVIVLATM----KGEFCRYPSHWRP 116

Query: 218 LQ 219
           L+
Sbjct: 117 LE 118

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP------- 460
              T   + +  E     TLK   + R   S+ W       +  N + +  N        
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETK 490
           +  +  +++   T QDE VY     S    
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYSDSVS 91

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 57.9 bits (139), Expect = 1e-10
 Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 12/111 (10%)

Query: 2   AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTW---------QKDGTELHA 49
           AE     F++K   V     + A+   KV G  L   PT+ W          K G     
Sbjct: 8   AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSF 67

Query: 50  TEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKE 100
            E +   +      L I      D G Y  +        +C  N+ V    
Sbjct: 68  KESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 15/106 (14%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTP---TPEVKWFK---------NGKEI---VSKD 256
              ++   ++ V       + A+  G      P +KWFK         +G       S +
Sbjct: 13  GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72

Query: 257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
             +     +L I +      G Y + V  +        ++ +    
Sbjct: 73  SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 14/103 (13%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPM----KEGKEVTIYQDTDGLC 364
            V VE+   A     ++ + +       P + W   G  +    K G   +  +  +   
Sbjct: 21  SVSVETGKDAVVVAKVNGKELP----DKPTIKW-FKGKWLELGSKSGARFSFKESHNSAS 75

Query: 365 K-----LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE 402
                 L I +V   + G Y                + VE   
Sbjct: 76  NVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 61.0 bits (147), Expect = 2e-10
 Identities = 40/288 (13%), Positives = 72/288 (25%), Gaps = 31/288 (10%)

Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
              L TC         +       E    +  L+    +    E+ N    +     C +
Sbjct: 15  GSVLVTCSTSCDQPKLLGI-----ETPLPKKELLLPGNNRKVYELSNVQ--EDSQPMCYS 67

Query: 82  TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG---RPTPSIC 138
               G +T    L V    E            P         TL+  V G   R   ++ 
Sbjct: 68  NCPDGQSTAKTFLTVYWTPER-----VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122

Query: 139 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF---GRAECRANL 195
             RG++E+  +         T      ++        A +S +        G        
Sbjct: 123 LLRGEKELKREPAVGEPAEVT-----TTVLVRRDHHGANFSCRTELDLRPQGLELFENTS 177

Query: 196 VLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP---EVKWFKNGKEI 252
              +  T   P         R L+      D+  T+     G       +V      + +
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEV-----DTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232

Query: 253 VSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
                   D+ +       T +  G   +      G        T+T+
Sbjct: 233 NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 57.4 bits (138), Expect = 2e-10
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLIT----------TVESVSTLEIINPTK 71
           +  +  C         + +  +          L+             + +STL I   T+
Sbjct: 24  EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 83

Query: 72  EDIGVYTCKATNIGGVATCSANLIVLEK 99
            D G+YTC A++       S  + V EK
Sbjct: 84  SDQGLYTCAASSGLMTKKNSTFVRVHEK 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 49.0 bits (116), Expect = 2e-07
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 330 VVTGKPTPLV--TWSHDGTPMKEGKEVTIYQDT-------DGLCKLAISEVFPENAGLYS 380
               +    +   W +  +  +  K V     T         L  L I  V   + GLY+
Sbjct: 31  TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 90

Query: 381 CTAVNPVGEAVAAATLAVEEK 401
           C A + +     +  + V EK
Sbjct: 91  CAASSGLMTKKNSTFVRVHEK 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 14/113 (12%), Positives = 26/113 (23%), Gaps = 19/113 (16%)

Query: 110 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTME--------FNPTTG 161
            P   +         L  T        I +          +   +               
Sbjct: 13  SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI 214
              L+I   T  D+ +Y+  A +     +    +           RV E P +
Sbjct: 73  LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV-----------RVHEKPFV 114

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 15/113 (13%)

Query: 215 VRPLQALLVPKDSTVTLEAEYTGTPTPEV--KWFKNGKEIVSKDIETKDNVTK------- 265
           + P   + +     + L           +   W     +   K +  +D  T+       
Sbjct: 12  LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71

Query: 266 ----LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVES 314
               L I   T+   G Y     +     +   S  + V E   V     +ES
Sbjct: 72  FLSTLTIDGVTRSDQGLYTCAASSGLMTKKN--STFVRVHEKPFVAFGSGMES 122

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 14/120 (11%), Positives = 26/120 (21%), Gaps = 25/120 (20%)

Query: 412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE 471
            P   +         L  T        I +                              
Sbjct: 13  SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYP------------------------- 47

Query: 472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
           ++         +   T++        S L I  +TR   G  TC A +   +   +  + 
Sbjct: 48  SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 39/192 (20%), Positives = 57/192 (29%), Gaps = 37/192 (19%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS----------T 63
           Q +         F       PL  + W+K   ++   E+       S            +
Sbjct: 3   QQIYGVVYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 64  LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA 123
           L I N T  D   Y  ++ NI    T    L VLE              KP+I    S A
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEM-----------VSKPMIYWECSNA 108

Query: 124 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV 183
           TL   V       +  Y+GKE +                   ++S       A +  KAV
Sbjct: 109 TLTCEVLEGTDVELKLYQGKEHLRSLR-------------QKTMSYQWTNLRAPFKCKAV 155

Query: 184 NTFGRAECRANL 195
           N   +      +
Sbjct: 156 NRVSQESEMEVV 167

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 26/187 (13%), Positives = 47/187 (25%), Gaps = 39/187 (20%)

Query: 227 STVTLEAEYTGTPTPEVKWFKNGKEIVSKD-------------IETKDNVTKLVIKQTTK 273
             VT        P  EV W K   ++   +             +        L I   T 
Sbjct: 11  GNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS 69

Query: 274 KTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTG 333
               +YE+   N            + V E         + S P   ++    +    V  
Sbjct: 70  SDEDEYEMESPNITDTM----KFFLYVLE---------MVSKPMIYWECSNATLTCEVLE 116

Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393
                +        ++  ++ T+            S  +      + C AVN V +    
Sbjct: 117 GTDVELKLYQGKEHLRSLRQKTM------------SYQWTNLRAPFKCKAVNRVSQESEM 164

Query: 394 ATLAVEE 400
             +   E
Sbjct: 165 EVVNCPE 171

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 28/156 (17%)

Query: 333 GKPTPLVTWSHDGTPM---KEGKEVTIYQDTDGL------CKLAISEVFPENAGLYSCTA 383
             P   V W      +   +  +        + +        L I  +   +   Y   +
Sbjct: 20  NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79

Query: 384 VNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR 443
            N          L V E              KP+I    S ATL   V       +  Y+
Sbjct: 80  PNITDTMKF--FLYVLEM-----------VSKPMIYWECSNATLTCEVLEGTDVELKLYQ 126

Query: 444 GKEEILPDNGHTMEFNPTTG----ECVLS--ISEAT 473
           GKE +      TM +  T      +C     +S+ +
Sbjct: 127 GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 162

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 28/182 (15%), Positives = 50/182 (27%), Gaps = 33/182 (18%)

Query: 228 TVTLEAEYT-GTPTPEVKWFKNGKEIV--------SKDIETKDNVTK----------LVI 268
           +VTL  E+  G     + W  N   +         S +I   +              L +
Sbjct: 15  SVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74

Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEP 328
                + TG Y  ++  +     +S ++ I         + V   S    +    +H   
Sbjct: 75  SNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN---IQVTNHSQLFQNMTCELHLTC 131

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
            V          W   G  +     +T+  D               +   Y+C A N V 
Sbjct: 132 SVEDADDNVSFRWEALGNTLSSQPNLTVSWDPR-----------ISSEQDYTCIAENAVS 180

Query: 389 EA 390
             
Sbjct: 181 NL 182

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 28/192 (14%), Positives = 51/192 (26%), Gaps = 35/192 (18%)

Query: 22  QPALFTCKV-EGHPLPTMTWQKDGTEL---------------HATEHYLITTVESVSTLE 65
           +      +   G  +  +TW  + T L                  +           +L+
Sbjct: 14  ESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQ 73

Query: 66  IINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATL 125
           + N   ED G Y  + +        S  L +L +  +    + T     +         L
Sbjct: 74  LSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN---IQVTNHS-QLFQNMTCELHL 129

Query: 126 KATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP-QDEAVYSVKAV 183
             +V       S  W           G+T+   P      L++S       E  Y+  A 
Sbjct: 130 TCSVEDADDNVSFRWEA--------LGNTLSSQPN-----LTVSWDPRISSEQDYTCIAE 176

Query: 184 NTFGRAECRANL 195
           N         + 
Sbjct: 177 NAVSNLSFSVSA 188

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 10/97 (10%)

Query: 1   MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES 60
           + ++   +     Q   +   +  L     +     +  W+  G  L +  +  +     
Sbjct: 105 LRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTV----- 159

Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
                  +P       YTC A N     + S +   L
Sbjct: 160 -----SWDPRISSEQDYTCIAENAVSNLSFSVSAQKL 191

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 27/166 (16%)

Query: 32  GHPLPTMTWQKDGTELHATEHYL--ITTVESVSTLEIINPTKEDIGVYTCKATNIGGVAT 89
                 + +  +G +      +   +   ++   L I N +KED G Y  +  +      
Sbjct: 37  TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED-Q 95

Query: 90  CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD 149
               + V E              KP+I    S ATL   V       +  Y+GKE +   
Sbjct: 96  WKITMEVYEM-----------VSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL 144

Query: 150 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
                           ++S       A +  KAVN   +      +
Sbjct: 145 RQ-------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 177

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 30/246 (12%), Positives = 55/246 (22%), Gaps = 74/246 (30%)

Query: 291 RTSGSVTITVAEAETVMMDVRV-ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK 349
           +      +       V + +            W               ++ +  +G    
Sbjct: 2   QDQSVPNVNAITGSNVTLTILKHPLASYQRLTWL--------HTTNQKILEYFPNGKKTV 53

Query: 350 EGKE----VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESG 405
                   V + +       L I  V  E+ G Y    ++   E     T+ V E     
Sbjct: 54  FESVFKDRVDLDKTN---GALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEM---- 105

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
                    KP+I    S ATL   V       +  Y+GKE +                 
Sbjct: 106 -------VSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL----------------- 141

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
                                         +     +S    +      C+A N     +
Sbjct: 142 -----------------------------RSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 172

Query: 526 CTATLS 531
               ++
Sbjct: 173 EMEVVN 178

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 18/169 (10%), Positives = 54/169 (31%), Gaps = 29/169 (17%)

Query: 131 GRPTPSICWYRGKEEILPDNGHT--MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
                 + ++   ++ + ++     ++ + T G   L I   + +D   Y ++ ++    
Sbjct: 37  TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLHE-TE 93

Query: 189 AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKN 248
            + +  +       + +   +  P I          + S  TL  E       E+K ++ 
Sbjct: 94  DQWKITM------EVYEM--VSKPMIYW--------ECSNATLTCEVLEGTDVELKLYQG 137

Query: 249 GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT 297
            + + S        + +  +          ++ + VN   +      V 
Sbjct: 138 KEHLRS--------LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 178

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 11/70 (15%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKED 73
           +P++  +   A  TC+V       +   +    L            S+    +       
Sbjct: 108 KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR-----------SLRQKTMSYQWTNL 156

Query: 74  IGVYTCKATN 83
              + CKA N
Sbjct: 157 RAPFKCKAVN 166

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 23/179 (12%), Positives = 44/179 (24%), Gaps = 41/179 (22%)

Query: 26  FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG 85
            TC ++      + W+K+G EL       +  ++  S +E       D G Y C      
Sbjct: 19  LTCPLD--SDENLKWEKNGQELPQKHDKHLV-LQDFSEVE-------DSGYYVCYTPASN 68

Query: 86  GVATCSANLIVLEKEESG-------------------EAPKFTKPLKPVIAEAQSPATLK 126
                     V   +++                    +  K    ++   +       L 
Sbjct: 69  KNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLT 128

Query: 127 ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT 185
               G    +I W +    I P N               ++          Y  +    
Sbjct: 129 ---CGLTDKTIKWLKDGSIISPLNATKN---------TWNLGNNAKDPRGTYQCQGAKE 175

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 19/178 (10%), Positives = 42/178 (23%), Gaps = 40/178 (22%)

Query: 334 KPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA 393
                + W  +G  + +  +  +            SEV  E++G Y C            
Sbjct: 24  DSDENLKWEKNGQELPQKHDKHLVLQD-------FSEV--EDSGYYVCYTPASNKNTYLY 74

Query: 394 ATLAVEEKEESG-------------------EAPKFTKPLKPVIAEAQSPATLKATVTGR 434
               V   +++                    +  K    ++   +       L     G 
Sbjct: 75  LKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLT---CGL 131

Query: 435 PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM 492
              +I W +    I P N               ++          Y  + +   +  +
Sbjct: 132 TDKTIKWLKDGSIISPLNATKN---------TWNLGNNAKDPRGTYQCQGAKETSNPL 180

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 23/164 (14%), Positives = 42/164 (25%), Gaps = 17/164 (10%)

Query: 133 PTPSICWYRGKEEILPDNGHTMEFNPTTG-------ECVLSISEATPQDEAVYSVKAVNT 185
              ++ W +  +E+   +   +     +         C    S        +Y    V +
Sbjct: 25  SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKN---TYLYLKARVGS 81

Query: 186 FGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKW 245
              A+  A           K    +       +Q      D +V L     G     +KW
Sbjct: 82  ADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLT---CGLTDKTIKW 138

Query: 246 FKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE 289
            K+G  I               +    K   G Y+ +   E   
Sbjct: 139 LKDGSIISP----LNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 21/170 (12%), Positives = 42/170 (24%), Gaps = 31/170 (18%)

Query: 239 PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTK-KTTGKYEIRVVNEAGE------AR 291
               +KW KNG+E+         +   LV++  ++ + +G Y                AR
Sbjct: 25  SDENLKWEKNGQELPQ------KHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR 78

Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT----------GKPTPLVTW 341
              +       A+             +      +   V  +          G     + W
Sbjct: 79  VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKW 138

Query: 342 SHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV 391
             DG+ +                   +     +  G Y C         +
Sbjct: 139 LKDGSIISPLNATKN--------TWNLGNNAKDPRGTYQCQGAKETSNPL 180

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 49.9 bits (119), Expect = 7e-08
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 2   AEVLAPRFIEKI-QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES 60
           ++V   +    + Q V   +   A+ TC+V+ +   ++ W     +    +         
Sbjct: 1   SKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNR 60

Query: 61  VS---------TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
           +          ++ + + +  D G YTC       V T  A L VL 
Sbjct: 61  IELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLG 106

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 102 SGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP-- 158
             +  +   PL + V       A L   V      S+ W    ++ L  +      +   
Sbjct: 2   KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61

Query: 159 -----TTGECVLSISEATPQDEAVY 178
                +  E  +S+S+ +  DE  Y
Sbjct: 62  ELVRASWHELSISVSDVSLSDEGQY 86

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 404 SGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP-- 460
             +  +   PL + V       A L   V      S+ W    ++ L  +      +   
Sbjct: 2   KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61

Query: 461 -----TTGECVLSISEATPQDEAVY 480
                +  E  +S+S+ +  DE  Y
Sbjct: 62  ELVRASWHELSISVSDVSLSDEGQY 86

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 27/210 (12%), Positives = 56/210 (26%), Gaps = 17/210 (8%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLE-------AEYTGTPTPEVKWFKNGKEIVSKDIETK 260
           +L+    + P ++ +V   S  T          +Y       + W  N   I  +     
Sbjct: 1   LLDPCGYISP-ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII 59

Query: 261 DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF 320
           +     V          +    ++      +    +TI          ++    +     
Sbjct: 60  NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKM 119

Query: 321 --QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
             +W    +    T   T     S   T   +  +    +DT   C +  S V+  N   
Sbjct: 120 RCEW----DGGRETHLETNFTLKSEWAT--HKFADCKAKRDTPTSCTVDYSTVYFVN-IE 172

Query: 379 YSCTAVNPVGEAVAAATLAVEEKEESGEAP 408
               A N +G+  +         +     P
Sbjct: 173 VWVEAENALGKVTSDHINFDPVYKVKPNPP 202

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 38/338 (11%), Positives = 82/338 (24%), Gaps = 46/338 (13%)

Query: 22  QPALFTCKVE-------GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDI 74
                 C ++             + W+ +   +   ++ +I    + S++   +    + 
Sbjct: 19  SNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN--RTASSVTFTDIASLN- 75

Query: 75  GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT---G 131
              TC     G +      + ++             P KP           K       G
Sbjct: 76  IQLTCNILTFGQLEQNVYGITIISG---------LPPEKPKNLSCIVNEGKKMRCEWDGG 126

Query: 132 RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191
           R T     +  K E         +    T                   V+A N  G+   
Sbjct: 127 RETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS 186

Query: 192 RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE 251
                        KP     P  +  +        S + L        +  +  +     
Sbjct: 187 DHINFDP--VYKVKP---NPPHNLSVIN--SEELSSILKLTWTNPSIKSVIILKYNIQYR 239

Query: 252 IVSKDIETKDNVTKLVIKQTTKKTTG-----KYEIRV--VNEAGEARTSG-SVTITVAEA 303
                  ++         +++          +Y  R+  + E G+   S  S   +    
Sbjct: 240 TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 299

Query: 304 ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTW 341
           E           P+ +  ++   +P    G  T  + W
Sbjct: 300 EDR---------PSKAPSFWYKIDPSHTQGYRTVQLVW 328

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 18/101 (17%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-------------I 257
              +V  L+ + V          + +     +  WF NG+E+ S +             I
Sbjct: 8   TARLVAGLEDVQVYDGEDAVFSLDLSTII--QGTWFLNGEELKSNEPEGQVEPGALRYRI 65

Query: 258 ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           E K    +L++     + +G     V       + S ++TI
Sbjct: 66  EQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDSAALTI 103

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 17/105 (16%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE----------HYLI 55
             R +  ++ V  +  + A+F+  +      T  W  +G EL + E           Y I
Sbjct: 8   TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRI 65

Query: 56  TTVESVSTLEIINPTKEDIGVY-TCKATNIGGVATCSANLIVLEK 99
                   L +     +D G         +      SA L + E 
Sbjct: 66  EQKGLQHRLILHAVKHQDSGALVGFSCPGV----QDSAALTIQES 106

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 50.1 bits (119), Expect = 4e-07
 Identities = 25/136 (18%), Positives = 37/136 (27%), Gaps = 9/136 (6%)

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP 122
            L I N T  D G Y C   +          L          A   +     V       
Sbjct: 84  ALRIHNVTASDSGKYLCYFQDGDFYEKALVELK--------VAALGSDLHVDVKGYKDGG 135

Query: 123 ATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
             L+   TG  P P I W   K E +P     +  +      V +            S  
Sbjct: 136 IHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCT 195

Query: 182 AVNTFGRAECRANLVL 197
             ++    E  A++ +
Sbjct: 196 IRSSLLGLEKTASISI 211

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 49.3 bits (117), Expect = 8e-07
 Identities = 40/245 (16%), Positives = 64/245 (26%), Gaps = 48/245 (19%)

Query: 297 TITVAEAETVMMDVRVESHPTASF---QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKE 353
            I     E   +   +    +A     +W   S   VV               P +    
Sbjct: 13  PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTS 72

Query: 354 VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKP 413
           +     T G   L I  V   ++G Y C   +      A   L          A   +  
Sbjct: 73  ILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELK--------VAALGSDL 124

Query: 414 LKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 472
              V         L+   TG  P P I W   K E +P                 ++   
Sbjct: 125 HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP-----------------TVEAP 167

Query: 473 TPQDEA-VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
              D   +Y+V AS                   +       V+C   +    +  TA++S
Sbjct: 168 VVADGVGLYAVAASVI-----------------MRGSSGEGVSCTIRSSLLGLEKTASIS 210

Query: 532 LLPES 536
            + + 
Sbjct: 211 -IADP 214

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 46/221 (20%)

Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTPS---ICWYRGKEE---ILPDNGHTMEFN----- 157
             P  P++A     A L   +    +     + W          +  +G  +E       
Sbjct: 8   LGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPY 67

Query: 158 ----------PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPR 207
                      T G+  L I   T  D   Y     +     +    L            
Sbjct: 68  RGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELK----------- 116

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKDIETKDN---- 262
              A         +   KD  + LE   TG  P P+++W  N  E +             
Sbjct: 117 --VAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVG 174

Query: 263 ----VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
                  ++++ ++          + +       + S++I 
Sbjct: 175 LYAVAASVIMRGSSG---EGVSCTIRSSLLGLEKTASISIA 212

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 11/98 (11%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTE--LHATEHYLITTVES 60
            +A    +    V  +++      C+  G +P P + W  +  E         +   V  
Sbjct: 116 KVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGL 175

Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
            +    +          +C   +       +A++ + +
Sbjct: 176 YAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 49.7 bits (118), Expect = 5e-07
 Identities = 21/190 (11%), Positives = 40/190 (21%), Gaps = 30/190 (15%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPTMTW--QKDGTELHATEHYLITTVESVSTLEIINPTK 71
           +     +       C                          +L   +  +          
Sbjct: 10  RVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR--------- 60

Query: 72  EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG 131
           E      C              +   ++ +            P         TL   V G
Sbjct: 61  EPETQPVCFFRCARRTLQARGLIRTFQRPDR-----VELMPLPPWQPVGENFTLSCRVPG 115

Query: 132 ---RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR 188
              R + ++   RG +E++  +               ++        A +S         
Sbjct: 116 AGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFS--------- 166

Query: 189 AECRANLVLR 198
             CRA L LR
Sbjct: 167 --CRAELDLR 174

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 49.8 bits (118), Expect = 6e-07
 Identities = 44/229 (19%), Positives = 70/229 (30%), Gaps = 25/229 (10%)

Query: 297 TITVAEAETVMMDVRVE-SHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT 355
            + V   ++V++D     +H     +WF+           +  +  S     M + +  +
Sbjct: 9   LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68

Query: 356 IYQDTDGLCKLAISEVFPENAGLYSCTA-VNPVGEAVAAATLAVEEKEESGEAPKFTKPL 414
                D   +L ++E    +   Y C       G A A A L V  K E+ E       L
Sbjct: 69  PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128

Query: 415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP 474
             +   AQ  AT  +   G P P I WYR        NG  +E            S    
Sbjct: 129 SVMEDSAQEIATCNSR-NGNPAPKITWYR--------NGQRLEVPVEMNPEGYMTSRTVR 179

Query: 475 QDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
           +   + S+               S L +     D+     C A      
Sbjct: 180 EASGLLSLT--------------STLYLRLRKDDRDASFHCAAHYSLPE 214

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 6/154 (3%)

Query: 62  STLEIINPTKEDIGVYTCKA-TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ 120
             L +      D   Y C       G A  +A L V  K E+ E       L  +   AQ
Sbjct: 77  GRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQ 136

Query: 121 SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV 180
             AT  +   G P P I WYR  + +        E   T+     +    +        +
Sbjct: 137 EIATCNSR-NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRL 195

Query: 181 KAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI 214
           +  +      C A+  L +     +   L++PT 
Sbjct: 196 RKDDRDASFHCAAHYSLPE----GRHGRLDSPTF 225

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 14/84 (16%)

Query: 16  VVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLE--------- 65
            V       + TC    G+P P +TW ++G  L            +  T+          
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188

Query: 66  ---IINPTKEDIG-VYTCKATNIG 85
               +   K+D    + C A    
Sbjct: 189 STLYLRLRKDDRDASFHCAAHYSL 212

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 32/206 (15%)

Query: 115 VIAEAQSPATL----KATVTGRPTPSICWYRGKEEILPDNGHTMEFNP---------TTG 161
           V  E +  ATL      +V       I W + K+ +L      M   P          T 
Sbjct: 4   VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63

Query: 162 ECVLSISEATPQDEAVYS---VKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL 218
              + I    P DE  Y    +K      + E  A + L        P +          
Sbjct: 64  NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI---------- 113

Query: 219 QALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKDIE-TKDNVTKLVIKQTT---- 272
               +P  +   +    +G  P P + W +NG+E+ + +   ++D  T+L    +     
Sbjct: 114 SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN 173

Query: 273 KKTTGKYEIRVVNEAGEARTSGSVTI 298
             T   +   +         + +   
Sbjct: 174 MTTNHSFMCLIKYGHLRVNQTFNWNT 199

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 27/169 (15%)

Query: 13  IQPVVSHQEQPALFTCK----VEGHPLPTMTWQKDGTELHATEHYLITTVESVS------ 62
           +  V    ++ A  +C     VE      + WQK+   +       +             
Sbjct: 1   VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60

Query: 63  -----TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIA 117
                ++ I+     D G Y C        A    +L  +                P I+
Sbjct: 61  ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLS------VKADFPTPSIS 114

Query: 118 EAQSPATLKATVT-----GRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
           + + P +    +      G P P + W    EE+   N  T+  +P T 
Sbjct: 115 DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN-TTVSQDPETE 162

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 9/86 (10%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVES-- 60
           V A      I              C   G  P P ++W ++G EL+A    +    E+  
Sbjct: 104 VKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETEL 163

Query: 61  ---VSTLEIINPTKEDIGVYTCKATN 83
               S L+           + C    
Sbjct: 164 YAVSSKLDF---NMTTNHSFMCLIKY 186

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 44/246 (17%), Positives = 70/246 (28%), Gaps = 57/246 (23%)

Query: 296 VTITVAEAETVMM----DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
           + +T    E   +    +V VE        W    + V        L   S D     E 
Sbjct: 2   IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMV--------LTMMSGDMNIWPEY 53

Query: 352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFT 411
           K  TI+  T+ L  + I  + P + G Y C  +    +A         E           
Sbjct: 54  KNRTIFDITNNLS-IVILALRPSDEGTYECVVLKYEKDAF------KREHLAEVTLSVKA 106

Query: 412 KPLKPVIAEAQSPATLKATVT-----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
               P I++ + P +    +      G P P + W    EE+   N  T+  +P T    
Sbjct: 107 DFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN-TTVSQDPETE--- 162

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
                       +Y+V               S L  +  T        C  +     V  
Sbjct: 163 ------------LYAVS--------------SKLDFNMTTN---HSFMCLIKYGHLRVNQ 193

Query: 527 TATLSL 532
           T   + 
Sbjct: 194 TFNWNT 199

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 23/160 (14%), Positives = 43/160 (26%), Gaps = 19/160 (11%)

Query: 239 PTPEVKWFKNGKEIVSKD------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
               V    +G   +  +       +  +N++ +VI        G YE  V+    +A  
Sbjct: 35  EKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS-IVILALRPSDEGTYECVVLKYEKDAFK 93

Query: 293 SGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVT-----GKPTPLVTWSHDGTP 347
                     AE  +        P+ S      S    +      G P P ++W  +G  
Sbjct: 94  REH------LAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEE 147

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENA-GLYSCTAVNP 386
           +              L  ++    F       + C     
Sbjct: 148 LNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 26/186 (13%), Positives = 40/186 (21%), Gaps = 19/186 (10%)

Query: 211 APTIVRPLQALLVPKDSTVTLE-AEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIK 269
            P        L      +VTL            V W        S          +L+++
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65

Query: 270 QTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF--QWFIHSE 327
                 +G Y             +G+V + V               P ++   +W   S 
Sbjct: 66  SVQLHDSGNYSCYRAGR-----PAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRST 120

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS-----CT 382
                   T  V                  Q +    K   S       G  S       
Sbjct: 121 ----PSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQK--FSCQLAVPEGDSSFYIVSMC 174

Query: 383 AVNPVG 388
             + VG
Sbjct: 175 VASSVG 180

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 38/283 (13%), Positives = 82/283 (28%), Gaps = 20/283 (7%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCK-VEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
            P        + S        TC  VE     T+ W         +       +     L
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-GSHPSRWAGMGR--RL 62

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
            + +    D G Y+C      G    + +L+V    E  +   F K     +     P  
Sbjct: 63  LLRSVQLHDSGNYSCYR---AGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGP-- 117

Query: 125 LKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGE--CVLSISEATPQDEAVYSVK 181
              +     T ++   R  +     D     +++  + +  C L++ E       + S+ 
Sbjct: 118 --RSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPE-GDSSFYIVSMC 174

Query: 182 AVNTFGRAECRA-NLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT 240
             ++ G    +            D P  +    + R  + L V      +  + +     
Sbjct: 175 VASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRL-R 233

Query: 241 PEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV 283
            E+++ +  +         KD     VI         ++ +++
Sbjct: 234 FELRY-RAERSKTFTTWMVKDLQHHCVIHDAWSGL--RHVVQL 273

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 31/181 (17%)

Query: 208 VLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKL 266
            L  P++   P    LVP +  VTL         P V  ++  K   S+  +       L
Sbjct: 5   PLPKPSLQALPSS--LVPLEKPVTL----RCQGPPGVDLYRLEKLSSSRYQDQ----AVL 54

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHS 326
            I    +   G+Y     N +  +  S  + +             V + P+ S       
Sbjct: 55  FIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVA---------TGVFAKPSLS----AQP 101

Query: 327 EPVVVTGKPTPLVTWSHDGTPM----KEGKEVTIYQDTDGLCK--LAISEVFPENAGLYS 380
            P V +G    L   +  G       KEG +   Y++ +   +    I  V   ++G Y 
Sbjct: 102 GPAVSSGGDVTLQCQTRYGFDQFALYKEG-DPAPYKNPERWYRASFPIITVTAAHSGTYR 160

Query: 381 C 381
           C
Sbjct: 161 C 161

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 45.9 bits (107), Expect = 3e-05
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 10/129 (7%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT--EHYLITTVESVSTL 64
            +     +         A   C  +   L  + W+     L A   ++ L+        L
Sbjct: 534 DKSKGSYRQHFFKHGGTAELKCSQK-SNLARVFWKFQNGVLKAESPKYGLMGR----KNL 588

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT 124
            I N ++ D GVY C +            ++     E    PK    + P ++  Q+  +
Sbjct: 589 LIFNLSEGDSGVYQCLSEE-RVKNKTVFQVVAKHVLEVKVVPKP--VVAPTLSVVQTEGS 645

Query: 125 LKATVTGRP 133
             AT     
Sbjct: 646 RIATKVLVA 654

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 16/98 (16%), Positives = 24/98 (24%), Gaps = 3/98 (3%)

Query: 335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA 394
               V W      +K             L    I  +   ++G+Y C +   V       
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLL---IFNLSEGDSGVYQCLSEERVKNKTVFQ 616

Query: 395 TLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT 432
            +A    E          P   V+    S    K  V 
Sbjct: 617 VVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVA 654

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 13/111 (11%)

Query: 10  IEKIQPVVSHQEQPALFTCKVEG--HPLPTMTWQKDGTEL---HATEHYLI-------TT 57
           IE    + + +    +  C +      +  + W++    L   +A   + I         
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66

Query: 58  VESVSTLEIINPTKEDIGVYTCK-ATNIGGVATCSANLIVLEKEESGEAPK 107
                 L + + T  D G Y C   T   G  T    L VLE   +    +
Sbjct: 67  PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 26/192 (13%), Positives = 51/192 (26%), Gaps = 21/192 (10%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTL-------EAEYTGTPTPEVKWFKNGKEIVSKDIETK 260
           +L+    + P ++ +V   S  T          +Y       + W  N   I  +     
Sbjct: 2   LLDPCGYISP-ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII 60

Query: 261 DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF 320
           +     V          +    ++      +    +TI          ++    +     
Sbjct: 61  NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKM 120

Query: 321 --QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL 378
             +W    E    T   T     S       +  +    +DT   C +  S V+  N   
Sbjct: 121 RCEWDGGRE----THLETNFTLKSE--WATHKFADCKAKRDTPTSCTVDYSTVYFVN--- 171

Query: 379 YS--CTAVNPVG 388
                 A N +G
Sbjct: 172 IEVWVEAENALG 183

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 26/154 (16%)

Query: 7   PRFIEKIQPVVSHQE-QPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
           P  +E  +PVV+         TC++       ++ W+   T L A +     +    S L
Sbjct: 7   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQ-----SDTGRSVL 61

Query: 65  EIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEA---QS 121
            + N +    G   C  +  G     +  L+V           +  P +  ++ A     
Sbjct: 62  TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV-----------YAFPNQLTVSPAALVPG 110

Query: 122 PATLKATVTG-----RPTPSICWYRGKEEILPDN 150
              +  T            S     G +E+    
Sbjct: 111 DPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQ 144

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 24/185 (12%)

Query: 209 LEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK--EIVSKDIETKDNVTK 265
           L  P I   P    +VPK+  VT+  +       E +    G    +       + N  K
Sbjct: 2   LPKPFIWAEPHF--MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVK 58

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH 325
             I     +  G+Y          +  S  + + V             +    +    +H
Sbjct: 59  FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVV-------------TEMYDTPTLSVH 105

Query: 326 SEPVVVTGKPTPLVTWSHDGTPM----KEGKEVTI-YQDTDGLCKLAISEVFPENAGLYS 380
             P V++G+           T M    KEG+   +         +  +  V   + G Y 
Sbjct: 106 PGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYR 165

Query: 381 CTAVN 385
           C    
Sbjct: 166 CFGSY 170

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 21/104 (20%)

Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS---------TLEIINPTKE 72
              +  C+V+ H   ++ W     +              +          ++ I N    
Sbjct: 54  GTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALA 113

Query: 73  DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI 116
           D G YTC       V T  + + VL             P KP+I
Sbjct: 114 DEGEYTCSIFT-MPVRTAKSLVTVLG-----------IPQKPII 145

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
                 +Q V          +C +E     T +W+       + E    +       L I
Sbjct: 501 KPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPN---CILFI 556

Query: 67  INPTKEDIGVYTCKAT 82
            N T +  G Y C+A 
Sbjct: 557 ENLTAQQYGHYFCEAQ 572

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 41.9 bits (97), Expect = 5e-04
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 5/67 (7%)

Query: 335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV-NPVGEAVAA 393
                +W H     +  +      +    C L I  +  +  G Y C A           
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSPN----CILFIENLTAQQYGHYFCEAQEGSYFREAQH 582

Query: 394 ATLAVEE 400
             L  E+
Sbjct: 583 WQLLPED 589

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 24/191 (12%), Positives = 50/191 (26%), Gaps = 33/191 (17%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPTMTW---QKDGTELHATEHYLITTVESVSTLEIINPT 70
           + +    +      C       P +       +   L     +    V ++S        
Sbjct: 10  KKLAVEPKGSLEVNCSTTC-NQPEVGGLETSLNKILLDEQAQWKHYLVSNIS-------- 60

Query: 71  KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT 130
                V  C  T  G   + ++N+ V +             L+P +       T++  V 
Sbjct: 61  --HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILT-----LQPTLVAVGKSFTIECRVP 113

Query: 131 G---RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG 187
                 + ++  +RG E +  +        P       + +         +S        
Sbjct: 114 TVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFS-------- 165

Query: 188 RAECRANLVLR 198
              C A L L 
Sbjct: 166 ---CLAVLDLM 173

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 21/169 (12%)

Query: 222 LVPKDSTVTLEAEYTGTPTPEVKWFKNGK--EIVSKDIETKDNVTKLVIKQTTKKTTGKY 279
           +VPK+  VT+  +       E +    G    +       + N  K  I     +  G+Y
Sbjct: 17  MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY 75

Query: 280 EIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLV 339
                     +  S  + + V             +    +    +H  P V++G+     
Sbjct: 76  SCIYRVGELWSEPSNLLDLVV-------------TEMYDTPTLSVHPGPEVISGEKVTFY 122

Query: 340 TWSHDGTPM----KEGKEVTI-YQDTDGLCKLAISEVFPENAGLYSCTA 383
                 T M    KEG+   +         +  +  V   + G Y C  
Sbjct: 123 CRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFG 171

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 29/187 (15%)

Query: 208 VLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK- 265
            L  PT+   P    ++   ++VT+  + T     E +  K             +   K 
Sbjct: 2   PLPKPTLWAEPGS--VISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKA 58

Query: 266 -LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFI 324
              I   T+   G+Y     +  G ++ S  + + +             +   +      
Sbjct: 59  RFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVM-------------TGAYSKPTLSA 105

Query: 325 HSEPVVVTGKPTPLVTWSHDGTPM----KEGKEVTI----YQDTDGLCK--LAISEVFPE 374
              P+V +GK   L+  S          KE     +     +      +    +S V   
Sbjct: 106 LPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSV 165

Query: 375 NAGLYSC 381
           + G Y C
Sbjct: 166 HGGTYRC 172

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 30/190 (15%)

Query: 208 VLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGK--EIVSKDIETKDNVT 264
            L   T+   P    ++ + ++VT+  + T     E +  K G      +++     N  
Sbjct: 2   NLSKATLWAEPGS--VISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKA 58

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFI 324
           +  I   T+   G+Y     + AG +  S  + + V              +   +     
Sbjct: 59  RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGF-----------YNKPTLS--A 105

Query: 325 HSEPVVVTGKPTPLVTWSHDGTPM----KEGKEVTIY-------QDTDGLCKLAISEVFP 373
              PVV +G+   L   S          +EG     +                 +  V P
Sbjct: 106 LPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTP 165

Query: 374 ENAGLYSCTA 383
            +  +  C  
Sbjct: 166 SHRWMLRCYG 175

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 11/99 (11%)

Query: 3   EVLAPRFIEKIQPVVSHQE-QPALFTCKV----EGHPLPTMTWQKDGTELHATEHYLITT 57
           EV A      I  +   +  +P   +C +    E  P  T +W  +              
Sbjct: 119 EVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP------E 172

Query: 58  VESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
               S L +    ++     TC+    G   T    + +
Sbjct: 173 TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 40/258 (15%), Positives = 68/258 (26%), Gaps = 25/258 (9%)

Query: 18  SHQEQPALFTCKVEGH-PLP-TMTWQKDGTELHATEHYLITTVES-----VSTLEIINPT 70
            H        C V G+ P    +TW +DG  +        TT E       S L +    
Sbjct: 21  GHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKH 80

Query: 71  KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT 130
                 YTC+ T   G     +     +    G +   ++P    +   +S  T+   V 
Sbjct: 81  WLSDRTYTCQVTY-QGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKS-PTITCLVV 138

Query: 131 G----RPTPSICWYRGKEEILPDNGHTME--FNPTTG-ECVLSISEATPQDEAVYSVKAV 183
                + T  + W R   + +  +    E   N T      L +      +   Y  +  
Sbjct: 139 DLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVT 198

Query: 184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG--TPTP 241
           +         +           P V          +          TL            
Sbjct: 199 HPHLPRALMRSTTKTSGPRA-APEV----YAFATPEWPG--SRDKRTLACLIQNFMPEDI 251

Query: 242 EVKWFKNGKEIVSKDIET 259
            V+W  N  ++      T
Sbjct: 252 SVQWLHNEVQLPDARHST 269

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 38.2 bits (88), Expect = 9e-04
 Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 4/62 (6%)

Query: 26 FTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK-EDIGVYTCKATNI 84
           TC     P   + WQ +   +   E       +    L +   ++ E  G Y C     
Sbjct: 26 LTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDE-DHLSLKEFSELEQSGYYVCYPRGS 82

Query: 85 GG 86
            
Sbjct: 83 KP 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	579
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	100.0
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	100.0
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	100.0
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	100.0
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	100.0
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	100.0
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	100.0
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	100.0
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.98
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.98
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.98
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.98
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.97
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.97
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.97
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.97
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.97
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.96
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.96
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.96
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.96
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.95
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.95
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.95
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.95
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.94
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.94
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.94
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.94
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.93
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.93
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.93
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.93
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.93
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.93
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.93
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.93
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.93
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.92
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.92
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.92
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.92
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.92
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.92
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.92
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.92
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.91
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.91
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.91
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.91
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.91
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.91
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.91
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.91
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.9
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.9
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.9
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.9
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.9
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.9
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.9
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.89
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.89
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.89
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.88
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.88
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.88
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.88
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.88
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.88
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.88
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.88
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.88
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.88
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.87
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.87
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.87
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.87
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.87
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.87
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.87
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.87
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.86
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.86
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.86
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.86
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.86
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.86
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.86
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.86
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.86
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.86
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.86
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.85
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.85
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.85
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.85
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.85
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.85
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.85
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.85
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.85
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.85
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.85
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.84
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.84
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.84
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.84
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.84
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.84
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.84
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.84
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.84
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.84
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.84
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.84
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.84
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.84
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.84
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.84
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.84
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.83
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.83
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.83
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.83
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.83
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.83
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.83
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.83
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.83
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.83
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.83
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.83
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.83
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.83
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.83
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.82
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.82
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.82
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.82
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.82
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.82
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.82
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.82
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.82
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.82
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.82
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.82
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.82
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.82
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.82
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.81
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.81
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.81
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.81
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.81
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.81
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.81
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.81
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.81
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.81
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.81
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.81
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.81
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.8
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.8
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.8
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.8
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.8
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.8
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.79
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.79
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.79
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.79
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.79
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.79
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.79
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.79
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.79
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.79
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.79
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.78
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.78
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.78
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.78
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.78
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.78
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.78
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.78
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.78
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.78
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.78
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.78
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.77
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.77
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.77
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.77
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.77
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.77
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.77
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.77
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.77
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.77
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.77
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.77
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.77
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.76
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.76
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.76
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.76
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.76
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.76
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.76
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.76
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.76
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.76
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.76
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.76
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.76
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.76
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.76
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.76
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.76
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.75
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.75
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.75
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.75
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.75
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.75
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.75
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.75
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.74
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.74
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.74
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.74
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.74
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.74
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.74
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.73
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.73
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.73
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.73
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.73
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.73
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.73
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.73
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.73
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.72
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.72
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.72
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.72
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.72
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.72
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.72
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.72
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.72
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.71
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.71
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.71
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.71
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.71
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.71
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.71
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.71
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.71
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.7
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.7
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.7
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.7
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.7
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.69
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.69
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.69
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.69
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.69
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.69
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.69
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.69
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.69
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.69
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.68
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.68
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.68
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.68
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.68
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.68
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.68
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.67
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.67
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.67
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.67
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.67
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.67
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.67
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.67
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.66
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.66
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.66
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.66
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.66
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.65
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.65
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.65
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.65
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.65
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.65
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.65
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.65
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.65
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.65
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.65
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.64
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.64
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.64
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.64
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.64
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.64
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.64
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.64
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.64
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.63
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.63
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.63
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.63
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.63
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.63
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.63
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.63
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.62
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.62
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.62
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.62
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.62
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.62
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.62
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.62
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.62
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.62
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.61
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.61
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.61
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.61
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.61
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.61
1he7_A	126	High affinity nerve growth factor receptor; transf	99.6
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.6
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.6
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.6
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.59
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.59
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.59
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.59
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.59
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.59
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.59
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.59
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.59
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.59
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.59
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.58
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.58
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.58
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.58
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.58
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.58
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.57
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.57
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.57
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.57
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.57
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.57
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.57
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.57
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.56
1he7_A	126	High affinity nerve growth factor receptor; transf	99.56
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.56
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.55
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.55
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.55
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.55
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.55
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.55
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.55
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.55
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.55
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.55
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.55
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.54
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.54
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.54
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.54
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.54
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.53
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.53
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.53
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.53
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.53
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.52
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.51
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.51
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.5
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.5
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.5
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.49
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.49
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.49
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.49
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.48
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.48
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.48
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.48
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.47
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.47
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.47
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.47
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.46
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.46
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.46
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.46
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.46
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.46
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.46

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2e-68  Score=545.09  Aligned_cols=506  Identities=24%  Similarity=0.403  Sum_probs=419.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      .-||.|+.++.++.+.+|+.++|.|.+.|.|.+.|+|||+|..+....++.+.......+|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (570)
T 3b43_A            3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN   82 (570)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEe
Confidence            45899999999999999999999999999999999999999999888888777777789999999999999999999999


Q ss_pred             CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852         84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC  163 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  163 (579)
                      ..|.......+.|...   ..+|.+........+.+|+.+.|.|.+.|.|++.|.||+++..+...........  ....
T Consensus        83 ~~g~~~~~~~l~v~~~---~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~--~~~~  157 (570)
T 3b43_A           83 SVGAVASSAVLVIKER---KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFI--HNVA  157 (570)
T ss_dssp             TTEEEEEEEEEEECCC---CCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEE--TTEE
T ss_pred             CCceEEEEEEEEECCC---CCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEE--CCEE
Confidence            9998887777777543   2356677677778888999999999999999999999999998876655443322  3457


Q ss_pred             EEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeE
Q psy16852        164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEV  243 (579)
Q Consensus       164 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  243 (579)
                      .|.|.++..+|+|.|+|.|.|..|....+..+.+..        ...+|.+...+....+.+|+.+.|.|.+.|.|.+.+
T Consensus       158 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~--------~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i  229 (570)
T 3b43_A          158 TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE--------HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKI  229 (570)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--------CCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEE
T ss_pred             EEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcC--------CCCCCccccCCceeEecCCCeEEEEEEEEECCCCEE
Confidence            899999999999999999999999887777777652        124666766666777889999999999999999999


Q ss_pred             EEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCce
Q psy16852        244 KWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF  320 (579)
Q Consensus       244 ~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~  320 (579)
                      .|++++..+....   .........|.|.++..+|+|.|+|.|.|..|....+..+.|..  .+.+.....   ......
T Consensus       230 ~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~--~p~~~~~~~---~~~~v~  304 (570)
T 3b43_A          230 TWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE--PPRFIKKLE---PSRIVK  304 (570)
T ss_dssp             EEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBC--CCEEEECCC---SBCCEE
T ss_pred             EEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeec--CCcccccCC---CccEEc
Confidence            9999999987554   23345668899999999999999999999999877666665543  222221100   001112


Q ss_pred             eeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEe
Q psy16852        321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE  400 (579)
Q Consensus       321 ~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  400 (579)
                      ......+.|.+.|.|.+.+.|++++..+.....+.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       305 ~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  383 (570)
T 3b43_A          305 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV-ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE  383 (570)
T ss_dssp             SSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEE-TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEEC
T ss_pred             CCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEE-CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecC
Confidence            223344579999999999999999999988776655432 3445899999999999999999999999999999999986


Q ss_pred             cccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeE
Q psy16852        401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY  480 (579)
Q Consensus       401 ~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  480 (579)
                            +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+..                      
T Consensus       384 ------~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~----------------------  435 (570)
T 3b43_A          384 ------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS----------------------  435 (570)
T ss_dssp             ------CCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEE----------------------
T ss_pred             ------CCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEE----------------------
Confidence                  7888877778888999999999999999999999999999987766555432                      


Q ss_pred             EEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCC
Q psy16852        481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQ  560 (579)
Q Consensus       481 ~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~  560 (579)
                                   ++..+.|.|.++..+|+|.|+|.|.|..|.....+.|.|         ..||++...+.+..+..|+
T Consensus       436 -------------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v---------~~~P~~~~~~~~~~~~~g~  493 (570)
T 3b43_A          436 -------------ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITL---------KAPPRFVKKLSDISTVVGE  493 (570)
T ss_dssp             -------------ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE---------CCCCEEEECCCCBCCBTTC
T ss_pred             -------------cCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEe---------ccCCcccccCCCceecCCC
Confidence                         334456999999999999999999999999999998886         4789999888889999999


Q ss_pred             cEEEEEEeccceeecccc
Q psy16852        561 SVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       561 ~~~l~C~~~~~~~~~~~~  578 (579)
                      .++|.|.+.+.|++.|.|
T Consensus       494 ~~~l~c~~~g~p~~~v~W  511 (570)
T 3b43_A          494 EVQLQATIEGAEPISVAW  511 (570)
T ss_dssp             CEEEEEEEESCSSCCCEE
T ss_pred             eEEEEEEEecCCCCEEEE
Confidence            999999999999998877

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.2e-61  Score=495.06  Aligned_cols=466  Identities=27%  Similarity=0.459  Sum_probs=381.4

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      .+||.|...+.++.+.+|+++.|.|.+.|.|.+.|+|||||..+....++.........+|.|.++..+|+|.|+|.|.|
T Consensus        99 ~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  178 (570)
T 3b43_A           99 KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN  178 (570)
T ss_dssp             CCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEe
Confidence            36889999999999999999999999999999999999999999888777776677788999999999999999999999


Q ss_pred             CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852         84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC  163 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  163 (579)
                      ..|....+..+.|....   .+|.+...+....+.+|+.+.|.|.+.|.|++.|+|++++..+..+.+..+...  .+..
T Consensus       179 ~~g~~~~~~~l~v~~~~---~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~--~~~~  253 (570)
T 3b43_A          179 PLGTASSSAKLTLSEHE---VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV--ENTA  253 (570)
T ss_dssp             TTEEEEEEEEEEEECCC---CCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEE--TTEE
T ss_pred             CCcEEEEEEEEEEcCCC---CCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEE--CCEE
Confidence            99988888888886532   355666666677788999999999999999999999999999877666555433  3457


Q ss_pred             EEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCC-ceeeCCCCeEEEEEEEEccCCCe
Q psy16852        164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ-ALLVPKDSTVTLEAEYTGTPTPE  242 (579)
Q Consensus       164 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~  242 (579)
                      .|.|.++..+|+|.|+|.|.|..|....+..+.+.           .+|.+..... ...+.+|+.+.|.|.+.|.|.+.
T Consensus       254 ~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~-----------~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~  322 (570)
T 3b43_A          254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-----------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIK  322 (570)
T ss_dssp             EEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCB-----------CCCEEEECCCSBCCEESSCEEEEEEEEESSSSCE
T ss_pred             EEEEcccCcccCEEEEEEEECCCCcEEEEEEEEee-----------cCCcccccCCCccEEcCCCcEEEEEEEeeCCCCE
Confidence            89999999999999999999999987776666554           5666655433 34577899999999999999999


Q ss_pred             EEEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCc
Q psy16852        243 VKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTAS  319 (579)
Q Consensus       243 v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~  319 (579)
                      +.|++++..+....   .........|.|.+++.+|+|.|+|.|.|..|....+..+.|...+  .+.....    ....
T Consensus       323 v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P--~~~~~~~----~~~~  396 (570)
T 3b43_A          323 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP--VFRKKPH----PVET  396 (570)
T ss_dssp             EEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCC--EECSCCC----CEEE
T ss_pred             EEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCC--eeecCCC----ceee
Confidence            99999999987654   2334566789999999999999999999999998887777765332  1111110    0011


Q ss_pred             eeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852        320 FQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE  399 (579)
Q Consensus       320 ~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  399 (579)
                      .......+.|.+.|.|.+.+.|++++..+..+.++.+..+ +....|.|.++..+|+|.|+|.|.|..|.......|.|.
T Consensus       397 ~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  475 (570)
T 3b43_A          397 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK  475 (570)
T ss_dssp             CTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             cCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEc-CCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec
Confidence            1122334568999999999999999999988877766543 345589999999999999999999999999988888887


Q ss_pred             ecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCce
Q psy16852        400 EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEA  478 (579)
Q Consensus       400 ~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g  478 (579)
                      .      +|.+...+....+..|+.+.|.|.+.|.|+|++.|++++..+.. +.++.+.                     
T Consensus       476 ~------~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~---------------------  528 (570)
T 3b43_A          476 A------PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWIS---------------------  528 (570)
T ss_dssp             C------CCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEEC---------------------
T ss_pred             c------CCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEE---------------------
Confidence            5      88888888888899999999999999999999999999876543 3333321                     


Q ss_pred             eEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       479 ~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                    ..+..+.|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|.
T Consensus       529 --------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          529 --------------YSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             --------------CCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             --------------ECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence                          12345569999999999999999999999999999999874

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=3.7e-57  Score=470.60  Aligned_cols=508  Identities=14%  Similarity=0.176  Sum_probs=373.4

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC---------------CCE--EEEEeCCEEEEEEcCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT---------------EHY--LITTVESVSTLEIINPTK   71 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~---------------~~~--~~~~~~~~~~L~i~~~~~   71 (579)
                      |+.+|.++.+.+|++++|.|...+.+...+.|||+.......               ..+  +... ..+.+|.|.+++.
T Consensus         2 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~-~~~~sL~I~~v~~   80 (642)
T 1e07_A            2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII-YPNASLLIQNIIQ   80 (642)
T ss_pred             ceEeccCCcccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceee-ccCCcEEECCCCc
Confidence            667888999999999999999766666689999944221110               000  1111 1235899999999


Q ss_pred             CCCEEEEEEEEcCC-eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCC
Q psy16852         72 EDIGVYTCKATNIG-GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN  150 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~  150 (579)
                      +|+|.|+|.+.+.. +.....+.|.|...+   .+|.+.. .....+.+|+.+.|.|.+.+ |.+.+.|++++..+....
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~  155 (642)
T 1e07_A           81 NDTGFYTLHVIKSDLVNEEATGQFRVYPEL---PKPSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSP  155 (642)
T ss_pred             ccCcEEEEEEEcCCCeEEEEEEEEEecccC---CCCcEEc-cCceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCC
Confidence            99999999998764 444566677776532   2334433 23456778999999999988 889999999999887665


Q ss_pred             CceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeE
Q psy16852        151 GHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTV  229 (579)
Q Consensus       151 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  229 (579)
                      +..+..    ....|.|.++..+|+|.|+|.+.|..+... ....+.+..          .++.+...+....+.+|+.+
T Consensus       156 ~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~----------~p~~~~~~~~~~~~~~G~~~  221 (642)
T 1e07_A          156 RLQLSN----GNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY----------GPDAPTISPLNTSYRSGENL  221 (642)
T ss_pred             ceEEcC----CCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEe----------CCCCcEEecCCcccccCCEE
Confidence            544332    235799999999999999999999877532 234444431          12222223445568899999


Q ss_pred             EEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccce-eeee
Q psy16852        230 TLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAE-TVMM  308 (579)
Q Consensus       230 ~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~-~~~l  308 (579)
                      .|.|.+.+.|.+.+.|+++|..+..        ...|.|.++..+|+|.|+|.|.|..|....+..+.|.+.... ...+
T Consensus       222 ~l~C~~~g~p~~~i~W~~~g~~i~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i  293 (642)
T 1e07_A          222 NLSCHAASNPPAQYSWFVNGTFQQS--------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFI  293 (642)
T ss_pred             EEEEEcCCCCCcEEEEEECCeEccc--------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEE
Confidence            9999999999999999999988743        246999999999999999999999887665555555443321 1111


Q ss_pred             eeeeeccccCcee-eeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCc
Q psy16852        309 DVRVESHPTASFQ-WFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV  387 (579)
Q Consensus       309 ~~~~~~~~~~~~~-~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  387 (579)
                      ..    .....+. .....+.|.+.|.| +.+.|+++|..+....++.+....   ..|.|.++..+|+|.|+|.|.|..
T Consensus       294 ~~----~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~  365 (642)
T 1e07_A          294 TS----NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDN---RTLTLLSVTRNDVGPYECGIQNEL  365 (642)
T ss_pred             Ec----CCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCC---CEEEEeccCcccCeeEEEEEeCCC
Confidence            11    1111111 12244568888876 699999999998777666554332   389999999999999999999998


Q ss_pred             eeE-EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEE
Q psy16852        388 GEA-VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV  466 (579)
Q Consensus       388 g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~  466 (579)
                      |.. ...+.|.|...     |+.....+....+..|+.++|.|.+.|.|.|.+.|+++|..+..+             ..
T Consensus       366 g~~~s~~~~l~V~~~-----p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~-------------~~  427 (642)
T 1e07_A          366 SVDHSDPVILNVLYG-----PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT-------------QE  427 (642)
T ss_pred             CCcceeeEEEEEEcC-----CCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCC-------------ce
Confidence            864 34577888753     222233345667889999999999999999999999999887432             35


Q ss_pred             EEEccccCCCceeEEEEeeccee--------e------------------------------------------------
Q psy16852        467 LSISEATPQDEAVYSVKASSTET--------K------------------------------------------------  490 (579)
Q Consensus       467 l~i~~~~~~d~g~y~c~~~~~~~--------~------------------------------------------------  490 (579)
                      |.|.++...|.|.|+|.+.|...        .                                                
T Consensus       428 L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~~~~~i~W~~~g~~l  507 (642)
T 1e07_A          428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSL  507 (642)
T ss_pred             EEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCCCCcEEEEEECCEeC
Confidence            99999999999999999998531        0                                                


Q ss_pred             -----eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEE-EEEEEEeeCCcccccccCCccccCCCceEEecCCcEEE
Q psy16852        491 -----IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC-TATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLF  564 (579)
Q Consensus       491 -----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l  564 (579)
                           +......+.|+|.++..+|+|.|+|.|.|..|.... .+.|.|.        ..|+.+...+.+..+..|+.++|
T Consensus       508 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~--------~~p~~~~~~~~~~~v~~g~~~~l  579 (642)
T 1e07_A          508 PVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL--------YGPDTPIISPPDSSYLSGANLNL  579 (642)
T ss_pred             CCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEE--------eCCCcceecCCceeEEcCCcEEE
Confidence                 001112458999999999999999999999997544 6788875        23445666778889999999999


Q ss_pred             EEEeccceeecccc
Q psy16852        565 TAQVGYSERLEIPL  578 (579)
Q Consensus       565 ~C~~~~~~~~~~~~  578 (579)
                      .|.+.++|++.|.|
T Consensus       580 ~C~~~g~p~p~v~W  593 (642)
T 1e07_A          580 SCHSASNPSPQYSW  593 (642)
T ss_pred             EEEeccCCCCeEEE
Confidence            99999999998877

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=8.4e-56  Score=473.25  Aligned_cols=483  Identities=23%  Similarity=0.329  Sum_probs=371.5

Q ss_pred             CCcccccc--CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe------cCCCCEEEEEeCCEEEEEEcCCCCCCCEEE
Q psy16852          6 APRFIEKI--QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL------HATEHYLITTVESVSTLEIINPTKEDIGVY   77 (579)
Q Consensus         6 ~p~~~~~p--~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   77 (579)
                      +|.+...+  ....+.+|+.++|.|.+.|.|.+.+.|+|++...      ....+..  ..  ..+|.|.+++.+|+|.|
T Consensus       246 ~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~--~~--~~~L~i~~v~~~D~G~Y  321 (816)
T 3dmk_A          246 VPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVK--QV--SGTLIIKDAVVEDSGKY  321 (816)
T ss_dssp             CCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEE--EE--TTEEEECSCCGGGCEEE
T ss_pred             CCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceE--ec--cceEEECCCCHhHCEEE
Confidence            56665433  4578999999999999999999999999954321      1222221  11  24899999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEc
Q psy16852         78 TCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN  157 (579)
Q Consensus        78 ~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  157 (579)
                      +|.|.|..|.......+.|..+      +.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....       
T Consensus       322 ~C~a~n~~g~~~~~~~l~V~~~------~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~-------  388 (816)
T 3dmk_A          322 LCVVNNSVGGESVETVLTVTAP------LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-------  388 (816)
T ss_dssp             EEEEECSSCEEEEEEEEEECEE------EEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS-------
T ss_pred             EEEEEcCCCceEEEEEEEEcCC------CceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC-------
Confidence            9999999998877778887643      234444566778899999999999999999999999999875432       


Q ss_pred             CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc
Q psy16852        158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG  237 (579)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~  237 (579)
                           ..|.|.+++.+|+|.|+|.+.|..+....+..+.+..        ...+|.+...+....+.+|+.+.|.|.+.|
T Consensus       389 -----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~--------~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g  455 (816)
T 3dmk_A          389 -----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGG--------RFDPPVIRQAFQEETMEPGPSVFLKCVAGG  455 (816)
T ss_dssp             -----SEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCC--------SSCCCEEEEECCCEEECSSSCEEEEEEEEC
T ss_pred             -----CEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEcc--------ccCCCceEecCcceEEcCCCCEEEEEEEec
Confidence                 3699999999999999999999988776666665531        135677777677778899999999999999


Q ss_pred             cCCCeEEEEECCEEeccCce-EE----e---CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeee
Q psy16852        238 TPTPEVKWFKNGKEIVSKDI-ET----K---DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMD  309 (579)
Q Consensus       238 ~p~~~v~W~~~~~~i~~~~~-~~----~---~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~  309 (579)
                      .|.+.+.|+++|..+..... ..    .   .....|.|.++..+|+|.|+|.|.|..|....+..+.|...+  .+...
T Consensus       456 ~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p--~~~~~  533 (816)
T 3dmk_A          456 NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--YIRQM  533 (816)
T ss_dssp             SSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSC--EECCC
T ss_pred             CCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCC--eeEcc
Confidence            99999999999999876541 11    1   123579999999999999999999999988777777665332  11100


Q ss_pred             eeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccC-CCCCEEEEEEEEcCce
Q psy16852        310 VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVF-PENAGLYSCTAVNPVG  388 (579)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g  388 (579)
                      -     ...........+.|.+.|.|.+.+.|++++..+.........  .++  .|.|.++. .+|+|.|+|.|.|..|
T Consensus       534 ~-----~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~--~~~--~l~i~~v~~~~d~G~Y~C~a~n~~g  604 (816)
T 3dmk_A          534 E-----KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF--PNG--TLIIENVERNSDQATYTCVAKNQEG  604 (816)
T ss_dssp             C-----CEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEEC--TTS--EEEESSCCHHHHCEEEEEEEEESSS
T ss_pred             C-----CeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEe--cCC--eEEEEecCccccCEEEEEEEEECCC
Confidence            0     000111222334578889999999999999998876655443  223  79999998 5899999999999988


Q ss_pred             eE-EEEEEEEEEecccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeE
Q psy16852        389 EA-VAAATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGEC  465 (579)
Q Consensus       389 ~~-~~~~~l~v~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~  465 (579)
                      .. ...+.+.|..      +|.+. .......+..|+.++|.|.+.+.|.+ .+.|+++|..+..+.++.+..       
T Consensus       605 ~~~~~~~~v~v~~------~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~-------  671 (816)
T 3dmk_A          605 YSARGSLEVQVMV------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR-------  671 (816)
T ss_dssp             CEEEEEEEEEEEC------CCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEE-------
T ss_pred             ceeeeeEEEEEec------CCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEE-------
Confidence            54 4456676665      33333 23344568899999999999876665 999999998885544333211       


Q ss_pred             EEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCC
Q psy16852        466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESP  545 (579)
Q Consensus       466 ~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p  545 (579)
                                                 .....+.|.|.++..+|+|.|+|.|.|..|....++.|.|.         .||
T Consensus       672 ---------------------------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~---------~~P  715 (816)
T 3dmk_A          672 ---------------------------VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY---------VPP  715 (816)
T ss_dssp             ---------------------------ETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE---------EEE
T ss_pred             ---------------------------cCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE---------eCC
Confidence                                       12345679999999999999999999999999999988864         788


Q ss_pred             ccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852        546 RFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       546 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~  578 (579)
                      .+...+....+..|++++|.|.+.+.|++.|.|
T Consensus       716 ~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W  748 (816)
T 3dmk_A          716 RWILEPTDKAFAQGSDAKVECKADGFPKPQVTW  748 (816)
T ss_dssp             EEEECCCCEEEETTCCEEEECEEEEESCCEEEC
T ss_pred             ceeeecccceecCCCcEEEEEEEecCCCCeEEE
Confidence            888888899999999999999999999999887

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=2.5e-53  Score=441.69  Aligned_cols=474  Identities=17%  Similarity=0.237  Sum_probs=350.6

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      +|.+.. +....+.+|+.++|.|.+.+ |.+.+.|+++|..+..+.++...  .....|.|.+++.+|+|.|+|.|.|..
T Consensus       112 ~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~  187 (642)
T 1e07_A          112 KPSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLS--NGNRTLTLFNVTRNDTASYKCETQNPV  187 (642)
T ss_pred             CCcEEc-cCceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEc--CCCCEEEEeCCCcccCeeEEEEEecCC
Confidence            455544 34566889999999999988 78899999999999877665443  334689999999999999999999987


Q ss_pred             eee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEE
Q psy16852         86 GVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV  164 (579)
Q Consensus        86 g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  164 (579)
                      |.. +..+.|.|...+.     .....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..             ...
T Consensus       188 ~~~~s~~~~l~V~~~p~-----~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~-------------~~~  249 (642)
T 1e07_A          188 SARRSDSVILNVLYGPD-----APTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS-------------TQE  249 (642)
T ss_pred             CCcccceEEEEEEeCCC-----CcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEccc-------------CCc
Confidence            754 3457777765431     122234456678999999999999999999999999887632             135


Q ss_pred             EEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEE
Q psy16852        165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK  244 (579)
Q Consensus       165 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  244 (579)
                      |.|.+++.+|+|.|+|.+.|..|....+..+.+.+...      ..+|.+.. .....+..|+.+.|.|.+.+.| +.+.
T Consensus       250 L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~------~~~p~i~~-~~~~~~~~g~~v~l~C~~~~~p-~~v~  321 (642)
T 1e07_A          250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE------PPKPFITS-NNSNPVEDEDAVALTCEPEIQN-TTYL  321 (642)
T ss_pred             eEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEcc------CCCCEEEc-CCceeEecCCcEEEEEECCCCC-ccEE
Confidence            99999999999999999999888665544444432211      12233332 2334456688899999998876 6999


Q ss_pred             EEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE-EEEEEEEEeccceeeeeeeeeeccccCceee
Q psy16852        245 WFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR-TSGSVTITVAEAETVMMDVRVESHPTASFQW  322 (579)
Q Consensus       245 W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~  322 (579)
                      |+++|+.+.... ......+..|.|.++..+|+|.|+|.|.|..|... ..+.+.|...+... .+..    ........
T Consensus       322 W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~-~~~~----~~~~~~~g  396 (642)
T 1e07_A          322 WWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDP-TISP----SYTYYRPG  396 (642)
T ss_pred             EEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCC-eecC----CceEecCC
Confidence            999999886544 33334457899999999999999999999988643 33555554332211 1110    01111122


Q ss_pred             eecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecc
Q psy16852        323 FIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE  402 (579)
Q Consensus       323 ~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  402 (579)
                      ....+.|.+.|.|.+.++|+++|..+....            .|.|.++..+|+|.|+|.|.|..|....+..+.+....
T Consensus       397 ~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~------------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~  464 (642)
T 1e07_A          397 VNLSLSCHAASNPPAQYSWLIDGNIQQHTQ------------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA  464 (642)
T ss_pred             CcEEEEEEcCccCCCeEEEEECCEEcCCCc------------eEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEec
Confidence            334456889999999999999998876432            69999999999999999999999877665444443321


Q ss_pred             cCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEE
Q psy16852        403 ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV  482 (579)
Q Consensus       403 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c  482 (579)
                      . ..+|.+.. .....+.+|+.++|.|.+. .|.+.+.|+++|..+..+.++.+.    .....|.|.++...|+|.|+|
T Consensus       465 ~-~~~p~i~~-~~~~~v~~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C  537 (642)
T 1e07_A          465 E-LPKPSISS-NNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNGQSLPVSPRLQLS----NGNRTLTLFNVTRNDARAYVC  537 (642)
T ss_pred             c-CCCceEec-CCceeecCCCeEEEEEECC-CCCcEEEEEECCEeCCCCCcEEEc----CCCcEEEEeecChhcCceEEE
Confidence            1 12455543 3446688999999999999 588899999999999887776653    334689999999999999999


Q ss_pred             Eeecceee---------------------------------------------e--eeeC----CeeEEEEeecccccce
Q psy16852        483 KASSTETK---------------------------------------------I--MTDG----NRSVLLISKITRDQIG  511 (579)
Q Consensus       483 ~~~~~~~~---------------------------------------------~--~~~~----~~~~l~i~~~~~~d~G  511 (579)
                      .+.|....                                             +  ..++    ....|.|.++..+|+|
T Consensus       538 ~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~~~L~i~~~~~~d~G  617 (642)
T 1e07_A          538 GIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNG  617 (642)
T ss_pred             EeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccCceEEECcccccCCe
Confidence            99985310                                             0  0000    1257999999999999


Q ss_pred             eEEEEEEeCCeeEEEEEEEEEe
Q psy16852        512 DVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       512 ~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .|+|.|.|..|....++.|.|.
T Consensus       618 ~Y~C~a~N~~G~~~~s~~l~V~  639 (642)
T 1e07_A          618 TYACFVSNLATGRNNSIVKSIT  639 (642)
T ss_pred             EEEEEEEecccCcceeEEEEEE
Confidence            9999999999999999998875

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=2e-52  Score=447.12  Aligned_cols=460  Identities=22%  Similarity=0.302  Sum_probs=353.7

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      ||.+...|....+.+|++++|.|.+.+.|.+.+.|+++|..+....          ..|.|.+++.+|+|.|+|.+.|..
T Consensus       343 ~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~----------~~L~i~~v~~~d~G~Y~C~a~n~~  412 (816)
T 3dmk_A          343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDR  412 (816)
T ss_dssp             EEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC----------CEEEEcCCCHHHCEEEEEEEECCC
Confidence            5566677888999999999999999999999999999999886543          469999999999999999999998


Q ss_pred             eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEc---CCCCe
Q psy16852         86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN---PTTGE  162 (579)
Q Consensus        86 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~---~~~~~  162 (579)
                      |....+..+.|...   ..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...........   .....
T Consensus       413 g~~~~~~~l~v~~~---~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~  489 (816)
T 3dmk_A          413 ESAEASAELKLGGR---FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV  489 (816)
T ss_dssp             CEEEECCEEECCCS---SCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEE
T ss_pred             CcEEEEEEEEEccc---cCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcE
Confidence            88777777777543   2356666666777889999999999999999999999999999876665443321   11223


Q ss_pred             EEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCe
Q psy16852        163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE  242 (579)
Q Consensus       163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  242 (579)
                      ..|.|.++..+|+|.|+|.+.|..|....+..+.+.           .+|.+ .......+.+|+.+.|.|.+.+.|.+.
T Consensus       490 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-----------~~p~~-~~~~~~~v~~G~~v~l~C~~~g~p~~~  557 (816)
T 3dmk_A          490 SYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY-----------GLPYI-RQMEKKAIVAGETLIVTCPVAGYPIDS  557 (816)
T ss_dssp             EEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEEC-----------SSCEE-CCCCCEEEETTCCEEEECCEECSSEEE
T ss_pred             EEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEe-----------cCCee-EccCCeEEecCCeEEEEEEecCCCCCE
Confidence            579999999999999999999999988777777764           34433 333445678999999999999999889


Q ss_pred             EEEEECCEEeccCceEEeCCeEEEEEcccC-CCCCeEEEEEEEcCCeee-EEEEEEEEEeccceeeeeeeeeeccccCce
Q psy16852        243 VKWFKNGKEIVSKDIETKDNVTKLVIKQTT-KKTTGKYEIRVVNEAGEA-RTSGSVTITVAEAETVMMDVRVESHPTASF  320 (579)
Q Consensus       243 v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~a~n~~g~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~  320 (579)
                      +.|++++..+.............|.|.++. .+|+|.|+|.|.|..|.. .....+.|...+  .+...   ........
T Consensus       558 i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p--~~~~~---~~~~~~~~  632 (816)
T 3dmk_A          558 IVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLP--RIIPF---AFEEGPAQ  632 (816)
T ss_dssp             EEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCC--CCBCC---CCCSSCEE
T ss_pred             EEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCC--ccccc---cccccccC
Confidence            999999999876553333344579999998 589999999999998853 334444444322  11110   00011112


Q ss_pred             eeeecCeeEEEeeeCC-CeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852        321 QWFIHSEPVVVTGKPT-PLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE  399 (579)
Q Consensus       321 ~~~~~~~~~~~~g~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  399 (579)
                      ......+.|.+.+.|. +.+.|+++|..+...............+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       633 ~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  712 (816)
T 3dmk_A          633 VGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY  712 (816)
T ss_dssp             SSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE
T ss_pred             CCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE
Confidence            2333445577766555 499999999998766555555555667799999999999999999999999999999999998


Q ss_pred             ecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCcee
Q psy16852        400 EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV  479 (579)
Q Consensus       400 ~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  479 (579)
                      .      +|.+...+....+..|+.++|.|.+.|.|.|.++|++++..+..... .+                ...+   
T Consensus       713 ~------~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~-~~----------------~~~~---  766 (816)
T 3dmk_A          713 V------PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK-DL----------------KKSD---  766 (816)
T ss_dssp             E------EEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCB-CC----------------CCBT---
T ss_pred             e------CCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCcccc-cc----------------ccCC---
Confidence            6      77787777788899999999999999999999999998765432211 00                0000   


Q ss_pred             EEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        480 YSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       480 y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                .+..  ..+.|.|.+++.+|+|.|+|.|.|..|.+..++.+..+
T Consensus       767 ----------~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~  808 (816)
T 3dmk_A          767 ----------NIRV--EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV  808 (816)
T ss_dssp             ----------TEEE--ETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             ----------CEEe--cCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEe
Confidence                      0000  12359999999999999999999999999999888765

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=1.3e-52  Score=425.49  Aligned_cols=460  Identities=13%  Similarity=0.138  Sum_probs=312.3

Q ss_pred             CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ....||.|...+.++.+.+|+.++|.|.+.+    .++|+++|..+.        .......|.|.+++.+|+|.|+|.+
T Consensus        32 ~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~--------~~~~~~~L~I~~~~~~D~G~Y~C~a   99 (524)
T 2ec8_A           32 GEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET--------NENKQNEWITEKAEATNTGKYTCTN   99 (524)
T ss_dssp             -CCCCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC--------EEECSSEEEESSCCSTTCEEEEEEE
T ss_pred             CCCCCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc--------ccCccceEEEcccchhhCEEEEEee
Confidence            3467899888888999999999999999875    899999998761        1224478999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEE-CCEEccCCCCceEEEcCCC
Q psy16852         82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTT  160 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~  160 (579)
                      .|  |. ..++.|.|..+      +.+...+....+.+|+.+.|.|.+.+.+.+.+.||+ ++..+..+.+..  .... 
T Consensus       100 ~n--g~-~~~~~l~V~~p------~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~--~~~~-  167 (524)
T 2ec8_A          100 KH--GL-SNSIYVFVRDP------AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFI--PDPK-  167 (524)
T ss_dssp             TT--SC-EEEEEEECCCS------SCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEE--EETT-
T ss_pred             cC--Cc-ceEEEEEECCC------CcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCcee--ECCC-
Confidence            88  43 55666666532      223345566778899999999999876668999998 666665443332  2222 


Q ss_pred             CeEEEEECcCCCCCCe-EEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc
Q psy16852        161 GECVLSISEATPQDEA-VYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT  238 (579)
Q Consensus       161 ~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  238 (579)
                        ..|.|.+++.+|+| .|+|.+.|..+.... ...+.+..       ....+|.+...+....+.+|+.+.|.|.+.+.
T Consensus       168 --~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~-------~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~  238 (524)
T 2ec8_A          168 --AGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRP-------AFKAVPVVSVSKASYLLREGEEFTVTCTIKDV  238 (524)
T ss_dssp             --TEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEEC-------CCCSCCEEECSCSEEEEETTSCEEEEEEEEES
T ss_pred             --ccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEe-------CCCCCCcEEecCCcceEEcCCcEEEEEEEecC
Confidence              26999999999999 999999987654422 33343321       01256777777777789999999999999998


Q ss_pred             CCCe-EEEEECCEEe--ccCc-eE-----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeee
Q psy16852        239 PTPE-VKWFKNGKEI--VSKD-IE-----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMD  309 (579)
Q Consensus       239 p~~~-v~W~~~~~~i--~~~~-~~-----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~  309 (579)
                      |.+. +.|++++..+  .... ..     .......|.|.++..+|+|.|+|.|.|..|.......+.|.  ..+.+.+.
T Consensus       239 p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~--~~p~~~~~  316 (524)
T 2ec8_A          239 SSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV--DKGFINIF  316 (524)
T ss_dssp             STTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEE--SSCEEEEE
T ss_pred             CCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEe--ccCceEee
Confidence            8885 9999999873  2211 11     12345789999999999999999999999988776666665  33333322


Q ss_pred             eeeeccccCceeeeecCeeEEEeeeCCCe-EEEEECCEEccCCCeEEEEECCC----CeEEEEEcccCCCCCEEEEEEEE
Q psy16852        310 VRVESHPTASFQWFIHSEPVVVTGKPTPL-VTWSHDGTPMKEGKEVTIYQDTD----GLCKLAISEVFPENAGLYSCTAV  384 (579)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~  384 (579)
                      ... .............+.|.+.|.|.+. +.|+++|..+............+    ..+.|.|.++..+|+|.|+|.|.
T Consensus       317 ~~~-~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  395 (524)
T 2ec8_A          317 PMI-NTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVS  395 (524)
T ss_dssp             ESS-CSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCC-CceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEE
Confidence            110 0000111112234568999999999 99999999887765322212222    34689999999999999999999


Q ss_pred             cCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCe
Q psy16852        385 NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE  464 (579)
Q Consensus       385 n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~  464 (579)
                      |..|....++.|.|..      +|.+...+.   ..+|   +|.|.+.|.|.|.|.|++++..+........ .  .+..
T Consensus       396 N~~g~~~~~~~l~V~~------~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~-~--~~~~  460 (524)
T 2ec8_A          396 NSDVNAAIAFNVYVNT------KPEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVL-P--VDVQ  460 (524)
T ss_dssp             CSSCEEEEEEEEEECE------EEEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----------CC-C--CCCC
T ss_pred             ecCceEEEEEEEEEec------CCeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcccccccccC-C--CCce
Confidence            9999999999999976      666664333   3455   9999999999999999999876532100000 0  0000


Q ss_pred             EEEEEccccCCCceeEEEEeecceeeeeeeCCeeE-EEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV-LLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       465 ~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~-l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                        .  ...                 ....++.... +.+.....+|+|.|+|.|.|.+|....++.|.|+
T Consensus       461 --~--~~~-----------------~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  509 (524)
T 2ec8_A          461 --T--LNS-----------------SGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFK  509 (524)
T ss_dssp             --C--CCC------------------CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-
T ss_pred             --e--eee-----------------ccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEe
Confidence              0  000                 0001111111 1233334689999999999999999999999876

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=5.6e-51  Score=407.97  Aligned_cols=445  Identities=15%  Similarity=0.109  Sum_probs=286.6

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS   91 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~   91 (579)
                      .+.++.|.+|++++|.|.+.+.+..++.|++++..+.....+.. ......+|.|.+++.+|+|.|+|.|.|..+.....
T Consensus        54 ~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~-~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~  132 (527)
T 3qs9_E           54 EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL  132 (527)
T ss_dssp             --CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEE
T ss_pred             eeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCC-CcceEEEEEECcCChhhCeeEEEEEEeccccEEEE
Confidence            45589999999999999998877789999999998765554432 12234679999999999999999999988877666


Q ss_pred             EEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCC
Q psy16852         92 ANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus        92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      ..+.|..       ..+.....+.....|+.+.|.|.+.|+|.|.|.|++++..+.....      ............+.
T Consensus       133 ~~v~v~~-------~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~------~~~~~~~~~~~~~~  199 (527)
T 3qs9_E          133 FTVSIRN-------TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKE------ESPAVVKKEEKVLH  199 (527)
T ss_dssp             EEEEEC------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------------CEEECCSEEC
T ss_pred             EEEEECC-------ceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccc------cCCcEEEEeeeecc
Confidence            6666531       1111122233445678889999999999999999998775432110      00111223333455


Q ss_pred             CCCCeEEEEEEEcCCceeEEE-EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEE-ccCCCeEEEEECC
Q psy16852        172 PQDEAVYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNG  249 (579)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~  249 (579)
                      ..|+|.|+|.|.|..|..... ..+.+.           .+|.+  ++....+.+|+.+.|.|.+. +.|.+.+.|++++
T Consensus       200 ~~d~G~Y~C~A~N~~G~~~~~~~~l~V~-----------~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g  266 (527)
T 3qs9_E          200 ELFGTDIRCCARNELGRECTRLFTIDLN-----------QTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELEN  266 (527)
T ss_dssp             CCCSSCEEEEEECSSCEEEEECEEEESS-----------SCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSS
T ss_pred             ccCCEEEEEEEEeCCCcccceEEEEEEe-----------ccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECC
Confidence            889999999999998876553 333332           23332  34566788999999999996 8999999999999


Q ss_pred             EEeccCceE----E-----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCce
Q psy16852        250 KEIVSKDIE----T-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASF  320 (579)
Q Consensus       250 ~~i~~~~~~----~-----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~  320 (579)
                      ..+......    .     ......|.|.+++.+|+|.|+|.|.|.   ...++.+.  +...+.+.+....  ......
T Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~--V~~~p~i~~~~~~--~~~~v~  339 (527)
T 3qs9_E          267 KALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVT--IVEKGFINATNSS--EDYEID  339 (527)
T ss_dssp             SCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEE--EC--CEEECCCSC--CEECCC
T ss_pred             EECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEE--EEccCccccccCc--ccEEEc
Confidence            877554211    1     122356999999999999999999887   33344444  4333333222110  001111


Q ss_pred             eeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEe
Q psy16852        321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE  400 (579)
Q Consensus       321 ~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  400 (579)
                      ......+.|.+.|.|.|.++|+++|..+.......     .....|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       340 ~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~  414 (527)
T 3qs9_E          340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL-----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR  414 (527)
T ss_dssp             TTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC-----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc-----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            22334456999999999999999999987654321     1223799999999999999999999999999999998875


Q ss_pred             cccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeE
Q psy16852        401 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVY  480 (579)
Q Consensus       401 ~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  480 (579)
                            +|.+.....        ..+|.|.+.|.|.|.|.|++++..........     ..+...   ......     
T Consensus       415 ------~P~i~~~~~--------~~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~-----~~~~~~---~~~~~~-----  467 (527)
T 3qs9_E          415 ------KPQVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEI-----TEGVWN---RKANRK-----  467 (527)
T ss_dssp             ------CCEEEECCC--------CE---EEEECSSCCEEEEECCC-----CCCCC-----CCCEEE---C----------
T ss_pred             ------CCeEEEeCC--------CCEEEEEEEEEcCCeEEEEECCCCcCCCcccc-----ccccce---eccccc-----
Confidence                  777764432        23689999999999999999876542211100     000000   000000     


Q ss_pred             EEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       481 ~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                               ........++|.|..  .+|+|.|+|.|.|.+|.....+.|.|.
T Consensus       468 ---------~~~~~~~~s~L~i~~--~~d~G~Y~C~A~N~~G~~~~~~~L~V~  509 (527)
T 3qs9_E          468 ---------VFGQWVSSSTLNMSE--AIKGFLVKCCAYNSLGTSCETILLNSP  509 (527)
T ss_dssp             -------------CEEEEECCCCC--SSCSCEEEEEEECSSCEEEEEEEC---
T ss_pred             ---------cCCceEEEEEEEEEE--cCCCEEEEEEEEeCCCCceeEEEEecC
Confidence                     000111223455544  469999999999999999999999764

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=1.2e-49  Score=409.78  Aligned_cols=462  Identities=13%  Similarity=0.139  Sum_probs=320.1

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCC---eeEEEECCEEec--------------CCCCEEEEE--eCCEEEEEEcCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKDGTELH--------------ATEHYLITT--VESVSTLEIINPT   70 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~g~~~~--------------~~~~~~~~~--~~~~~~L~i~~~~   70 (579)
                      +..|.++.+.+|+.++|.|.+.+.+.+   .+.|+|++..+.              ...++.+..  ..+...|+|.+++
T Consensus         4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~   83 (585)
T 2ocw_A            4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS   83 (585)
T ss_pred             ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence            346888999999999999999887643   799999985321              112333332  2345789999999


Q ss_pred             CCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEECCEEcc--
Q psy16852         71 KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEIL--  147 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~--  147 (579)
                      .+|+|.|+|.+.+..+.....+.|.|..      +|.+...+....+.+|+.+.|.|.+.+.+ .+.+.|++++....  
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~------~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~  157 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGLSFDVSLEVSQ------GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVL  157 (585)
T ss_pred             cccCEEEEEEcccCCCCceEEEEEEEec------CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceE
Confidence            9999999999999888777778888864      44556667778899999999999998644 57899999876421  


Q ss_pred             --C---------CCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEe
Q psy16852        148 --P---------DNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV  215 (579)
Q Consensus       148 --~---------~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~  215 (579)
                        .         ..+..+..+ ...+..+|.|.+++.+|+|.|+|.+.|..+.......+.|..          .+    
T Consensus       158 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~----------~~----  223 (585)
T 2ocw_A          158 VIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK----------PE----  223 (585)
T ss_pred             EecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEcc----------CC----
Confidence              1         122223222 223456899999999999999999999888776666666641          11    


Q ss_pred             ccCCceeeCCCCeEEEEEEEEccCC---CeEEEE-ECCE----Eec---------cCceEEe----CCeEEEEEcccCCC
Q psy16852        216 RPLQALLVPKDSTVTLEAEYTGTPT---PEVKWF-KNGK----EIV---------SKDIETK----DNVTKLVIKQTTKK  274 (579)
Q Consensus       216 ~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~-~~~~----~i~---------~~~~~~~----~~~~~l~i~~~~~~  274 (579)
                        +..+.+.+|+.+.|.|.+ +.+.   +.+.|+ ++|.    .+.         .......    .+...|.|.++..+
T Consensus       224 --p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~  300 (585)
T 2ocw_A          224 --PELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKE  300 (585)
T ss_pred             --CceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChh
Confidence              233457789999999997 4443   578886 7773    111         1111111    22337999999999


Q ss_pred             CCeEEEEEEEcCCeeeE----EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeE----EEEE--C
Q psy16852        275 TTGKYEIRVVNEAGEAR----TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLV----TWSH--D  344 (579)
Q Consensus       275 d~G~y~C~a~n~~g~~~----~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i----~W~~--~  344 (579)
                      |+|.|+|.|.|..+...    ..+.+.|.  ..+.+....    ............+.|.+.|.|.+.+    .|++  +
T Consensus       301 d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~--~~p~~~~~~----~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~  374 (585)
T 2ocw_A          301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVN--EESTIPRSP----TVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQN  374 (585)
T ss_pred             hCEEEEEEEEcCCCccccCceeeEEEEEe--cccccccCC----cceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCC
Confidence            99999999999543321    44555554  222221110    0011112233445688889998877    7999  8


Q ss_pred             CE--EccC---------CCeEEEEEC-CCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeec
Q psy16852        345 GT--PMKE---------GKEVTIYQD-TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTK  412 (579)
Q Consensus       345 ~~--~~~~---------~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~  412 (579)
                      |.  .+..         ..++.+... ..+..+|.|.++..+|+|.|+|.| |..|.....+.|.|...     +|.+..
T Consensus       375 g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~-----~p~~~~  448 (585)
T 2ocw_A          375 GRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEG-----EPNLKV  448 (585)
T ss_pred             CCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecC-----cccccc
Confidence            86  4432         233333322 345567999999999999999999 98898888889998763     344433


Q ss_pred             CCCceeeecCCCeEEEEEEE----eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce
Q psy16852        413 PLKPVIAEAQSPATLKATVT----GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE  488 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~----g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~  488 (579)
                       +....+.+|+.++|.|.+.    |.|.|.|.|+++|..+........       .             +.|        
T Consensus       449 -~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~-------~-------------~~~--------  499 (585)
T 2ocw_A          449 -PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGP-------S-------------KAF--------  499 (585)
T ss_pred             -CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCC-------C-------------cce--------
Confidence             5667899999999999997    678889999999987754321100       0             000        


Q ss_pred             eeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEE-EEEEEEeeC
Q psy16852        489 TKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC-TATLSLLPE  535 (579)
Q Consensus       489 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~  535 (579)
                      ..+..++..+.|+|.++..+|+|.|+|.|.|..|.... .+.|.|..+
T Consensus       500 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~  547 (585)
T 2ocw_A          500 VNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEER  547 (585)
T ss_pred             EEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEee
Confidence            01111334567999999999999999999999996554 488888644

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=1.2e-49  Score=403.50  Aligned_cols=467  Identities=13%  Similarity=0.118  Sum_probs=309.7

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE--Ee---c---------CCCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT--EL---H---------ATEHYLITTVESVSTLEIINPTKEDI   74 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~--~~---~---------~~~~~~~~~~~~~~~L~i~~~~~~d~   74 (579)
                      ++..|.++.+.+|++++|.|.+.+.+.+.+.|||++.  .+   .         ...++..........|+|.+++.+|+
T Consensus         3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (523)
T 2rcj_C            3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE   82 (523)
T ss_pred             ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence            3456888999999999999999988888999999752  11   1         12344433345567899999999999


Q ss_pred             EEEEEEEEcCCee---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC--eEEEEECCEEccCC
Q psy16852         75 GVYTCKATNIGGV---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPD  149 (579)
Q Consensus        75 G~Y~C~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~  149 (579)
                      |.|+|.|.|..|.   ....+.+.|...+  ..+|.+...+....+.+|+.+.|.|.+.+.|++  .|.|++++..+..+
T Consensus        83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~--~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  160 (523)
T 2rcj_C           83 SDYYCASWNSSDNSYVFGTGTKVTVLGQP--KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAG  160 (523)
T ss_pred             EEEEEEEccCCCccccccCceEEEeccCC--CcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCc
Confidence            9999999987653   2234566665332  234555444445556689999999999887764  99999999877644


Q ss_pred             CCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCC
Q psy16852        150 NGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPK  225 (579)
Q Consensus       150 ~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~  225 (579)
                      ..........++    .+.|.|.++..+|+|.|+|.|.|..+.......+.+..       ....+|.+........+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~-------~~~~~P~v~~~~~~~~~~~  233 (523)
T 2rcj_C          161 VETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS-------ASTKGPSVFPLAPSSKSTS  233 (523)
T ss_pred             eEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecC-------CCCcCCEEEecCCCccccc
Confidence            322111111122    24699999999999999999999877654444332210       1224455543333345678


Q ss_pred             CCeEEEEEEEEcc-CCC-eEEEEECCEEeccCc---eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852        226 DSTVTLEAEYTGT-PTP-EVKWFKNGKEIVSKD---IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV  296 (579)
Q Consensus       226 g~~~~l~C~~~~~-p~~-~v~W~~~~~~i~~~~---~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~  296 (579)
                      |+.+.|.|.+.+. |.+ .+.|+++|..+....   ..    .....+.|.|.++..+| |.|+|.|.|..|.......+
T Consensus       234 G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l  312 (523)
T 2rcj_C          234 GGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV  312 (523)
T ss_pred             CCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEec
Confidence            9999999999886 777 899999998754211   11    01123589999999999 99999999999876555544


Q ss_pred             EEEeccceeeeeeeeeeccccC-ceeeeecCeeEEEeeeCC----CeEEEEECCEEccCCCeEEEEECCCCe----EEEE
Q psy16852        297 TITVAEAETVMMDVRVESHPTA-SFQWFIHSEPVVVTGKPT----PLVTWSHDGTPMKEGKEVTIYQDTDGL----CKLA  367 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~g~p~----~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~l~  367 (579)
                      .+.  ..+.+.+...   .... ........+.|.+.|.|+    +.++|+++|..+............++.    +.|.
T Consensus       313 ~v~--~~P~~~~~~p---~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~  387 (523)
T 2rcj_C          313 EPL--SLPSVFLFPP---KPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLT  387 (523)
T ss_pred             CCC--cCceEEecCC---CchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEE
Confidence            432  2222221110   0000 122334456788988754    499999999998765433222222222    4699


Q ss_pred             EcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCC-CceeeecCCCeEEEEEEEeeCCC--eEEEeeC
Q psy16852        368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTP--SICWYRG  444 (579)
Q Consensus       368 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~  444 (579)
                      |.++..+|+|.|+|.|.|..+.......+.+.  .....+|.+...+ ....+. |+.++|.|.+.|.|+|  .|.|+++
T Consensus       388 i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~--~~~~~~P~v~~~~~~~~~~~-~~~~~l~C~~~g~~p~~~~v~W~k~  464 (523)
T 2rcj_C          388 VLHQNWLDGKEYKCKVSNKALPAPIEKTISKA--KGQPREPQVYTLPPSREEMT-KNQVSLTCLVKGFYPSDIAVEWESN  464 (523)
T ss_pred             ECHHHhcCCCeEEEEEeCCCCCCceeEEEEcc--cCCCCCCEEEEeCCChHHcc-CCceEEEEEEEeeECCCCEEEEEEC
Confidence            99999999999999999987766544444431  1112366655433 223343 4459999999998766  9999999


Q ss_pred             CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      |..+.......                ......|.|.+.              +.|.+.....+|+|.|+|.|.|....
T Consensus       465 g~~~~~~~~~~----------------~~~~~~gt~~~~--------------~~l~v~~~~~~~~g~Y~C~a~n~~l~  513 (523)
T 2rcj_C          465 GQPENNYKTTP----------------PVLDSDGSFFLY--------------SKLTVDKSRWQQGNVFSCSVMHEALH  513 (523)
T ss_pred             CEECCCeeecc----------------ceeCCCCCEEEE--------------EEEEEChHHccCCCeEEEEEEcCCcC
Confidence            99885432111                111233444433              23777777778899999999998543

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=4.7e-50  Score=398.94  Aligned_cols=426  Identities=18%  Similarity=0.190  Sum_probs=295.6

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCee-----EEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTM-----TWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v-----~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      |...|.+..+.+|++++|.|.+.+ |.+.+     .|+|++..+.. .        ....|.|.+++. |+| |+|.+.+
T Consensus         2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~-~--------~~~~l~i~~v~~-d~g-Y~C~a~~   69 (450)
T 1z7z_I            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG-N--------NRKVYELSNVQE-DSQ-PMCYSNC   69 (450)
T ss_dssp             CEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST-T--------TEEEEEEEEECS-CBC-CEEEEEE
T ss_pred             cccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC-C--------CceEEEEEeccc-CCe-eEEEEeC
Confidence            567889999999999999999998 88888     99998875532 2        225799999987 999 9999987


Q ss_pred             CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC---eEEEEECCEEccCCCCceEEEcCCC
Q psy16852         84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILPDNGHTMEFNPTT  160 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~~~~~~~~~~~~~~~  160 (579)
                      ..+..+..+.|.|...     +..+...+.+..+.+|+.+.|.|.+.+.|++   .|.|++++..+......     ...
T Consensus        70 ~~~~~~~~~~l~V~~~-----P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~-----~~~  139 (450)
T 1z7z_I           70 PDGQSTAKTFLTVYWT-----PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-----GEP  139 (450)
T ss_dssp             TTEEEEEECEEEEEBC-----CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-----TTT
T ss_pred             CCCcceeEEEEEEEeC-----CCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc-----ccc
Confidence            7777777788888753     2223345566778899999999999998887   99999999887543211     122


Q ss_pred             CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeecccc-CCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-
Q psy16852        161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTI-DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-  238 (579)
Q Consensus       161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-  238 (579)
                      ....|.|.+++.+|+|.|+|.+.|..|.........+...... .......+|.+..+   ..+.+|+.+.|.|.+.+. 
T Consensus       140 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~---~~v~~G~~v~l~C~~~g~~  216 (450)
T 1z7z_I          140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP---RVLEVDTQGTVVCSLDGLF  216 (450)
T ss_dssp             EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC---SEEETTSEEEEEEEEESCT
T ss_pred             cceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc---eeEEeCCcEEEEEEeeCCC
Confidence            3468999999999999999999988664221111111000000 00001123443322   468899999999999998 


Q ss_pred             C--CCeEEEEECCEEeccCceEEeCCeEEEE-EcccCCCCCe--EEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeee
Q psy16852        239 P--TPEVKWFKNGKEIVSKDIETKDNVTKLV-IKQTTKKTTG--KYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE  313 (579)
Q Consensus       239 p--~~~v~W~~~~~~i~~~~~~~~~~~~~l~-i~~~~~~d~G--~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~  313 (579)
                      |  .+.+.|++++..+.. ..........+. ..++..+|+|  .|+|.|.|..|.......+.|...+.+.+.+.    
T Consensus       217 P~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~----  291 (450)
T 1z7z_I          217 PVSEAQVHLALGDQRLNP-TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT----  291 (450)
T ss_dssp             TGGGCEEEEEETTEECCC-EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES----
T ss_pred             CCCceEEEEeCCCEeCCc-eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC----
Confidence            6  679999999998876 222333332222 2267899999  99999999999888888888776544443322    


Q ss_pred             ccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCce----e
Q psy16852        314 SHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG----E  389 (579)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----~  389 (579)
                        ...........+.|.+.  |.+.++|  +|.++...         .....|.|..+..+|+|.|+|.|.|..+    .
T Consensus       292 --~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~---------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~  356 (450)
T 1z7z_I          292 --KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL---------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIH  356 (450)
T ss_dssp             --CSEEETTCEEEEEEEC-----------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEE
T ss_pred             --CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCC---------CceEEEEEecCcccCCceEEEEEEcCCCCcccc
Confidence              11122223334457766  8899999  77766211         1223799999999999999999997655    3


Q ss_pred             EEEEEEEEEEecccCCCCCeeecCC--CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEE
Q psy16852        390 AVAAATLAVEEKEESGEAPKFTKPL--KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL  467 (579)
Q Consensus       390 ~~~~~~l~v~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l  467 (579)
                      ...++.|.|..      +|.+....  ....+.+|+.++|.|.+.|.|.|.+.|+|+|..+...+.              
T Consensus       357 ~~~~~~l~V~~------~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~--------------  416 (450)
T 1z7z_I          357 KNQTRELRVLY------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE--------------  416 (450)
T ss_dssp             EEEEEECEEEE------EEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS--------------
T ss_pred             cceeEEEEEec------CCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCC--------------
Confidence            34677888876      55555443  556899999999999999999999999999874422110              


Q ss_pred             EEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       468 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                                     .+   .++.+|+|.|+|.|.|..|....++.|.|+
T Consensus       417 -------------------------------~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  448 (450)
T 1z7z_I          417 -------------------------------SV---TVTRDLEGTYLCRARSTQGEVTREVTVNVL  448 (450)
T ss_dssp             -------------------------------CE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -------------------------------eE---eEehhhCeEEEEEEEeCCCceeEEEEEEEE
Confidence                                           02   577899999999999999999999999986

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=2.6e-51  Score=436.80  Aligned_cols=462  Identities=19%  Similarity=0.256  Sum_probs=65.7

Q ss_pred             cccccc-CceeeeCCCCEEEEEEEEee--CCCeeEEEECCEEecCCCCEEEE--------EeCCEEEEEEcCCCCCCCEE
Q psy16852          8 RFIEKI-QPVVSHQEQPALFTCKVEGH--PLPTMTWQKDGTELHATEHYLIT--------TVESVSTLEIINPTKEDIGV   76 (579)
Q Consensus         8 ~~~~~p-~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g~~~~~~~~~~~~--------~~~~~~~L~i~~~~~~d~G~   76 (579)
                      .+...| .++.+.+|++++|.|.+.+.  +.+.+.|++++..+.........        .......|.|.+++.+|+|.
T Consensus       225 ~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  304 (772)
T 3v2a_R          225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL  304 (772)
T ss_dssp             EEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSE
T ss_pred             eeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeE
Confidence            344444 44789999999999999874  45689999999876543332211        11234789999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEE
Q psy16852         77 YTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF  156 (579)
Q Consensus        77 Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  156 (579)
                      |+|.+.|..+.....+.+.|..+|....   .........+.+|+.+.|.|.+.++|.+.+.|++++..+.......   
T Consensus       305 Y~C~~~~~~~~~~~~~~l~V~~~p~~~~---~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~---  378 (772)
T 3v2a_R          305 YTCAASSGLMTKKNSTFVRVHEKPFVAF---GSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK---  378 (772)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCC-------------------------------------------------------
T ss_pred             EEEEEEcCCcceeEEEEEEEeCCCeeEe---ccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEc---
Confidence            9999999988888888888876432111   1112234567899999999999999999999999988776532211   


Q ss_pred             cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEecc---CCceeeCCCCeEEEEE
Q psy16852        157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP---LQALLVPKDSTVTLEA  233 (579)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C  233 (579)
                          +...|.|.++..+|+|.|+|.+.|..|....+..+.+.+         ..+|.+...   .....+.+|+.+.|.|
T Consensus       379 ----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v---------~~~P~~~~~~~~~~~~~~~~g~~~~l~C  445 (772)
T 3v2a_R          379 ----AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVV---------YVPPQIGEKSLISPVDSYQYGTTQTLTC  445 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEE---------ecCCcccccccCCCccccCCCCcEEEEe
Confidence                336799999999999999999999888655444444331         234433221   1112377899999999


Q ss_pred             EEEccCCCe-EEEEECCEE--------------------------------eccCc--eE----EeCCeEEEEEcccCCC
Q psy16852        234 EYTGTPTPE-VKWFKNGKE--------------------------------IVSKD--IE----TKDNVTKLVIKQTTKK  274 (579)
Q Consensus       234 ~~~~~p~~~-v~W~~~~~~--------------------------------i~~~~--~~----~~~~~~~l~i~~~~~~  274 (579)
                      .+.+.|.+. +.|++++..                                +....  ..    .......|.|.++  +
T Consensus       446 ~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~  523 (772)
T 3v2a_R          446 TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--N  523 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--c
Confidence            999999986 999997322                                11100  00    0011246777766  7


Q ss_pred             CCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeE
Q psy16852        275 TTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEV  354 (579)
Q Consensus       275 d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~  354 (579)
                      |+|.|+|.|.|..|.......+.|..  ++.+.+....     .........+.|.+.|.|.+.+.|++++..+......
T Consensus       524 d~G~Y~C~a~N~~g~~~~~~~l~V~~--~p~i~~~p~~-----~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~  596 (772)
T 3v2a_R          524 VSALYKCEAVNKVGRGERVISFHVTR--GPEITLQPDM-----QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVG  596 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCeEEEEEEEccccccceeEEEEEEC--CceeeccCCc-----ccccCCceEEEEeccCCCCCCcEEEEcCCcccccccC
Confidence            89999999999999877666666553  2222222111     1123334455688999999999999998766433221


Q ss_pred             EEE-------------------ECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEE--EEEEEEEEecccCCCCCeeecC
Q psy16852        355 TIY-------------------QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV--AAATLAVEEKEESGEAPKFTKP  413 (579)
Q Consensus       355 ~~~-------------------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~~~~~~~p~~~~~  413 (579)
                      ...                   ......+.|.|.++..+|+|.|+|.|.|..+...  ....+.|...    .+|.+...
T Consensus       597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~----~~P~~~~~  672 (772)
T 3v2a_R          597 ELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER----VAPTITGN  672 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeeccccc----CCCEeecC
Confidence            110                   1222344699999999999999999999665443  2344555322    47888877


Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +....+.+|+.++|.|.+.|.|.|+|.|+|+|..+..+.++.+.                                    
T Consensus       673 ~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~------------------------------------  716 (772)
T 3v2a_R          673 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK------------------------------------  716 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEc------------------------------------
Confidence            77788999999999999999999999999999988665433221                                    


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcc
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEV  538 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~  538 (579)
                       ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+++.
T Consensus       717 -~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  760 (772)
T 3v2a_R          717 -DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK  760 (772)
T ss_dssp             ---------------------------------------------
T ss_pred             -CCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCc
Confidence             12345999999999999999999999999999999998754433

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=2e-50  Score=429.98  Aligned_cols=515  Identities=15%  Similarity=0.185  Sum_probs=121.9

Q ss_pred             ccCceeeeCC--CCEEEEEEEEeeCCCeeEEEEC--CEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852         12 KIQPVVSHQE--QPALFTCKVEGHPLPTMTWQKD--GTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus        12 ~p~~~~v~~G--~~~~l~C~~~~~~~~~v~W~~~--g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      .+..+.+.+|  +.++|.|.+.+ |.+.+.|+++  +..+.........  .....|.|.+++.+|+|.|+|.+.+....
T Consensus       132 ~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  208 (772)
T 3v2a_R          132 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW--DSKKGFTIPSYMISYAGMVFCEAKINDES  208 (772)
T ss_dssp             CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCEE--ETTTEEEEEGGGTTTCSEEEEEEEETTEE
T ss_pred             cceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceeec--CCCCCeEecCCChhhCeEEEEEEEECCce
Confidence            4567889999  89999999976 6679999997  6665443321111  12356999999999999999999986554


Q ss_pred             eEEE-EEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEee--cCCeEEEEECCEEccCCCCceEEE------c
Q psy16852         88 ATCS-ANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGR--PTPSICWYRGKEEILPDNGHTMEF------N  157 (579)
Q Consensus        88 ~~~~-~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~~~~~~~~------~  157 (579)
                      .... ..+.+...    ..+.+. .+.....+.+|+.++|.|.+.+.  +.+.+.|++++..+..........      .
T Consensus       209 ~~s~~~~~~v~~~----~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  284 (772)
T 3v2a_R          209 YQSIMYIVVVVGY----RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE  284 (772)
T ss_dssp             EECCEEEEEEECC----CEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CC
T ss_pred             EEEEEEEEEEecC----ccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeecccccccccc
Confidence            4333 23333221    122222 23445788999999999999874  457999999988754432221111      1


Q ss_pred             CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEecc---CCceeeCCCCeEEEEEE
Q psy16852        158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP---LQALLVPKDSTVTLEAE  234 (579)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~  234 (579)
                      .......|.|.+++.+|+|.|+|.+.|..+.......+.+.           .+|.+...   .....+.+|+.+.|.|.
T Consensus       285 ~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~v~~G~~v~l~C~  353 (772)
T 3v2a_R          285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH-----------EKPFVAFGSGMESLVEATVGERVRIPAK  353 (772)
T ss_dssp             CEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEE-----------CCCC------------------------
T ss_pred             ceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEe-----------CCCeeEeccCCCCcEEEcCCCcEEEEEE
Confidence            11234689999999999999999999988876666666664           23333222   23455788999999999


Q ss_pred             EEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeec
Q psy16852        235 YTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVES  314 (579)
Q Consensus       235 ~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~  314 (579)
                      +.+.|.+.+.|+++|..+.....  ......|.|.++..+|+|.|+|.|.|..|....+..+.+.+...+.+..... ..
T Consensus       354 ~~~~p~~~v~W~~~g~~l~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~-~~  430 (772)
T 3v2a_R          354 YLGYPPPEIKWYKNGIPLESNHT--IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSL-IS  430 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeeeCCCeEEEEECCEeCCCCce--EccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCccccccc-CC
Confidence            99999999999999988865321  1244789999999999999999999998876555555555444333221100 00


Q ss_pred             cccCceeeeecCeeEEEeeeCCCe-EEEEECCEE--------------------------------ccCCC-eEEEEEC-
Q psy16852        315 HPTASFQWFIHSEPVVVTGKPTPL-VTWSHDGTP--------------------------------MKEGK-EVTIYQD-  359 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~g~p~~~-i~W~~~~~~--------------------------------~~~~~-~~~~~~~-  359 (579)
                      ............+.|.+.|.|.+. +.|++++..                                +.... ....... 
T Consensus       431 ~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  510 (772)
T 3v2a_R          431 PVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGK  510 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCc
Confidence            001122334455678999999996 999986332                                11100 0111011 


Q ss_pred             CCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeE
Q psy16852        360 TDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSI  439 (579)
Q Consensus       360 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v  439 (579)
                      ....+.|.|.++  +|+|.|+|.|.|..|.....+.|.|..      +|.+...+. ..+.+|+.+.|.|.+.|.|.+.+
T Consensus       511 ~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~------~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v  581 (772)
T 3v2a_R          511 NKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTR------GPEITLQPD-MQPTEQESVSLWCTADRSTFENL  581 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEEC------CceeeccCC-cccccCCceEEEEeccCCCCCCc
Confidence            112246777776  799999999999999988888888876      454543332 34778999999999999999999


Q ss_pred             EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .|++++..+..........        +...+..     .|+-  .+.............|.|.++..+|+|.|+|.|.|
T Consensus       582 ~W~k~~~~~~~~~~~~~~~--------~~~~~~~-----~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  646 (772)
T 3v2a_R          582 TWYKLGPQPLPIHVGELPT--------PVCKNLD-----TLWK--LNATMFSNSTNDILIMELKNASLQDQGDYVCLAQD  646 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEcCCcccccccCcccc--------ccccccc-----ceee--ccceeeecCCCceEEEEECCCCccCCcEEEEEEEe
Confidence            9999987765433221110        0000000     0000  00000001112345699999999999999999999


Q ss_pred             CCeeEE--EEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852        520 VAGSVT--CTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       520 ~~g~~~--~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~  578 (579)
                      ..|...  ....|.|.       +..+|.+...+.+..+..|++++|.|.+.++|+++|.|
T Consensus       647 ~~~~~~~s~~~~l~v~-------~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W  700 (772)
T 3v2a_R          647 RKTKKRHCVVRQLTVL-------ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMW  700 (772)
T ss_dssp             -------------------------------------------------------------
T ss_pred             CCCCeEEEEEEeeccc-------ccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEE
Confidence            766544  34455554       46889998888889999999999999999999999887

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=3.9e-46  Score=361.61  Aligned_cols=369  Identities=25%  Similarity=0.389  Sum_probs=270.1

Q ss_pred             CCCCccccccCceee---eCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCC-CCCCCEEEEE
Q psy16852          4 VLAPRFIEKIQPVVS---HQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINP-TKEDIGVYTC   79 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v---~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C   79 (579)
                      ..+|.|+..|.+..+   .+|+.+.|.|.+.|.|.|.|+|+|||..+......+....++  .|.|.+. +.+|+|.|+|
T Consensus         3 ~~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g--~l~i~~~~~~~D~G~Y~C   80 (384)
T 3kld_A            3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQC   80 (384)
T ss_dssp             CEEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETT--EEEEESCCHHHHCEEEEE
T ss_pred             CCCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECC--EEEEcCCCCcccCEEEEE
Confidence            357899999999877   689999999999999999999999999997655444444443  5667665 7899999999


Q ss_pred             EEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEE-eecCCeEEEEECCEEccCCCCceEEEc
Q psy16852         80 KATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFN  157 (579)
Q Consensus        80 ~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~  157 (579)
                      .|.|..|.... ...+.+...+     .........+.+.+|+.+.|.|... +.|.+.+.|++++..+....+...  .
T Consensus        81 ~A~N~~G~~~s~~~~l~v~~~~-----~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~--~  153 (384)
T 3kld_A           81 IATNSFGTIVSREAKLQFAYLE-----NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV--S  153 (384)
T ss_dssp             EEEETTEEEECCCEEEEEEEEC-----CCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEE--C
T ss_pred             EEEcCcccEEecceEEEEeccc-----ccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEE--E
Confidence            99999987543 4555554322     1111223456788999999999763 467789999999988764433222  2


Q ss_pred             CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE---EEEEEeeccccCCCCccCCCeE-eccCCceeeCCCCeEEEEE
Q psy16852        158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR---ANLVLRKATTIDKPRVLEAPTI-VRPLQALLVPKDSTVTLEA  233 (579)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C  233 (579)
                      ..  .+.|.|.++..+|+|.|+|.+.|..+.....   ..+.+.....    .....|.+ ...+....+.+|+.+.|.|
T Consensus       154 ~~--~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~----~~~~~p~~~~~~~~~~~~~~G~~v~l~C  227 (384)
T 3kld_A          154 QE--TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV----MGEYEPKIEVQFPETVPAEKGTTVKLEC  227 (384)
T ss_dssp             TT--TCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEE----CCCEEEEEEEECCSEEEEETTSCEEEEE
T ss_pred             cC--CCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCc----ccccCCceeecCCCceEecCCCcEEEEE
Confidence            12  2369999999999999999999987654321   1111111000    00112222 2234456688999999999


Q ss_pred             EEEccCCCeEEEEECCE-EeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeee
Q psy16852        234 EYTGTPTPEVKWFKNGK-EIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRV  312 (579)
Q Consensus       234 ~~~~~p~~~v~W~~~~~-~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~  312 (579)
                      .+.|.|.+.+.|++++. .+.... ....                                                   
T Consensus       228 ~~~g~P~p~i~W~k~~~~~~~~~~-~~~~---------------------------------------------------  255 (384)
T 3kld_A          228 FALGNPVPTILWRRADGKPIARKA-RRHK---------------------------------------------------  255 (384)
T ss_dssp             EEEEESCCEEEEEETTCCCCCTTC-EECT---------------------------------------------------
T ss_pred             EEeecCCCcEEEEeCCCccccccc-eecC---------------------------------------------------
Confidence            99999999999998532 221100 0000                                                   


Q ss_pred             eccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEE
Q psy16852        313 ESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA  392 (579)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  392 (579)
                                                                     ..+  .|.|.++..+|+|.|+|.|.|..|....
T Consensus       256 -----------------------------------------------~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  286 (384)
T 3kld_A          256 -----------------------------------------------SNG--ILEIPNFQQEDAGSYECVAENSRGKNVA  286 (384)
T ss_dssp             -----------------------------------------------TSC--EEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             -----------------------------------------------CCc--EEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence                                                           001  5888888889999999999999888888


Q ss_pred             EEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccc
Q psy16852        393 AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA  472 (579)
Q Consensus       393 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~  472 (579)
                      ...|.|..      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+.               
T Consensus       287 ~~~l~v~~------~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~---------------  345 (384)
T 3kld_A          287 KGQLTFYA------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE---------------  345 (384)
T ss_dssp             EEEEEEEE------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE---------------
T ss_pred             EEEEEEec------CCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe---------------
Confidence            88888876      667776677788999999999999999999999999999998765554431               


Q ss_pred             cCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       473 ~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                              .+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       346 ------------------------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          346 ------------------------QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             ------------------------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ------------------------CCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence                                    1249999999999999999999999999999999985

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.4e-44  Score=351.56  Aligned_cols=369  Identities=24%  Similarity=0.302  Sum_probs=275.7

Q ss_pred             cCCCCccccccCceee---eCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCC-CCCEEEE
Q psy16852          3 EVLAPRFIEKIQPVVS---HQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTK-EDIGVYT   78 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v---~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~   78 (579)
                      +..+|.|...|.+..+   .+|+.++|.|.+.|.|.+.+.|+|+|..+......+....+  ..|.|.++.. +|+|.|+
T Consensus         1 ~~~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~--~~L~i~~~~~~~D~G~Y~   78 (382)
T 1cs6_A            1 RSYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA--GDLVISNPVKAKDAGSYQ   78 (382)
T ss_dssp             CCEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEET--TEEEEESCCHHHHCEEEE
T ss_pred             CCCCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeC--CeEEEecccccccCEEEE
Confidence            3578999999999887   79999999999999999999999999998754322233333  4799999997 9999999


Q ss_pred             EEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEE
Q psy16852         79 CKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEF  156 (579)
Q Consensus        79 C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~  156 (579)
                      |.+.|..|.... .+.+.|...+.     ..........+.+|+.+.|.|.+ .+.|.+.+.|++++..+..........
T Consensus        79 C~a~n~~g~~~s~~~~l~v~~~~~-----~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  153 (382)
T 1cs6_A           79 CVATNARGTVVSREASLRFGFLQE-----FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV  153 (382)
T ss_dssp             EEEEETTEEEECCCEEEEEEEECC-----CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE
T ss_pred             EEEEcCCcEEEecceEEEeecccc-----ccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEE
Confidence            999999886543 46666654321     11123456788899999999995 567889999999987643222222222


Q ss_pred             cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-----EEEEEeeccccCCCCccCCCeEec-cCCceeeCCCCeEE
Q psy16852        157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR-----ANLVLRKATTIDKPRVLEAPTIVR-PLQALLVPKDSTVT  230 (579)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~  230 (579)
                      ..  ..+.|.|.+++.+|+|.|+|.+.+..+.....     ..+.+...     .....+|.+.. .+....+.+|+.+.
T Consensus       154 ~~--~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~-----~~~~~~P~~~~~~~~~~~~~~G~~v~  226 (382)
T 1cs6_A          154 SQ--TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE-----DARQYAPSIKAKFPADTYALTGQMVT  226 (382)
T ss_dssp             CT--TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESC-----CCCCEEEEEEECCCSEEEEETTCCEE
T ss_pred             ec--CceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchh-----hcccCCCceeccCCCceEEeCCCeEE
Confidence            22  22469999999999999999999876433222     12222210     01112344433 24466788999999


Q ss_pred             EEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeee
Q psy16852        231 LEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDV  310 (579)
Q Consensus       231 l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~  310 (579)
                      |.|.+.+.|.+.+.|++++..+...                               .                       
T Consensus       227 l~C~~~g~p~~~i~W~~~~~~~~~~-------------------------------~-----------------------  252 (382)
T 1cs6_A          227 LECFAFGNPVPQIKWRKLDGSQTSK-------------------------------W-----------------------  252 (382)
T ss_dssp             EECEEEEESCCEEEEEECCSCCSCC-------------------------------C-----------------------
T ss_pred             EEEEEccCCCCEEEEEECCcccccE-------------------------------E-----------------------
Confidence            9999999999999999876432100                               0                       


Q ss_pred             eeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeE
Q psy16852        311 RVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA  390 (579)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  390 (579)
                        .                                               .....|.|.++..+|+|.|+|.|.|..|..
T Consensus       253 --~-----------------------------------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  283 (382)
T 1cs6_A          253 --L-----------------------------------------------SSEPLLHIQNVDFEDEGTYECEAENIKGRD  283 (382)
T ss_dssp             --S-----------------------------------------------BSSSEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             --e-----------------------------------------------cCCcEEEEccCChhhCEEEEEEEEcCCCeE
Confidence              0                                               000058888888899999999999999988


Q ss_pred             EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEc
Q psy16852        391 VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSIS  470 (579)
Q Consensus       391 ~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~  470 (579)
                      ...+.|.|..      +|.+...+....+..|+.++|.|.+.|.|.|.+.|+++|..+....++.+.             
T Consensus       284 ~~~~~l~V~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~-------------  344 (382)
T 1cs6_A          284 TYQGRIIIHA------QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS-------------  344 (382)
T ss_dssp             EEEEEEEEEE------EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE-------------
T ss_pred             EEEEEEEEec------CCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE-------------
Confidence            8888888876      667776677788999999999999999999999999999998766544331             


Q ss_pred             cccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        471 EATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       471 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                                .+.|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       345 --------------------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          345 --------------------------GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             --------------------------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             --------------------------CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence                                      1249999999999999999999999999999999985

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.3e-43  Score=347.57  Aligned_cols=370  Identities=19%  Similarity=0.248  Sum_probs=276.6

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEe-ecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcC-----CCCCCeEE
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA-----TPQDEAVY  178 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y  178 (579)
                      ...+...+....+.+|+.++|.|.+.+ .|.+.+.|++++..+.............   +.|.|.++     +.+|+|.|
T Consensus        21 ~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~~~D~G~Y   97 (403)
T 3laf_A           21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPN---GSLLIQNILHSRHHKPDEGLY   97 (403)
T ss_dssp             SSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTT---SCEEECSCCCBTTBCSSCEEE
T ss_pred             eEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecC---CcEEEeeeeccCCCCCcceEE
Confidence            445666788889999999999999976 5778999999999887654444443322   24777776     67799999


Q ss_pred             EEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccC---
Q psy16852        179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK---  255 (579)
Q Consensus       179 ~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~---  255 (579)
                      +|.+.+..+....+..+.+.         +..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...   
T Consensus        98 ~C~~~~~~~~~~~s~~~~l~---------v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~  168 (403)
T 3laf_A           98 QCEASLGDSGSIISRTAKVM---------VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD  168 (403)
T ss_dssp             EEEEECGGGCEEECCCEEEE---------ECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTC
T ss_pred             EEEEEeCCCccEEEEEEEEE---------ecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCc
Confidence            99999765444333223332         124666666677778999999999999999999999999999877432   


Q ss_pred             ceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE-EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeee
Q psy16852        256 DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR-TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK  334 (579)
Q Consensus       256 ~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  334 (579)
                      ..........|.|.++..+|+|.|+|.|.|..+... ....+.|...+.....+..................+.|.+.|.
T Consensus       169 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  248 (403)
T 3laf_A          169 SRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGY  248 (403)
T ss_dssp             CSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEE
T ss_pred             eEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCC
Confidence            222333345799999999999999999999876532 3455555543332211111111111111122334456889999


Q ss_pred             CCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCC
Q psy16852        335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL  414 (579)
Q Consensus       335 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~  414 (579)
                      |.+.+.|++++..+.............   .|.|.++..+|+|.|+|.|.|..|....++.|.|..      +|.+...+
T Consensus       249 p~~~~~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------~p~~~~~~  319 (403)
T 3laf_A          249 PPPSFTWLRGEEVIQLRSKKYSLLGGS---NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------PPWFLNHP  319 (403)
T ss_dssp             SCCEEEEEETTEECCCSSSSEEEETTT---EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------EEEEEECC
T ss_pred             CCCeEEEEECCeeccCCCceEEECCcc---EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC------CCcEeecC
Confidence            999999999999887654333333222   799999999999999999999999999999999986      67777777


Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ....+.+|+.++|.|.+.|.|.|.+.|+++|..+..+.++.+.                                     
T Consensus       320 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~-------------------------------------  362 (403)
T 3laf_A          320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV-------------------------------------  362 (403)
T ss_dssp             CCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEE-------------------------------------
T ss_pred             cceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEe-------------------------------------
Confidence            7788999999999999999999999999999998766554431                                     


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                       ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       363 -~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  400 (403)
T 3laf_A          363 -GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP  400 (403)
T ss_dssp             -TTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             -cCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence             12349999999999999999999999999999999975

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-44  Score=348.91  Aligned_cols=390  Identities=13%  Similarity=0.090  Sum_probs=230.5

Q ss_pred             CCCCEEEEEEEEcCCeee-EEEEEEEE---Eec------ccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEE
Q psy16852         71 KEDIGVYTCKATNIGGVA-TCSANLIV---LEK------EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY  140 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~~g~~-~~~~~~~v---~~~------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~  140 (579)
                      -.|.|.|+|...+..+.. +...+...   ...      ...+..+.+...+.++.+.+|+.+.|.|.+.+.|.+.|.|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~   83 (423)
T 3qs7_E            4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWV   83 (423)
T ss_dssp             ----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEEE
T ss_pred             cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEE
Confidence            468999999987653322 22212111   000      00011122333445788999999999999999999999999


Q ss_pred             ECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCc
Q psy16852        141 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQA  220 (579)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~  220 (579)
                      +++..+........   ......+|.|.+++.+|+|.|+|.|.|..|.......+.|.           .+|.+. +...
T Consensus        84 ~~~~~l~~~~~~~~---~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~-----------~~p~~~-~~~p  148 (423)
T 3qs7_E           84 FKHSSLNCQPHFDL---QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR-----------NTLLYT-LRRP  148 (423)
T ss_dssp             ETTEEECCCCBC--------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC----------------C-EEEE
T ss_pred             ECCCccCccceecc---ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEe-----------cCcccc-ccCC
Confidence            99987654322111   11234579999999999999999999998887766666664           222221 1111


Q ss_pred             eeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEE-cccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        221 LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVI-KQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       221 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i-~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      .....|+.+.|.|.+.|.|.|.+.|++++..+..........  .... .-+...|+|.|+|.|.|..|.... ..+.|.
T Consensus       149 ~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~--~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~-~~~~l~  225 (423)
T 3qs7_E          149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV--VKKEEKVLHELFGTDIRCCARNELGRECT-RLFTID  225 (423)
T ss_dssp             EEEECSSSSCEEEEEEESSCCEEEEEEC-------------C--EEECCSEECCCCSSCEEEEEECSSCEEEE-ECEEEE
T ss_pred             cEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccccccc--ccccceEEecccCeEEEEEEEcCCCCcce-eeEEEE
Confidence            234457788999999999999999999887653211000000  0111 111578999999999999987654 334444


Q ss_pred             eccceeeee-eeeeeccccCceeeeecCeeEEEee-eCCCeEEEEECCEEccCCCeEEEE--ECC---CCeEEEEEcccC
Q psy16852        300 VAEAETVMM-DVRVESHPTASFQWFIHSEPVVVTG-KPTPLVTWSHDGTPMKEGKEVTIY--QDT---DGLCKLAISEVF  372 (579)
Q Consensus       300 ~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~g-~p~~~i~W~~~~~~~~~~~~~~~~--~~~---~~~~~l~i~~~~  372 (579)
                      +...+.... ...+.       .+....+.|.+.| .|.+.++|++++..+.....+...  ...   .....|.|.++.
T Consensus       226 V~~~p~~~~~~~~v~-------~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  298 (423)
T 3qs7_E          226 LNQTPQTTLPQLFLK-------VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA  298 (423)
T ss_dssp             SSSCCCSSTTEEEEE-------TTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCC
T ss_pred             EecCCccCCCceEEe-------CCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecC
Confidence            443322111 01111       1222334588888 677999999999987655333111  111   112479999999


Q ss_pred             CCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCC--CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCC
Q psy16852        373 PENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL--KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP  450 (579)
Q Consensus       373 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~  450 (579)
                      .+|+|.|+|.|.|.   ...++.|.|..      +|.+...+  ....+.+|+.+.|.|.+.|+|.|.|.|+|+|..|..
T Consensus       299 ~~D~G~Y~C~A~N~---~~~~~~L~V~~------~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~  369 (423)
T 3qs7_E          299 RNDTGYYTCSSSKH---PSQSALVTIVE------KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC  369 (423)
T ss_dssp             TTTCEEEEEEETTE---EEEEEEEEEES------SCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEEC
T ss_pred             HHHCEEEEEEEecC---CCceEEEEEEe------CCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCC
Confidence            99999999999997   66777888876      44444322  346788999999999999999999999999998865


Q ss_pred             CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEE
Q psy16852        451 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATL  530 (579)
Q Consensus       451 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  530 (579)
                      ..+..     .+                                  ...+.+.....+|+|.|+|.|.|..|....++.|
T Consensus       370 ~~~~~-----~~----------------------------------~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L  410 (423)
T 3qs7_E          370 EQKGL-----DN----------------------------------GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL  410 (423)
T ss_dssp             BCCBC-----SS----------------------------------SSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEE
T ss_pred             ccccc-----cC----------------------------------CcEEEEEecccccCEEEEEEEEcCCceEEEEEEE
Confidence            43100     00                                  0001124455679999999999999999999999


Q ss_pred             EEe
Q psy16852        531 SLL  533 (579)
Q Consensus       531 ~v~  533 (579)
                      .|.
T Consensus       411 ~v~  413 (423)
T 3qs7_E          411 NIR  413 (423)
T ss_dssp             C--
T ss_pred             EEe
Confidence            986

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.3e-43  Score=346.57  Aligned_cols=378  Identities=20%  Similarity=0.312  Sum_probs=273.9

Q ss_pred             CcCCCCccccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      +...||.|...|.++.+.+|+.++|.|.+.+ .|.+.++|+|+|..+..... .........+|.|.+++.+|+|.|+|.
T Consensus         2 ~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (395)
T 1bih_A            2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALRKDEGSLVFLRPQASDEGHYQCF   80 (395)
T ss_dssp             ---CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT-TEEECTTSCCEEESSCCGGGCEEEEEE
T ss_pred             CcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccc-eEEEecCCceEEEecCCCCCCcEEEEE
Confidence            4557999999999999999999999999998 78889999999999876653 223334456899999999999999999


Q ss_pred             EEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCE--E-ccCC--CCce
Q psy16852         81 ATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKE--E-ILPD--NGHT  153 (579)
Q Consensus        81 ~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~--~-~~~~--~~~~  153 (579)
                      +.|..|.... .+.+.|...+.    |.+  .+....+.+|+.+.|.|.+ .+.|.+.+.|++++.  . ....  ....
T Consensus        81 a~n~~g~~~s~~~~l~v~~~~~----p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  154 (395)
T 1bih_A           81 AETPAGVASSRVISFRKTYLIA----SPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR  154 (395)
T ss_dssp             EEETTEEEECCCEEEEEEEEEC----CCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTT
T ss_pred             EEeCCCeEEeEEEEEEEEEeec----CCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccccccccccc
Confidence            9998886653 35555544321    222  1235567799999999996 889999999999752  1 1111  0222


Q ss_pred             EEEcCCCCeEEEEECcCCCCCCe---EEEEEEEcCCceeEEEEEEEEee-ccc-cCCCCccCCCeEeccCCceeeCCCCe
Q psy16852        154 MEFNPTTGECVLSISEATPQDEA---VYSVKAVNTFGRAECRANLVLRK-ATT-IDKPRVLEAPTIVRPLQALLVPKDST  228 (579)
Q Consensus       154 ~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~~~v~~-~~~-~~~~~~~~~p~~~~~~~~~~~~~g~~  228 (579)
                      +.....   +.|.|.++..+|+|   .|+|.+.|..+............ ... ........+|.+  .+....+.+|+.
T Consensus       155 ~~~~~~---~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~  229 (395)
T 1bih_A          155 ITAGPD---GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDV  229 (395)
T ss_dssp             EEECTT---SCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSC
T ss_pred             EEEcCC---CcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCc
Confidence            332222   26999999999999   99999999988754433222211 110 000011122333  245567889999


Q ss_pred             EEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeee
Q psy16852        229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM  308 (579)
Q Consensus       229 ~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l  308 (579)
                      +.|.|.+.+.|.+.+.|+++|..+....                   ...+                           ..
T Consensus       230 v~l~C~~~g~p~~~i~W~~~g~~~~~~~-------------------~~~~---------------------------~~  263 (395)
T 1bih_A          230 TMIYCMYGSNPMGYPNYFKNGKDVNGNP-------------------EDRI---------------------------TR  263 (395)
T ss_dssp             EEEEEEEECSSCCCCEEEETTEECCCCT-------------------TSSE---------------------------ES
T ss_pred             EEEEEEeccCCCCeEEEEECCEEcCCCC-------------------ceeE---------------------------EE
Confidence            9999999999999999999987653211                   0000                           00


Q ss_pred             eeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCce
Q psy16852        309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG  388 (579)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  388 (579)
                        .                                .               ......|.|.++..+|+|.|+|.|.|..|
T Consensus       264 --~--------------------------------~---------------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  294 (395)
T 1bih_A          264 --H--------------------------------N---------------RTSGKRLLFKTTLPEDEGVYTCEVDNGVG  294 (395)
T ss_dssp             --C--------------------------------S---------------SSTTSEEEESSCCGGGCEEEEEEECCSSS
T ss_pred             --E--------------------------------e---------------cCCCceEEEccCChhhCEEEEEEEEeCCC
Confidence              0                                0               00001688999999999999999999988


Q ss_pred             eEEE-EEEEEEEecccCCCCCeeecCCCc-eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEE
Q psy16852        389 EAVA-AATLAVEEKEESGEAPKFTKPLKP-VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV  466 (579)
Q Consensus       389 ~~~~-~~~l~v~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~  466 (579)
                      .... ++.|.|..      +|.+...+.. ..+.+|+.++|.|.+.|.|.|.+.|+++|..+..+ ++.+.         
T Consensus       295 ~~~~~~~~l~V~~------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~---------  358 (395)
T 1bih_A          295 KPQKHSLKLTVVS------APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT---------  358 (395)
T ss_dssp             SCEEEEEEEEEEE------EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE---------
T ss_pred             CceEEEEEEEEEc------CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE---------
Confidence            7655 78888886      6777766655 78899999999999999999999999999988543 22221         


Q ss_pred             EEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       467 l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                                                    .+.|+|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       359 ------------------------------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          359 ------------------------------DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             ------------------------------TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ------------------------------CCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence                                          114999999999999999999999999999999886

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=5.5e-44  Score=350.47  Aligned_cols=374  Identities=22%  Similarity=0.362  Sum_probs=271.4

Q ss_pred             CCCCccccc-cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEc----CCCCCCCEEEE
Q psy16852          4 VLAPRFIEK-IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEII----NPTKEDIGVYT   78 (579)
Q Consensus         4 ~~~p~~~~~-p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~   78 (579)
                      ..||.|... +.++.+.+|+.++|.|.+.|.|.+.+.|+|+|..+......+.........|.|.    +++.+|+|.|+
T Consensus        14 ~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~   93 (404)
T 3p3y_A           14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ   93 (404)
T ss_dssp             CCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEE
T ss_pred             cCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEE
Confidence            468888864 7778999999999999999999999999999998754322222222234556664    88899999999


Q ss_pred             EEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEE
Q psy16852         79 CKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEF  156 (579)
Q Consensus        79 C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~  156 (579)
                      |.+.|..|... ..+.+.|...+     ........+..+.+|+.+.|.|.+ .+.|.+.+.|++++........ ....
T Consensus        94 C~a~n~~g~~~s~~~~l~V~~~p-----~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~  167 (404)
T 3p3y_A           94 CFARNKFGTALSNRIRLQVSKSP-----LWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDK-RVSQ  167 (404)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCC-----CCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCS-SEEE
T ss_pred             EEEEcCCCeEeeeeEEEEEeccC-----ccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCC-cEEE
Confidence            99999888764 56677776432     122223455788899999999998 7888899999998755443322 2222


Q ss_pred             cCCCCeEEEEECcCCCCC-CeEEEEEEEcCCceeEEE---EEEEEeeccccCCCCccCCCeEeccC---CceeeCCCCeE
Q psy16852        157 NPTTGECVLSISEATPQD-EAVYSVKAVNTFGRAECR---ANLVLRKATTIDKPRVLEAPTIVRPL---QALLVPKDSTV  229 (579)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~p~~~~~~---~~~~~~~g~~~  229 (579)
                      ..   .+.|.|.++..+| +|.|+|.+.|..+.....   ..+.+....    .....+|.+..+.   ....+.+|+.+
T Consensus       168 ~~---~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~----~~~~~~p~~~~~~~~~~~~~~~~G~~v  240 (404)
T 3p3y_A          168 GH---NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTR----GVAERTPSFMYPQGTASSQMVLRGMDL  240 (404)
T ss_dssp             CT---TSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCS----CCCCCCCCBSSSCSSEEEEEEETTSCE
T ss_pred             cC---CCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccC----CccccCCccccccCCCCCceEecCCCE
Confidence            21   2359999999999 599999999987754322   222222111    0111233333322   23458899999


Q ss_pred             EEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeee
Q psy16852        230 TLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMD  309 (579)
Q Consensus       230 ~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~  309 (579)
                      .|.|.+.+.|.+.+.|+++|..+............                                             
T Consensus       241 ~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~---------------------------------------------  275 (404)
T 3p3y_A          241 LLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK---------------------------------------------  275 (404)
T ss_dssp             EEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGT---------------------------------------------
T ss_pred             EEEEEECCCCCCcEEEEECCEECCCCcccccccCc---------------------------------------------
Confidence            99999999999999999999876433211100011                                             


Q ss_pred             eeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCcee
Q psy16852        310 VRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE  389 (579)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  389 (579)
                                                                             .|.|.++..+|+|.|+|.|.|..|.
T Consensus       276 -------------------------------------------------------~L~i~~~~~~d~G~Y~C~a~n~~g~  300 (404)
T 3p3y_A          276 -------------------------------------------------------ALRITNVSEEDSGEYFCLASNKMGS  300 (404)
T ss_dssp             -------------------------------------------------------EEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             -------------------------------------------------------eEEEccCCHhHCEEEEEEEEeCCCc
Confidence                                                                   4677777778888888888888887


Q ss_pred             EEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCe-eEEEcCCCCeEEEE
Q psy16852        390 AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGH-TMEFNPTTGECVLS  468 (579)
Q Consensus       390 ~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~~~l~  468 (579)
                      ....+.|.|..      +|.+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+...... ....          
T Consensus       301 ~~~~~~l~V~~------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~----------  364 (404)
T 3p3y_A          301 IRHTISVRVKA------APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV----------  364 (404)
T ss_dssp             EEEEEEEEEEE------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE----------
T ss_pred             EEEEEEEEEeC------CCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe----------
Confidence            77777777775      566666677778899999999999999999999999999998654321 1100          


Q ss_pred             EccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       469 i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                                 ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       365 ---------------------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          365 ---------------------------AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             ---------------------------ETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ---------------------------cCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence                                       12359999999999999999999999999999999875

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=7.2e-43  Score=349.34  Aligned_cols=376  Identities=13%  Similarity=0.097  Sum_probs=253.0

Q ss_pred             ceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852        114 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA  193 (579)
Q Consensus       114 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  193 (579)
                      ++.+.+|+.++|.|.+.+.|...+.|++++..+.......  .+ ..+..+|.|.+++.+|+|.|+|.+.|..+......
T Consensus        57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~--~~-~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~  133 (527)
T 3qs9_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD--LQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF  133 (527)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC--------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred             eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccC--CC-cceEEEEEECcCChhhCeeEEEEEEeccccEEEEE
Confidence            6789999999999999887889999999988765433332  11 12446799999999999999999999887665555


Q ss_pred             EEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCC
Q psy16852        194 NLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTK  273 (579)
Q Consensus       194 ~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~  273 (579)
                      .+.+..            ..+...........++.+.|.|.+.|.|.|.+.|++++..+.... .............+..
T Consensus       134 ~v~v~~------------~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~  200 (527)
T 3qs9_E          134 TVSIRN------------TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK-EESPAVVKKEEKVLHE  200 (527)
T ss_dssp             EEEEC-----------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECC
T ss_pred             EEEECC------------ceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCcccc-ccCCcEEEEeeeeccc
Confidence            544420            011111112223457777899999999999999999887654221 0111111222334557


Q ss_pred             CCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeee-eeeeeccccCceeeeecCeeEEEe-eeCCCeEEEEECCEEccCC
Q psy16852        274 KTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMM-DVRVESHPTASFQWFIHSEPVVVT-GKPTPLVTWSHDGTPMKEG  351 (579)
Q Consensus       274 ~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~-g~p~~~i~W~~~~~~~~~~  351 (579)
                      .|+|.|+|.|.|..|..... .+.+.+...+.... ...+..       .....+.|.+. |.|.+.++|++++..+...
T Consensus       201 ~d~G~Y~C~A~N~~G~~~~~-~~~l~V~~~p~~~p~~~~v~~-------G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~  272 (527)
T 3qs9_E          201 LFGTDIRCCARNELGRECTR-LFTIDLNQTPQTTLPQLFLKV-------GEPLWIRCKAVHVNHGFGLTWELENKALEEG  272 (527)
T ss_dssp             CCSSCEEEEEECSSCEEEEE-CEEEESSSCCCCSCCEEEECT-------TSCEEEEEEEEESSSCCCEEEECSSSCCCGG
T ss_pred             cCCEEEEEEEEeCCCcccce-EEEEEEeccCccCCCceEEeC-------CCeEEEEEEEccCCCCeEEEEEECCEECCCC
Confidence            89999999999999876553 23444433222110 111111       12233458886 8999999999999988765


Q ss_pred             CeEEEEE--CC---CCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCC--CceeeecCCC
Q psy16852        352 KEVTIYQ--DT---DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL--KPVIAEAQSP  424 (579)
Q Consensus       352 ~~~~~~~--~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~--~~~~~~~g~~  424 (579)
                      ..+....  ..   .....|.|.++..+|+|.|+|.|.|.   ...++.|.|..      +|.+...+  ....+.+|+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~------~p~i~~~~~~~~~~v~~G~~  343 (527)
T 3qs9_E          273 NYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE------KGFINATNSSEDYEIDQYEE  343 (527)
T ss_dssp             GEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--------CEEECCCSCCEECCCTTCC
T ss_pred             ceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEc------cCccccccCcccEEEcCCCe
Confidence            4432211  11   12246999999999999999999997   56677777765      44443322  3467889999


Q ss_pred             eEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        425 ATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       425 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      +.|.|.+.|.|.|.+.|+|+|..+....++.                                       .....|.|.+
T Consensus       344 v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~---------------------------------------~~~~~L~I~~  384 (527)
T 3qs9_E          344 FCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL---------------------------------------DNGYSISKFC  384 (527)
T ss_dssp             CCEEEEEEEESCCEEEEEETTEEEECBCCBC---------------------------------------SSSSEEEEEC
T ss_pred             EEEEEEEEecCCCEEEEEECCEECcCCcccc---------------------------------------cCCcEEEEec
Confidence            9999999999999999999999885543211                                       0223488999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~  578 (579)
                      +..+|+|.|+|.|.|..|....++.|.|         ..+|.+...+.      |  .+|.|.|.++|++.|.|
T Consensus       385 v~~~D~G~YtC~A~N~~g~~~~~~~L~V---------~~~P~i~~~~~------~--~~l~C~a~g~P~p~i~W  441 (527)
T 3qs9_E          385 NHKHQPGEYIFHAENDDAQFTKMFTLNI---------RRKPQVLAEAS------A--SQASCFSDGYPLPSWTW  441 (527)
T ss_dssp             CCTTCCSCEEEEEEETTEEEEEEEEEC-----------CCCEEEECCC------C--E---EEEECSSCCEEEE
T ss_pred             CCcccCEEEEEEEEeCCCcEEEEEEEEE---------ecCCeEEEeCC------C--CEEEEEEEEEcCCeEEE
Confidence            9999999999999999999998888886         47788766543      2  35799999999999887

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=1.4e-42  Score=351.70  Aligned_cols=413  Identities=15%  Similarity=0.144  Sum_probs=274.5

Q ss_pred             CCceEEccCCcEEEEEEEEeecCCeEEEEECCE--Ec---c-------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEE
Q psy16852        112 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKE--EI---L-------PDNGHTMEFNPTTGECVLSISEATPQDEAVYS  179 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  179 (579)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.||+++.  .+   .       .....++......+...|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (523)
T 2rcj_C            7 PPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYY   86 (523)
T ss_pred             CCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEE
Confidence            456788899999999999988889999999742  11   0       01112333334455678999999999999999


Q ss_pred             EEEEcCCcee---EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC--eEEEEECCEEecc
Q psy16852        180 VKAVNTFGRA---ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP--EVKWFKNGKEIVS  254 (579)
Q Consensus       180 C~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~i~~  254 (579)
                      |.+.|..|..   .....+.|...       ...+|.+...+....+.+|+.+.|.|.+.+.|++  .+.|+++|..+..
T Consensus        87 C~a~n~~g~~~~~~~~~~l~V~~~-------~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (523)
T 2rcj_C           87 CASWNSSDNSYVFGTGTKVTVLGQ-------PKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKA  159 (523)
T ss_pred             EEEccCCCccccccCceEEEeccC-------CCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCC
Confidence            9999976532   12334444211       1245555555555556789999999999987654  9999999988765


Q ss_pred             CceEE-----eC----CeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe--ccceeeeeeeeeeccccCceeee
Q psy16852        255 KDIET-----KD----NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV--AEAETVMMDVRVESHPTASFQWF  323 (579)
Q Consensus       255 ~~~~~-----~~----~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~--~~~~~~~l~~~~~~~~~~~~~~~  323 (579)
                      .....     ..    ..+.|.|.++..+|+|.|+|.|.|..+.......+.+..  ...+.+..    ...........
T Consensus       160 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~----~~~~~~~~~G~  235 (523)
T 2rcj_C          160 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFP----LAPSSKSTSGG  235 (523)
T ss_pred             ceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEe----cCCCcccccCC
Confidence            43111     01    124699999999999999999999887655444432211  11122211    00011112334


Q ss_pred             ecCeeEEEeee-CCC-eEEEEECCEEccCCCeEEEEECCCC----eEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEE
Q psy16852        324 IHSEPVVVTGK-PTP-LVTWSHDGTPMKEGKEVTIYQDTDG----LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLA  397 (579)
Q Consensus       324 ~~~~~~~~~g~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  397 (579)
                      ...+.|.+.|. |.+ .++|++++..+........ ...++    .+.|.|.++..+| |.|+|.|.|..|.......+.
T Consensus       236 ~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~  313 (523)
T 2rcj_C          236 TAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  313 (523)
T ss_pred             ceEEEEEEeceeCCCeEEEEecCCcccceEeCCcE-ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecC
Confidence            45567888886 877 8999999987543211111 11222    3589999999999 999999999999877666666


Q ss_pred             EEecccCCCCCee-ecCCCcee-eecCCCeEEEEEEEeeCC----CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEcc
Q psy16852        398 VEEKEESGEAPKF-TKPLKPVI-AEAQSPATLKATVTGRPT----PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE  471 (579)
Q Consensus       398 v~~~~~~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~g~p~----~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~  471 (579)
                      +..      .|.+ ..++.... +.+|+.++|.|.+.|.|+    ++|.|+|+|..+.........              
T Consensus       314 v~~------~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~--------------  373 (523)
T 2rcj_C          314 PLS------LPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPRE--------------  373 (523)
T ss_pred             CCc------CceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCce--------------
Confidence            543      3433 43443333 788999999999998754    499999999988654322110              


Q ss_pred             ccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCC
Q psy16852        472 ATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTP  551 (579)
Q Consensus       472 ~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~  551 (579)
                        ..+.|.|..              .+.|.|.++..+|+|.|+|.|.|..|.......+.+.     ..+..+|.+...+
T Consensus       374 --~~~~g~~~~--------------~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~-----~~~~~~P~v~~~~  432 (523)
T 2rcj_C          374 --QQYNSTYRV--------------VSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA-----KGQPREPQVYTLP  432 (523)
T ss_pred             --ecCCCcEEE--------------EEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcc-----cCCCCCCEEEEeC
Confidence              122233321              2459999999999999999999998877665555531     1245778776554


Q ss_pred             CceEEecCCcEEEEEEeccceee--cccc
Q psy16852        552 ETAKVMDGQSVLFTAQVGYSERL--EIPL  578 (579)
Q Consensus       552 ~~~~~~~g~~~~l~C~~~~~~~~--~~~~  578 (579)
                      .......|+.++|.|.|.+.|++  .|.|
T Consensus       433 ~~~~~~~~~~~~l~C~~~g~~p~~~~v~W  461 (523)
T 2rcj_C          433 PSREEMTKNQVSLTCLVKGFYPSDIAVEW  461 (523)
T ss_pred             CChHHccCCceEEEEEEEeeECCCCEEEE
Confidence            43333345559999999887765  5655

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=3.2e-44  Score=363.84  Aligned_cols=406  Identities=13%  Similarity=0.114  Sum_probs=280.9

Q ss_pred             CeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEE
Q psy16852         85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV  164 (579)
Q Consensus        85 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  164 (579)
                      .|.....+.+.|.      .+|.+........+.+|+.++|.|.+.+    .+.|++++..+.      ..    .....
T Consensus        22 ~g~~~~~i~l~v~------~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~------~~----~~~~~   81 (524)
T 2ec8_A           22 TGSSQPSVSPGEP------SPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET------NE----NKQNE   81 (524)
T ss_dssp             -----------CC------CCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC------EE----ECSSE
T ss_pred             cCCCCCeEEcCCC------CCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc------cc----Cccce
Confidence            3444445556664      4667776667788999999999999875    999999988651      11    12357


Q ss_pred             EEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEE
Q psy16852        165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK  244 (579)
Q Consensus       165 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  244 (579)
                      |.|.+++.+|+|.|+|.+.|  |. .....+.|.           .+|.+...+....+.+|+.+.|.|.+.+.+.+.+.
T Consensus        82 L~I~~~~~~D~G~Y~C~a~n--g~-~~~~~l~V~-----------~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~  147 (524)
T 2ec8_A           82 WITEKAEATNTGKYTCTNKH--GL-SNSIYVFVR-----------DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYS  147 (524)
T ss_dssp             EEESSCCSTTCEEEEEEETT--SC-EEEEEEECC-----------CSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEE
T ss_pred             EEEcccchhhCEEEEEeecC--Cc-ceEEEEEEC-----------CCCcccccccceEEEcCCeEEEECcCCCCccceEE
Confidence            99999999999999999998  42 444444443           23333344556678899999999999887768999


Q ss_pred             EEE-CCEEeccCceEEeCCeEEEEEcccCCCCCe-EEEEEEEcCCeeeEE-EEEEEEEec--cceeeeeeeeeeccccCc
Q psy16852        245 WFK-NGKEIVSKDIETKDNVTKLVIKQTTKKTTG-KYEIRVVNEAGEART-SGSVTITVA--EAETVMMDVRVESHPTAS  319 (579)
Q Consensus       245 W~~-~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~a~n~~g~~~~-~~~~~v~~~--~~~~~~l~~~~~~~~~~~  319 (579)
                      |++ +|..+.............|.|.++..+|+| .|+|.|.|..+.... .+.+.|...  ..+.+.....    ....
T Consensus       148 W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~----~~~v  223 (524)
T 2ec8_A          148 LKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKA----SYLL  223 (524)
T ss_dssp             EECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCS----EEEE
T ss_pred             EEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCC----cceE
Confidence            998 888776554332333447999999999999 999999987665432 445555411  2222221110    0011


Q ss_pred             eeeeecCeeEEEeeeCCCe-EEEEECCEEc--cCCCeEEEEE--CCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEE
Q psy16852        320 FQWFIHSEPVVVTGKPTPL-VTWSHDGTPM--KEGKEVTIYQ--DTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA  394 (579)
Q Consensus       320 ~~~~~~~~~~~~~g~p~~~-i~W~~~~~~~--~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  394 (579)
                      .......+.|.+.|.|.+. +.|++++..+  ..........  .......|.|.++..+|+|.|+|.|.|..|.....+
T Consensus       224 ~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~  303 (524)
T 2ec8_A          224 REGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT  303 (524)
T ss_dssp             ETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEE
T ss_pred             EcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEE
Confidence            1222334568899999886 9999999874  3222221110  012245899999999999999999999999998899


Q ss_pred             EEEEEecccCCCCCeeecCC---CceeeecCCCeEEEEEEEeeCCCe-EEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEc
Q psy16852        395 TLAVEEKEESGEAPKFTKPL---KPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSIS  470 (579)
Q Consensus       395 ~l~v~~~~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~  470 (579)
                      .|.|..      +|.+...+   ....+.+|+.++|.|.+.|.|.|. +.|+++|..+.......+..            
T Consensus       304 ~l~V~~------~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~------------  365 (524)
T 2ec8_A          304 TLEVVD------KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKS------------  365 (524)
T ss_dssp             EEEEES------SCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESC------------
T ss_pred             EEEEec------cCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEE------------
Confidence            999986      55555432   357899999999999999999998 99999998886544211110            


Q ss_pred             cccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccC
Q psy16852        471 EATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKT  550 (579)
Q Consensus       471 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~  550 (579)
                          .+.|.|              ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|.         .+|.+...
T Consensus       366 ----~~~~~~--------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~---------~~P~i~~~  418 (524)
T 2ec8_A          366 ----ENESNI--------------RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---------TKPEILTY  418 (524)
T ss_dssp             ----CSSSCC--------------EEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC---------EEEEEEEE
T ss_pred             ----ccCCCc--------------eeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEe---------cCCeEeec
Confidence                010111              124569999999999999999999999999999888864         67777665


Q ss_pred             CCceEEecCCcEEEEEEeccceeeccccC
Q psy16852        551 PETAKVMDGQSVLFTAQVGYSERLEIPLI  579 (579)
Q Consensus       551 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~  579 (579)
                      +.   ...|   +|.|.+.++|++.|.|.
T Consensus       419 ~~---~~~g---~l~C~~~g~P~p~i~W~  441 (524)
T 2ec8_A          419 DR---LVNG---MLQCVAAGFPEPTIDWY  441 (524)
T ss_dssp             EC---CSSS---CEEEEEEEESCCEEECC
T ss_pred             cc---CcCc---EEEEEEEeecCCEEEEE
Confidence            54   2355   99999999999998883

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=2e-42  Score=339.11  Aligned_cols=371  Identities=22%  Similarity=0.357  Sum_probs=271.3

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCC-----CCCCCEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINP-----TKEDIGVYT   78 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~   78 (579)
                      ....|..+|.++.+.+|++++|.|.+.+ .|.+.+.|+|+|..+......+.... ....|.|.++     +.+|+|.|+
T Consensus        20 ~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~~~~D~G~Y~   98 (403)
T 3laf_A           20 RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQL-PNGSLLIQNILHSRHHKPDEGLYQ   98 (403)
T ss_dssp             CSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEEC-TTSCEEECSCCCBTTBCSSCEEEE
T ss_pred             eeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEe-cCCcEEEeeeeccCCCCCcceEEE
Confidence            4566888999999999999999999987 46778999999999865422222222 2246778777     678999999


Q ss_pred             EEEEcCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCC-ceEE
Q psy16852         79 CKATNIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG-HTME  155 (579)
Q Consensus        79 C~~~~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~  155 (579)
                      |.+.+..+..  ...+.+.|..      ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ....
T Consensus        99 C~~~~~~~~~~~s~~~~l~v~~------p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~  172 (403)
T 3laf_A           99 CEASLGDSGSIISRTAKVMVAG------PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVV  172 (403)
T ss_dssp             EEEECGGGCEEECCCEEEEECC------CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEE
T ss_pred             EEEEeCCCccEEEEEEEEEecC------CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEE
Confidence            9999654322  2345555542      45666667778899999999999999999999999999987753222 2222


Q ss_pred             EcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEE
Q psy16852        156 FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE  234 (579)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~  234 (579)
                      ...   ...|.|.++..+|+|.|+|.+.|..+... ....+.+....     ....++.+...+....+.+|+.+.|.|.
T Consensus       173 ~~~---~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p-----~~~~~~~~~~~~~~~~~~~g~~~~l~C~  244 (403)
T 3laf_A          173 VLP---SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDP-----GLHRQLYFLQRPSNVIAIEGKDAVLECC  244 (403)
T ss_dssp             ECT---TSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCC-----CCCEEEEEEECCCCEEEETTSCEEECCE
T ss_pred             EcC---CceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCC-----CcccCceEecCCCceEecCCCcEEEEEE
Confidence            221   23699999999999999999999876532 23444443211     1111223444556677889999999999


Q ss_pred             EEccCCCeEEEEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeee
Q psy16852        235 YTGTPTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE  313 (579)
Q Consensus       235 ~~~~p~~~v~W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~  313 (579)
                      +.+.|.+.+.|++++..+.... .........|.|.++..+|+|.|+|.|.|..|....+..+.|...+  .+.....  
T Consensus       245 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p--~~~~~~~--  320 (403)
T 3laf_A          245 VSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPP--WFLNHPS--  320 (403)
T ss_dssp             EEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE--EEEECCC--
T ss_pred             cCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCC--cEeecCc--
Confidence            9999999999999999886543 2222233579999999999999999999999988777777775432  1111110  


Q ss_pred             ccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEE
Q psy16852        314 SHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA  393 (579)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  393 (579)
                        ...........+.|.+.|.|.+.+.|+++|..+...........  .  .|.|.++..+|+|.|+|.|.|..|....+
T Consensus       321 --~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  394 (403)
T 3laf_A          321 --NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGG--S--NLRILGVVKSDEGFYQCVAENEAGNAQSS  394 (403)
T ss_dssp             --CEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETT--T--EEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             --ceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecC--c--cEEEeccccccCEEEEEEEEcCCceEEEE
Confidence              00011122234568899999999999999999887766554322  2  79999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy16852        394 ATLAVEE  400 (579)
Q Consensus       394 ~~l~v~~  400 (579)
                      +.|.|..
T Consensus       395 ~~l~V~~  401 (403)
T 3laf_A          395 AQLIVPK  401 (403)
T ss_dssp             EEEECCC
T ss_pred             EEEEEeC
Confidence            9998875

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=4.7e-41  Score=345.75  Aligned_cols=402  Identities=15%  Similarity=0.202  Sum_probs=278.1

Q ss_pred             CCCceEEccCCcEEEEEEEEeecC---CeEEEEECCEEc-----cC---------CCCceEEEcCCCCeEEEEECcCCCC
Q psy16852        111 PLKPVIAEAQSPATLKATVTGRPT---PSICWYRGKEEI-----LP---------DNGHTMEFNPTTGECVLSISEATPQ  173 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~-----~~---------~~~~~~~~~~~~~~~~l~i~~~~~~  173 (579)
                      .+..+.+.+|+.++|.|.+.+.|.   ..+.|++++..+     ..         ..+..+.....++...|.|.+++.+
T Consensus         6 ~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~   85 (585)
T 2ocw_A            6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   85 (585)
T ss_pred             CcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcc
Confidence            345677889999999999987754   389999987532     11         1223333333556678999999999


Q ss_pred             CCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEe
Q psy16852        174 DEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEI  252 (579)
Q Consensus       174 d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i  252 (579)
                      |+|.|+|.+.+..+.......+.+.           .+|.+...+....+.+|+.+.|.|.+.+. |.+.+.|++++...
T Consensus        86 D~G~Y~C~~~n~~~~~~~~~~l~V~-----------~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~  154 (585)
T 2ocw_A           86 DSGRYKCGLGINSRGLSFDVSLEVS-----------QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLY  154 (585)
T ss_pred             cCEEEEEEcccCCCCceEEEEEEEe-----------cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCC
Confidence            9999999999888776666666654           45666666677789999999999999865 45689999987532


Q ss_pred             c----c----------CceEEe-----CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeee
Q psy16852        253 V----S----------KDIETK-----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVE  313 (579)
Q Consensus       253 ~----~----------~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~  313 (579)
                      .    .          ......     .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+...+.    +.
T Consensus       155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~----~~  230 (585)
T 2ocw_A          155 PVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVY----ED  230 (585)
T ss_pred             ceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeE----Ec
Confidence            1    1          111111     12237999999999999999999999988777777776543222111    11


Q ss_pred             ccccCceeeeecCeeEEEeeeCC---CeEEEE-ECCEE---cc---------CCCeEEEEE-CCCCeEEEEEcccCCCCC
Q psy16852        314 SHPTASFQWFIHSEPVVVTGKPT---PLVTWS-HDGTP---MK---------EGKEVTIYQ-DTDGLCKLAISEVFPENA  376 (579)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~g~p~---~~i~W~-~~~~~---~~---------~~~~~~~~~-~~~~~~~l~i~~~~~~d~  376 (579)
                      .+       ....+.|.+ +.|.   +.+.|+ ++|..   +.         ...++.+.. ...+.+.|.|.++..+|+
T Consensus       231 ~G-------~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~  302 (585)
T 2ocw_A          231 LR-------GSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA  302 (585)
T ss_pred             CC-------CcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhC
Confidence            11       112233554 3333   678886 77732   11         122333322 224555899999999999


Q ss_pred             EEEEEEEEcCceeEE-----EEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeE----EEee--CC
Q psy16852        377 GLYSCTAVNPVGEAV-----AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSI----CWYR--GK  445 (579)
Q Consensus       377 G~Y~C~a~n~~g~~~-----~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v----~W~~--~~  445 (579)
                      |.|+|.|.|. |...     ..+.|.|..      +|.+...+....+.+|+.++|.|.+.|.|.|.+    .|++  +|
T Consensus       303 G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g  375 (585)
T 2ocw_A          303 GRYLCGAHSD-GQLQEGSPIQAWQLFVNE------ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNG  375 (585)
T ss_pred             EEEEEEEEcC-CCccccCceeeEEEEEec------ccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCC
Confidence            9999999996 4343     677888876      566666667788999999999999999999976    7999  87


Q ss_pred             E--EcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee--CCeeEEEEeecccccceeEEEEEEeCC
Q psy16852        446 E--EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD--GNRSVLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       446 ~--~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      .  .+........                 ....+++         .+..+  .....|+|.+++.+|+|.|+|.| |..
T Consensus       376 ~~~~l~~~~~~~~-----------------~~~~~r~---------~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~  428 (585)
T 2ocw_A          376 RCPLLVDSEGWVK-----------------AQYEGRL---------SLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGD  428 (585)
T ss_pred             CCceeeeecceee-----------------cccCCCE---------EEeccCCCcEEEEEECCCChhhCEEEEEcc-cCC
Confidence            6  4433211100                 0011111         11111  12235999999999999999999 999


Q ss_pred             eeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEec----cceeecccc
Q psy16852        522 GSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVG----YSERLEIPL  578 (579)
Q Consensus       522 g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~~~~~~~~  578 (579)
                      |....++.|.|.        ..+|.+ ..+....+..|++++|.|.+.    ++|.+.|.|
T Consensus       429 g~~~~~~~l~V~--------~~~p~~-~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W  480 (585)
T 2ocw_A          429 TLWRTTVEIKII--------EGEPNL-KVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKW  480 (585)
T ss_pred             CccceeEEEEEe--------cCcccc-ccCCceeEecCCcEEEEEEecCCCCCCccEEEEE
Confidence            999888999875        224444 347788899999999999996    667777666

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=3.9e-42  Score=335.18  Aligned_cols=357  Identities=19%  Similarity=0.238  Sum_probs=254.0

Q ss_pred             CCceecCCCc-eEEccCCcEEEEEEEEeecCCeEEEEE-CCEEccCCCCceEEEcCCCCeEEEEECcCCCCC------Ce
Q psy16852        105 APKFTKPLKP-VIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQD------EA  176 (579)
Q Consensus       105 ~~~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~G  176 (579)
                      +|.|...+.. +.+.+|+.++|.|.+.|.|.+.|.|++ ++..+....+.....  .+  ++|.|.+++.+|      +|
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~--~~--~~L~i~~~~~~d~~~~~d~G   78 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS--SD--GKLVFPPFRAEDYRQEVHAQ   78 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEEC--ST--TEEEECCCCGGGCCHHHHEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEc--CC--ceEEecccChhhccccccCc
Confidence            3455554443 567889999999999999999999999 676665443333321  22  369999999987      99


Q ss_pred             EEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC---CeEEEEECCEEe
Q psy16852        177 VYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT---PEVKWFKNGKEI  252 (579)
Q Consensus       177 ~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~i  252 (579)
                      .|+|.+.|..|... ....+.+.           .+|.+...+....+.+|+.+.|.|.+.+.+.   +.+.|++++..+
T Consensus        79 ~Y~C~a~n~~g~~~s~~~~v~v~-----------~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~  147 (388)
T 2v5m_A           79 VYACLARNQFGSIISRDVHVRAV-----------VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN  147 (388)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEE-----------CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCE
T ss_pred             eEEEEEEccCCeEEecceEEEEc-----------cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcc
Confidence            99999999988642 22333332           3444444455667889999999999987643   689999998766


Q ss_pred             ccCc-----eEEeCCeEEEEEcccCCCCC-eEEEEEEEcCCeeeEE-E---EEEEEEeccceeeeeeeeeeccccCceee
Q psy16852        253 VSKD-----IETKDNVTKLVIKQTTKKTT-GKYEIRVVNEAGEART-S---GSVTITVAEAETVMMDVRVESHPTASFQW  322 (579)
Q Consensus       253 ~~~~-----~~~~~~~~~l~i~~~~~~d~-G~y~C~a~n~~g~~~~-~---~~~~v~~~~~~~~~l~~~~~~~~~~~~~~  322 (579)
                      ....     .........|.|.+++.+|+ |.|+|.+.|..+.... +   ..+.|.................+......
T Consensus       148 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G  227 (388)
T 2v5m_A          148 YFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA  227 (388)
T ss_dssp             ECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETT
T ss_pred             cccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeC
Confidence            4321     11222334799999999999 9999999987643322 1   23444322110000000000001111112


Q ss_pred             eecCeeEEEeeeCCCeEEEEECCEEc------cCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEE
Q psy16852        323 FIHSEPVVVTGKPTPLVTWSHDGTPM------KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATL  396 (579)
Q Consensus       323 ~~~~~~~~~~g~p~~~i~W~~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  396 (579)
                      ....+.|.+.|.|.+.+.|++++..+      ....+....   .+  .|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus       228 ~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~---~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  302 (388)
T 2v5m_A          228 HTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV---SG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVL  302 (388)
T ss_dssp             SCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEE---TT--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecc---cC--EEEECcCCHHHCeEEEEEEecCCCceeEEEEE
Confidence            23345688899999999999975432      222232221   12  89999999999999999999999999889999


Q ss_pred             EEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCC
Q psy16852        397 AVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD  476 (579)
Q Consensus       397 ~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d  476 (579)
                      .|..      +|.+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+..+                         
T Consensus       303 ~V~~------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~-------------------------  351 (388)
T 2v5m_A          303 TVTA------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------------------------  351 (388)
T ss_dssp             EEEE------EEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------------------------
T ss_pred             EEeC------CCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC-------------------------
Confidence            9986      566666667778999999999999999999999999999887432                         


Q ss_pred             ceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        477 EAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       477 ~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                                          .+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       352 --------------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          352 --------------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             --------------------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             --------------------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence                                124999999999999999999999999999999886

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-41  Score=330.07  Aligned_cols=357  Identities=13%  Similarity=0.102  Sum_probs=229.8

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      +.++..|.++.|.+|+++.|.|.+.+.|.+.|.|++++..+.....+. ........|.|.+++.+|+|.|+|.|.|..|
T Consensus        49 ~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g  127 (423)
T 3qs7_E           49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD-LQNRGVVSMVILKMTETQAGEYLLFIQSEAT  127 (423)
T ss_dssp             -------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--C
T ss_pred             CcceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceec-cccceEEEEEEeecCcccCEEEEEEEEcCCC
Confidence            345666779999999999999999999999999999998876533221 1112235799999999999999999999999


Q ss_pred             eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEE
Q psy16852         87 VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS  166 (579)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (579)
                      .....+.|.|...      |.+ ....+..+..|+.+.|.|.+.|.|.|.|.|++++..+...... ..    .+  .+.
T Consensus       128 ~~~~~~~l~V~~~------p~~-~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~-~~----~~--~~~  193 (423)
T 3qs7_E          128 NYTILFTVSIRNT------LLY-TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE-SP----AV--VKK  193 (423)
T ss_dssp             EEEEEEEEEEC------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC------------------C--EEE
T ss_pred             cEEEEEEEEEecC------ccc-cccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccc-cc----cc--ccc
Confidence            8887788887632      222 1122334556888899999999999999999988754321100 00    00  000


Q ss_pred             EC-cCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCCeEE
Q psy16852        167 IS-EATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVK  244 (579)
Q Consensus       167 i~-~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~  244 (579)
                      .. .+...|+|.|+|.|.|..|.... ..+.+.+         ..+|.+  ++....+.+|+.+.|.|.+.+ .|.+.+.
T Consensus       194 ~~~~l~~~d~G~Y~C~A~N~~G~~~~-~~~~l~V---------~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~  261 (423)
T 3qs7_E          194 EEKVLHELFGTDIRCCARNELGRECT-RLFTIDL---------NQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLT  261 (423)
T ss_dssp             CCSEECCCCSSCEEEEEECSSCEEEE-ECEEEES---------SSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEE
T ss_pred             cceEEecccCeEEEEEEEcCCCCcce-eeEEEEE---------ecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEE
Confidence            00 11578999999999999887644 2233321         122222  233567889999999999998 6778999


Q ss_pred             EEECCEEeccCce----EE-----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeecc
Q psy16852        245 WFKNGKEIVSKDI----ET-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESH  315 (579)
Q Consensus       245 W~~~~~~i~~~~~----~~-----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~  315 (579)
                      |+++|..+.....    ..     ......|.|.++..+|+|.|+|.|.|.   ...++.|.|.  ..+.+.+.....  
T Consensus       262 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~--~~p~i~~~~~~~--  334 (423)
T 3qs7_E          262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIV--EKGFINATNSSE--  334 (423)
T ss_dssp             EEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEE--SSCEEEEC---C--
T ss_pred             EEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEE--eCCcceEcCCCc--
Confidence            9999987755321    11     122357999999999999999999887   3444444444  333333221100  


Q ss_pred             ccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEE
Q psy16852        316 PTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAAT  395 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  395 (579)
                      ...........+.|.+.|.|.|.++|+++|..+.......    .+. ..+.+.....+|+|.|+|.|.|..|....++.
T Consensus       335 ~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~-~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~  409 (423)
T 3qs7_E          335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNG-YSISKFCNHKHQPGEYIFHAENDDAQFTKMFT  409 (423)
T ss_dssp             EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSS-SEEEEECCCTTCCSCEEEEEEETTEEEEEEEE
T ss_pred             cEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc----cCC-cEEEEEecccccCEEEEEEEEcCCceEEEEEE
Confidence            0011112334456999999999999999999986543100    001 12222455678999999999999999999999


Q ss_pred             EEEEecc
Q psy16852        396 LAVEEKE  402 (579)
Q Consensus       396 l~v~~~~  402 (579)
                      |.|...+
T Consensus       410 L~v~~~p  416 (423)
T 3qs7_E          410 LNIRSGT  416 (423)
T ss_dssp             EC-----
T ss_pred             EEEecCC
Confidence            9998754

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=3.4e-41  Score=328.56  Aligned_cols=358  Identities=22%  Similarity=0.313  Sum_probs=254.6

Q ss_pred             CCccccccCc-eeeeCCCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEeCCEEEEEEcCCCCCC------CEEE
Q psy16852          6 APRFIEKIQP-VVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKED------IGVY   77 (579)
Q Consensus         6 ~p~~~~~p~~-~~v~~G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d------~G~Y   77 (579)
                      +|.|+..|.+ +.+.+|+.++|.|.+.|.|.+.|+|+| +|..+..........  ...+|.|.+++.+|      +|.|
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~--~~~~L~i~~~~~~d~~~~~d~G~Y   80 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS--SDGKLVFPPFRAEDYRQEVHAQVY   80 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEEC--STTEEEECCCCGGGCCHHHHEEEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEc--CCceEEecccChhhccccccCceE
Confidence            7899998887 668899999999999999999999999 888876544332222  23579999999987      9999


Q ss_pred             EEEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC---CeEEEEECCEEccCCC---
Q psy16852         78 TCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT---PSICWYRGKEEILPDN---  150 (579)
Q Consensus        78 ~C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~~~~---  150 (579)
                      +|.|.|..|... ..+.+.+..      +|.+...+....+.+|+.+.|.|.+.+.+.   +.+.|++++..+....   
T Consensus        81 ~C~a~n~~g~~~s~~~~v~v~~------~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~  154 (388)
T 2v5m_A           81 ACLARNQFGSIISRDVHVRAVV------AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEY  154 (388)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC------CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCB
T ss_pred             EEEEEccCCeEEecceEEEEcc------ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCC
Confidence            999999988643 455666643      344445556678899999999999977653   7999999987653211   


Q ss_pred             CceEEEcCCCCeEEEEECcCCCCCC-eEEEEEEEcCCceeEE-E---EEEEEeeccccCCCCccCCCeE-eccCCceeeC
Q psy16852        151 GHTMEFNPTTGECVLSISEATPQDE-AVYSVKAVNTFGRAEC-R---ANLVLRKATTIDKPRVLEAPTI-VRPLQALLVP  224 (579)
Q Consensus       151 ~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~~~~p~~-~~~~~~~~~~  224 (579)
                      ..+.....   .+.|.|.+++.+|+ |.|+|.+.+..+.... .   ..+.+.....      ...|.+ ........+.
T Consensus       155 ~~~~~~~~---~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~------~~~p~~~~~~~~~~~v~  225 (388)
T 2v5m_A          155 DGKYLVLP---SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS------SSAPRTPALVQKPLELM  225 (388)
T ss_dssp             TTTEEECT---TSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCS------CEEEECCSSCCCCEEEE
T ss_pred             CCcEEEcc---CCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCc------CCCCcCccccCCceEEe
Confidence            11222221   23699999999999 9999999987643322 1   1233321100      000111 0112234577


Q ss_pred             CCCeEEEEEEEEccCCCeEEEEECCEEec------cCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        225 KDSTVTLEAEYTGTPTPEVKWFKNGKEIV------SKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       225 ~g~~~~l~C~~~~~p~~~v~W~~~~~~i~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                      +|+.+.|.|.+.+.|.+.+.|++++..+.      ... ........|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus       226 ~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  304 (388)
T 2v5m_A          226 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLND-RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV  304 (388)
T ss_dssp             TTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSS-SEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccC-ceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEE
Confidence            89999999999999999999999753221      111 11112347999999999999999999999998777776666


Q ss_pred             EeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEE
Q psy16852        299 TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGL  378 (579)
Q Consensus       299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  378 (579)
                      ...+  .+.+....    ..........+.|.+.|.|.+.+.|+++|..+....           ..|.|.++..+|+|.
T Consensus       305 ~~~p--~~~~~~~~----~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~-----------~~L~i~~v~~~d~G~  367 (388)
T 2v5m_A          305 TAPL--SAKIDPPT----QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-----------SVLRIESVKKEDKGM  367 (388)
T ss_dssp             EEEE--EEEEESSE----EEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCS-----------SEEEESSCCGGGCEE
T ss_pred             eCCC--ccccCCCc----EEecCCCCEEEEEEeccccCCeEEEEECCEECccCC-----------CEEEEecCChhhCEE
Confidence            5332  22221110    001111223456899999999999999999886532           279999999999999


Q ss_pred             EEEEEEcCceeEEEEEEEEE
Q psy16852        379 YSCTAVNPVGEAVAAATLAV  398 (579)
Q Consensus       379 Y~C~a~n~~g~~~~~~~l~v  398 (579)
                      |+|.|.|..|....++.|.|
T Consensus       368 Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          368 YQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEEcCCCcEEEEEEEEe
Confidence            99999999999999888876

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=1e-38  Score=296.69  Aligned_cols=277  Identities=29%  Similarity=0.493  Sum_probs=236.8

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .+.||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+....++..........|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   81 (284)
T 2rik_A            2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS   81 (284)
T ss_dssp             CCCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CcCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEE
Confidence            36799999999999999999999999999988889999999999988888888888888999999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEecccCCCCCceecC-CCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852         83 NIGGVATCSANLIVLEKEESGEAPKFTKP-LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG  161 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  161 (579)
                      |..|.....+.+.|..      +|.+... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+...........  .+
T Consensus        82 n~~g~~~~~~~l~V~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--~~  153 (284)
T 2rik_A           82 NVAGKDSCSAQLGVQE------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV--ES  153 (284)
T ss_dssp             ETTEEEEEEEEEEEEC------CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEE--TT
T ss_pred             ECCceEEEEEEEEccC------CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEc--CC
Confidence            9999888888888875      3444433 3345688999999999999999999999999999877665554433  34


Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP  241 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  241 (579)
                      ...|.|.+++.+|+|.|+|.+.|..|.......+.+.           .+|.+...+....+.+|+.+.|.|.+.+.|.+
T Consensus       154 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~  222 (284)
T 2rik_A          154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-----------EPPVFRKKPHPVETLKGADVHLECELQGTPPF  222 (284)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE-----------CCCBCCSCCCCEEECTTCCEEEEEECBSSSCC
T ss_pred             EEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEe-----------cCCcceeCCCcceecCCCeEEEEEEEEecCCC
Confidence            6789999999999999999999999887777777665           56666666667778899999999999999999


Q ss_pred             eEEEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        242 EVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       242 ~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                      .+.|++++..+....   .........|.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus       223 ~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  282 (284)
T 2rik_A          223 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL  282 (284)
T ss_dssp             EEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEE
Confidence            999999999987655   233445578999999999999999999999999887777665

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.6e-40  Score=330.33  Aligned_cols=369  Identities=14%  Similarity=0.113  Sum_probs=253.1

Q ss_pred             CCCceEEccCCcEEEEEEEEeecCCeE-----EEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852        111 PLKPVIAEAQSPATLKATVTGRPTPSI-----CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~p~~~i-----~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  185 (579)
                      .+....+.+|+.++|.|.+.+ |.+.+     .|++++..+..           .....|.|.+++. |+| |+|.+.+.
T Consensus         5 ~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~-----------~~~~~l~i~~v~~-d~g-Y~C~a~~~   70 (450)
T 1z7z_I            5 SPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG-----------NNRKVYELSNVQE-DSQ-PMCYSNCP   70 (450)
T ss_dssp             ESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST-----------TTEEEEEEEEECS-CBC-CEEEEEET
T ss_pred             CCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC-----------CCceEEEEEeccc-CCe-eEEEEeCC
Confidence            346677889999999999998 88888     89987654321           1234788999987 999 99999876


Q ss_pred             CceeEEEEEEEEeeccccCCCCccCCCeEe-ccCCceeeCCCCeEEEEEEEEccCCC---eEEEEECCEEeccCceEEeC
Q psy16852        186 FGRAECRANLVLRKATTIDKPRVLEAPTIV-RPLQALLVPKDSTVTLEAEYTGTPTP---EVKWFKNGKEIVSKDIETKD  261 (579)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~~~~i~~~~~~~~~  261 (579)
                      .+.......+.+.           .+|.+. ..+....+.+|+.+.|.|.+.+.|++   .+.|++++..+.........
T Consensus        71 ~~~~~~~~~l~V~-----------~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~  139 (450)
T 1z7z_I           71 DGQSTAKTFLTVY-----------WTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEP  139 (450)
T ss_dssp             TEEEEEECEEEEE-----------BCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTT
T ss_pred             CCcceeEEEEEEE-----------eCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccc
Confidence            6655555666654           234333 44555678899999999999998887   89999999988654322233


Q ss_pred             CeEEEEEcccCCCCCeEEEEEEEcCCeeeE--------EEEEEEEEec--cceeeeeeeeeeccccCceeeeecCeeEEE
Q psy16852        262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEAR--------TSGSVTITVA--EAETVMMDVRVESHPTASFQWFIHSEPVVV  331 (579)
Q Consensus       262 ~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~--------~~~~~~v~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  331 (579)
                      ....|.|.++..+|+|.|+|.|.|..|...        ....+.|...  ..+.+...       ..........+.|.+
T Consensus       140 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~-------~~v~~G~~v~l~C~~  212 (450)
T 1z7z_I          140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP-------RVLEVDTQGTVVCSL  212 (450)
T ss_dssp             EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC-------SEEETTSEEEEEEEE
T ss_pred             cceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc-------eeEEeCCcEEEEEEe
Confidence            356899999999999999999999866422        1122222211  00111000       111122334456888


Q ss_pred             eee-C--CCeEEEEECCEEccCCCeEEEEECCCCe-EEEEEcccCCCCCE--EEEEEEEcCceeEEEEEEEEEEecccCC
Q psy16852        332 TGK-P--TPLVTWSHDGTPMKEGKEVTIYQDTDGL-CKLAISEVFPENAG--LYSCTAVNPVGEAVAAATLAVEEKEESG  405 (579)
Q Consensus       332 ~g~-p--~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G--~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  405 (579)
                      .|. |  .+.+.|++++..+..  ....  ..+.. ..+.+ ++..+|+|  .|+|.|.|..|.......|.|...+   
T Consensus       213 ~g~~P~~~~~~~W~~~~~~~~~--~~~~--~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~---  284 (450)
T 1z7z_I          213 DGLFPVSEAQVHLALGDQRLNP--TVTY--GNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP---  284 (450)
T ss_dssp             ESCTTGGGCEEEEEETTEECCC--EEEE--ETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC---
T ss_pred             eCCCCCCceEEEEeCCCEeCCc--eEEe--cCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC---
Confidence            888 7  689999999998876  2222  22211 12222 67889999  9999999999999889999998753   


Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                       +|.+...  ...+.+|+.++|.|.+.  |.|.+.|  +|..+...                                  
T Consensus       285 -~p~i~~~--~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~----------------------------------  323 (450)
T 1z7z_I          285 -APNVILT--KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL----------------------------------  323 (450)
T ss_dssp             -CCEEEES--CSEEETTCEEEEEEEC------------------------------------------------------
T ss_pred             -CCeEecC--CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCC----------------------------------
Confidence             4666533  45789999999999997  8889999  66665211                                  


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCe-e---EEEEEEEEEeeCCcccccccCCccccCC--CceEEecC
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG-S---VTCTATLSLLPESEVTDVMESPRFIKTP--ETAKVMDG  559 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~---~~~~~~l~v~~~~~~~~v~~~p~~~~~~--~~~~~~~g  559 (579)
                               +....|.|..+..+|+|.|+|.|.|..| .   ...++.|.|         ..+|.+...+  ....+..|
T Consensus       324 ---------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V---------~~~P~~~~~~~p~~~~~~~g  385 (450)
T 1z7z_I          324 ---------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV---------LYGPRLDERDCPGNWTWPEN  385 (450)
T ss_dssp             ---------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEE---------EEEEECCSTTSCSEEEEETT
T ss_pred             ---------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEE---------ecCCceeeccCCCceeEcCC
Confidence                     1122499999999999999999997665 3   345666665         4667766553  67789999


Q ss_pred             CcEEEEEEeccceeecccc
Q psy16852        560 QSVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       560 ~~~~l~C~~~~~~~~~~~~  578 (579)
                      +.++|.|.+.++|++.|.|
T Consensus       386 ~~~~l~C~~~g~P~p~i~W  404 (450)
T 1z7z_I          386 SQQTPMCQAWGNPLPELKC  404 (450)
T ss_dssp             CEECCCCCCEEESCCEEEE
T ss_pred             CeEEEEEecccCCCCcEEE
Confidence            9999999999999999887

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=1.9e-39  Score=321.55  Aligned_cols=396  Identities=15%  Similarity=0.185  Sum_probs=257.1

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCC----CeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPL----PTMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINP   69 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~   69 (579)
                      .|...|.++.+.+|++++|.|.+.+.+.    +.+.|||++  ..+            ....++.....+....|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPV   82 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCC
Confidence            4666789999999999999999987765    389999963  221            1235666666667789999999


Q ss_pred             CCCCCEEEEEEEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEEECCEEc
Q psy16852         70 TKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEI  146 (579)
Q Consensus        70 ~~~d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~  146 (579)
                      +.+|+|.|+|.|.|..+.. ...+.+.|....   .+|.+..........+|+.+.|.|.+.+ .|.+ .|.|++++..+
T Consensus        83 ~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~---~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~  159 (438)
T 1qgc_4           83 EADDVATYYCQQSNEVPLTFGAGTKLDLKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  159 (438)
T ss_dssp             CGGGCEEEEEEECSSTTCCBCCCEEEEECCCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             cCcCCeeEEEEEecCCCccccCceeEEecCCC---CCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEc
Confidence            9999999999999876532 334566664321   2444443222223346889999999977 5666 99999999887


Q ss_pred             cCCCCceEEEcC-CCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCce
Q psy16852        147 LPDNGHTMEFNP-TTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQAL  221 (579)
Q Consensus       147 ~~~~~~~~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~  221 (579)
                      ............ .++    .+.|.|.++..+|+|.|+|.|.|..+.......+...           .++.....+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  228 (438)
T 1qgc_4          160 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN-----------ECEVMLVESGGG  228 (438)
T ss_dssp             CTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETT-----------C-CCEEEEECCE
T ss_pred             CCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccc-----------cceeEEecCCce
Confidence            654111111111 111    3579999999999999999999988765333222211           112222234456


Q ss_pred             eeCCCCeEEEEEEEEccC--CCeEEEEEC--CEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEE
Q psy16852        222 LVPKDSTVTLEAEYTGTP--TPEVKWFKN--GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT  297 (579)
Q Consensus       222 ~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~  297 (579)
                      .+.+|+.+.|.|.+.+.|  .+.+.|+++  ++.+.            +.+ .....+            +..       
T Consensus       229 ~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~------------~~~-~~~~~~------------~~~-------  276 (438)
T 1qgc_4          229 LVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLE------------WVA-TISSGG------------TYT-------  276 (438)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEE------------EEE-EECTTS------------CCE-------
T ss_pred             EEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcE------------EEE-EEeecC------------Cce-------
Confidence            688999999999999988  569999986  32211            000 000000            000       


Q ss_pred             EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEE-CCCCeEEEEEcccCCCCC
Q psy16852        298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQ-DTDGLCKLAISEVFPENA  376 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~  376 (579)
                               ..    ..                                  ....++.+.. ...+...|.|.++..+|+
T Consensus       277 ---------~~----~~----------------------------------~~~~r~~~~~~~~~~~~~L~I~~v~~~D~  309 (438)
T 1qgc_4          277 ---------YY----PD----------------------------------SVKGRFTISRDNAKNTLYLQMSSLRSADT  309 (438)
T ss_dssp             ---------EC----CG----------------------------------GGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ---------ec----Cc----------------------------------ccCCcEEEEeecCCCeEEEEECCCChhhC
Confidence                     00    00                                  0000111111 123345899999999999


Q ss_pred             EEEEEEEEcCce-----eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEee-CCC-eEEEeeCCEEcC
Q psy16852        377 GLYSCTAVNPVG-----EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKEEIL  449 (579)
Q Consensus       377 G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~  449 (579)
                      |.|+|.|.|..+     .......+.|...  ...+|.+........+.+|+.++|.|.+.|. |.| .|.|+++|..+.
T Consensus       310 G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~  387 (438)
T 1qgc_4          310 AMYYCVRREDGGDEGFAYWGQGTVVTVSAA--KTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSG  387 (438)
T ss_dssp             CEEEEEECCSSSCCCCCSBCCCEEEEECSS--CCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSS
T ss_pred             EEEEEEEEccCCCccceeeCCCEEEEEecC--CCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCc
Confidence            999999998433     2223456666542  2235555433333456789999999999997 888 999999987763


Q ss_pred             CCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEE
Q psy16852        450 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTAT  529 (579)
Q Consensus       450 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  529 (579)
                      ......                +.  +.|.|.+.              +.|+|.++..+| |.|+|.|.|..|.......
T Consensus       388 ~~~~~~----------------~~--~~g~~~~~--------------s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~  434 (438)
T 1qgc_4          388 VHTFPA----------------VL--QSDLYTLS--------------SSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK  434 (438)
T ss_dssp             EEECCC----------------EE--ETTEEEEE--------------EEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEE
T ss_pred             eeecCc----------------cc--cCCcEEEE--------------EEEEEehhhcCC-ceEEEEEEeCCCCcceeee
Confidence            211000                00  12455433              349999999999 9999999999998877666


Q ss_pred             EE
Q psy16852        530 LS  531 (579)
Q Consensus       530 l~  531 (579)
                      |.
T Consensus       435 i~  436 (438)
T 1qgc_4          435 IV  436 (438)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=8.4e-36  Score=277.07  Aligned_cols=278  Identities=22%  Similarity=0.345  Sum_probs=222.7

Q ss_pred             cCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEc
Q psy16852        209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVN  285 (579)
Q Consensus       209 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n  285 (579)
                      +.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....   .........|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            367888888888889999999999999999989999999999987654   23345678999999999999999999999


Q ss_pred             CCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEE
Q psy16852        286 EAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCK  365 (579)
Q Consensus       286 ~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  365 (579)
                      ..|.......+.|...+.....+.-...     ........+.|.+.|.|.+.+.|++++..+........... .....
T Consensus        83 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~-----v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~  156 (284)
T 2rik_A           83 VAGKDSCSAQLGVQEPPRFIKKLEPSRI-----VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV-ESVAV  156 (284)
T ss_dssp             TTEEEEEEEEEEEECCCEEEECCCSEEE-----EETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEE-TTEEE
T ss_pred             CCceEEEEEEEEccCCCcccccCCCceE-----ecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEc-CCEEE
Confidence            9988776766666543321111110000     11112233568899999999999999999987766554332 34568


Q ss_pred             EEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCC
Q psy16852        366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK  445 (579)
Q Consensus       366 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~  445 (579)
                      |.|.++..+|+|.|+|.|.|..|.....+.|.|..      +|.+...+....+..|+.++|.|.+.|.|.|.+.|++++
T Consensus       157 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~  230 (284)
T 2rik_A          157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK  230 (284)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC------CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETT
T ss_pred             EEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec------CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECC
Confidence            99999999999999999999999999999999986      677776667778899999999999999999999999999


Q ss_pred             EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE
Q psy16852        446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT  525 (579)
Q Consensus       446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  525 (579)
                      ..+..+.++.+..                                   ++..+.|.|.++..+|+|.|+|.|.|..|...
T Consensus       231 ~~~~~~~~~~~~~-----------------------------------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  275 (284)
T 2rik_A          231 RELRSGKKYKIMS-----------------------------------ENFLTSIHILNVDSADIGEYQCKASNDVGSYT  275 (284)
T ss_dssp             EEECBTTTEEEEE-----------------------------------ETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EECcCCCCEEEEE-----------------------------------cCCEEEEEEcCCCcccCEEEEEEEEeCCCcee
Confidence            9987666554422                                   34456699999999999999999999999999


Q ss_pred             EEEEEEEe
Q psy16852        526 CTATLSLL  533 (579)
Q Consensus       526 ~~~~l~v~  533 (579)
                      .++.|.|+
T Consensus       276 ~~~~l~V~  283 (284)
T 2rik_A          276 CVGSITLK  283 (284)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEc
Confidence            99999874

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=1.6e-38  Score=306.11  Aligned_cols=318  Identities=14%  Similarity=0.159  Sum_probs=228.8

Q ss_pred             eEEccCCcEEEEEEEEeecCCeEEEEECCEEccC------------CCCceEEEcC---CCCeEEEEECcCCCCCCeEEE
Q psy16852        115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILP------------DNGHTMEFNP---TTGECVLSISEATPQDEAVYS  179 (579)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~------------~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~  179 (579)
                      +.+.+|+.++|.|.+.+.|.+.|.|++++..+..            ....++....   ..+...|.|.+++.+|+|.|+
T Consensus         4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   83 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (363)
T ss_dssp             EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence            5678999999999998889999999999753211            1111222111   224567999999999999999


Q ss_pred             EEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEE
Q psy16852        180 VKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET  259 (579)
Q Consensus       180 C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~  259 (579)
                      |.+.+..+    ...+.|..              +...+ ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.      
T Consensus        84 C~~~n~~~----~~~l~V~~--------------~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~------  138 (363)
T 1wio_A           84 CEVEDQKE----EVQLLVFG--------------LTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------  138 (363)
T ss_dssp             EEETTEEE----EEEEEEEE--------------EEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEE------
T ss_pred             EEEEECCC----cEEEEEEe--------------CCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc------
Confidence            99987643    33444431              01111 1246789999999999999999999999876542      


Q ss_pred             eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEee-----e
Q psy16852        260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTG-----K  334 (579)
Q Consensus       260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-----~  334 (579)
                       .....|.|.++..+|+|.|+|.|.|..+.......+.|...+...  -...+..+.       ...+.|.+.|     .
T Consensus       139 -~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~G~-------~v~l~C~~~~~~~~~~  208 (363)
T 1wio_A          139 -QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS--SIVYKKEGE-------QVEFSFPLAFTVEKLT  208 (363)
T ss_dssp             -EESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE--EEEEEETBC-------CEEEECCCCCCCCSSC
T ss_pred             -ccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC--CceEEecCC-------EEEEEEEEecccccCC
Confidence             233579999999999999999999987766665565555222211  001111111       1223455555     7


Q ss_pred             CCCeEEEEECCEEccC--------CCeEEEEE---------CCCCeEEEEEcccCCCCCEEEEEEEEcC--ceeEEEEEE
Q psy16852        335 PTPLVTWSHDGTPMKE--------GKEVTIYQ---------DTDGLCKLAISEVFPENAGLYSCTAVNP--VGEAVAAAT  395 (579)
Q Consensus       335 p~~~i~W~~~~~~~~~--------~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~  395 (579)
                      |.+.+.|+++|..+..        +..+.+..         ...+...|.|.++..+|+|.|+|.|.|.  .|.....+.
T Consensus       209 P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~  288 (363)
T 1wio_A          209 GSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVN  288 (363)
T ss_dssp             EEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEE
T ss_pred             CceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEe
Confidence            8899999999988766        34443322         1233458999999999999999999999  998888888


Q ss_pred             EEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCe--EEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEcccc
Q psy16852        396 LAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS--ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT  473 (579)
Q Consensus       396 l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~  473 (579)
                      |.|...                   .|+.++|.|.+.|.|+|.  +.|++++..+..+                      
T Consensus       289 l~V~~v-------------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~----------------------  327 (363)
T 1wio_A          289 LVVMRA-------------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS----------------------  327 (363)
T ss_dssp             EEEEEE-------------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSEE----------------------
T ss_pred             EEEEEe-------------------cCCCeeEEEEEccccCCCccEEEEeCCCceeee----------------------
Confidence            888631                   188999999999999997  9999998766321                      


Q ss_pred             CCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        474 PQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       474 ~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                              ..|.|.++..+|+|.|+|.|.|. |....+..|+|.
T Consensus       328 ------------------------~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~  362 (363)
T 1wio_A          328 ------------------------KREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL  362 (363)
T ss_dssp             ------------------------ESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred             ------------------------eeeeeeeeccccceeEEEEEecC-CeEEEecceEec
Confidence                                    12677889999999999999964 677777777764

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=2.9e-39  Score=311.25  Aligned_cols=312  Identities=15%  Similarity=0.191  Sum_probs=228.0

Q ss_pred             ceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC--------------CCCEEEEE---eCCEEEEEEcCCCCCCCEEE
Q psy16852         15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA--------------TEHYLITT---VESVSTLEIINPTKEDIGVY   77 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~--------------~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y   77 (579)
                      .+.+.+|++++|.|.+.+.|.+.+.|+|++..+..              ..++....   ..+...|.|.+++.+|+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            46789999999999998888889999999864211              11221111   22456799999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEc
Q psy16852         78 TCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN  157 (579)
Q Consensus        78 ~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  157 (579)
                      +|.+.|..    ..+.|.|....         ..+ ...+.+|+.++|.|.+.+.|.+.+.|++++..+.       .  
T Consensus        83 ~C~~~n~~----~~~~l~V~~~~---------~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-------~--  139 (363)
T 1wio_A           83 ICEVEDQK----EEVQLLVFGLT---------ANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------Q--  139 (363)
T ss_dssp             EEEETTEE----EEEEEEEEEEE---------ESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEE-------E--
T ss_pred             EEEEEECC----CcEEEEEEeCC---------CCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc-------c--
Confidence            99998753    35566665321         111 1246789999999999888899999999875431       1  


Q ss_pred             CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc
Q psy16852        158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG  237 (579)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~  237 (579)
                         ....|.|.++..+|+|.|+|.+.+..+.......+.+.           .+|..   +....+.+|+.+.|.|.+.+
T Consensus       140 ---~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~-----------~~p~~---~~~~~~~~G~~v~l~C~~~~  202 (363)
T 1wio_A          140 ---GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL-----------AFQKA---SSIVYKKEGEQVEFSFPLAF  202 (363)
T ss_dssp             ---ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEE-----------CCSCS---EEEEEEETBCCEEEECCCCC
T ss_pred             ---cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEe-----------cCCCC---CCceEEecCCEEEEEEEEec
Confidence               12479999999999999999999876655544444433           22221   13456788999999998877


Q ss_pred             -----cCCCeEEEEECCEEeccC--------c-eEE------------eCCeEEEEEcccCCCCCeEEEEEEEcC--Cee
Q psy16852        238 -----TPTPEVKWFKNGKEIVSK--------D-IET------------KDNVTKLVIKQTTKKTTGKYEIRVVNE--AGE  289 (579)
Q Consensus       238 -----~p~~~v~W~~~~~~i~~~--------~-~~~------------~~~~~~l~i~~~~~~d~G~y~C~a~n~--~g~  289 (579)
                           .|.+.+.|+++|..+...        . ...            ......|.|.++..+|+|.|+|.|.|.  .|.
T Consensus       203 ~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~  282 (363)
T 1wio_A          203 TVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK  282 (363)
T ss_dssp             CCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCC
T ss_pred             ccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCe
Confidence                 678899999999877652        1 111            122348999999999999999999999  888


Q ss_pred             eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCe--EEEEECCEEccCCCeEEEEECCCCeEEEE
Q psy16852        290 ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPL--VTWSHDGTPMKEGKEVTIYQDTDGLCKLA  367 (579)
Q Consensus       290 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~l~  367 (579)
                      ......+.|....+..+.|                   .|.+.|.|++.  +.|++++..+..+            ..|.
T Consensus       283 ~~~~~~l~V~~v~g~~~~l-------------------~C~~~g~p~p~~~i~W~~~~~~~~~~------------~~l~  331 (363)
T 1wio_A          283 LHQEVNLVVMRATQLQKNL-------------------TCEVWGPTSPKLMLSLKLENKEAKVS------------KREK  331 (363)
T ss_dssp             EEEEEEEEEEEECCCSSSE-------------------EEEEESSCCTTCCEEEECSSSSCSEE------------ESSS
T ss_pred             EEEEEeEEEEEecCCCeeE-------------------EEEEccccCCCccEEEEeCCCceeee------------eeee
Confidence            7777777776333333333                   45677888877  9999999877632            1477


Q ss_pred             EcccCCCCCEEEEEEEEcCceeEEEEEEEEE
Q psy16852        368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAV  398 (579)
Q Consensus       368 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  398 (579)
                      |.++..+|+|.|+|.|.|. |....+..+.|
T Consensus       332 i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          332 AVWVLNPEAGMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             EEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred             eeeeccccceeEEEEEecC-CeEEEecceEe
Confidence            8899999999999999975 44555555555

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=284.46  Aligned_cols=281  Identities=23%  Similarity=0.375  Sum_probs=215.0

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEE-eC-CEEEEEEcCCCC-CCCEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT-VE-SVSTLEIINPTK-EDIGVYTCK   80 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~-~~-~~~~L~i~~~~~-~d~G~Y~C~   80 (579)
                      ..||.|...|.++.+.+|+.++|.|.+.|.|.+.|.|+++|..+... ++.... .. ....|.|.+++. +|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            46899999999999999999999999999999999999999988544 444333 22 358899999998 999999999


Q ss_pred             EEcCCeeeEEEEEEEEEecccCC-CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCC-ceEEEcC
Q psy16852         81 ATNIGGVATCSANLIVLEKEESG-EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG-HTMEFNP  158 (579)
Q Consensus        81 ~~~~~g~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~  158 (579)
                      +.|..|.....+.|.|...+..+ ..|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ..+....
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~  162 (304)
T 2yd9_A           83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLR  162 (304)
T ss_dssp             EECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECT
T ss_pred             EECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCC
Confidence            99999988788888888664321 235666667778889999999999999999999999999998765422 2232221


Q ss_pred             CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc
Q psy16852        159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG  237 (579)
Q Consensus       159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~  237 (579)
                       .  ..|.|.+++.+|+|.|+|.+.|..|..... ..+.+..        ...+|.+...+....+.+|+.+.|.|.+.|
T Consensus       163 -~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~--------~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g  231 (304)
T 2yd9_A          163 -S--GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV--------QNVAPRFSILPMSHEIMPGGNVNITCVAVG  231 (304)
T ss_dssp             -T--SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--------CCEEEEEEECCCCBCCCTTCCEEEEEEEEE
T ss_pred             -C--eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEe--------eccCCcEEecCCceEEcCCCeEEEEEEEee
Confidence             2  379999999999999999999998866533 4444431        123566666666677889999999999999


Q ss_pred             cCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        238 TPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       238 ~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      .|.+.+.|+++|..+..... .......|.+.++  +|+|.|+|.|.|..|....++.|.|.
T Consensus       232 ~p~p~v~W~~~~~~l~~~~~-~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~  290 (304)
T 2yd9_A          232 SPMPYVKWMQGAEDLTPEDD-MPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVK  290 (304)
T ss_dssp             ESCCEEEEEETTEECSCSSS-CCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--
T ss_pred             eCCCEEEEEECCEECCCccc-ccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            99999999999999876542 2234456777766  69999999999999998877777665

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=5.1e-35  Score=272.91  Aligned_cols=276  Identities=19%  Similarity=0.288  Sum_probs=215.2

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEE-CCEEecCC-CCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQK-DGTELHAT-EHYLITT-VESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~-~g~~~~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ||.|...|.+..+.+|+.++|.|.+.+.+ .+.+.|++ +|..+... .++.... ......|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            78899999999999999999999998876 57999999 88877643 3444332 346789999999999999999999


Q ss_pred             EcCCe-eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852         82 TNIGG-VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT  160 (579)
Q Consensus        82 ~~~~g-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  160 (579)
                      .|..| .....+.+.|..      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+..... 
T Consensus        82 ~n~~g~~~~~~~~l~v~~------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-  154 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIFQ------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-  154 (291)
T ss_dssp             ECTTSCEEEEEEEEEEEC------CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTT-
T ss_pred             EcCCCCeeEEEEEEEeec------cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccC-
Confidence            99875 344566666653      4456666677888999999999999999999999999998876554444443322 


Q ss_pred             CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccC--CceeeCCCCeEEEEEEEEcc
Q psy16852        161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPL--QALLVPKDSTVTLEAEYTGT  238 (579)
Q Consensus       161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~  238 (579)
                        ..|.|.++..+|+|.|+|.+.|..+.......+.+..         ..+|.+....  ....+.+|+.+.|.|.+.+.
T Consensus       155 --~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v---------~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~  223 (291)
T 1qz1_A          155 --NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV---------NVPPTVQARQSIVNATANLGQSVTLVCDADGF  223 (291)
T ss_dssp             --SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEE---------EEEEEEEESCSEEEEETTSCCCEEEEEEEEEE
T ss_pred             --CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEE---------ecCCcccccccccccccccCceEEEEEEEEEe
Confidence              3699999999999999999998764433333333321         1344444332  24467889999999999999


Q ss_pred             CCCeEEEEECCEEeccCc-----eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        239 PTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       239 p~~~v~W~~~~~~i~~~~-----~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      |.+.+.|+++|..+....     .........|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       224 p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          224 PEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             SCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            999999999999887653     3334455789999999999999999999999998877777764

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=275.43  Aligned_cols=278  Identities=22%  Similarity=0.387  Sum_probs=216.3

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE-CCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK-DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      .+|.|...|.++.+.+|+.++|.|.+.+.|. .+.|++ +|..+....++.....+....|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            4788999999999999999999999998775 899999 78888777788877777788999999999999999999999


Q ss_pred             CCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852         84 IGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE  162 (579)
Q Consensus        84 ~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  162 (579)
                      ..|.. ...+.+.|..      ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............   
T Consensus        82 ~~g~~~~~~~~l~v~~------~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---  152 (291)
T 2wim_A           82 AKGQTQEATVVLEIYQ------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN---  152 (291)
T ss_dssp             SSSCEEEEEEEEEEEC------CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTT---
T ss_pred             ccCceEEEEEEEEecC------CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccC---
Confidence            88765 3456666653      3445555667788999999999999999999999999998876544444443322   


Q ss_pred             EEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCC--ceeeCCCCeEEEEEEEEccCC
Q psy16852        163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ--ALLVPKDSTVTLEAEYTGTPT  240 (579)
Q Consensus       163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~  240 (579)
                      ..|.|.++..+|+|.|+|.+.+..+.......+.+..         ..+|.+.....  ...+.+|+.+.|.|.+.+.|.
T Consensus       153 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v---------~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~  223 (291)
T 2wim_A          153 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV---------NVPPAISMPQKSFNATAERGEEMTFSCRASGSPE  223 (291)
T ss_dssp             SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEE---------EBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSC
T ss_pred             CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEe---------ccCCccccCcccccceecCCCeEEEEEEeecCCC
Confidence            3599999999999999999998875443333333321         13444433332  345778999999999999999


Q ss_pred             CeEEEEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852        241 PEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA  301 (579)
Q Consensus       241 ~~v~W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~  301 (579)
                      +.+.|+++|..+.... .........|.|.++..+|+|.|+|.|.|..|....++.+.|...
T Consensus       224 p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  285 (291)
T 2wim_A          224 PAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ  285 (291)
T ss_dssp             CEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred             CeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence            9999999999987654 333445578999999999999999999999999988888776543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2.9e-35  Score=285.21  Aligned_cols=307  Identities=19%  Similarity=0.312  Sum_probs=209.6

Q ss_pred             CeEeccCCceee---CCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEccc-CCCCCeEEEEEEE
Q psy16852        212 PTIVRPLQALLV---PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQT-TKKTTGKYEIRVV  284 (579)
Q Consensus       212 p~~~~~~~~~~~---~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~-~~~d~G~y~C~a~  284 (579)
                      |.+...+....+   .+|+.+.|.|.+.|.|.+.+.|+++|..+....   .....  ..|.|.+. ..+|+|.|+|.|.
T Consensus         6 P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--g~l~i~~~~~~~D~G~Y~C~A~   83 (384)
T 3kld_A            6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD--GSLLINNPNKTQDAGTYQCIAT   83 (384)
T ss_dssp             EEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEET--TEEEEESCCHHHHCEEEEEEEE
T ss_pred             CEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEEC--CEEEEcCCCCcccCEEEEEEEE
Confidence            344444444433   578999999999999999999999999986542   22222  24666555 7789999999999


Q ss_pred             cCCeeeE-EEEEEEEEeccceeeee--eeeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECCEEccCCCeEEEEECC
Q psy16852        285 NEAGEAR-TSGSVTITVAEAETVMM--DVRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDGTPMKEGKEVTIYQDT  360 (579)
Q Consensus       285 n~~g~~~-~~~~~~v~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~  360 (579)
                      |..|... ....+.+...+......  ...+..+.       ...+.|.. .+.|.+.+.|++++.++....+.... ..
T Consensus        84 N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~-------~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~  155 (384)
T 3kld_A           84 NSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQ-------GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS-QE  155 (384)
T ss_dssp             ETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETC-------CEEECCCCCSEESCEEEEEEETTEECCCSSSEEEC-TT
T ss_pred             cCcccEEecceEEEEecccccccCCCCceeEEcCC-------CeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEE-cC
Confidence            9998753 23444443221110000  00111111       11123432 35677899999999987655443332 22


Q ss_pred             CCeEEEEEcccCCCCCEEEEEEEEcCceeEEE---EEEEEEEec-ccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeC
Q psy16852        361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVA---AATLAVEEK-EESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRP  435 (579)
Q Consensus       361 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~~~-~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p  435 (579)
                      .+  .|.|.++..+|+|.|+|.|.|..+....   ...+.+... .....+|.+. ..+....+.+|+.+.|.|.+.|.|
T Consensus       156 ~~--~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P  233 (384)
T 3kld_A          156 TG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP  233 (384)
T ss_dssp             TC--CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEES
T ss_pred             CC--cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecC
Confidence            22  6999999999999999999998775432   122222210 0001123332 234556788999999999999999


Q ss_pred             CCeEEEeeCCE-EcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEE
Q psy16852        436 TPSICWYRGKE-EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVT  514 (579)
Q Consensus       436 ~~~v~W~~~~~-~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  514 (579)
                      .|.+.|++++. .+....  ..                                     ....+.|.|.+++.+|+|.|+
T Consensus       234 ~p~i~W~k~~~~~~~~~~--~~-------------------------------------~~~~~~L~I~~v~~~D~G~Y~  274 (384)
T 3kld_A          234 VPTILWRRADGKPIARKA--RR-------------------------------------HKSNGILEIPNFQQEDAGSYE  274 (384)
T ss_dssp             CCEEEEEETTCCCCCTTC--EE-------------------------------------CTTSCEEEECSCCGGGCEEEE
T ss_pred             CCcEEEEeCCCccccccc--ee-------------------------------------cCCCcEEEECCCChhhCEEEE
Confidence            99999999543 442211  00                                     112345999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852        515 CRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       515 C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~  578 (579)
                      |.|.|..|.....+.|.|.         .+|.+...+....+..|++++|.|.+.++|.+.|.|
T Consensus       275 C~a~N~~G~~~~~~~l~v~---------~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W  329 (384)
T 3kld_A          275 CVAENSRGKNVAKGQLTFY---------AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW  329 (384)
T ss_dssp             EEEEETTEEEEEEEEEEEE---------EEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEE
T ss_pred             EEEEcCCCeEEEEEEEEEe---------cCCccccCCCceEecCCCCEEEEeECCccCCCeEEE
Confidence            9999999999999999875         678888888889999999999999999999999887

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=5.5e-36  Score=283.25  Aligned_cols=289  Identities=20%  Similarity=0.298  Sum_probs=214.3

Q ss_pred             CCcCCCCccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852          1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus         1 ~~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      |.++.+|.|..++ ++.+.+|+.++|.|.+.+. |.+.+.|+++|..+....++...  .+...|.|.+++.+|+|.|+|
T Consensus         2 i~~~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C   78 (317)
T 2y25_A            2 IDPFTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEV   78 (317)
T ss_dssp             CCSSSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEE
T ss_pred             CCccCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccCeEEEE
Confidence            5678899998655 6999999999999999887 67899999999999876665443  445899999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe----------ecCCeEEEEECCEEccCC
Q psy16852         80 KATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG----------RPTPSICWYRGKEEILPD  149 (579)
Q Consensus        80 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~p~~~i~W~~~~~~~~~~  149 (579)
                      .+.|..|.....+.+.|...      +.+...+....+.+|+.+.|.|.+.+          .|.+.+.|++++..+...
T Consensus        79 ~~~n~~g~~~~~~~l~v~~~------~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~  152 (317)
T 2y25_A           79 ILKDDRGKDKSRLKLVDEAF------KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS  152 (317)
T ss_dssp             EEESSSCEEEEEECCSTHHH------HHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCC
T ss_pred             EEECCCCcEEEEEEEEEecC------ccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCC
Confidence            99998887766555544321      11222222334456777777777655          688999999999988766


Q ss_pred             CCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccc---------cCCCCccCCCeEec-cCC
Q psy16852        150 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATT---------IDKPRVLEAPTIVR-PLQ  219 (579)
Q Consensus       150 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~~~p~~~~-~~~  219 (579)
                      .+.....  ..+...|.|.+++.+|+|.|+|.+.|..|....+..+.+.....         .........|.+.. .+.
T Consensus       153 ~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  230 (317)
T 2y25_A          153 DRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD  230 (317)
T ss_dssp             SSEEEEE--CSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCS
T ss_pred             CCeEEec--cCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCc
Confidence            5544443  34567899999999999999999999988777666555431000         00000112333433 344


Q ss_pred             ceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCce-EEe---CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEE
Q psy16852        220 ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDI-ETK---DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS  295 (579)
Q Consensus       220 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~-~~~---~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~  295 (579)
                      ...+.+|+.+.|.|.+.|.|.+.+.|+++|..+..... ...   .....|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus       231 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  310 (317)
T 2y25_A          231 VVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT  310 (317)
T ss_dssp             EEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEE
Confidence            56788999999999999999999999999999876542 222   34568999999999999999999999999888888


Q ss_pred             EEEEe
Q psy16852        296 VTITV  300 (579)
Q Consensus       296 ~~v~~  300 (579)
                      +.|.+
T Consensus       311 l~V~~  315 (317)
T 2y25_A          311 VSVFI  315 (317)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            77764

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=1e-34  Score=287.55  Aligned_cols=372  Identities=16%  Similarity=0.197  Sum_probs=234.4

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEec-----------------CCCCEEEEEe--CCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTELH-----------------ATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~L~i   66 (579)
                      +..|.++.+.+|++++|.|.+.+.+  .+.+.|||+  |..+.                 ...++.+...  .+..+|.|
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (444)
T 1igt_B            4 LQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQM   83 (444)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEE
Confidence            4467788999999999999998764  468999985  32210                 1245655443  34689999


Q ss_pred             cCCCCCCCEEEEEEEEcCCee---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEE
Q psy16852         67 INPTKEDIGVYTCKATNIGGV---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYR  141 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~  141 (579)
                      .+++.+|+|.|+|.+.+..+.   ....+.+.|....  ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|++
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  161 (444)
T 1igt_B           84 SRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK--TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS  161 (444)
T ss_dssp             CSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC--CBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCC--CCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEec
Confidence            999999999999999987543   2233566665321  123333322222234789999999999886 666 999999


Q ss_pred             CCEEccCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeecc-------ccCCCCccCCCe
Q psy16852        142 GKEEILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKAT-------TIDKPRVLEAPT  213 (579)
Q Consensus       142 ~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~p~  213 (579)
                      ++..+........... .....+.|.|.++..+| |.|+|.|.|..+.......+.+....       ......+..+|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~  240 (444)
T 1igt_B          162 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPS  240 (444)
T ss_dssp             GTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCE
T ss_pred             CCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCce
Confidence            8775311000001110 00012469999999999 99999999998876444433221000       000001223455


Q ss_pred             E-eccCCcee-eCCCCeEEEEEEEEccC---C-CeEEEEECCEEeccCc----eEEe----CCeEEEEEcccCCCCCeEE
Q psy16852        214 I-VRPLQALL-VPKDSTVTLEAEYTGTP---T-PEVKWFKNGKEIVSKD----IETK----DNVTKLVIKQTTKKTTGKY  279 (579)
Q Consensus       214 ~-~~~~~~~~-~~~g~~~~l~C~~~~~p---~-~~v~W~~~~~~i~~~~----~~~~----~~~~~l~i~~~~~~d~G~y  279 (579)
                      + ..++.... +.+|+.+.|.|.+.+.+   + +.+.|++++..+....    ....    ...+.|.|.++..+|+|.|
T Consensus       241 v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y  320 (444)
T 1igt_B          241 VFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF  320 (444)
T ss_dssp             EEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEE
T ss_pred             EEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcE
Confidence            4 33333333 58899999999999874   3 5999999998876432    1111    2346899999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEE--EeccceeeeeeeeeeccccCceeeeecCeeEEEeee-CCC-eEEEEECCEEccCCCeEE
Q psy16852        280 EIRVVNEAGEARTSGSVTI--TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK-PTP-LVTWSHDGTPMKEGKEVT  355 (579)
Q Consensus       280 ~C~a~n~~g~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-p~~-~i~W~~~~~~~~~~~~~~  355 (579)
                      +|.|.|..+.......+.+  .+...+.+.+...    ....+......+.|.+.|. |.+ .++|+++|..+.......
T Consensus       321 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~----~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  396 (444)
T 1igt_B          321 KCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPP----PEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTE  396 (444)
T ss_dssp             EEEEECTTCSSCEEEEEECCCCCCBCCEEEEECC----CGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECC
T ss_pred             EEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCC----ChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEcccccccc
Confidence            9999999886633333322  2233333332211    1111111124567999985 555 999999999884322222


Q ss_pred             EEECCCCe----EEEEEcccCCCCCEEEEEEEEcCce
Q psy16852        356 IYQDTDGL----CKLAISEVFPENAGLYSCTAVNPVG  388 (579)
Q Consensus       356 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g  388 (579)
                      .....+++    +.|.|.....+|.|.|+|.|.|...
T Consensus       397 ~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          397 PVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             ceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence            22233332    3567777777789999999999753

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=263.89  Aligned_cols=281  Identities=24%  Similarity=0.383  Sum_probs=194.3

Q ss_pred             CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCC-CCCeEEEEEE
Q psy16852        104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP-QDEAVYSVKA  182 (579)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~  182 (579)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.|.|++++..+... +........+....|.|.++.. +|+|.|+|.+
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a   83 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECVA   83 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence            5778888888899999999999999999999999999999887543 3333332333457899999998 9999999999


Q ss_pred             EcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEE
Q psy16852        183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IET  259 (579)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~  259 (579)
                      .|..|.......+.|......    ....|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....   ...
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~----p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~  159 (304)
T 2yd9_A           84 QNSVGEITVHAKLTVLREDQL----PSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK  159 (304)
T ss_dssp             ECSSCEECCEEEEEEECGGGC----CTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEE
T ss_pred             ECCCCeEEEEEEEEEeccccC----CCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEE
Confidence            999888666667766532110    0122666666677778899999999999999999999999998876532   111


Q ss_pred             eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeE
Q psy16852        260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLV  339 (579)
Q Consensus       260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i  339 (579)
                      ......|.|.++..+|+|.|+|.|.|..|.                                                  
T Consensus       160 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--------------------------------------------------  189 (304)
T 2yd9_A          160 QLRSGALQIESSEETDQGKYECVATNSAGV--------------------------------------------------  189 (304)
T ss_dssp             ECTTSCEEECSCCGGGCEEEEEEEEETTEE--------------------------------------------------
T ss_pred             eCCCeEEEEccCCcccCEEEEEEEEeCCCC--------------------------------------------------
Confidence            112225666666666666666666655543                                                  


Q ss_pred             EEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEE-EEEEEEecccCCCCCeeecCCCcee
Q psy16852        340 TWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTKPLKPVI  418 (579)
Q Consensus       340 ~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~~p~~~~~~~~~~  418 (579)
                                                                        .... ..+.|....   .+|.+...+....
T Consensus       190 --------------------------------------------------~~~~~~~l~v~~~~---~~P~~~~~~~~~~  216 (304)
T 2yd9_A          190 --------------------------------------------------RYSSPANLYVRVQN---VAPRFSILPMSHE  216 (304)
T ss_dssp             --------------------------------------------------EECCCEEEEEECCC---EEEEEEECCCCBC
T ss_pred             --------------------------------------------------EEeccEEEEEEeec---cCCcEEecCCceE
Confidence                                                              2211 122221100   1444444445566


Q ss_pred             eecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        419 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      +.+|+.++|.|.+.|.|.|.+.|+++|..+....+..                                       ....
T Consensus       217 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~---------------------------------------~~~~  257 (304)
T 2yd9_A          217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP---------------------------------------VGRN  257 (304)
T ss_dssp             CCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC---------------------------------------BSEE
T ss_pred             EcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc---------------------------------------CCcE
Confidence            8899999999999999999999999999886543211                                       1123


Q ss_pred             EEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        499 VLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .|.|.++  +|+|.|+|.|.|..|....++.|.|.
T Consensus       258 ~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~  290 (304)
T 2yd9_A          258 VLELTDV--KDSANYTCVAMSSLGVIEAVAQITVK  290 (304)
T ss_dssp             EEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--
T ss_pred             EEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            3666655  58999999999999999999999976

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=269.10  Aligned_cols=279  Identities=20%  Similarity=0.315  Sum_probs=213.6

Q ss_pred             cCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852        209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNE  286 (579)
Q Consensus       209 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~  286 (579)
                      ..+|.+..+. ...+.+|+.+.|.|.+.+. |.+.+.|+++|..+.... .........|.|.+++.+|+|.|+|.|.|.
T Consensus         5 ~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   83 (317)
T 2y25_A            5 FTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD   83 (317)
T ss_dssp             SSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred             cCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence            3567776544 4778999999999999887 778999999999987544 333455579999999999999999999999


Q ss_pred             CeeeEEEEEEEEE-------------eccceeeeeeeeeeccccCceeeeecCeeEEEee-eCCCeEEEEECCEEccCCC
Q psy16852        287 AGEARTSGSVTIT-------------VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTG-KPTPLVTWSHDGTPMKEGK  352 (579)
Q Consensus       287 ~g~~~~~~~~~v~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~p~~~i~W~~~~~~~~~~~  352 (579)
                      .|.......+.|.             +..+..+.+.|.....          .+.|.+.+ .|.+.+.|++++..+....
T Consensus        84 ~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~----------~l~c~~~~~~p~~~i~W~~~~~~~~~~~  153 (317)
T 2y25_A           84 RGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGI----------QLYSFVTYYVEDLKVNWSHNGSAIRYSD  153 (317)
T ss_dssp             SCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEE----------EEEEEBSSCCSSCEEEEEESSSBCCCCS
T ss_pred             CCcEEEEEEEEEecCccccccCCceecccCCCeEEEeecccc----------EEEEEeccCCCCcEEEEEECCEECCCCC
Confidence            8876655444433             2356667777764321          23466665 5889999999999998877


Q ss_pred             eEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEec--------------ccCCCCCeeec-CCCce
Q psy16852        353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK--------------EESGEAPKFTK-PLKPV  417 (579)
Q Consensus       353 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~--------------~~~~~~p~~~~-~~~~~  417 (579)
                      ++..... .+.+.|.|.++..+|+|.|+|.|.|..|....++.+.+...              ......|.+.. .+...
T Consensus       154 ~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  232 (317)
T 2y25_A          154 RVKTGVT-GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV  232 (317)
T ss_dssp             SEEEEEC-SSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEE
T ss_pred             CeEEecc-CCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccE
Confidence            7665443 45568999999999999999999999998888877765421              01112344443 35557


Q ss_pred             eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      .+..|+.++|.|.+.|.|.|.+.|+++|..+..+.++.+..                                  .++..
T Consensus       233 ~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~----------------------------------~~~~~  278 (317)
T 2y25_A          233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKF----------------------------------EAGRT  278 (317)
T ss_dssp             EEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECC----------------------------------BTTTE
T ss_pred             EEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEE----------------------------------cCCCE
Confidence            89999999999999999999999999999987666554422                                  01344


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      +.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       279 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  314 (317)
T 2y25_A          279 AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  314 (317)
T ss_dssp             EEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            669999999999999999999999999999999986

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=5.2e-34  Score=282.46  Aligned_cols=366  Identities=14%  Similarity=0.143  Sum_probs=228.3

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEcc-----------------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEIL-----------------PDNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      ..+.+.+|+.++|.|.+.+.+  .+.+.||++.  ..+.                 ...+..+..+...+.++|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (444)
T 1igt_B            8 GGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLK   87 (444)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCC
Confidence            456788999999999998764  5789999852  2110                 112444444444567899999999


Q ss_pred             CCCCeEEEEEEEcCCcee---EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEE
Q psy16852        172 PQDEAVYSVKAVNTFGRA---ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWF  246 (579)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~  246 (579)
                      .+|+|.|+|.+.+..+..   .....+.+...       ...+|.+........+.+|+.+.|.|.+.+. |.+ .+.|+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  160 (444)
T 1igt_B           88 SEDTAMYYCARHGGYYAMDYWGQGTTVTVSSA-------KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN  160 (444)
T ss_dssp             GGGCEEEEEEEECSSSCEEEEBCCEEEEECSC-------CCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEG
T ss_pred             HHHCEEEEEEEecCCcccccccCcEEEEecCC-------CCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEe
Confidence            999999999999875432   11234444311       1123444322222235789999999999884 776 99999


Q ss_pred             ECCEEecc---Cce---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE----------------eccce
Q psy16852        247 KNGKEIVS---KDI---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT----------------VAEAE  304 (579)
Q Consensus       247 ~~~~~i~~---~~~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~----------------~~~~~  304 (579)
                      +++..+..   ...   ......+.|.|.++..+| |.|+|.|.|..+.......+.+.                +...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p  239 (444)
T 1igt_B          161 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGP  239 (444)
T ss_dssp             GGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCC
T ss_pred             cCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCc
Confidence            98875311   000   011223578999999889 99999999998875444433221                00011


Q ss_pred             eeeeeeeeeccccC-ceeeeecCeeEEEeeeC----CCeEEEEECCEEccCCCeEEEEECCC----CeEEEEEcccCCCC
Q psy16852        305 TVMMDVRVESHPTA-SFQWFIHSEPVVVTGKP----TPLVTWSHDGTPMKEGKEVTIYQDTD----GLCKLAISEVFPEN  375 (579)
Q Consensus       305 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~g~p----~~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d  375 (579)
                      .+.+....   ... ........+.|.+.|.|    .+.+.|++++..+............+    ..+.|.|.++..+|
T Consensus       240 ~v~~~~p~---~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d  316 (444)
T 1igt_B          240 SVFIFPPK---IKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMS  316 (444)
T ss_dssp             EEEEECCC---HHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHT
T ss_pred             eEEecCCc---hhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhcc
Confidence            11111100   000 12233345569999984    36999999998876543221111111    23589999999999


Q ss_pred             CEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCC-ceeeecCCCeEEEEEEEe-eCCC-eEEEeeCCEEcCCCC
Q psy16852        376 AGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLK-PVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEILPDN  452 (579)
Q Consensus       376 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g-~p~~-~v~W~~~~~~l~~~~  452 (579)
                      +|.|+|.|.|..|.......+.+  ......+|.+...+. ...+..| .++|.|.+.| .|++ .|.|+++|..+....
T Consensus       317 ~G~Y~C~a~n~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~  393 (444)
T 1igt_B          317 GKEFKCKVNNKDLPAPIERTISK--PKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYK  393 (444)
T ss_dssp             TCEEEEEEECTTCSSCEEEEEEC--CCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEE
T ss_pred             CCcEEEEEEcCCCCCceEEEEec--cCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccc
Confidence            99999999999886533333321  111224676653332 2234445 4999999998 4655 999999999873211


Q ss_pred             CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        453 GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       453 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      .                ......+.|.|.+.              +.|.|.....+|.|.|+|.|.|...
T Consensus       394 ~----------------~~~~~~~~g~~~~~--------------s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          394 N----------------TEPVLDSDGSYFMY--------------SKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             E----------------CCCEECTTSCEEEE--------------EEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             c----------------ccceeCCCCCEEEE--------------EEEEEChHHhcCCCeEEEEEECCCc
Confidence            0                01111333444433              3488888888899999999999853

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=5.4e-34  Score=276.96  Aligned_cols=306  Identities=18%  Similarity=0.247  Sum_probs=218.9

Q ss_pred             CCeEeccCCceee---CCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEcccCC-CCCeEEEEEE
Q psy16852        211 APTIVRPLQALLV---PKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTK-KTTGKYEIRV  283 (579)
Q Consensus       211 ~p~~~~~~~~~~~---~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~-~d~G~y~C~a  283 (579)
                      +|.+...+....+   .+|+.+.|.|.+.+.|.+.+.|+++|..+....   ....  ...|.|.++.. +|+|.|+|.|
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~--~~~L~i~~~~~~~D~G~Y~C~a   81 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV--AGDLVISNPVKAKDAGSYQCVA   81 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE--TTEEEEESCCHHHHCEEEEEEE
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEee--CCeEEEecccccccCEEEEEEE
Confidence            5666666666555   789999999999999999999999999987542   2222  23699999987 9999999999


Q ss_pred             EcCCeeeEE-EEEEEEEeccceeeeee--eeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECCEEcc--CCCeEEEE
Q psy16852        284 VNEAGEART-SGSVTITVAEAETVMMD--VRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDGTPMK--EGKEVTIY  357 (579)
Q Consensus       284 ~n~~g~~~~-~~~~~v~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~~~~~--~~~~~~~~  357 (579)
                      .|..|.... ...+.|...+.......  ..+..+       ....+.|.+ .+.|.+.+.|++++.++.  ...+... 
T Consensus        82 ~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G-------~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-  153 (382)
T 1cs6_A           82 TNARGTVVSREASLRFGFLQEFSAEERDPVKITEG-------WGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV-  153 (382)
T ss_dssp             EETTEEEECCCEEEEEEEECCCCSSCCCCEEEETT-------SCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE-
T ss_pred             EcCCcEEEecceEEEeeccccccccCCCceEEecC-------CcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEE-
Confidence            999886532 34555543221111000  011111       112234553 567889999999987653  2222222 


Q ss_pred             ECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEE-----EEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEE
Q psy16852        358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVA-----AATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATV  431 (579)
Q Consensus       358 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-----~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~  431 (579)
                      ....  ..|.|.++..+|+|.|+|.+.|..|....     ...|.+........+|.+.. .+....+.+|+.++|.|.+
T Consensus       154 ~~~~--~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~  231 (382)
T 1cs6_A          154 SQTT--GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA  231 (382)
T ss_dssp             CTTT--CCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEE
T ss_pred             ecCc--eEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEE
Confidence            1222  27999999999999999999998743222     23455443222222455543 3456789999999999999


Q ss_pred             EeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccce
Q psy16852        432 TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG  511 (579)
Q Consensus       432 ~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  511 (579)
                      .|.|.|.+.|++++..+....                                         ....+.|.|.+++.+|+|
T Consensus       232 ~g~p~~~i~W~~~~~~~~~~~-----------------------------------------~~~~~~L~i~~~~~~d~G  270 (382)
T 1cs6_A          232 FGNPVPQIKWRKLDGSQTSKW-----------------------------------------LSSEPLLHIQNVDFEDEG  270 (382)
T ss_dssp             EEESCCEEEEEECCSCCSCCC-----------------------------------------SBSSSEEEECSCCGGGCE
T ss_pred             ccCCCCEEEEEECCcccccEE-----------------------------------------ecCCcEEEEccCChhhCE
Confidence            999999999999876653200                                         112345999999999999


Q ss_pred             eEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852        512 DVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       512 ~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~  578 (579)
                      .|+|.|.|..|.....+.|.|.         .+|.+...+....+..|+.++|.|.+.+.|++.|.|
T Consensus       271 ~Y~C~a~n~~g~~~~~~~l~V~---------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W  328 (382)
T 1cs6_A          271 TYECEAENIKGRDTYQGRIIIH---------AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW  328 (382)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE---------EEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEE
T ss_pred             EEEEEEEcCCCeEEEEEEEEEe---------cCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEE
Confidence            9999999999999888888865         678888888889999999999999999999988877

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.6e-34  Score=280.72  Aligned_cols=317  Identities=19%  Similarity=0.258  Sum_probs=227.9

Q ss_pred             ccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCCeEEEEECCEEeccCc--eEEeCCeEEEEEcccCCCCCeEEEEEEE
Q psy16852        208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKD--IETKDNVTKLVIKQTTKKTTGKYEIRVV  284 (579)
Q Consensus       208 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~i~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~  284 (579)
                      +..+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|+++|..+....  .........|.|.+++.+|+|.|+|.|.
T Consensus         3 v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (395)
T 1bih_A            3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE   82 (395)
T ss_dssp             --CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEE
T ss_pred             cCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEE
Confidence            346888888888888999999999999998 7888999999998886553  3334455679999999999999999999


Q ss_pred             cCCeeeE-EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECC---EEccC----CCeEE
Q psy16852        285 NEAGEAR-TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDG---TPMKE----GKEVT  355 (579)
Q Consensus       285 n~~g~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~---~~~~~----~~~~~  355 (579)
                      |..|... ..+.+.+.....+.+...      ...........+.|.+ .|.|.+.+.|++++   .+...    ..++.
T Consensus        83 n~~g~~~s~~~~l~v~~~~~p~~~~~------~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  156 (395)
T 1bih_A           83 TPAGVASSRVISFRKTYLIASPAKTH------EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRIT  156 (395)
T ss_dssp             ETTEEEECCCEEEEEEEEECCCCEEE------EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEE
T ss_pred             eCCCeEEeEEEEEEEEEeecCCcCCc------ceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEE
Confidence            9888754 234555543332222111      1111122333445774 78899999999986   22211    22222


Q ss_pred             EEECCCCeEEEEEcccCCCCCE---EEEEEEEcCceeEEEEEEEEEEecccC-------CCCCeeecCCCceeeecCCCe
Q psy16852        356 IYQDTDGLCKLAISEVFPENAG---LYSCTAVNPVGEAVAAATLAVEEKEES-------GEAPKFTKPLKPVIAEAQSPA  425 (579)
Q Consensus       356 ~~~~~~~~~~l~i~~~~~~d~G---~Y~C~a~n~~g~~~~~~~l~v~~~~~~-------~~~p~~~~~~~~~~~~~g~~~  425 (579)
                      .  ..++  .|.|.++..+|+|   .|+|.|.|..|................       ..+|.+  .+....+.+|+.+
T Consensus       157 ~--~~~~--~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v  230 (395)
T 1bih_A          157 A--GPDG--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVT  230 (395)
T ss_dssp             E--CTTS--CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCE
T ss_pred             E--cCCC--cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcE
Confidence            2  2233  6999999999999   999999999886544333222211110       113333  2456778999999


Q ss_pred             EEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeec
Q psy16852        426 TLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI  505 (579)
Q Consensus       426 ~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~  505 (579)
                      +|.|.+.|.|.+.+.|+++|..+.......+..                                 ......+.|.|.++
T Consensus       231 ~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~---------------------------------~~~~~~~~L~i~~~  277 (395)
T 1bih_A          231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR---------------------------------HNRTSGKRLLFKTT  277 (395)
T ss_dssp             EEEEEEECSSCCCCEEEETTEECCCCTTSSEES---------------------------------CSSSTTSEEEESSC
T ss_pred             EEEEEeccCCCCeEEEEECCEEcCCCCceeEEE---------------------------------EecCCCceEEEccC
Confidence            999999999999999999999886544332211                                 00122346999999


Q ss_pred             ccccceeEEEEEEeCCeeEEE-EEEEEEeeCCcccccccCCccccCCCc-eEEecCCcEEEEEEeccceeecccc
Q psy16852        506 TRDQIGDVTCRAENVAGSVTC-TATLSLLPESEVTDVMESPRFIKTPET-AKVMDGQSVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       506 ~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~~~  578 (579)
                      ..+|+|.|+|.|.|..|.... ++.|.|.         .+|.+...+.. ..+..|+.++|.|.+.+.|+++|.|
T Consensus       278 ~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~---------~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W  343 (395)
T 1bih_A          278 LPEDEGVYTCEVDNGVGKPQKHSLKLTVV---------SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW  343 (395)
T ss_dssp             CGGGCEEEEEEECCSSSSCEEEEEEEEEE---------EEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEE
T ss_pred             ChhhCEEEEEEEEeCCCCceEEEEEEEEE---------cCCccccCCCcceEecCCCeEEEEEEECcccCCeeEE
Confidence            999999999999999998655 8888865         67888877776 8899999999999999999998877

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=265.05  Aligned_cols=282  Identities=16%  Similarity=0.245  Sum_probs=212.1

Q ss_pred             cCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE
Q psy16852         13 IQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS   91 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~   91 (579)
                      +-.+.|.+|+.+.|+|... +.|.+.+.|+|+|..+....++.....+....|.|.+++.+|+|.|+|.+.|..|... +
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s   86 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-S   86 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-E
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-E
Confidence            4457899999999999985 4678899999999999988888888888889999999999999999999999877544 4


Q ss_pred             EEEEEEecccCC------CCCceecCC-CceEEccCCcEEEEEEEE-eecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852         92 ANLIVLEKEESG------EAPKFTKPL-KPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC  163 (579)
Q Consensus        92 ~~~~v~~~~~~~------~~~~~~~~~-~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  163 (579)
                      ..+.|.......      .+|.+.... ....+.+|+.+.|.|.+. +.|.+.+.|++++..+....+..+..+...+..
T Consensus        87 ~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~  166 (312)
T 2y23_A           87 YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII  166 (312)
T ss_dssp             EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEE
T ss_pred             EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEE
Confidence            445543210000      022222222 267788999999999998 889999999999999988877777776667778


Q ss_pred             EEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccC----------CCCccCCCeEeccCCceeeCCCCeEEEEE
Q psy16852        164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID----------KPRVLEAPTIVRPLQALLVPKDSTVTLEA  233 (579)
Q Consensus       164 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~p~~~~~~~~~~~~~g~~~~l~C  233 (579)
                      .|.|.+++.+|+|.|+|.+.+..+.....  +.+.......          ......+|.+..... ..+.+|+.+.|.|
T Consensus       167 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~v~~G~~~~l~C  243 (312)
T 2y23_A          167 EMFMEKLQDEDEGTYTFQLQDGKATNHST--VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNVLLKC  243 (312)
T ss_dssp             EEEESCCCGGGCEEEEEEEESSSCEEEEE--EEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE-EEEETTTEEEEEE
T ss_pred             EEEEccCCcccCEeEEEEEEeCCceEEEE--EEEcchhhhhhcccccccccchhhccCCceeecce-EEEeCCCEEEEEE
Confidence            89999999999999999998755443332  3321000000          000112355443333 5688999999999


Q ss_pred             EEEccCCC-eEEEEECCEEeccCc-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        234 EYTGTPTP-EVKWFKNGKEIVSKD-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       234 ~~~~~p~~-~v~W~~~~~~i~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                      .+.+.|.+ .+.|++++..+.... .........|.|.++..+|+|.|+|.|.|..|....++.|.+
T Consensus       244 ~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          244 KVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             EEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             EEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            99999888 999999999987433 333355679999999999999999999999999887777654

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=100.00  E-value=7.7e-34  Score=282.21  Aligned_cols=370  Identities=14%  Similarity=0.215  Sum_probs=227.1

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CE---Ee--------------cCCCCEEEEEe--CCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GT---EL--------------HATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~---~~--------------~~~~~~~~~~~--~~~~~L~i   66 (579)
                      +..|..+.+.+|++++|.|.+.+.+  .+.+.|||+  |.   .+              ....++.+...  .....|+|
T Consensus         4 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (457)
T 1hzh_H            4 LVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL   83 (457)
T ss_dssp             EEECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEE
Confidence            3456778999999999999998765  568999984  22   11              01245555443  35689999


Q ss_pred             cCCCCCCCEEEEEEEEcCCe------------eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c
Q psy16852         67 INPTKEDIGVYTCKATNIGG------------VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P  133 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p  133 (579)
                      .+++.+|+|.|+|.+.+..|            .....+.+.|...+  ..+|.+........+.+|+.++|.|.+.+. |
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  161 (457)
T 1hzh_H           84 RSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  161 (457)
T ss_dssp             CSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCC--CBCCEEEEECCCSCCCTTCCEEEEEEEESBBS
T ss_pred             CCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCC--CCCCeEEecCccccccCCCcEEEEEEEeEEeC
Confidence            99999999999999998754            22234567775421  123443332223345789999999999886 6


Q ss_pred             C-CeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccC----
Q psy16852        134 T-PSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID----  204 (579)
Q Consensus       134 ~-~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~----  204 (579)
                      . +.|.|++++..+... ...... ..++    .+.|.|.++..+| |.|+|.+.|..+.......+.+.......    
T Consensus       162 ~~~~v~W~k~~~~~~~~-~~~~~~-~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~  238 (457)
T 1hzh_H          162 EPVTVSWNSGALTSGVH-TFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPP  238 (457)
T ss_dssp             CCCEEEETTTTBCTTEE-EEEEEE-CTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCS
T ss_pred             CCeEEEEEeCCEeccce-EcCceE-CCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCC
Confidence            4 799999998643211 000111 1111    2479999999999 99999999987765444333322100000    


Q ss_pred             --CCCccCCCeE-eccCCcee-eCCCCeEEEEEEEEccCCC----eEEEEECCEEeccCce--EEeCCeEEEEE------
Q psy16852        205 --KPRVLEAPTI-VRPLQALL-VPKDSTVTLEAEYTGTPTP----EVKWFKNGKEIVSKDI--ETKDNVTKLVI------  268 (579)
Q Consensus       205 --~~~~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~i~~~~~--~~~~~~~~l~i------  268 (579)
                        .+.+..+|.+ ..++.... +.+|+.+.|.|.+.+.|++    .+.|++++..+.....  ........+.+      
T Consensus       239 ~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i  318 (457)
T 1hzh_H          239 CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTV  318 (457)
T ss_dssp             CCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECC
T ss_pred             CCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEE
Confidence              0011234554 33333222 6789999999999987543    9999999988764321  11111112222      


Q ss_pred             cccCCCCCeEEEEEEEcCCeeeEEEEEEEE--EeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCC--eEEEEEC
Q psy16852        269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTI--TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP--LVTWSHD  344 (579)
Q Consensus       269 ~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~--~i~W~~~  344 (579)
                      .....+|+|.|+|.|.|..+.......+.+  .+...+.+.+...    ....+......+.|.+.|.+++  .+.|+++
T Consensus       319 ~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~----~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~  394 (457)
T 1hzh_H          319 LHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP----SRDELTKNQVSLTCLVKGFYPSDIAVEWESN  394 (457)
T ss_dssp             CHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECC----CGGGGGSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECC----CccccCCCcEEEEEEEEeEECCCCEEEEEEC
Confidence            233333499999999987655433333322  1223333332211    1111111124567999997554  9999999


Q ss_pred             CEEccCCCeEEEEECCCCe----EEEEEcccCCCCCEEEEEEEEcCce
Q psy16852        345 GTPMKEGKEVTIYQDTDGL----CKLAISEVFPENAGLYSCTAVNPVG  388 (579)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g  388 (579)
                      |..+............++.    +.|.|.....+|+|.|+|.|.|...
T Consensus       395 g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          395 GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  442 (457)
T ss_dssp             TEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence            9998654332222333432    3466666666789999999999764

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=5.6e-34  Score=279.27  Aligned_cols=314  Identities=19%  Similarity=0.339  Sum_probs=222.8

Q ss_pred             cCCCeEec-cCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEc----ccCCCCCeEEE
Q psy16852        209 LEAPTIVR-PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIK----QTTKKTTGKYE  280 (579)
Q Consensus       209 ~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~----~~~~~d~G~y~  280 (579)
                      ..+|.+.. ++....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....   .........|.|.    ++..+|+|.|+
T Consensus        14 ~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~   93 (404)
T 3p3y_A           14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ   93 (404)
T ss_dssp             CCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEE
T ss_pred             cCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEE
Confidence            45676664 4566789999999999999999999999999999875432   2222334456554    78889999999


Q ss_pred             EEEEcCCeeeE-EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECCEEc-cCCCeEEEE
Q psy16852        281 IRVVNEAGEAR-TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDGTPM-KEGKEVTIY  357 (579)
Q Consensus       281 C~a~n~~g~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~~~~-~~~~~~~~~  357 (579)
                      |.|.|..|... ....+.|...+........     +..........+.|.+ .|.|.+.+.|++++... ....+... 
T Consensus        94 C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~-----~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~-  167 (404)
T 3p3y_A           94 CFARNKFGTALSNRIRLQVSKSPLWPKENLD-----PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ-  167 (404)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCCCCCCCCCC-----CEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEE-
T ss_pred             EEEEcCCCeEeeeeEEEEEeccCccccCCCC-----CeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEE-
Confidence            99999988753 3444444322211100000     0001111222345766 78899999999987543 33333332 


Q ss_pred             ECCCCeEEEEEcccCCCC-CEEEEEEEEcCceeEEE---EEEEEEEeccc-CCCCCeeecCC---CceeeecCCCeEEEE
Q psy16852        358 QDTDGLCKLAISEVFPEN-AGLYSCTAVNPVGEAVA---AATLAVEEKEE-SGEAPKFTKPL---KPVIAEAQSPATLKA  429 (579)
Q Consensus       358 ~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~---~~~l~v~~~~~-~~~~p~~~~~~---~~~~~~~g~~~~l~C  429 (579)
                       ..++  .|.|.++..+| +|.|+|.|.|..|....   .+.+.+...+. ...+|.+..+.   ....+.+|+.++|.|
T Consensus       168 -~~~~--~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C  244 (404)
T 3p3y_A          168 -GHNG--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLEC  244 (404)
T ss_dssp             -CTTS--CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEEC
T ss_pred             -cCCC--cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEE
Confidence             2223  69999999999 59999999998775322   24555543221 12244444332   345688999999999


Q ss_pred             EEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc
Q psy16852        430 TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ  509 (579)
Q Consensus       430 ~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d  509 (579)
                      .+.|.|.+.+.|+++|..+...... .                                     ....+.|.|.++..+|
T Consensus       245 ~~~g~p~~~v~W~~~~~~~~~~~~~-~-------------------------------------~~~~~~L~i~~~~~~d  286 (404)
T 3p3y_A          245 IASGVPTPDIAWYKKGGDLPSDKAK-F-------------------------------------ENFNKALRITNVSEED  286 (404)
T ss_dssp             CBCCSSCCEEEEEETTBCCCTTTEE-E-------------------------------------EGGGTEEEESSCCGGG
T ss_pred             EECCCCCCcEEEEECCEECCCCccc-c-------------------------------------cccCceEEEccCCHhH
Confidence            9999999999999999887544321 1                                     1123459999999999


Q ss_pred             ceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCCcEEEEEEeccceeecccc
Q psy16852        510 IGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQSVLFTAQVGYSERLEIPL  578 (579)
Q Consensus       510 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~  578 (579)
                      +|.|+|.|.|..|.....+.|.|.         .+|.+...+....+..|+.++|.|.+.++|++.|.|
T Consensus       287 ~G~Y~C~a~n~~g~~~~~~~l~V~---------~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W  346 (404)
T 3p3y_A          287 SGEYFCLASNKMGSIRHTISVRVK---------AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQW  346 (404)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE---------EEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEE
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEe---------CCCeeeccCCcceeecCCcEEEEEEccccCCCceEE
Confidence            999999999999999888888865         678888888889999999999999999999988877

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=100.00  E-value=1.6e-31  Score=266.53  Aligned_cols=369  Identities=14%  Similarity=0.158  Sum_probs=227.2

Q ss_pred             CCCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc--------------CCCCceEEEcCCCCeEEEEECc
Q psy16852        111 PLKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL--------------PDNGHTMEFNPTTGECVLSISE  169 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~l~i~~  169 (579)
                      .+..+.+.+|+.++|.|.+.+.+  ...+.||+..  ..   +.              ...++.+..+...+..+|.|.+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (475)
T 1iga_A            7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS   86 (475)
T ss_pred             cCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECC
Confidence            45667888999999999998754  5789999853  11   10              0123333333334567999999


Q ss_pred             CCCCCCeEEEEEEEcCCce------eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-C
Q psy16852        170 ATPQDEAVYSVKAVNTFGR------AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-P  241 (579)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~  241 (579)
                      ++.+|+|.|+|.+.+..+.      ......+.|...       ...+|.+..... ..+.+|+.+.|.|.+.+. |. +
T Consensus        87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p  158 (475)
T 1iga_A           87 LRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSA-------SPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEP  158 (475)
T ss_pred             CChhhCEEEEEEEeccCCCccceeeecCceEEEeccC-------CCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCc
Confidence            9999999999999987652      112234444310       012344332221 123689999999999986 65 5


Q ss_pred             -eEEEEECCEEeccCc---e-----EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEecc----------
Q psy16852        242 -EVKWFKNGKEIVSKD---I-----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE----------  302 (579)
Q Consensus       242 -~v~W~~~~~~i~~~~---~-----~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~----------  302 (579)
                       .+.|++++.......   .     ......+.|.|.....+|.|.|+|.|.|..+. .....+.+.+..          
T Consensus       159 ~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~v~l~V~~~~~~~~~~~~  237 (475)
T 1iga_A          159 LSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP-SQDVTVPCPVPSTPPTPSPSTP  237 (475)
T ss_pred             eEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC-ceeeeEecccccCccccccccc
Confidence             999999885321110   0     01111246888888889999999999998863 223333322211          


Q ss_pred             --------ceeeeeeeeeeccccCceeeeecCeeEEEeeeCC---CeEEEEECCEEccCCCeEEEEECCC----CeEEEE
Q psy16852        303 --------AETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT---PLVTWSHDGTPMKEGKEVTIYQDTD----GLCKLA  367 (579)
Q Consensus       303 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~---~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~l~  367 (579)
                              .+.+.+..   .............+.|.+.|.++   +.++|  ++..+............+    ..+.|.
T Consensus       238 ~~~~~~~~~p~v~~~~---p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~  312 (475)
T 1iga_A          238 PTPSPSCCHPRLSLHR---PALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLP  312 (475)
T ss_pred             ccCCCCCCCcEEEEcC---CChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEE
Confidence                    11111110   00001123344556798888755   69999  444433221111111111    234799


Q ss_pred             EcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecC-CCceeeecCCCeEEEEEEEeeCC--CeEEEeeC
Q psy16852        368 ISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKP-LKPVIAEAQSPATLKATVTGRPT--PSICWYRG  444 (579)
Q Consensus       368 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~  444 (579)
                      |.++..+|+|.|+|.|.|..|.......+.+..   ...+|.+... +....+..|+.++|.|.+.|.++  +.|.|+++
T Consensus       313 I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~---~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~  389 (475)
T 1iga_A          313 GCAEPWNHGKTFTCTAAYPESKTPLTATLSKSG---NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQG  389 (475)
T ss_pred             EchHHhccCCcEEEEEEcCCCCCceEEEeecCC---CCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEEC
Confidence            999999999999999999988765444443311   1246666533 33334678999999999998643  49999999


Q ss_pred             CEEcCCCCCeeEEEcCCCCeEEEEEccccCC---CceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852        445 KEEILPDNGHTMEFNPTTGECVLSISEATPQ---DEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~---d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      |..+..+....              ......   ..|.|...              +.|.|.....+|.|.|+|.|.|..
T Consensus       390 g~~l~~~~~~~--------------~~~~~~~~~~~gt~~~~--------------s~L~i~~~~~~~~g~YtC~a~n~~  441 (475)
T 1iga_A          390 SQELPREKYLT--------------WASRQEPSQGTTTFAVT--------------SILRVAAEDWKKGDTFSCMVGHEA  441 (475)
T ss_pred             CEECCCCceee--------------cccccccCCCCCcEEEE--------------EEEEEChHHhcCCCEEEEEEEcCC
Confidence            99886542111              011112   33445433              348899888899999999999986


Q ss_pred             eeE
Q psy16852        522 GSV  524 (579)
Q Consensus       522 g~~  524 (579)
                      ...
T Consensus       442 l~~  444 (475)
T 1iga_A          442 LPL  444 (475)
T ss_pred             CCC
Confidence            653

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=100.00  E-value=1.3e-32  Score=273.32  Aligned_cols=368  Identities=13%  Similarity=0.121  Sum_probs=225.1

Q ss_pred             CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc--------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL--------------PDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +..+.+.+|+.++|.|.+.+.+  .+.+.||++.  .   .+.              ...+..+..+...+...|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (457)
T 1hzh_H            7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (457)
T ss_dssp             CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence            3456788999999999998766  6789999842  1   110              12233444444456789999999


Q ss_pred             CCCCCeEEEEEEEcCCc------------eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc
Q psy16852        171 TPQDEAVYSVKAVNTFG------------RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT  238 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  238 (579)
                      +.+|+|.|+|.+.+..+            .......+.+...       ...+|.+........+.+|+.+.|.|.+.+.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~  159 (457)
T 1hzh_H           87 RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSA-------STKGPSVFPLAPSSKSTSGGTAALGCLVKDY  159 (457)
T ss_dssp             CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSC-------CCBCCEEEEECCCSCCCTTCCEEEEEEEESB
T ss_pred             CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCC-------CCCCCeEEecCccccccCCCcEEEEEEEeEE
Confidence            99999999999998754            1112334444321       1124544433333346789999999999986


Q ss_pred             -CC-CeEEEEECCEEeccCc--eEE-----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec--------
Q psy16852        239 -PT-PEVKWFKNGKEIVSKD--IET-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA--------  301 (579)
Q Consensus       239 -p~-~~v~W~~~~~~i~~~~--~~~-----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~--------  301 (579)
                       |. +.+.|++++..+....  ...     ....+.|.|.++..+| |.|+|.|.|..+.......+.+...        
T Consensus       160 ~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~  238 (457)
T 1hzh_H          160 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPP  238 (457)
T ss_dssp             BSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCS
T ss_pred             eCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCC
Confidence             65 7999999986432111  000     1112479999999989 9999999998776544433332210        


Q ss_pred             -------cceeeeeeeeeeccccC-ceeeeecCeeEEEeeeCCC----eEEEEECCEEccCCCeEEEEECCCCeE----E
Q psy16852        302 -------EAETVMMDVRVESHPTA-SFQWFIHSEPVVVTGKPTP----LVTWSHDGTPMKEGKEVTIYQDTDGLC----K  365 (579)
Q Consensus       302 -------~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~g~p~~----~i~W~~~~~~~~~~~~~~~~~~~~~~~----~  365 (579)
                             ..+.+.+..   ..... ........+.|.+.|.|++    .++|++++..+............++..    .
T Consensus       239 ~~~~~~~~~p~v~~~~---p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~  315 (457)
T 1hzh_H          239 CPAPELLGGPSVFLFP---PKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSV  315 (457)
T ss_dssp             CCCCCCSSSCEEEEEC---CCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEE
T ss_pred             CCCccccCCceEEeEC---cCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEE
Confidence                   011111110   00000 1123345567999998653    999999999886544333333333321    2


Q ss_pred             EEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCC-CceeeecCCCeEEEEEEEeeCCC--eEEEe
Q psy16852        366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTP--SICWY  442 (579)
Q Consensus       366 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~--~v~W~  442 (579)
                      |.|.....+|+|.|+|.|.|..+.......+.+  ......+|.+...+ ....+..|+ ++|.|.+.|.|++  .|.|+
T Consensus       316 l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~  392 (457)
T 1hzh_H          316 LTVLHQDWLNGKEYKCKVSNKALPAPIEKTISK--AKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWE  392 (457)
T ss_dssp             ECCCHHHHHHTCCEEEEEECTTSSSCEEEEECC--CCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEE
T ss_pred             EEECHHHccCCCcEEEEEeCCCCCCcceEEEEc--ccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEE
Confidence            222232233499999999987654433333322  11122366665433 333455566 9999999997554  99999


Q ss_pred             eCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      ++|..+......                .......|.|.+.              +.|.|.....+|+|.|+|.|.|...
T Consensus       393 k~g~~l~~~~~~----------------~~~~~~~g~~~~~--------------s~l~i~~~~~~~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          393 SNGQPENNYKTT----------------PPVLDSDGSFFLY--------------SKLTVDKSRWQQGNVFSCSVMHEAL  442 (457)
T ss_dssp             ETTEECCCEEEC----------------CCEECTTSCEEEE--------------EEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ECCEECcceeec----------------CceeCCCCCEEEE--------------EEEEEChHHccCCCeEEEEEEECCC
Confidence            999988532111                1112233444333              3488888888899999999999865


Q ss_pred             e
Q psy16852        523 S  523 (579)
Q Consensus       523 ~  523 (579)
                      .
T Consensus       443 ~  443 (457)
T 1hzh_H          443 H  443 (457)
T ss_dssp             G
T ss_pred             C
Confidence            4

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-32  Score=253.34  Aligned_cols=271  Identities=20%  Similarity=0.353  Sum_probs=193.3

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEE-CCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEc
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK-NGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVN  285 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~-~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n  285 (579)
                      .+|.+...+....+.+|+.+.|.|.+.+.|. .+.|++ +|..+....   .........|.|.++..+|+|.|+|.+.|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            4567777778888999999999999998775 899999 676665433   22334567899999999999999999999


Q ss_pred             CCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCC--CeEEEEECCCCe
Q psy16852        286 EAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG--KEVTIYQDTDGL  363 (579)
Q Consensus       286 ~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~  363 (579)
                      ..|... +..+.+.+...+.+....    ............+.|.+.|.|.+.+.|++++..+...  .++..  ..++ 
T Consensus        82 ~~g~~~-~~~~~l~v~~~~~~~~~~----~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~-  153 (291)
T 2wim_A           82 AKGQTQ-EATVVLEIYQKLTFREVV----SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM--LANN-  153 (291)
T ss_dssp             SSSCEE-EEEEEEEEECCCBCCSCC----CSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEE--CTTS-
T ss_pred             ccCceE-EEEEEEEecCCcceEeCC----CChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEE--ccCC-
Confidence            887653 223333333322211110    0000111122334577889999999999999887643  33322  2222 


Q ss_pred             EEEEEcccCCCCCEEEEEEEEcCceeE--EEEEEEEEEecccCCCCCeeecCCC--ceeeecCCCeEEEEEEEeeCCCeE
Q psy16852        364 CKLAISEVFPENAGLYSCTAVNPVGEA--VAAATLAVEEKEESGEAPKFTKPLK--PVIAEAQSPATLKATVTGRPTPSI  439 (579)
Q Consensus       364 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~v  439 (579)
                       .|.|.++..+|+|.|+|.+.|..+..  ...+.+.+..      +|.+.....  ...+.+|+.++|.|.+.|.|.|.+
T Consensus       154 -~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v  226 (291)
T 2wim_A          154 -NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI  226 (291)
T ss_dssp             -CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB------CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEE
T ss_pred             -CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc------CCccccCcccccceecCCCeEEEEEEeecCCCCeE
Confidence             69999999999999999999987543  3445666654      455544333  356788999999999999999999


Q ss_pred             EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .|+++|..+..+.++.+                                     .+..+.|.|.++..+|+|.|+|.|.|
T Consensus       227 ~W~~~g~~~~~~~~~~~-------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~N  269 (291)
T 2wim_A          227 SWFRNGKLIEENEKYIL-------------------------------------KGSNTELTVRNIINSDGGPYVCRATN  269 (291)
T ss_dssp             EEEETTEECCCTTTEEE-------------------------------------CSTTCEEEEESCCSTTCEEEEEEEEE
T ss_pred             EEEECCEECcCCccEEE-------------------------------------cCCccEEEEeeCCcccCEEEEEEEEE
Confidence            99999999876655433                                     12234599999999999999999999


Q ss_pred             CCeeEEEEEEEEEe
Q psy16852        520 VAGSVTCTATLSLL  533 (579)
Q Consensus       520 ~~g~~~~~~~l~v~  533 (579)
                      ..|....++.|.|.
T Consensus       270 ~~G~~~~~~~l~v~  283 (291)
T 2wim_A          270 KAGEDEKQAFLQVF  283 (291)
T ss_dssp             TTEEEEEEEEEEC-
T ss_pred             CCCceeeeEEEEEE
Confidence            99999999999985

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=1.3e-31  Score=249.85  Aligned_cols=280  Identities=17%  Similarity=0.220  Sum_probs=200.6

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEE-CCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEE
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  182 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  182 (579)
                      ++.+...+....+.+|+.+.|.|.+.+.| .+.+.|++ ++..+..................|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            34556667778899999999999998876 58999999 66666543322222222235678999999999999999999


Q ss_pred             EcCCcee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--eEE
Q psy16852        183 VNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IET  259 (579)
Q Consensus       183 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~~~  259 (579)
                      .+..|.. .....+.+.           .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ...
T Consensus        82 ~n~~g~~~~~~~~l~v~-----------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~  150 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIF-----------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI  150 (291)
T ss_dssp             ECTTSCEEEEEEEEEEE-----------CCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEE
T ss_pred             EcCCCCeeEEEEEEEee-----------ccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEE
Confidence            9988643 333444432           56677777777788999999999999999999999999998775432  122


Q ss_pred             eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeE
Q psy16852        260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLV  339 (579)
Q Consensus       260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i  339 (579)
                      ......|.|.++..+|+|.|+|.|.|..+.......+.+.+...+.+.......  ...........+.|.+.|.|.+.+
T Consensus       151 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~--~~~~~~g~~v~l~C~~~g~p~p~i  228 (291)
T 1qz1_A          151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIV--NATANLGQSVTLVCDADGFPEPTM  228 (291)
T ss_dssp             ECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEE--EEETTSCCCEEEEEEEEEESCCEE
T ss_pred             EccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCccccccccc--ccccccCceEEEEEEEEEeCCCcE
Confidence            233357999999999999999999987654443444444443333332211100  000111223345689999999999


Q ss_pred             EEEECCEEccCCC----eEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEe
Q psy16852        340 TWSHDGTPMKEGK----EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE  400 (579)
Q Consensus       340 ~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  400 (579)
                      .|+++|..+....    ++...   ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       229 ~W~~~g~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          229 SWTKDGEPIENEEEDDEKHIFS---DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EEEETTEECCCC--CCSSEEEC---TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEECCEECcCCCCCCcceEEc---CCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            9999999987664    33321   2234899999999999999999999999999999998864

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=100.00  E-value=3.9e-34  Score=272.48  Aligned_cols=287  Identities=23%  Similarity=0.386  Sum_probs=138.4

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ++.+|.+. .|.++.+.+|+.++|.|.+.+. |.+.+.|+|+|..+....++..    ....|.|.+++.+|+|.|+|.+
T Consensus         6 ~~p~p~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a   80 (334)
T 1ry7_B            6 EVPGPEPG-QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQ   80 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCCCC-CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe----ccceEEEeecccccCEEEEEEE
Confidence            34445444 4889999999999999999876 5679999999998876554433    3468999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEecccCC----------------CCCceecC----CCceEEccCCcEEEEEEEEeecCCeEEEEE
Q psy16852         82 TNIGGVATCSANLIVLEKEESG----------------EAPKFTKP----LKPVIAEAQSPATLKATVTGRPTPSICWYR  141 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~~~~----------------~~~~~~~~----~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~  141 (579)
                      .|. |.....+.|.|...+...                .+|.+..+    .....+.+|+.+.|.|.+.+.|.+.+.|++
T Consensus        81 ~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~  159 (334)
T 1ry7_B           81 RLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK  159 (334)
T ss_dssp             ---------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCB
T ss_pred             EeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEE
Confidence            998 766777777776543211                12333321    233678899999999999999999999999


Q ss_pred             CCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEec-cCCc
Q psy16852        142 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVR-PLQA  220 (579)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~-~~~~  220 (579)
                      ++..+........ .....+...|.|.+++.+|+|.|+|.+.|..|.......+.+....       ..+|.+.. .+..
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~-------~~~p~~~~~~~~~  231 (334)
T 1ry7_B          160 NGREFRGEHRIGG-IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS-------PHRPILQAGLPAN  231 (334)
T ss_dssp             TTBCCCTTSSTTC-CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCC-------CSSCBCCTTCSCC
T ss_pred             CCEECcccccccc-eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCC-------CCCCceEecCCCc
Confidence            9988765443211 1112334589999999999999999999999887777666665311       11233322 2345


Q ss_pred             eeeCCCCeEEEEEEEEccCCCeEEEEE----CCEEeccCce---EE---------eCCeEEEEEcccCCCCCeEEEEEEE
Q psy16852        221 LLVPKDSTVTLEAEYTGTPTPEVKWFK----NGKEIVSKDI---ET---------KDNVTKLVIKQTTKKTTGKYEIRVV  284 (579)
Q Consensus       221 ~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~i~~~~~---~~---------~~~~~~l~i~~~~~~d~G~y~C~a~  284 (579)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++    +|..+.....   ..         ......|.|.++..+|+|.|+|.|.
T Consensus       232 ~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  311 (334)
T 1ry7_B          232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG  311 (334)
T ss_dssp             EEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEE
T ss_pred             eEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEe
Confidence            668899999999999999999999999    6666543221   00         1122479999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEeccc
Q psy16852        285 NEAGEARTSGSVTITVAEA  303 (579)
Q Consensus       285 n~~g~~~~~~~~~v~~~~~  303 (579)
                      |..|....++.|.|...+.
T Consensus       312 N~~G~~~~~~~l~V~~~~~  330 (334)
T 1ry7_B          312 NSIGFSHHSAWLVVLPAEE  330 (334)
T ss_dssp             ESSCCEEEEEEEEEECSCC
T ss_pred             CCCCeEEEEEEEEEEECCC
Confidence            9999988888877764443

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=100.00  E-value=6e-31  Score=262.43  Aligned_cols=370  Identities=12%  Similarity=0.120  Sum_probs=226.3

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---ec--------------CCCCEEEEEe--CCEEEEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---LH--------------ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~~--------------~~~~~~~~~~--~~~~~L~   65 (579)
                      .+..|.++.+.+|++++|.|.+.+.+  ...+.|||+.  ..   +.              ...++.+...  ....+|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (475)
T 1iga_A            4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG   83 (475)
T ss_pred             eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence            44568889999999999999998754  4689999953  21   10              1234444332  3457899


Q ss_pred             EcCCCCCCCEEEEEEEEcCCee------eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-C-e
Q psy16852         66 IINPTKEDIGVYTCKATNIGGV------ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-P-S  136 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~~g~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~-~  136 (579)
                      |.+++.+|+|.|+|.+.+..|.      ....+.|.|....  ..+|.+.... ...+.+|+.++|.|.+.+. |. + .
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~-~~~~~~g~~v~L~C~~~g~~P~~p~~  160 (475)
T 1iga_A           84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSAS--PTSPKVFPLS-LCSTQPDGNVVIACLVQGFFPQEPLS  160 (475)
T ss_pred             ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCC--CcCCeEEecC-ccccCCCCeEEEEEEEeeecCCCceE
Confidence            9999999999999999987652      2234566665321  1233333222 1123689999999999887 55 4 9


Q ss_pred             EEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccC--------
Q psy16852        137 ICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID--------  204 (579)
Q Consensus       137 i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~--------  204 (579)
                      |.|++++....... ........++    ...|.|..+..+|+|.|+|.|.|..+. .....+.+.+.....        
T Consensus       161 v~W~~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~v~l~V~~~~~~~~~~~~~  238 (475)
T 1iga_A          161 VTWSESGQGVTARN-FPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP-SQDVTVPCPVPSTPPTPSPSTPP  238 (475)
T ss_pred             EEEcCCCcccceEe-CCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC-ceeeeEecccccCcccccccccc
Confidence            99998874321100 0000000111    246889999999999999999998763 222233321100000        


Q ss_pred             --CCCccCCCeE-eccCCceeeCCCCeEEEEEEEEccCC---CeEEEEECCEEeccCc----eE----EeCCeEEEEEcc
Q psy16852        205 --KPRVLEAPTI-VRPLQALLVPKDSTVTLEAEYTGTPT---PEVKWFKNGKEIVSKD----IE----TKDNVTKLVIKQ  270 (579)
Q Consensus       205 --~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~i~~~~----~~----~~~~~~~l~i~~  270 (579)
                        .... .+|.+ ..++....+.+|+.+.|.|.+.+.++   +.+.|  ++..+....    ..    .....+.|.|.+
T Consensus       239 ~~~~~~-~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~  315 (475)
T 1iga_A          239 TPSPSC-CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCA  315 (475)
T ss_pred             cCCCCC-CCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEch
Confidence              0001 23443 33333333678999999999998644   58999  444432211    00    011345799999


Q ss_pred             cCCCCCeEEEEEEEcCCeeeEEEEEEEEE-eccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECCEE
Q psy16852        271 TTKKTTGKYEIRVVNEAGEARTSGSVTIT-VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDGTP  347 (579)
Q Consensus       271 ~~~~d~G~y~C~a~n~~g~~~~~~~~~v~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~~~  347 (579)
                      +..+|+|.|+|.|.|..+.......+.+. +...+.+.+.....   ..........+.|.+.|.++  +.|.|+++|..
T Consensus       316 ~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~---~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~  392 (475)
T 1iga_A          316 EPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPS---EELALNELVTLTCLARGFSPKDVLVRWLQGSQE  392 (475)
T ss_pred             HHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCCh---HHhccCCceEEEEEEeeeECCCCEEEEEECCEE
Confidence            99999999999999998875444433321 12233333221110   00112222445699988643  59999999999


Q ss_pred             ccCCCeEE--EEEC---CCCe----EEEEEcccCCCCCEEEEEEEEcCcee
Q psy16852        348 MKEGKEVT--IYQD---TDGL----CKLAISEVFPENAGLYSCTAVNPVGE  389 (579)
Q Consensus       348 ~~~~~~~~--~~~~---~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~  389 (579)
                      +.......  ...+   .+++    +.|.|.....+|.|.|+|.|.|....
T Consensus       393 l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          393 LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             CCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            87653111  1122   2222    46788888888999999999998654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=3.5e-35  Score=289.78  Aligned_cols=372  Identities=16%  Similarity=0.164  Sum_probs=228.3

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EEe----c-------------CCCCEEEEEe--CCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TEL----H-------------ATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~~----~-------------~~~~~~~~~~--~~~~~L~i   66 (579)
                      +..|.++.+.+|++++|.|.+.+.+  .+.+.|||++  ..+    .             ...++.+...  ++..+|.|
T Consensus         3 l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   82 (434)
T 1igy_B            3 LQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHL   82 (434)
T ss_dssp             EECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEE
T ss_pred             eECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEE
Confidence            3457788999999999999998753  5689999963  221    0             1234433222  23468999


Q ss_pred             cCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECCE
Q psy16852         67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKE  144 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~  144 (579)
                      .+++.+|+|.|+|.+.+..+.....+.|.|....  ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|++++.
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~  160 (434)
T 1igy_B           83 SSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  160 (434)
T ss_dssp             CSBCGGGCSEECCCCSSSSCCCCCCEECEECCSC--CBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTB
T ss_pred             CCCChHHCEEEEEEEEccccccCCceEEEEccCC--CCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCc
Confidence            9999999999999998854444445567775321  123333322222234789999999999886 665 999999886


Q ss_pred             EccCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeecc-ccCCC-CccCCCeEeccCCce
Q psy16852        145 EILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKAT-TIDKP-RVLEAPTIVRPLQAL  221 (579)
Q Consensus       145 ~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~p~~~~~~~~~  221 (579)
                      .+........... .....+.|.|.++..+| |.|+|.|.|..+.......+.+.... .+... ....+..+..++...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~  239 (434)
T 1igy_B          161 SSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPK  239 (434)
T ss_dssp             CSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHH
T ss_pred             CCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChH
Confidence            4210000000000 00012469999999889 99999999998875443333221000 00000 000122223333222


Q ss_pred             e-eCCCCeEEEEEEEEccC----CCeEEEEECCEEeccCce--------EEeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852        222 L-VPKDSTVTLEAEYTGTP----TPEVKWFKNGKEIVSKDI--------ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG  288 (579)
Q Consensus       222 ~-~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~i~~~~~--------~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g  288 (579)
                      . +.+|+.+.|.|.+.+.+    .+.+.|++++..+.....        ......+.|.|.++..+|+|.|+|.|.|..|
T Consensus       240 ~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  319 (434)
T 1igy_B          240 DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF  319 (434)
T ss_dssp             HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred             HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence            2 78899999999999874    348999999977653210        0111235699999999999999999999888


Q ss_pred             eeEEEEEEEE--EeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECCEEccCCCeEEEEECCCCe-
Q psy16852        289 EARTSGSVTI--TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDGTPMKEGKEVTIYQDTDGL-  363 (579)
Q Consensus       289 ~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~-  363 (579)
                      .......+.+  .+...+.+.+...    ....+......+.|.+.|.++  +.|+|+++|..+............++. 
T Consensus       320 ~~~~~~~v~~~~~~~~~P~v~~~~~----~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~  395 (434)
T 1igy_B          320 PAPIEKTISKTKGKPRAPQVYTIPP----PKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSY  395 (434)
T ss_dssp             SSCCCCCCCCCCSCCBCCCCEEECC----CSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCE
T ss_pred             CCceeEEEeccCCCCcCCEEEEECC----CHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcE
Confidence            6433222222  2222233322211    111112223456799998644  389999999988543221111122332 


Q ss_pred             ---EEEEEcccCCCCCEEEEEEEEcCce
Q psy16852        364 ---CKLAISEVFPENAGLYSCTAVNPVG  388 (579)
Q Consensus       364 ---~~l~i~~~~~~d~G~Y~C~a~n~~g  388 (579)
                         +.|.|.....+|+|.|+|.|.|...
T Consensus       396 ~~~s~l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          396 FVYSKLNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             EEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred             EEEEEEEECchhccCCCEEEEEEEcCCC
Confidence               3577777777889999999999864

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=100.00  E-value=1e-31  Score=250.25  Aligned_cols=269  Identities=16%  Similarity=0.176  Sum_probs=199.0

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      -+|.+...+..+.+.+|++++|.|.+.+    .+.|++++....     ..........|.|.+++.+|+|.|+|.+.+.
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   73 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW-----TLDPESPGSTLTTRNATFKNTGTYRCTELED   73 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS-----EECCCSSCCEEEESSCCGGGCEEEEEECCC-
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE-----EEeccCCccEEEEeeeccccCEEEEEEEecc
Confidence            3677777888899999999999999876    599998764321     1222334578999999999999999999988


Q ss_pred             CeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCe-EEEEE-CCEEccCCCCceEEEcCCCCe
Q psy16852         85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYR-GKEEILPDNGHTMEFNPTTGE  162 (579)
Q Consensus        85 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~-~~~~~~~~~~~~~~~~~~~~~  162 (579)
                      .+.....+.|.|...+     ..+...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+....+..+.  .   .
T Consensus        74 ~~~~~~~~~l~V~~~~-----~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~--~---~  143 (289)
T 3ejj_X           74 PMAGSTTIHLYVKDPA-----HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS--P---W  143 (289)
T ss_dssp             ----CEEEEEEECCSS-----CSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEE--T---T
T ss_pred             CCcceeEEEEEEeCCC-----cceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEEC--C---C
Confidence            8877777888886532     1244555778889999999999998766654 99987 55555444443332  1   1


Q ss_pred             EEEEECcCCCCCCeEEEEEEE-cCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCC
Q psy16852        163 CVLSISEATPQDEAVYSVKAV-NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPT  240 (579)
Q Consensus       163 ~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~  240 (579)
                      ..|.|.++..+|+|.|+|.+. +..+.......+.+...       ...+|.+...+....+.+|+.+.|.|.+.+ .|.
T Consensus       144 ~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~-------~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~  216 (289)
T 3ejj_X          144 RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV-------HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG  216 (289)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESS-------CCCCCEEEEESSSEECCSSSCEEEEEEEEESSSC
T ss_pred             CCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEEC-------CCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCc
Confidence            359999999999999999999 44444334445554311       124677777777777789999999999998 788


Q ss_pred             CeEEEEECCEEeccCceEE-----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        241 PEVKWFKNGKEIVSKDIET-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       241 ~~v~W~~~~~~i~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      +.+.|++++..+.......     ......|.|.+++.+|+|.|+|.|.|..|....++.|.+.
T Consensus       217 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~  280 (289)
T 3ejj_X          217 FNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV  280 (289)
T ss_dssp             CEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC
T ss_pred             eEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEE
Confidence            8999999999886543211     1225789999999999999999999999998888776653

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=100.00  E-value=4.1e-32  Score=252.87  Aligned_cols=263  Identities=16%  Similarity=0.204  Sum_probs=196.3

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      .-||.|...+.++.+.+|++++|.|.+.+    .+.|+++|..+    .  ..... ...|.|.+++.+|+|.|+|.+.|
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~----~--~~~~~-~~~L~i~~~~~~d~G~Y~C~~~n   78 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN----E--MVENK-KNEWIQEKAEATRTGTYTCSNSN   78 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS----C--EEEEC-SSEEEETTCCGGGCEEEEEEESS
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce----e--eecCC-CceEEEeccCHHhCeEEEEEeeC
Confidence            56899998899999999999999999976    89999999877    1  11112 27899999999999999999998


Q ss_pred             CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC-CeEEEE-ECCEEccCCCCceEEEcCCCC
Q psy16852         84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWY-RGKEEILPDNGHTMEFNPTTG  161 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~-~~~~~~~~~~~~~~~~~~~~~  161 (579)
                        |. ...+.|.|...+      ..........+.+|+.+.|.|.+.+ |. +.+.|+ +++..+....+  +.....  
T Consensus        79 --g~-~~~~~l~V~~~~------~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~--~~~~~~--  144 (290)
T 2o26_X           79 --GL-TSSIYVFVRDPA------KLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLT--FVPNPK--  144 (290)
T ss_dssp             --SC-EEEEEEEEECSS------CCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCE--EEEETT--
T ss_pred             --Cc-cEEEEEEEeCCC------cccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCc--eeeCCC--
Confidence              43 666777776532      2224455677889999999999985 77 899996 56665544322  222222  


Q ss_pred             eEEEEECcCCCCCCe-EEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC
Q psy16852        162 ECVLSISEATPQDEA-VYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP  239 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p  239 (579)
                       ..|.|.++..+|+| .|+|.+.|..+.... ...+.+..       ....+|.+...+....+.+|+.+.|.|.+.+.|
T Consensus       145 -~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~-------~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p  216 (290)
T 2o26_X          145 -AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVRE-------AIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS  216 (290)
T ss_dssp             -TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEEC-------CCCSCCEEECSCSBCCCCTTCCEEEEEEEEESS
T ss_pred             -CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEe-------CCCCCCccccCCCcceEecCCcEEEEEEEecCC
Confidence             26999999999999 999999998544322 24444431       122567776666666889999999999999999


Q ss_pred             CCe-EEEEECCEEe----ccCc---eE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        240 TPE-VKWFKNGKEI----VSKD---IE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       240 ~~~-v~W~~~~~~i----~~~~---~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      .+. +.|++++..+    ....   ..   .......|.|.++..+|+|.|+|.|.|..|.......|.|.
T Consensus       217 ~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  287 (290)
T 2o26_X          217 TSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV  287 (290)
T ss_dssp             TTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred             cceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEE
Confidence            985 9999998763    2111   11   22345789999999999999999999999988766666553

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=100.00  E-value=9.6e-32  Score=253.17  Aligned_cols=271  Identities=15%  Similarity=0.217  Sum_probs=195.5

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCC-----eeEEEECCEEe-------------cCCCCEEEEEe-----CCEEEEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLP-----TMTWQKDGTEL-------------HATEHYLITTV-----ESVSTLE   65 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~-----~v~W~~~g~~~-------------~~~~~~~~~~~-----~~~~~L~   65 (579)
                      ++..|.++.+..|++++|.|.+.+.+.+     .+.|+|+|...             ....++.....     ....+|+
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            5667889999999999999999877654     48999987532             22233322111     1246799


Q ss_pred             EcCCCCCCCEEEEEEEEc-CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECC
Q psy16852         66 IINPTKEDIGVYTCKATN-IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGK  143 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~-~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~  143 (579)
                      |.+++.+|+|.|+|++.+ ..+.....+.|.+..      +|.+........+..|+.+.+.|.+ .+.|.+.+.|++++
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~------~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~  156 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA------KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL  156 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBB------CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETT
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeecc------CCcceecccceEeecCceEEEEEEccCccCCcEEEeecCC
Confidence            999999999999999864 445666666666653      3344444445556778889999987 47789999999998


Q ss_pred             EEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEe-ccC
Q psy16852        144 EEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIV-RPL  218 (579)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~-~~~  218 (579)
                      ..+.....  . .....+    .+.|.|.....+|+|.|+|.|.|..+.......+.+.         +..+|.+. ...
T Consensus       157 ~~~~~~~~--~-~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~---------V~~~P~v~~~~~  224 (313)
T 4fqp_A          157 GGMPNTSQ--V-PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT---------VYYPPEVSISGY  224 (313)
T ss_dssp             CCEEEEEE--E-ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECC---------BCEEEEEEEECC
T ss_pred             ccccccce--e-eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecc---------cccCCccccccc
Confidence            76542211  1 111111    2468999999999999999999987765555444443         22455553 333


Q ss_pred             CceeeCCCCeEEEEEEEEccCCC-eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEE
Q psy16852        219 QALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT  297 (579)
Q Consensus       219 ~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~  297 (579)
                      ....+.+|+.++|.|.+.|+|.+ .+.|+++|..+..... ..  +..|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus       225 ~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~-~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  301 (313)
T 4fqp_A          225 DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAV-AQ--GAQLLIRPVDKPINTTLICNVTNALGARQAELTVQ  301 (313)
T ss_dssp             CSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEE-EE--TTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEE
T ss_pred             cceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceE-Ee--CCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEE
Confidence            44557788999999999999998 7999999988765432 11  24699999999999999999999999887777776


Q ss_pred             EEe
Q psy16852        298 ITV  300 (579)
Q Consensus       298 v~~  300 (579)
                      |..
T Consensus       302 V~~  304 (313)
T 4fqp_A          302 VKE  304 (313)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            653

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=1.3e-34  Score=285.61  Aligned_cols=370  Identities=14%  Similarity=0.145  Sum_probs=224.2

Q ss_pred             CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc-C-------------CCCceEEEcCCCCeEEEEECcC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL-P-------------DNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~-~-------------~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +.++.+.+|+.++|.|.+.+.+  .+.|.||+++  ..   +. .             ..+..+..+...+..+|.|.++
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (434)
T 1igy_B            6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL   85 (434)
T ss_dssp             CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred             CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence            3456788999999999998753  6789999863  21   10 0             1122221111234568999999


Q ss_pred             CCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEEC
Q psy16852        171 TPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFKN  248 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~  248 (579)
                      +.+|+|.|+|.+.+..+.......+.|...       ...+|.+........+.+|+.++|.|.+.+. |.+ .+.|+++
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~  158 (434)
T 1igy_B           86 TSDDSAVYYCVREGEVPYWGQGTTVTVSSA-------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  158 (434)
T ss_dssp             CGGGCSEECCCCSSSSCCCCCCEECEECCS-------CCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTT
T ss_pred             ChHHCEEEEEEEEccccccCCceEEEEccC-------CCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeC
Confidence            999999999999885433323334444311       1123433322222235789999999999985 776 9999999


Q ss_pred             CEEeccC---ce---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe---------ccc-eeeeeeeee
Q psy16852        249 GKEIVSK---DI---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV---------AEA-ETVMMDVRV  312 (579)
Q Consensus       249 ~~~i~~~---~~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~---------~~~-~~~~l~~~~  312 (579)
                      +..+...   ..   ......+.|.|.++..+| |.|+|.|.|..+.......+.+..         ... +.+.+....
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~  237 (434)
T 1igy_B          159 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPK  237 (434)
T ss_dssp             TBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCC
T ss_pred             CcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCC
Confidence            8753110   00   011123568999999889 999999999988754333332210         000 112111100


Q ss_pred             eccccCceeeeecCeeEEEeeeC----CCeEEEEECCEEccCCCeEEEEECC----CCeEEEEEcccCCCCCEEEEEEEE
Q psy16852        313 ESHPTASFQWFIHSEPVVVTGKP----TPLVTWSHDGTPMKEGKEVTIYQDT----DGLCKLAISEVFPENAGLYSCTAV  384 (579)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~g~p----~~~i~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~  384 (579)
                      .  ...........+.|.+.|.+    .+.+.|++++..+............    ...+.|.|.++..+|+|.|+|.|.
T Consensus       238 ~--~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  315 (434)
T 1igy_B          238 P--KDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVN  315 (434)
T ss_dssp             H--HHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBC
T ss_pred             h--HHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEE
Confidence            0  00012223344568888884    3589999999876543211111011    123479999999999999999999


Q ss_pred             cCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCC
Q psy16852        385 NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTT  462 (579)
Q Consensus       385 n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~  462 (579)
                      |..|.......+.+.  .....+|.+...+.......|+.++|.|.+.|.+++  +|.|+++|..+.....         
T Consensus       316 n~~~~~~~~~~v~~~--~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~---------  384 (434)
T 1igy_B          316 SAAFPAPIEKTISKT--KGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKN---------  384 (434)
T ss_dssp             CSSCSSCCCCCCCCC--CSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEE---------
T ss_pred             CCCCCCceeEEEecc--CCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCcee---------
Confidence            998854322222210  011235665533333223457789999999986433  8999999987732110         


Q ss_pred             CeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       463 ~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                             ......+.|.|.+.              +.|.|.....+|+|.|+|.|.|....
T Consensus       385 -------~~~~~~~~g~~~~~--------------s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          385 -------TQPIMDTDGSYFVY--------------SKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             -------CCCCCCSSSCEEEE--------------EEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             -------ccceeCCCCcEEEE--------------EEEEECchhccCCCEEEEEEEcCCCC
Confidence                   11112334555443              34889888889999999999998653

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=2.6e-29  Score=244.64  Aligned_cols=360  Identities=19%  Similarity=0.228  Sum_probs=241.8

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEecC-----CCCEEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTELHA-----TEHYLITTVESVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   78 (579)
                      +|.|.. +.+..+.+|+.++|.|.+.|.|.+.|.|+|+  |..+..     ..++.+........|.|.+++.+|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            577776 7778899999999999999999999999999  888865     45666665567889999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcC
Q psy16852         79 CKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP  158 (579)
Q Consensus        79 C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  158 (579)
                      |.|.|..|.....+.|.|..+|      .+........+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+....
T Consensus        80 C~a~n~~g~~~~~~~l~V~~~P------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~  153 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEYAP------KFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYS  153 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEE------EECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEE
T ss_pred             EEEEeCCCCcceEEEEEEEeCC------EEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEec
Confidence            9999999988888899987643      4444444456789999999999999999999999999998766543444333


Q ss_pred             CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-
Q psy16852        159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-  237 (579)
Q Consensus       159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-  237 (579)
                      ......|.|.++..+|+|.|+|.|.|..|.......+.+..        ...+|...    ......+..+.|.|.... 
T Consensus       154 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~--------~P~~P~~~----~~~~~~~~~~~l~w~~p~~  221 (389)
T 2jll_A          154 TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD--------VPSSPYGV----KIIELSQTTAKVSFNKPDS  221 (389)
T ss_dssp             CSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECC--------CCCCCEEE----EEEEECSSCEEEEEECCSC
T ss_pred             cCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecC--------CCCCCcce----EEeeccCCEEEEEEeCCCC
Confidence            44567899999999999999999999999877666555431        11222111    011234577889887422 


Q ss_pred             ---cCCC--eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEecc---ceeeeee
Q psy16852        238 ---TPTP--EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE---AETVMMD  309 (579)
Q Consensus       238 ---~p~~--~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~---~~~~~l~  309 (579)
                         .|..  .+.|.+++..... ..........+.|.++...+.|.|+|.|.|..|....+..+.+...+   .....+.
T Consensus       222 ~~g~pi~~y~v~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~~~  300 (389)
T 2jll_A          222 HGGVPIHHYQVDVKEVASEIWK-IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIH  300 (389)
T ss_dssp             CTTSCEEEEEEEEEETTCSCCE-EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCCEE
T ss_pred             CCCcceEEEEEEEEECCCcccE-EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCccc
Confidence               2222  4678776542110 01112334679999999999999999999999876555444444211   1111222


Q ss_pred             eeeeccccCceeeeecCeeEEEeeeCCC--eEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCc
Q psy16852        310 VRVESHPTASFQWFIHSEPVVVTGKPTP--LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV  387 (579)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  387 (579)
                      ..........+.|.....    .+.+..  .+.|...+..-. ....  .. ......+.|.++.....+.|+..|.|..
T Consensus       301 ~~~~~~~~v~l~W~~p~~----~~~~i~~Y~v~~~~~~~~~~-~~~~--~~-~~~~~~~~i~~L~~~t~Y~~~V~A~n~~  372 (389)
T 2jll_A          301 GQPSSGKSFKLSITKQDD----GGAPILEYIVKYRSKDKEDQ-WLEK--KV-QGNKDHIILEHLQWTMGYEVQITAANRL  372 (389)
T ss_dssp             EEEETTTEEEEEECCCCC----CSSCCCEEEEEEEC-----C-CBCC--EE-CTTCCEEEECSCCTTCEEEEEEEEEC-C
T ss_pred             cccCcCCEEEEEEECCCC----CCCcccEEEEEEEeCCCCcc-eeEe--ec-cCCcceEEeCCcCCCCEEEEEEEEEcCC
Confidence            222334445566653210    111222  222322111000 0000  01 1122368889999999999999999999


Q ss_pred             eeEEEE
Q psy16852        388 GEAVAA  393 (579)
Q Consensus       388 g~~~~~  393 (579)
                      |.+..+
T Consensus       373 G~s~~s  378 (389)
T 2jll_A          373 GYSEPT  378 (389)
T ss_dssp             CBCCCE
T ss_pred             cCCCce
Confidence            976554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.9e-31  Score=244.63  Aligned_cols=250  Identities=15%  Similarity=0.240  Sum_probs=193.1

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      +|.|...|.++.+.+|+.++|.|.+.+.|.+ .+.|+++|..+....          ..|.|.+++.+|+|.|+|.+.+.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~----------~~l~i~~~~~~d~G~Y~C~~~~~   70 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSYRITSASVNDSGEYRCQRGLS   70 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEESSS
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC----------CeEEEecCCcccCeEEEEEEecC
Confidence            5889999999999999999999999888877 999999999886542          57999999999999999999876


Q ss_pred             CeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852         85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC  163 (579)
Q Consensus        85 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  163 (579)
                      .+..  .+.+.|...      + +...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....          ...
T Consensus        71 ~~s~--~~~l~v~~~------~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~----------~~~  131 (262)
T 3rjd_A           71 GRSD--PIQLEIHRG------W-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH----------WNS  131 (262)
T ss_dssp             CCCC--CEEEEEECS------S-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE----------ECC
T ss_pred             Cccc--cEEEEEecc------c-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC----------CCC
Confidence            5543  455666532      2 2223345567899999999999 677788999999988763211          123


Q ss_pred             EEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC-C-
Q psy16852        164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT-P-  241 (579)
Q Consensus       164 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~-  241 (579)
                      .|.|.+++.+|+|.|+|.+.+..+.......+.+...        ..+|.+...+ ...+.+|+.+.|.|.+.+.|. + 
T Consensus       132 ~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~--------~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~  202 (262)
T 3rjd_A          132 NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL--------FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPG  202 (262)
T ss_dssp             CEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS--------SCCCEEEESS-CSSEETTCCEEEEEECCCCCC---
T ss_pred             eEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC--------CCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCC
Confidence            6999999999999999999999876666666666521        1345554444 445788999999999998775 4 


Q ss_pred             ---eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeee-EEEEEEEE
Q psy16852        242 ---EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA-RTSGSVTI  298 (579)
Q Consensus       242 ---~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~-~~~~~~~v  298 (579)
                         .+.|++++..+...     .....|.|.++..+|+|.|+|.|.|..|.. ..+..+.|
T Consensus       203 ~~~~~~w~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l  258 (262)
T 3rjd_A          203 LQLYFSFYMGSKTLRGR-----NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL  258 (262)
T ss_dssp             --EEEEEEETTEEEEEE-----ESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEE
T ss_pred             ccEEEEEEeCCcEeccc-----CCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEE
Confidence               37899999887532     344679999999999999999999999864 33334433

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.98  E-value=6.2e-32  Score=256.08  Aligned_cols=260  Identities=15%  Similarity=0.135  Sum_probs=191.4

Q ss_pred             ccCceeeeCCCCEEEEEEEEee---------CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCE-EEEEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGH---------PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIG-VYTCKA   81 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~---------~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~   81 (579)
                      ....+.+.+|+++.|.|.+.+.         |.+.+.|||+|..+....+.   ..  ...|.|.+++.+|+| .|+|.|
T Consensus        35 ~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~---~~--~~~L~i~~v~~~D~Gs~Y~C~a  109 (329)
T 3oq3_B           35 GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR---VK--NGDLWIANYTSNDSHRRYLCTV  109 (329)
T ss_dssp             EEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT---EE--TTEEEESSCCGGGGGCCEEEEE
T ss_pred             CcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce---ee--cceEEEcCCChHhCCCcEEEEE
Confidence            3467889999999999999774         45789999999877543332   11  357999999999999 999999


Q ss_pred             EcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852         82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTT  160 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~  160 (579)
                      .|..|.........+...     +|.+........+.+|+.+.|.|.+.+.| .+.+.|++++..+..... .+...   
T Consensus       110 ~n~~g~~~~~~~~~v~~~-----~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~-~~~~~---  180 (329)
T 3oq3_B          110 TTKNGDCVQGIVRSHIRK-----PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-KYSQS---  180 (329)
T ss_dssp             ECTTSCEEEEEEEEEECC-----CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSS-SEEEE---
T ss_pred             EeCCCceeeEEEEEEEcC-----CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCc-eEecC---
Confidence            998876554444444433     23333322233456799999999999999 899999999998854332 22222   


Q ss_pred             CeEEEEECcCCCCCCeEEEEEEEcC--CceeEEE----EEEEEeeccccCCCCccCCC----eEeccCCceeeCCCCeEE
Q psy16852        161 GECVLSISEATPQDEAVYSVKAVNT--FGRAECR----ANLVLRKATTIDKPRVLEAP----TIVRPLQALLVPKDSTVT  230 (579)
Q Consensus       161 ~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~----~~~~v~~~~~~~~~~~~~~p----~~~~~~~~~~~~~g~~~~  230 (579)
                       ...|.|.+++.+|+|.|+|.+.|.  .|.....    ..+.+.           .+|    .+. .+....+.+|+.+.
T Consensus       181 -~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~-----------~~~~~~~~~~-~~~~~~v~~G~~~~  247 (329)
T 3oq3_B          181 -GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVI-----------PSQDHRFKLI-LDPKINVTIGEPAN  247 (329)
T ss_dssp             -TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEE-----------CCCCCCEEEE-CCSEEEECTTSCEE
T ss_pred             -CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEE-----------CCCCCCCcee-cCCeeEEecCCCEE
Confidence             147999999999999999999986  5443332    334443           222    222 45557789999999


Q ss_pred             EEEEEEccC---CC-eEEEEECCEEecc-CceEE-----eC--CeEEEEEcccCCCCCe-EEEEEEEcCCeeeEEEEEEE
Q psy16852        231 LEAEYTGTP---TP-EVKWFKNGKEIVS-KDIET-----KD--NVTKLVIKQTTKKTTG-KYEIRVVNEAGEARTSGSVT  297 (579)
Q Consensus       231 l~C~~~~~p---~~-~v~W~~~~~~i~~-~~~~~-----~~--~~~~l~i~~~~~~d~G-~y~C~a~n~~g~~~~~~~~~  297 (579)
                      |.|.+.+.|   .+ .+.|+++|..+.. .....     ..  ....|.|.+++.+|+| .|+|.|.|..|....++.+.
T Consensus       248 l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~  327 (329)
T 3oq3_B          248 ITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV  327 (329)
T ss_dssp             EEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEE
Confidence            999999987   67 8999999987532 22111     11  4578999999999999 99999999999888777666


Q ss_pred             E
Q psy16852        298 I  298 (579)
Q Consensus       298 v  298 (579)
                      |
T Consensus       328 v  328 (329)
T 3oq3_B          328 L  328 (329)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.98  E-value=1.9e-31  Score=264.03  Aligned_cols=344  Identities=13%  Similarity=0.145  Sum_probs=208.3

Q ss_pred             eecCCCceEEccCCcEEEEEEEEeecC----CeEEEEECC--EEc---c-------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852        108 FTKPLKPVIAEAQSPATLKATVTGRPT----PSICWYRGK--EEI---L-------PDNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       108 ~~~~~~~~~~~~g~~~~l~C~~~~~p~----~~i~W~~~~--~~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      +...+..+.+.+|+.++|.|.+.+.+.    +.+.||+++  ..+   .       .....++......+...|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE   83 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence            334456778899999999999987765    489999963  211   0       111122222223456789999999


Q ss_pred             CCCCeEEEEEEEcCCcee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEEC
Q psy16852        172 PQDEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKN  248 (579)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~  248 (579)
                      .+|+|.|+|.+.+..+.. .....+.+..        ...+|.+..........+|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus        84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~--------~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~  155 (438)
T 1qgc_4           84 ADDVATYYCQQSNEVPLTFGAGTKLDLKR--------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID  155 (438)
T ss_dssp             GGGCEEEEEEECSSTTCCBCCCEEEEECC--------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CcCCeeEEEEEecCCCccccCceeEEecC--------CCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEEC
Confidence            999999999999987632 2223444431        113555544333223345889999999987 6777 8999999


Q ss_pred             CEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCee
Q psy16852        249 GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEP  328 (579)
Q Consensus       249 ~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  328 (579)
                      |..+.....         ..........|.|..                                               
T Consensus       156 g~~~~~~~~---------~~~~~~~~~~~~~~~-----------------------------------------------  179 (438)
T 1qgc_4          156 GSERQNGVL---------NSWTDQDSKDSTYSM-----------------------------------------------  179 (438)
T ss_dssp             TEEECTTEE---------EEEECCCTTTCCEEE-----------------------------------------------
T ss_pred             CEEcCCCce---------eccccccCCCCcEEE-----------------------------------------------
Confidence            988754310         000001111111110                                               


Q ss_pred             EEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCC
Q psy16852        329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAP  408 (579)
Q Consensus       329 ~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p  408 (579)
                                                        .+.|.|.++..+|+|.|+|.|.|..+....  .+.+...    .++
T Consensus       180 ----------------------------------~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~--~~~~~~~----~~~  219 (438)
T 1qgc_4          180 ----------------------------------SSTLTLTKDEYERHNSYTCEATHKTSTSPI--VKSFNRN----ECE  219 (438)
T ss_dssp             ----------------------------------EEEEEEEHHHHHTCCEEEEEEEETTCSSCE--EEEEETT----C-C
T ss_pred             ----------------------------------EEEEEEeCcccCCCCeEEEEEEecccCCce--ecccccc----cce
Confidence                                              015777778888889999999888776422  2222211    122


Q ss_pred             eeecCCCceeeecCCCeEEEEEEEeeC--CCeEEEeeC--CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        409 KFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRG--KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       409 ~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~--~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      .....+....+.+|+.++|.|.+.|.|  .+.+.|+++  +..+.    ..+.....++..     .......++|    
T Consensus       220 ~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~----~~~~~~~~~~~~-----~~~~~~~~r~----  286 (438)
T 1qgc_4          220 VMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLE----WVATISSGGTYT-----YYPDSVKGRF----  286 (438)
T ss_dssp             CEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEE----EEEEECTTSCCE-----ECCGGGTTTE----
T ss_pred             eEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcE----EEEEEeecCCce-----ecCcccCCcE----
Confidence            223334556789999999999999988  679999996  33221    000000000000     0000111222    


Q ss_pred             ecceeeeeee--CCeeEEEEeecccccceeEEEEEEeCCe-----eEEEEEEEEEeeCCcccccccCCccccCCCceEEe
Q psy16852        485 SSTETKIMTD--GNRSVLLISKITRDQIGDVTCRAENVAG-----SVTCTATLSLLPESEVTDVMESPRFIKTPETAKVM  557 (579)
Q Consensus       485 ~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~  557 (579)
                           .+..+  .....|.|.+++.+|+|.|+|.|.|..|     .....+.|.|...     ...+|.+...+....+.
T Consensus       287 -----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~-----~~~~P~v~~~~~~~~~~  356 (438)
T 1qgc_4          287 -----TISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAA-----KTTPPSVYPLAPGSAAA  356 (438)
T ss_dssp             -----EEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSS-----CCBCCEEEEECCCGGGC
T ss_pred             -----EEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecC-----CCCCCeEEEcCcccccc
Confidence                 12222  3456799999999999999999999544     2223456666421     23466665554445577


Q ss_pred             cCCcEEEEEEeccc-eee-cccc
Q psy16852        558 DGQSVLFTAQVGYS-ERL-EIPL  578 (579)
Q Consensus       558 ~g~~~~l~C~~~~~-~~~-~~~~  578 (579)
                      .|++++|.|.+.+. |.+ .|.|
T Consensus       357 ~g~~v~L~C~~~g~~P~~~~v~W  379 (438)
T 1qgc_4          357 AASMVTLGCLVKGYFPEPVTVTW  379 (438)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEE
T ss_pred             cCCcEEEEEEeccccCCCcEEEE
Confidence            89999999999876 654 7766

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.98  E-value=9.3e-33  Score=260.62  Aligned_cols=272  Identities=18%  Similarity=0.215  Sum_probs=199.0

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeC-CCeeEEEECCEEecC--CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKDGTELHA--TEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      ....+.+.+|+.++|.|.+.+.+ .+.|.|+|+|..+..  ....++....  ..|.|.+++.+|+|.|+|.+.|..|..
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~   88 (315)
T 1itb_B           11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCL   88 (315)
T ss_dssp             CCCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECS--SBEECTTCCGGGCSCCEECCCSSSCCC
T ss_pred             CceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccC--CeEEECCCChhhCEEEEEEEeCCceEE
Confidence            34468899999999999998877 679999999875432  1111222222  479999999999999999999988876


Q ss_pred             EEEEEEEEEecccCCCCCceecC---CCceEEccCCcEEEEEEE------EeecCCeEEEEECCEEccCCCCceEEEcCC
Q psy16852         89 TCSANLIVLEKEESGEAPKFTKP---LKPVIAEAQSPATLKATV------TGRPTPSICWYRGKEEILPDNGHTMEFNPT  159 (579)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~g~~~~l~C~~------~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  159 (579)
                      .....+.+...     +|.+...   .....+.+|+.+.|.|.+      .+.|.+.+.|++++..+..........   
T Consensus        89 ~~~~~v~v~~~-----~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~---  160 (315)
T 1itb_B           89 RIKISAKFVEN-----EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV---  160 (315)
T ss_dssp             CEECCCEEECC-----CTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEE---
T ss_pred             EEEEEEEEeCC-----CCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeec---
Confidence            66666665432     2222211   123567889999999998      788889999999999986543322222   


Q ss_pred             CCeEEEEECcCCCCCCeEEEEEEE-cCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCc-eeeCCCCeEEEEEEEE
Q psy16852        160 TGECVLSISEATPQDEAVYSVKAV-NTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQA-LLVPKDSTVTLEAEYT  236 (579)
Q Consensus       160 ~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~  236 (579)
                        ...|.|.+++.+|+|.|+|.+. +..|.... ...+.+....    .....+|.+..++.. ..+.+|+.+.|.|.+.
T Consensus       161 --~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~----~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~  234 (315)
T 1itb_B          161 --KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLE----ENKPTRPVIVSPANETMEVDLGSQIQLICNVT  234 (315)
T ss_dssp             --TTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC----CCCCCCCEECSCCSEEEECCSSSCEEEEEEEE
T ss_pred             --CceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEec----CCCCCCCEEecCCCCcEEEeCCCcEEEEEEEe
Confidence              1379999999999999999999 67776532 2222221110    011246666655543 4688999999999999


Q ss_pred             ccCCCeEEEEECCEEeccCce-------EEe--------CCeEEEEEcccCCCC-CeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        237 GTPTPEVKWFKNGKEIVSKDI-------ETK--------DNVTKLVIKQTTKKT-TGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       237 ~~p~~~v~W~~~~~~i~~~~~-------~~~--------~~~~~l~i~~~~~~d-~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      |.|.+.+.|+++|..+.....       ...        .....|.|.++..+| +|.|+|.|.|..|....++.|.|.
T Consensus       235 g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          235 GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             ECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             cCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            999999999999999876431       000        123589999999999 999999999999998887777653

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.98  E-value=4e-29  Score=250.52  Aligned_cols=377  Identities=14%  Similarity=0.164  Sum_probs=226.8

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC----CeeEEEEC--CEE---ec-------------CCCCEEEEEe--CCEEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL----PTMTWQKD--GTE---LH-------------ATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~--g~~---~~-------------~~~~~~~~~~--~~~~~L~i   66 (579)
                      ..|..+.+.+|++++|.|.+.+.+.    ..+.|||.  |..   +.             ...++.+...  ....+|+|
T Consensus         5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (512)
T 1zvo_C            5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL   84 (512)
T ss_pred             ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEE
Confidence            4578899999999999999986543    57999995  221   10             1234444332  34689999


Q ss_pred             cCCCCCCCEEEEEEEEcCCe-----------e--eEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee
Q psy16852         67 INPTKEDIGVYTCKATNIGG-----------V--ATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR  132 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g-----------~--~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~  132 (579)
                      .+++.+|+|.|+|.+.+..+           .  ....+.|.|...+  ..+|.+.. .+.......|+.++|.|.+.+.
T Consensus        85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~  162 (512)
T 1zvo_C           85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAP--TKAPDVFPIISGCRHPKDNSPVVLACLITGY  162 (512)
T ss_pred             CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccC--CcCCeEEeccCCcccccCCCeEEEEEEEEee
Confidence            99999999999999987642           1  1234566775432  12333331 1111101246899999999886


Q ss_pred             -cCC-eEEEEECCEEccCCCCceEEEcCC---CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEE-----------EEE
Q psy16852        133 -PTP-SICWYRGKEEILPDNGHTMEFNPT---TGECVLSISEATPQDEAVYSVKAVNTFGRAECRA-----------NLV  196 (579)
Q Consensus       133 -p~~-~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~-----------~~~  196 (579)
                       |.+ .|+|++++...... .........   ...+.|.|.....+ .|.|+|.|.|..+......           .+.
T Consensus       163 ~P~p~~v~W~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~  240 (512)
T 1zvo_C          163 HPTSVTVTWYMGTQSQPQR-TFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSV  240 (512)
T ss_pred             ecCceEEEEEcCcccCceE-ecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEE
Confidence             654 99999965431100 000000100   11246888888777 9999999999887655443           122


Q ss_pred             Eeecccc-C---------------------------------C-------CCccCCCeE-eccCCceeeCCCCeEEEEEE
Q psy16852        197 LRKATTI-D---------------------------------K-------PRVLEAPTI-VRPLQALLVPKDSTVTLEAE  234 (579)
Q Consensus       197 v~~~~~~-~---------------------------------~-------~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~  234 (579)
                      +...... .                                 .       +....+|.+ ..++....+.+|+.++|.|.
T Consensus       241 l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~  320 (512)
T 1zvo_C          241 PTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCF  320 (512)
T ss_pred             EeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEE
Confidence            2110000 0                                 0       001123443 23333334668999999999


Q ss_pred             EEcc-CC-CeEEEEECCEEeccCc----eE-----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe---
Q psy16852        235 YTGT-PT-PEVKWFKNGKEIVSKD----IE-----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV---  300 (579)
Q Consensus       235 ~~~~-p~-~~v~W~~~~~~i~~~~----~~-----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~---  300 (579)
                      +.+. |+ ..+.|+++|..+....    ..     .....+.|.|.....+|.|.|+|.|.|..+... ...+....   
T Consensus       321 v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~  399 (512)
T 1zvo_C          321 VVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQ  399 (512)
T ss_pred             EeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCC
Confidence            9985 43 3999999998865221    00     111235689999999999999999999877543 22222211   


Q ss_pred             -ccceeeeeeeeeeccccCceeeeecC-eeEEEeeeCCC--eEEEEECCEEccCCCeE--EEEECCCCe-----EEEEEc
Q psy16852        301 -AEAETVMMDVRVESHPTASFQWFIHS-EPVVVTGKPTP--LVTWSHDGTPMKEGKEV--TIYQDTDGL-----CKLAIS  369 (579)
Q Consensus       301 -~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~g~p~~--~i~W~~~~~~~~~~~~~--~~~~~~~~~-----~~l~i~  369 (579)
                       ...+.+.+.....       ...... +.|.+.|++++  .+.|+++|.++......  ....+.+++     +.|.|.
T Consensus       400 ~~~~p~v~~~~~~~-------~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~  472 (512)
T 1zvo_C          400 APVKLSLNLLASSD-------PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVP  472 (512)
T ss_pred             CCCCCEEEEEccCc-------CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEEC
Confidence             1222333221111       122234 56999986543  68999999998765321  122334443     467788


Q ss_pred             ccCCCCCEEEEEEEEcCceeEE--EEEEEEEE
Q psy16852        370 EVFPENAGLYSCTAVNPVGEAV--AAATLAVE  399 (579)
Q Consensus       370 ~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~  399 (579)
                      ....+|.|.|+|.|.|......  ....+.|.
T Consensus       473 ~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~  504 (512)
T 1zvo_C          473 APPSPQPATYTCVVSHEDSRTLLNASRSLEVS  504 (512)
T ss_pred             chhcCCCCeEEEEEEecCCCCceEEEEEEEec
Confidence            7777889999999999866433  33344443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=5.2e-29  Score=249.68  Aligned_cols=377  Identities=18%  Similarity=0.197  Sum_probs=223.3

Q ss_pred             CCceEEccCCcEEEEEEEEeecC----CeEEEEECC--EE---cc-------------CCCCceEEEcCCCCeEEEEECc
Q psy16852        112 LKPVIAEAQSPATLKATVTGRPT----PSICWYRGK--EE---IL-------------PDNGHTMEFNPTTGECVLSISE  169 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p~----~~i~W~~~~--~~---~~-------------~~~~~~~~~~~~~~~~~l~i~~  169 (579)
                      +..+.+.+|+.++|.|.+.+.+.    ..+.||+..  ..   +.             ...++.+..+...+..+|.|.+
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (512)
T 1zvo_C            7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS   86 (512)
T ss_pred             CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence            45677889999999999976543    689999852  21   10             0123333333344568999999


Q ss_pred             CCCCCCeEEEEEEEcCCc-----------e--eEEEEEEEEeeccccCCCCccCCCeEec-cCCceeeCCCCeEEEEEEE
Q psy16852        170 ATPQDEAVYSVKAVNTFG-----------R--AECRANLVLRKATTIDKPRVLEAPTIVR-PLQALLVPKDSTVTLEAEY  235 (579)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~~~v~~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~  235 (579)
                      ++.+|+|.|+|.+.+..+           .  ......+.|...       ...+|.+.. .+.......++.+.|.|.+
T Consensus        87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~i~~~~~~~~~~~~~~~v~L~C~~  159 (512)
T 1zvo_C           87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSA-------PTKAPDVFPIISGCRHPKDNSPVVLACLI  159 (512)
T ss_pred             CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEeccc-------CCcCCeEEeccCCcccccCCCeEEEEEEE
Confidence            999999999999987642           0  011233444311       012343331 1111102246899999999


Q ss_pred             Ecc-CCC-eEEEEECCEEec--cCc-eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEE-----------E
Q psy16852        236 TGT-PTP-EVKWFKNGKEIV--SKD-IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG-----------S  295 (579)
Q Consensus       236 ~~~-p~~-~v~W~~~~~~i~--~~~-~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~-----------~  295 (579)
                      .+. |.+ .+.|++++....  ... ..    .....+.|.|.....+ .|.|+|.|.|..+......           .
T Consensus       160 ~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~  238 (512)
T 1zvo_C          160 TGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQAS  238 (512)
T ss_pred             EeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCE
Confidence            986 765 899999764321  000 00    1112356888888777 9999999999888765444           2


Q ss_pred             EEEEeccc--------------------------------------------------eeeeeeeeeeccccC-ceeeee
Q psy16852        296 VTITVAEA--------------------------------------------------ETVMMDVRVESHPTA-SFQWFI  324 (579)
Q Consensus       296 ~~v~~~~~--------------------------------------------------~~~~l~~~~~~~~~~-~~~~~~  324 (579)
                      +.|.+.+.                                                  +.+.+    ...... ......
T Consensus       239 v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~----~~p~~~~~~~g~~  314 (512)
T 1zvo_C          239 SVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYL----LTPAVQDLWLRDK  314 (512)
T ss_pred             EEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEE----ECCChHHhccCCc
Confidence            23322111                                                  11111    110101 112344


Q ss_pred             cCeeEEEeeeCC--CeEEEEECCEEccCCCeE-EEEECCCCe----EEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEE
Q psy16852        325 HSEPVVVTGKPT--PLVTWSHDGTPMKEGKEV-TIYQDTDGL----CKLAISEVFPENAGLYSCTAVNPVGEAVAAATLA  397 (579)
Q Consensus       325 ~~~~~~~~g~p~--~~i~W~~~~~~~~~~~~~-~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  397 (579)
                      ..+.|.+.|+++  ..|+|+++|..+...... ......+++    +.|.|.....+|.|.|+|.|.|..+... ...+.
T Consensus       315 ~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~  393 (512)
T 1zvo_C          315 ATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMAL  393 (512)
T ss_pred             eEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEE
Confidence            566799988744  399999999986622111 112222332    4699999999999999999999877543 22222


Q ss_pred             EEecccCCCCCeeecCCCceeeecCCCeE-EEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccC
Q psy16852        398 VEEKEESGEAPKFTKPLKPVIAEAQSPAT-LKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP  474 (579)
Q Consensus       398 v~~~~~~~~~p~~~~~~~~~~~~~g~~~~-l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~  474 (579)
                      .........+|.+...+...   .|+.+. |.|.+.|++++  .|.|+|+|..+..+.....              ....
T Consensus       394 ~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~--------------~~~~  456 (512)
T 1zvo_C          394 REPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPA--------------RPPP  456 (512)
T ss_pred             eecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCcccccc--------------ceeE
Confidence            21100001245554322222   789999 99999986554  6899999998865321100              0011


Q ss_pred             CCcee-EEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        475 QDEAV-YSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       475 ~d~g~-y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ...|. |..              .+.|.|.....+|.|.|+|.|.|........+...+
T Consensus       457 ~~dg~~~~~--------------~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~  501 (512)
T 1zvo_C          457 QPGSTTFWA--------------WSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSL  501 (512)
T ss_pred             CCCCCEEEE--------------EEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEE
Confidence            11121 322              234888888888899999999999765444444443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=9.9e-33  Score=263.29  Aligned_cols=277  Identities=19%  Similarity=0.259  Sum_probs=207.6

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEE-------eeCCCeeEEEECCEEe--cCCCCEEEEEeCCEEEEEEcCCCCCCCE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVE-------GHPLPTMTWQKDGTEL--HATEHYLITTVESVSTLEIINPTKEDIG   75 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~-------~~~~~~v~W~~~g~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G   75 (579)
                      -.|.|...|.++.+.+|++++|.|.+.       +.|.+.|.|+++|..+  ......++....  ..|.|.+++.+|+|
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G   94 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQD--GALWLLPALQEDSG   94 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEET--TEEEESSBCTTCCE
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeC--CeEEECCCCcccCE
Confidence            468899999999999999999999997       7888899999999874  333233333333  47999999999999


Q ss_pred             EEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEE-----EEeecCCeEEEEECCEEccCCC
Q psy16852         76 VYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT-----VTGRPTPSICWYRGKEEILPDN  150 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~i~W~~~~~~~~~~~  150 (579)
                      .|+|.+.|..|.....+.|.|...+..    .......+..+.+|+.+.|.|.     +.+.|.+.+.|++++..+....
T Consensus        95 ~Y~C~~~n~~g~~~~~~~l~V~~~~~~----~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~  170 (339)
T 3o4o_C           95 TYVCTTRNASYCDKMSIELRVFENTDA----FLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN  170 (339)
T ss_dssp             EEECCEEETTEEEEEEEEEEEECSCGG----GHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTC
T ss_pred             EEEEEEECCcceEEEEEEEEEEcCCCc----cccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCC
Confidence            999999999998888888888764321    1111223346789999999999     7888999999999998876543


Q ss_pred             CceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCce----eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCC
Q psy16852        151 GHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR----AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD  226 (579)
Q Consensus       151 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g  226 (579)
                      .. +....  +...|.|.++..+|+|.|+|.+.|..|.    ......+.+....      ...+|.+..++....+.+|
T Consensus       171 ~~-~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~------~~~~P~i~~~~~~~~v~~G  241 (339)
T 3o4o_C          171 EK-FLSVR--GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK------EETIPVIISPLKTISASLG  241 (339)
T ss_dssp             SS-EEECT--TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC------CCCCCEECCCSCCCCCCCC
T ss_pred             ce-eEEcC--CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC------CCCCCEEecCCceeEeccC
Confidence            32 22222  2247999999999999999999998773    3444555554211      1135666666666678899


Q ss_pred             CeEEEEEEE---EccC-CCeEEEEECCEEeccCc----------eEEe-CC----eEEEEEcccCCCCC-eEEEEEEEcC
Q psy16852        227 STVTLEAEY---TGTP-TPEVKWFKNGKEIVSKD----------IETK-DN----VTKLVIKQTTKKTT-GKYEIRVVNE  286 (579)
Q Consensus       227 ~~~~l~C~~---~~~p-~~~v~W~~~~~~i~~~~----------~~~~-~~----~~~l~i~~~~~~d~-G~y~C~a~n~  286 (579)
                      +.+.|.|.+   .+.| .+.+.|++++..+....          .... .+    ...|.|.++..+|. |.|+|.|.|.
T Consensus       242 ~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~  321 (339)
T 3o4o_C          242 SRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNT  321 (339)
T ss_dssp             SCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEET
T ss_pred             CCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEec
Confidence            999999999   7888 77999999997764321          1111 11    12799999999997 9999999999


Q ss_pred             CeeeEEEEEE
Q psy16852        287 AGEARTSGSV  296 (579)
Q Consensus       287 ~g~~~~~~~~  296 (579)
                      .|.....+.+
T Consensus       322 ~G~~~~~~~~  331 (339)
T 3o4o_C          322 LSFQTLRTTV  331 (339)
T ss_dssp             TEEECCBCCC
T ss_pred             cCceEEEEEh
Confidence            9987655444

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.97  E-value=1e-31  Score=255.52  Aligned_cols=274  Identities=16%  Similarity=0.214  Sum_probs=191.9

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEee----CCCeeEEEECC--EE-------------e--cCCCCEEEE-EeCCEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGH----PLPTMTWQKDG--TE-------------L--HATEHYLIT-TVESVST   63 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~----~~~~v~W~~~g--~~-------------~--~~~~~~~~~-~~~~~~~   63 (579)
                      |+.++..|.++.+.+|++++|.|.+.+.    +.+.+.|++++  ..             +  ....++.+. ......+
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   93 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT   93 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence            5556677888999999999999998775    34579999954  11             1  112233222 1223567


Q ss_pred             EEEcCCCCCCCEEEEEE-EEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccC---CcEEEEEE-EEeecCCeEE
Q psy16852         64 LEIINPTKEDIGVYTCK-ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ---SPATLKAT-VTGRPTPSIC  138 (579)
Q Consensus        64 L~i~~~~~~d~G~Y~C~-~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g---~~~~l~C~-~~~~p~~~i~  138 (579)
                      |.|.+++.+|+|.|+|. +.+..+.....+.+.|...+.    ..+........+.+|   +.+.|.|. ..+.|.+.+.
T Consensus        94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~----~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~  169 (331)
T 3u83_A           94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPT----NWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVS  169 (331)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCE----EEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEE
T ss_pred             EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCc----ceeecCCCceeecCCCccceEEEEEEecCCcCCceEE
Confidence            99999999999999998 556667777888888876421    112224556677788   77999998 7889999999


Q ss_pred             EEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeE
Q psy16852        139 WYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTI  214 (579)
Q Consensus       139 W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~  214 (579)
                      |++++.....    .......++    ...|.|..+..+|+|.|+|.+.|..+.......+.+.           .+|.+
T Consensus       170 W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~-----------~~P~~  234 (331)
T 3u83_A          170 WETRLKGEAE----YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ-----------YEPEV  234 (331)
T ss_dssp             EEESSCCEEE----EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEE-----------EEEEE
T ss_pred             EEcCCCCccc----cceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEe-----------cCCeE
Confidence            9995321110    000000111    2469999999999999999999998876665555543           34444


Q ss_pred             e-ccCCceeeCCCCeEEEEEEEEccCCCe-EEEEECCEEeccCceEEeCCeEEEEEc-ccCCCCCeEEEEEEEcCCeeeE
Q psy16852        215 V-RPLQALLVPKDSTVTLEAEYTGTPTPE-VKWFKNGKEIVSKDIETKDNVTKLVIK-QTTKKTTGKYEIRVVNEAGEAR  291 (579)
Q Consensus       215 ~-~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~i~~~~~~~~~~~~~l~i~-~~~~~d~G~y~C~a~n~~g~~~  291 (579)
                      . .+.....+.+|+.+.|.|.+.+.|.+. +.|++++..+.... ..  ....|.|. ++..+|+|.|+|.|.|..|...
T Consensus       235 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~-~~--~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~  311 (331)
T 3u83_A          235 TIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV-EA--QNRTLFFKGPINYSLAGTYICEATNPIGTRS  311 (331)
T ss_dssp             EEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE-EE--ETTEEEECSCCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc-ee--cCcEEEEeCCCccccCeEEEEEEEeccccce
Confidence            3 333445588899999999999999997 99999998776542 11  22469999 8999999999999999999887


Q ss_pred             EEEEEEEEec
Q psy16852        292 TSGSVTITVA  301 (579)
Q Consensus       292 ~~~~~~v~~~  301 (579)
                      .++.|.|...
T Consensus       312 ~~~~l~V~~~  321 (331)
T 3u83_A          312 GQVEVNITEA  321 (331)
T ss_dssp             EEEEECCBC-
T ss_pred             EEEEEEEecc
Confidence            7776666533

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=8.8e-31  Score=248.23  Aligned_cols=270  Identities=15%  Similarity=0.232  Sum_probs=181.6

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEec---------CCCCEEEEEe-----CCEEEEEEcCCCC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELH---------ATEHYLITTV-----ESVSTLEIINPTK   71 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~---------~~~~~~~~~~-----~~~~~L~i~~~~~   71 (579)
                      ..|+..|.++.+.+|++++|.|.+.+. |.+.|.|||++....         ...++.....     .....|.|.+++.
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            457778899999999999999999887 778999999875321         0112222111     3456899999999


Q ss_pred             CCCEEEEEEEEcCCeee-----EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC--eEEEEECCE
Q psy16852         72 EDIGVYTCKATNIGGVA-----TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKE  144 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~g~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~  144 (579)
                      +|+|.|+|.+.|..+..     ...+.|.|...+   .+|.+. .+ ...+.+|+.+.|.|.+.+.|++  .+.|++++.
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p---~~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~  158 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKP---SAPVVS-GP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGN  158 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCC---CCCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecC---CCceee-cc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCE
Confidence            99999999999876531     134677777653   233343 22 3557889999999999988875  999999998


Q ss_pred             EccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCcee-EEEEEEEEeeccccCCCCccCCCeEeccCC
Q psy16852        145 EILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQ  219 (579)
Q Consensus       145 ~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~  219 (579)
                      .+..... .......++    ...|.|.....+|.|.|+|.+.|..+.. .......+..       .+..+|.+...+.
T Consensus       159 ~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~-------~v~~~P~i~~~~~  230 (327)
T 2wng_A          159 ELSDFQT-NVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSE-------TIRVPPTLEVTQQ  230 (327)
T ss_dssp             ECCCEEE-EEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGG-------TBCBCCEEEEEEE
T ss_pred             Ecccccc-ccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEecc-------ccCCCCEEEEecC
Confidence            8764321 111111111    2357788777778899999999987652 2222222211       1235666654433


Q ss_pred             ceeeCCCCeEEEEEEEEcc-CCC-eEEEEECCEEeccCc---eEEeC-C----eEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        220 ALLVPKDSTVTLEAEYTGT-PTP-EVKWFKNGKEIVSKD---IETKD-N----VTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       220 ~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~i~~~~---~~~~~-~----~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      .  +.+|+.+.|.|.+.+. |++ .+.|+++|+.+....   ..... +    ...|.|..+..+|+|.|+|.|.|..+.
T Consensus       231 ~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~  308 (327)
T 2wng_A          231 P--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQP  308 (327)
T ss_dssp             C--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCC
T ss_pred             C--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCC
Confidence            3  7789999999999985 444 899999999886431   11111 1    256889999999999999999999986


Q ss_pred             eE
Q psy16852        290 AR  291 (579)
Q Consensus       290 ~~  291 (579)
                      ..
T Consensus       309 ~~  310 (327)
T 2wng_A          309 AV  310 (327)
T ss_dssp             CE
T ss_pred             Cc
Confidence            54

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=1.4e-32  Score=261.76  Aligned_cols=286  Identities=21%  Similarity=0.291  Sum_probs=135.1

Q ss_pred             CCceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852        218 LQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV  296 (579)
Q Consensus       218 ~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~  296 (579)
                      +....+.+|+.+.|.|.+.+. |.+.+.|+++|..+..... .......|.|.+++.+|+|.|+|.|.|. |.....+.+
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l   92 (334)
T 1ry7_B           15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSER-VLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSV   92 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCccc-EEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEEE
Confidence            556678899999999999886 5679999999988865431 1224568999999999999999999998 665555555


Q ss_pred             EEEeccce-------------------eeeeeee-eeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEE
Q psy16852        297 TITVAEAE-------------------TVMMDVR-VESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI  356 (579)
Q Consensus       297 ~v~~~~~~-------------------~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~  356 (579)
                      .|...+..                   +...... ...............+.|.+.|.|.+.+.|++++..+........
T Consensus        93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~  172 (334)
T 1ry7_B           93 RVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG  172 (334)
T ss_dssp             --------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC
T ss_pred             EEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc
Confidence            55432210                   0000000 000000001122234468888999999999999998876543211


Q ss_pred             EECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEeeC
Q psy16852        357 YQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGRP  435 (579)
Q Consensus       357 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p  435 (579)
                      .........|.|.++..+|+|.|+|.|.|..|.....+.|.|...+.  .+|.+.. .+....+..|+.++|.|.+.|.|
T Consensus       173 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~--~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p  250 (334)
T 1ry7_B          173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHCKVYSDA  250 (334)
T ss_dssp             CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC--SSCBCCTTCSCCEEEESSCCEEECCCCBCSS
T ss_pred             eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC--CCCceEecCCCceEEeCCCCEEEEEEEecCC
Confidence            11122334899999999999999999999999988888888876431  2344443 34567789999999999999999


Q ss_pred             CCeEEEee----CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccce
Q psy16852        436 TPSICWYR----GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG  511 (579)
Q Consensus       436 ~~~v~W~~----~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  511 (579)
                      .|.+.|++    +|..+..+.+.........+                          ....++..+.|.|.+++.+|+|
T Consensus       251 ~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~L~i~~v~~~d~G  304 (334)
T 1ry7_B          251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG--------------------------ANTTDKELEVLSLHNVTFEDAG  304 (334)
T ss_dssp             CEEEEEEECCCGGGCSBCTTSSBCCCCCCCSS--------------------------CSCSCTTCCCEEECSCCTTSCS
T ss_pred             CCeEEEEECCcCCCccccCCCCeeEEEeecCc--------------------------cccccccccEEEEccCCHHHCE
Confidence            99999999    66666544321110000000                          0001223456999999999999


Q ss_pred             eEEEEEEeCCeeEEEEEEEEEe
Q psy16852        512 DVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       512 ~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .|+|.|.|..|....++.|.|.
T Consensus       305 ~Y~C~a~N~~G~~~~~~~l~V~  326 (334)
T 1ry7_B          305 EYTCLAGNSIGFSHHSAWLVVL  326 (334)
T ss_dssp             EEEEEEEESSCCEEEEEEEEEE
T ss_pred             EEEEEEeCCCCeEEEEEEEEEE
Confidence            9999999999999999999987

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=4.1e-30  Score=242.26  Aligned_cols=267  Identities=19%  Similarity=0.228  Sum_probs=191.0

Q ss_pred             eeeCCCCeEEEEEEEE-ccCCCeEEEEECCEEeccCc---eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852        221 LLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV  296 (579)
Q Consensus       221 ~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~  296 (579)
                      ..+.+|+.+.|.|... +.|.+.+.|++++..+....   .........|.|.+++.+|+|.|+|.|.|..|... +..+
T Consensus        11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l   89 (312)
T 2y23_A           11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLI   89 (312)
T ss_dssp             EEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEE
T ss_pred             EEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEE
Confidence            4578899999998875 47888999999999987554   23344568999999999999999999999887543 4443


Q ss_pred             EEEecc----------ceeeeeee--eeeccccCceeeeecCeeEEEe-eeCCCeEEEEECCEEccCCCeEEEEEC-CCC
Q psy16852        297 TITVAE----------AETVMMDV--RVESHPTASFQWFIHSEPVVVT-GKPTPLVTWSHDGTPMKEGKEVTIYQD-TDG  362 (579)
Q Consensus       297 ~v~~~~----------~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~  362 (579)
                      .|....          .+.+.+..  .....     ......+.|.+. +.|.+.+.|++++..+....++.+..+ ..+
T Consensus        90 ~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~-----~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~  164 (312)
T 2y23_A           90 DEEELKRLLALSHEHKFPTVPVKSELAVEIL-----EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG  164 (312)
T ss_dssp             CHHHHHHHHHHHHHHHSCBCCEEEEEEEEEC-----SSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTT
T ss_pred             EEeeeeeeecccccCCCCccccccCCceEEe-----eCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCC
Confidence            332100          12111111  11111     111223458888 889999999999999988776665543 356


Q ss_pred             eEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecc---------------cCCCCCeeecCCCceeeecCCCeEE
Q psy16852        363 LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKE---------------ESGEAPKFTKPLKPVIAEAQSPATL  427 (579)
Q Consensus       363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~---------------~~~~~p~~~~~~~~~~~~~g~~~~l  427 (579)
                      ...|.|.++..+|+|.|+|.|.+..+.......  +....               ....+|.+..+.. ..+.+|+.++|
T Consensus       165 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~v~~G~~~~l  241 (312)
T 2y23_A          165 IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVV--LVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNVLL  241 (312)
T ss_dssp             EEEEEESCCCGGGCEEEEEEEESSSCEEEEEEE--ECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE-EEEETTTEEEE
T ss_pred             EEEEEEccCCcccCEeEEEEEEeCCceEEEEEE--EcchhhhhhcccccccccchhhccCCceeecce-EEEeCCCEEEE
Confidence            678999999999999999999876554443333  21000               0012455554333 67889999999


Q ss_pred             EEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecc
Q psy16852        428 KATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT  506 (579)
Q Consensus       428 ~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~  506 (579)
                      .|.+.|.|.| .+.|++++..+..+.++.+.                                     +..+.|.|.+++
T Consensus       242 ~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~-------------------------------------~~~~~L~I~~v~  284 (312)
T 2y23_A          242 KCKVANIKKETHIVWYKDEREISVDEKHDFK-------------------------------------DGICTLLITEFS  284 (312)
T ss_dssp             EEEEESCCSSCEEEEEETTEEEEEECCC-----------------------------------------CEEEEEECSCS
T ss_pred             EEEEcCCCCCCEEEEeeCCEECCCCCcEEEE-------------------------------------CCEEEEEECcCC
Confidence            9999999998 99999999988654443321                                     123569999999


Q ss_pred             cccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        507 RDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       507 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .+|+|.|+|.|.|..|....++.|.|+
T Consensus       285 ~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          285 KKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             GGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             HHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            999999999999999999999998763

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=3.6e-31  Score=253.54  Aligned_cols=274  Identities=18%  Similarity=0.203  Sum_probs=169.5

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCC-----------CeeEEEECCEE------ec-CCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPL-----------PTMTWQKDGTE------LH-ATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~-----------~~v~W~~~g~~------~~-~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      .+.++.+.+|+++.|.|.+.+.|.           +.+.|||++..      +. .....++....  ..|.|.+++.+|
T Consensus        13 ~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~D   90 (349)
T 4dep_C           13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK--DVLWFRPTLLND   90 (349)
T ss_dssp             CCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEET--TEEEESSCCGGG
T ss_pred             eeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecC--CEEEEccCChhh
Confidence            467789999999999999987553           89999998842      21 01112222222  479999999999


Q ss_pred             CEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-----EeecCCeEEEEECCEEccC
Q psy16852         74 IGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-----TGRPTPSICWYRGKEEILP  148 (579)
Q Consensus        74 ~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~i~W~~~~~~~~~  148 (579)
                      +|.|+|.|.|..+.....+.+.|..++..  .+.....+....+.+|+.+.|.|.+     .+.|.+.+.|++++..+..
T Consensus        91 ~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~  168 (349)
T 4dep_C           91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSC--FNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN  168 (349)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECCCTT--SCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCS
T ss_pred             CEEEEEEEecCCceEEEEEEEEEecCCcc--cCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCC
Confidence            99999999999888888888888764321  1111122345578899999999974     6678899999999998854


Q ss_pred             CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC-cee---EEEEEEEEeeccccCCCCccCCCeEeccCCce--e
Q psy16852        149 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF-GRA---ECRANLVLRKATTIDKPRVLEAPTIVRPLQAL--L  222 (579)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~---~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~--~  222 (579)
                      ..  .+....    ..|.|.+++.+|+|.|+|.+.|.. |..   .....+.+....     ....+|.+..+....  .
T Consensus       169 ~~--~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~-----~~~~~p~i~~~~~~~~~~  237 (349)
T 4dep_C          169 FN--NVIPEG----MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSP-----KNAVPPVIHSPNDHVVYE  237 (349)
T ss_dssp             CS--SEEEET----TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCG-----GGCCSCEEC---------
T ss_pred             cc--ceeecC----CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccC-----CCCCCCeEecCCCceeEE
Confidence            32  222221    469999999999999999999976 433   233333333111     011155555554332  6


Q ss_pred             eCCCCeEEEEEEEE----ccCCCeEEEEECCEEeccCc--eEE-----------eCCeEEEEEcccCCCCC-eEEEEEEE
Q psy16852        223 VPKDSTVTLEAEYT----GTPTPEVKWFKNGKEIVSKD--IET-----------KDNVTKLVIKQTTKKTT-GKYEIRVV  284 (579)
Q Consensus       223 ~~~g~~~~l~C~~~----~~p~~~v~W~~~~~~i~~~~--~~~-----------~~~~~~l~i~~~~~~d~-G~y~C~a~  284 (579)
                      +.+|+.+.|.|.+.    +.|.+.+.|+++|..+....  ...           ......|.|.++..+|+ |.|+|.|.
T Consensus       238 v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~  317 (349)
T 4dep_C          238 KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR  317 (349)
T ss_dssp             -------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEE
T ss_pred             EecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEE
Confidence            78899999999998    56888999999998876511  100           11234599999999999 99999999


Q ss_pred             cCCeeeEEEEEEEEEe
Q psy16852        285 NEAGEARTSGSVTITV  300 (579)
Q Consensus       285 n~~g~~~~~~~~~v~~  300 (579)
                      |..|.....+.|.|..
T Consensus       318 N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          318 SAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             CSSCEEEEECC-----
T ss_pred             cCCCcEEEEEEEeeec
Confidence            9999988887777643

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.97  E-value=2.3e-31  Score=250.11  Aligned_cols=271  Identities=17%  Similarity=0.211  Sum_probs=191.2

Q ss_pred             CceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEe---------------cCC--CCEEEEE-eCCEEEEEEcCCCCCCC
Q psy16852         14 QPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTEL---------------HAT--EHYLITT-VESVSTLEIINPTKEDI   74 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~---------------~~~--~~~~~~~-~~~~~~L~i~~~~~~d~   74 (579)
                      ..+.+.+|++++|.|.+.+. +.+.++|+|++...               ...  .+..... .....+|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            46789999999999998654 34579999964321               111  1111110 12346799999999999


Q ss_pred             EEEEEEEEcC-CeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCc
Q psy16852         75 GVYTCKATNI-GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGH  152 (579)
Q Consensus        75 G~Y~C~~~~~-~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~  152 (579)
                      |.|+|.|.+. .|.......+.+...+    .+.....+.......|+.+.|.|.+ .+.|.+.|.|++++..+..... 
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~-  161 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEP----TVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT-  161 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCC----EEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE-
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeecc----ccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc-
Confidence            9999999875 4666667777776542    1122333444556678999999986 6789999999999876643211 


Q ss_pred             eEEEcCC--CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEecc-CCceeeCCCCeE
Q psy16852        153 TMEFNPT--TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP-LQALLVPKDSTV  229 (579)
Q Consensus       153 ~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~-~~~~~~~~g~~~  229 (579)
                        .....  .....|.|..+..+|+|.|+|.|.|..+....+..+.+.         +..+|.+... .....+..|+.+
T Consensus       162 --~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~---------V~~~P~~~~~~~~~~~~~~g~~v  230 (308)
T 4fom_A          162 --SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILD---------IQYAPEVSVTGYDGNWFVGRKGV  230 (308)
T ss_dssp             --ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC---------CCEEEEECCBCCCSCEETTCCSC
T ss_pred             --eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEE---------EecCCeeEEcccceeeeeccccE
Confidence              00000  112479999999999999999999987766555555443         2234444333 334457788999


Q ss_pred             EEEEEEEccCCC-eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEecc
Q psy16852        230 TLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE  302 (579)
Q Consensus       230 ~l~C~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~  302 (579)
                      +|.|.+.|.|.+ .+.|++++..+....  .......|.|.+++.+|+|.|+|.|.|..|....++.|.|...+
T Consensus       231 ~l~C~~~g~P~p~~v~W~k~~~~~~~~~--~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P  302 (308)
T 4fom_A          231 NLKCNADANPPPFKSVWSRLDGQWPDGL--LASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP  302 (308)
T ss_dssp             EEECCEEEESCEEEEECCBSSSCCCSSC--BCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred             EEEEEEecCCCCcEEEEEECCeECCCcE--EEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence            999999999988 799999998776543  22344567789999999999999999999998877777765443

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=2.2e-30  Score=241.14  Aligned_cols=268  Identities=17%  Similarity=0.154  Sum_probs=189.8

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      .+|.+...+....+.+|+.+.|.|.+.+    .+.|++++..+.   .. ...+..|.|.+++.+|+|.|+|.|.|  |.
T Consensus        11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~---~~-~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~   80 (290)
T 2o26_X           11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE---MV-ENKKNEWIQEKAEATRTGTYTCSNSN--GL   80 (290)
T ss_dssp             -CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC---EE-EECSSEEEETTCCGGGCEEEEEEESS--SC
T ss_pred             CCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee---ee-cCCCceEEEeccCHHhCeEEEEEeeC--Cc
Confidence            5677777777788999999999999876    899999987661   11 12227899999999999999999998  43


Q ss_pred             eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC-CeEEE-EECCEEccCCCeEEEEECCCCeEEEE
Q psy16852        290 ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT-PLVTW-SHDGTPMKEGKEVTIYQDTDGLCKLA  367 (579)
Q Consensus       290 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~i~W-~~~~~~~~~~~~~~~~~~~~~~~~l~  367 (579)
                       ..++.+.|...+... ...-..     .........+.|.+.+ |. +.+.| .++|..+..+.++.....  +  .|.
T Consensus        81 -~~~~~l~V~~~~~~~-~~~~~~-----~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~--~--~L~  148 (290)
T 2o26_X           81 -TSSIYVFVRDPAKLF-LVGLPL-----FGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPK--A--GIT  148 (290)
T ss_dssp             -EEEEEEEEECSSCCB-CCCCCE-----EEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETT--T--EEE
T ss_pred             -cEEEEEEEeCCCccc-ccccce-----EEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCC--C--CEE
Confidence             455555555322211 100000     0011122334577775 77 89999 578888876655443322  2  799


Q ss_pred             EcccCCCCCE-EEEEEEEcCceeEEE-EEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCe-EEEeeC
Q psy16852        368 ISEVFPENAG-LYSCTAVNPVGEAVA-AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRG  444 (579)
Q Consensus       368 i~~~~~~d~G-~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~  444 (579)
                      |.++..+|+| .|+|.|.|..+.... .+.|.|...  ...+|.+...+....+.+|+.++|.|.+.|.|.|. +.|+++
T Consensus       149 i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~--~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~  226 (290)
T 2o26_X          149 IKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREA--IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKM  226 (290)
T ss_dssp             EESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECC--CCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEE
T ss_pred             EecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeC--CCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecC
Confidence            9999999999 999999998665433 467777631  22478887777777899999999999999999996 999999


Q ss_pred             CEEc----CCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        445 KEEI----LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       445 ~~~l----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      +..+    .......+..                    .            ......+.|.|.+++.+|+|.|+|.|.|.
T Consensus       227 ~~~~~~~~~~~~~~~~~~--------------------~------------~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~  274 (290)
T 2o26_X          227 NPQPQHIAQVKHNSWHRG--------------------D------------FNYERQETLTISSARVDDSGVFMCYANNT  274 (290)
T ss_dssp             SSSEEECCCEECCEEEEE--------------------T------------TEEEEEEEEEESSCCSSSCEEEEEEEECS
T ss_pred             CCCCccceeecccccccC--------------------c------------eeeEEEEEEEEcCCCcccCeEEEEEEeCC
Confidence            8763    2111111100                    0            01123457999999999999999999999


Q ss_pred             CeeEEEEEEEEEe
Q psy16852        521 AGSVTCTATLSLL  533 (579)
Q Consensus       521 ~g~~~~~~~l~v~  533 (579)
                      .|....++.|.|.
T Consensus       275 ~g~~~~~~~l~V~  287 (290)
T 2o26_X          275 FGSANVTTTLKVV  287 (290)
T ss_dssp             SCEEEEEEEECC-
T ss_pred             CCcEEEEEEEEEE
Confidence            9999998888875

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.97  E-value=7.4e-31  Score=244.82  Aligned_cols=269  Identities=16%  Similarity=0.210  Sum_probs=196.4

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      .||.|...+.++.+.+|++++|.|.+.+    .+.|++++..     ............|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   73 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGD   73 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSS----CCCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCC----ceEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEEccC
Confidence            5899999999999999999999999976    3999976542     223333445689999999999999999999998


Q ss_pred             CeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC--CeEEEEECCE-EccCCCCceEEEcCCCC
Q psy16852         85 GGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKE-EILPDNGHTMEFNPTTG  161 (579)
Q Consensus        85 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~-~~~~~~~~~~~~~~~~~  161 (579)
                      .+.....+.|.|...+     ..+...+....+.+|+.+.|.|.+.+ |.  +.+.|++++. .+.....  ......  
T Consensus        74 ~~~~~~~~~l~V~~~~-----~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~--~~~~~~--  143 (292)
T 4dkd_C           74 PLGGSAAIHLYVKDPA-----RPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTN--YSFSPW--  143 (292)
T ss_dssp             ---CCEEECCEECCSS-----CCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCC--EECCSS--
T ss_pred             CCCcceEEEEEEcCcc-----ccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCc--ccccCC--
Confidence            7777777788886532     22344556778899999999999987 54  7899999844 3333222  222222  


Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT  240 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  240 (579)
                       ..|.|.++..+|+|.|+|.+.+..+.... ...+.+...       ...+|.+...+....+.+|+.+.|.|.+.+.|.
T Consensus       144 -~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~-------~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~  215 (292)
T 4dkd_C          144 -HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKV-------IPGPPALTLVPAELVRIRGEAAQIVCSASSVDV  215 (292)
T ss_dssp             -SCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECC-------CCSSCEEEEESSCBCCCSSSCEEEEEEEEESSS
T ss_pred             -ceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCC-------CCCCCeEEccCCceeEecCCCEEEEEEecCCCC
Confidence             23999999999999999999988665433 445555421       113677777777667789999999999998665


Q ss_pred             -CeEEEEECCEEeccCce-EE----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852        241 -PEVKWFKNGKEIVSKDI-ET----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV  300 (579)
Q Consensus       241 -~~v~W~~~~~~i~~~~~-~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~  300 (579)
                       ..+.|++++..+..... ..    ......|.|.++..+|+|.|+|.|.|..|....+..|.|..
T Consensus       216 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          216 NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             CCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             ceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence             47889998876654331 11    12335899999999999999999999999988777776653

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=1.8e-30  Score=248.75  Aligned_cols=283  Identities=15%  Similarity=0.178  Sum_probs=163.6

Q ss_pred             CCceeeCCCCeEEEEEEEEccCC-----------CeEEEEECCE------Eec--cCceEEeCCeEEEEEcccCCCCCeE
Q psy16852        218 LQALLVPKDSTVTLEAEYTGTPT-----------PEVKWFKNGK------EIV--SKDIETKDNVTKLVIKQTTKKTTGK  278 (579)
Q Consensus       218 ~~~~~~~~g~~~~l~C~~~~~p~-----------~~v~W~~~~~------~i~--~~~~~~~~~~~~l~i~~~~~~d~G~  278 (579)
                      ...+.+.+|+.+.|.|.+.+.|.           +.+.|++++.      .+.  ............|.|.+++.+|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            34566889999999999887554           8999999883      221  0111111223479999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEE-----eeeCCCeEEEEECCEEccCCCe
Q psy16852        279 YEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV-----TGKPTPLVTWSHDGTPMKEGKE  353 (579)
Q Consensus       279 y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~g~p~~~i~W~~~~~~~~~~~~  353 (579)
                      |+|.|.|..+....+..+.|...+.......  ...............+.|.+     .|.|.+.+.|++++.++.....
T Consensus        94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~--~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~  171 (349)
T 4dep_C           94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPM--KLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNN  171 (349)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTSCCSC--CCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSS
T ss_pred             EEEEEecCCceEEEEEEEEEecCCcccCccc--ccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccc
Confidence            9999999988877777777764321100000  00000000011112234543     6789999999999999876544


Q ss_pred             EEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCc-eeE---EEEEEEEEEecccCCCCCeeecCCCce--eeecCCCeEE
Q psy16852        354 VTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV-GEA---VAAATLAVEEKEESGEAPKFTKPLKPV--IAEAQSPATL  427 (579)
Q Consensus       354 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~l~v~~~~~~~~~p~~~~~~~~~--~~~~g~~~~l  427 (579)
                      +..  .+   ..|.|.++..+|+|.|+|.|.|.. |..   ...+.|.|...+....+|.+..+....  .+..|+.++|
T Consensus       172 ~~~--~~---~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l  246 (349)
T 4dep_C          172 VIP--EG---MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI  246 (349)
T ss_dssp             EEE--ET---TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CC
T ss_pred             eee--cC---CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEE
Confidence            332  22   279999999999999999999986 543   566777777654444467777665443  7889999999


Q ss_pred             EEEEE----eeCCCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEE
Q psy16852        428 KATVT----GRPTPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLI  502 (579)
Q Consensus       428 ~C~~~----g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i  502 (579)
                      .|.+.    |.|.|.+.|+++|..+.. ..++.+..        ..   ......+               ....++|+|
T Consensus       247 ~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~--------~~---~~~~~~~---------------~~~~~~L~i  300 (349)
T 4dep_C          247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE--------SI---SHSRTED---------------ETRTQILSI  300 (349)
T ss_dssp             CEEEEECCCTTCCCEEEEESSCC--------CCCCE--------EE---ECCTTCC---------------EEEEECC--
T ss_pred             EEEEEEccCCCCCCEEEEEECCEEccccCCcccccc--------ce---eeecCCC---------------cEEEEEEEE
Confidence            99999    568899999999988755 22221100        00   0000000               112455999


Q ss_pred             eecccccc-eeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        503 SKITRDQI-GDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       503 ~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .++..+|+ |.|+|.|.|..|....++.|.|.
T Consensus       301 ~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  332 (349)
T 4dep_C          301 KKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK  332 (349)
T ss_dssp             -----------CEEEEECSSCEEEEECC----
T ss_pred             eeccHHHcCCcEEEEEEcCCCcEEEEEEEeee
Confidence            99999999 99999999999999999999874

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.97  E-value=5.4e-28  Score=235.32  Aligned_cols=274  Identities=16%  Similarity=0.213  Sum_probs=197.6

Q ss_pred             ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEEC--CEEccCCC---CceEEEcCCCCeEEEEECcCCCCCCeEEEEE
Q psy16852        107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG--KEEILPDN---GHTMEFNPTTGECVLSISEATPQDEAVYSVK  181 (579)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  181 (579)
                      .+.. +.+..+.+|+.+.|.|.+.|.|.+.|.|+++  +..+....   ..++......+.+.|.|.+++.+|+|.|+|.
T Consensus         3 ~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   81 (389)
T 2jll_A            3 HIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE   81 (389)
T ss_dssp             EEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEE
Confidence            4443 4556777899999999999999999999999  87775421   2223333335678999999999999999999


Q ss_pred             EEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc-----
Q psy16852        182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----  256 (579)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~-----  256 (579)
                      |.|..|.......+.|.           .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....     
T Consensus        82 a~n~~g~~~~~~~l~V~-----------~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~  150 (389)
T 2jll_A           82 AASRIGGHQKSMYLDIE-----------YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLK  150 (389)
T ss_dssp             EECSSCEEEEEEEEEEE-----------EEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEE
T ss_pred             EEeCCCCcceEEEEEEE-----------eCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEE
Confidence            99999988777777765           45555555555568899999999999999999999999999987643     


Q ss_pred             eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC
Q psy16852        257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT  336 (579)
Q Consensus       257 ~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~  336 (579)
                      .........|.|.++...|+|.|+|.|.|..|.......+.+...+..+..+...........+.|....   ...|.|.
T Consensus       151 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~---~~~g~pi  227 (389)
T 2jll_A          151 TYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPD---SHGGVPI  227 (389)
T ss_dssp             EEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCS---CCTTSCE
T ss_pred             EeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCC---CCCCcce
Confidence            2223456789999999999999999999999998777766665444444344444444455566665321   1123332


Q ss_pred             C--eEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEe
Q psy16852        337 P--LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE  400 (579)
Q Consensus       337 ~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  400 (579)
                      .  .+.|.+++...    .. ..........+.|.++...+.|.|+|.|.|..|....+..+.+..
T Consensus       228 ~~y~v~~~~~~~~~----~~-~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t  288 (389)
T 2jll_A          228 HHYQVDVKEVASEI----WK-IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT  288 (389)
T ss_dssp             EEEEEEEEETTCSC----CE-EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred             EEEEEEEEECCCcc----cE-EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEe
Confidence            2  57788776421    11 122222334799999999999999999999999766555554443

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.97  E-value=1e-28  Score=231.82  Aligned_cols=264  Identities=25%  Similarity=0.377  Sum_probs=199.5

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITT-VESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+... .++.... .++...|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            5899999999999999999999999999999999999999998754 3455443 3456799999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852         83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE  162 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  162 (579)
                      |..|.....+.|.|...+... .+.....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+...  ...
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~-~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--~~~  159 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVPAKIH-LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT--RSF  159 (305)
T ss_dssp             ETTEEEEEEEEEEECEEEEEC-CCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEEC--SSE
T ss_pred             cCCCCccceEEEEEecCCccC-CCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEc--CCc
Confidence            999988888888887654322 22223334567788999999999999999999999999988876655554432  345


Q ss_pred             EEEEECc-CCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeE------------
Q psy16852        163 CVLSISE-ATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTV------------  229 (579)
Q Consensus       163 ~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~------------  229 (579)
                      ..|.|.+ +..+|+|.|+|.|.|..|.......+.+....        .+|....    .....+..+            
T Consensus       160 ~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P--------~~p~~~~----~~~~~~~~v~l~w~~p~~~g~  227 (305)
T 2nzi_A          160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP--------DPPRGVK----VSDVSRDSVNLTWTEPASDGG  227 (305)
T ss_dssp             EEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC--------CCCEEEE----EESCCSSCEEEEEECCSCCSB
T ss_pred             eEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC--------CCCCCce----eeeccCCEEEEEEcCCccCCC
Confidence            7899999 99999999999999999988877777765211        2222110    011123334            


Q ss_pred             --EEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852        230 --TLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS  293 (579)
Q Consensus       230 --~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~  293 (579)
                        .+.|.+...+.+...|.+.+...          ...+.|.++...+.|.|+|.|.|..|....+
T Consensus       228 ~~i~~y~v~~~~~~~~~w~~~~~~~----------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          228 SKITNYIVEKCATTAERWLRVGQAR----------ETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             SCEEEEEEEEEETTSCCEEEEEEES----------SSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             CceeEEEEEEecCCCCccEECcccc----------CceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence              44555554444455565543321          3469999999999999999999999976544

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.97  E-value=4.1e-30  Score=242.02  Aligned_cols=262  Identities=16%  Similarity=0.175  Sum_probs=177.4

Q ss_pred             cCCceeeCCCCeEEEEEEEEccCCC-----eEEEEECCEEec-------------cCc-eEE-------eCCeEEEEEcc
Q psy16852        217 PLQALLVPKDSTVTLEAEYTGTPTP-----EVKWFKNGKEIV-------------SKD-IET-------KDNVTKLVIKQ  270 (579)
Q Consensus       217 ~~~~~~~~~g~~~~l~C~~~~~p~~-----~v~W~~~~~~i~-------------~~~-~~~-------~~~~~~l~i~~  270 (579)
                      .+..+.+..|++++|.|.+.+.+.+     .+.|+|++....             ... ...       .....+|.|.+
T Consensus         6 ~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (313)
T 4fqp_A            6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (313)
T ss_dssp             CCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred             CCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence            3445567889999999999886655     489999875321             110 111       11235699999


Q ss_pred             cCCCCCeEEEEEEEc-CCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECCEEc
Q psy16852        271 TTKKTTGKYEIRVVN-EAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDGTPM  348 (579)
Q Consensus       271 ~~~~d~G~y~C~a~n-~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~~~~  348 (579)
                      ++.+|+|.|+|.+.+ ..+.....+  .|.+...+...........    .......+.|.+ .|.|.+.+.|++++..+
T Consensus        86 v~~~D~G~Y~C~v~~~~~~~~~~~~--~l~v~~~P~~~~~~~~~~~----~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~  159 (313)
T 4fqp_A           86 LRVEDEGNYTCLFVTFPQGSRSVDI--WLRVLAKPQNTAEVQKVQL----TGEPVPMARCVSTGGRPPAQITWHSDLGGM  159 (313)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEEE--EECCBBCCEEEEEECCBCC----CSSCEEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred             CChhhCEEEEEEEeeccCcceeeee--eeeeccCCcceecccceEe----ecCceEEEEEEccCccCCcEEEeecCCccc
Confidence            999999999999864 344444443  4443333333222211110    111112234654 57899999999998876


Q ss_pred             cCCCeEEEEECCCC----eEEEEEcccCCCCCEEEEEEEEcCceeE--EEEEEEEEEecccCCCCCeee-cCCCceeeec
Q psy16852        349 KEGKEVTIYQDTDG----LCKLAISEVFPENAGLYSCTAVNPVGEA--VAAATLAVEEKEESGEAPKFT-KPLKPVIAEA  421 (579)
Q Consensus       349 ~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~~~~~~p~~~-~~~~~~~~~~  421 (579)
                      .......  ...++    .+.|.|.....+|+|.|+|.|.|..+..  ..++.|.|..      +|.+. .+.....+..
T Consensus       160 ~~~~~~~--~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~------~P~v~~~~~~~~~~~~  231 (313)
T 4fqp_A          160 PNTSQVP--GFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY------PPEVSISGYDNNWYLG  231 (313)
T ss_dssp             EEEEEEE--CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE------EEEEEEECCCSCEETT
T ss_pred             cccceee--eecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc------CCccccccccceeecC
Confidence            5433222  11222    2468999999999999999999987644  3444555554      56654 3444456778


Q ss_pred             CCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852        422 QSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL  500 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l  500 (579)
                      |+.++|.|.+.|+|.| .|.|+++|..+....  .                                       ...+.|
T Consensus       232 g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~--~---------------------------------------~~~~~L  270 (313)
T 4fqp_A          232 QNEATLTCDARSNPEPTGYNWSTTMGPLPPFA--V---------------------------------------AQGAQL  270 (313)
T ss_dssp             CCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--E---------------------------------------EETTEE
T ss_pred             CCeEEEEEEecCCCCCcEEEEEECCEECCCce--E---------------------------------------EeCCEE
Confidence            8999999999999999 799999998774321  0                                       012349


Q ss_pred             EEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       271 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          271 LIRPVDKPINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             EECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            999999999999999999999999999999986

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=1.6e-29  Score=235.31  Aligned_cols=274  Identities=16%  Similarity=0.164  Sum_probs=192.7

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      .+|.+...+....+.+|+.+.|.|.+.+    .+.|++++....  ..........|.|.+++.+|+|.|+|.+.|..+.
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   76 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW--TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMA   76 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS--EECCCSSCCEEEESSCCGGGCEEEEEECCC----
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE--EEeccCCccEEEEeeeccccCEEEEEEEeccCCc
Confidence            3566666667778999999999999876    599998764321  1122345578999999999999999999988877


Q ss_pred             eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCe-EEEEE-CCEEccCCCeEEEEECCCCeEEEE
Q psy16852        290 ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPL-VTWSH-DGTPMKEGKEVTIYQDTDGLCKLA  367 (579)
Q Consensus       290 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~-i~W~~-~~~~~~~~~~~~~~~~~~~~~~l~  367 (579)
                      ......+.|...+.......-...     ........+.|.+.+.+.+. +.|++ ++..+....++.....  +  .|.
T Consensus        77 ~~~~~~l~V~~~~~~~~~~~~~~~-----v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~--~L~  147 (289)
T 3ejj_X           77 GSTTIHLYVKDPAHSWNLLAQEVT-----VVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPW--R--GFI  147 (289)
T ss_dssp             -CEEEEEEECCSSCSEEESCSEEE-----EETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETT--T--EEE
T ss_pred             ceeEEEEEEeCCCcceecccceEE-----EecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCC--C--CEE
Confidence            666666665543322111110011     11112233468888877765 99986 6777766655554322  2  699


Q ss_pred             EcccCCCCCEEEEEEEE-cCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEe-eCCCeEEEeeCC
Q psy16852        368 ISEVFPENAGLYSCTAV-NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGK  445 (579)
Q Consensus       368 i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~  445 (579)
                      |.++..+|+|.|+|.|. +..+.....+.|.|...  ...+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|++++
T Consensus       148 i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~--~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~  225 (289)
T 3ejj_X          148 IRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV--HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGD  225 (289)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESS--CCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETT
T ss_pred             EeecccccCEEEEEEEEeCCCccccccEEEEEEEC--CCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECC
Confidence            99999999999999999 65666667778888742  224788887777777889999999999998 789999999999


Q ss_pred             EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE
Q psy16852        446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT  525 (579)
Q Consensus       446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  525 (579)
                      ..+.........    .                             ......+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus       226 ~~~~~~~~~~~~----~-----------------------------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  272 (289)
T 3ejj_X          226 TKLEIPLNSDFQ----D-----------------------------NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT  272 (289)
T ss_dssp             EECCCCEEEEEC----S-----------------------------SSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEE
T ss_pred             EEeeccCCcccc----c-----------------------------ceEEeeEEEEEEeecccCCEEEEEEEEcCCCCcc
Confidence            888543221110    0                             0011245699999999999999999999999999


Q ss_pred             EEEEEEEe
Q psy16852        526 CTATLSLL  533 (579)
Q Consensus       526 ~~~~l~v~  533 (579)
                      .++.|.+.
T Consensus       273 ~s~~L~~~  280 (289)
T 3ejj_X          273 ATMNFQVV  280 (289)
T ss_dssp             EEEEEECC
T ss_pred             ccEEEEEE
Confidence            99999975

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=1.5e-30  Score=245.53  Aligned_cols=279  Identities=17%  Similarity=0.186  Sum_probs=190.3

Q ss_pred             ceeeCCCCeEEEEEEEEccC-CCeEEEEECCEEeccC---ceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEE
Q psy16852        220 ALLVPKDSTVTLEAEYTGTP-TPEVKWFKNGKEIVSK---DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS  295 (579)
Q Consensus       220 ~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~i~~~---~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~  295 (579)
                      .+.+.+|+.+.|.|.+.+.| .+.+.|++++..+...   ..........|.|.+++.+|+|.|+|.|.|..|.......
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS   93 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEECC
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEEE
Confidence            45688999999999998877 6799999998643211   1111112237999999999999999999998877665554


Q ss_pred             EEEEecccee-----eeeeeeeeccccCceeeeecCeeEEE------eeeCCCeEEEEECCEEccCCCeEEEEECCCCeE
Q psy16852        296 VTITVAEAET-----VMMDVRVESHPTASFQWFIHSEPVVV------TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC  364 (579)
Q Consensus       296 ~~v~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~------~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  364 (579)
                      +.+...+...     ....-.+..+.       ...+.|.+      .|.|.+.+.|++++.++...........  +  
T Consensus        94 v~v~~~~p~~~~~~~~~~~~~~~~g~-------~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~--~--  162 (315)
T 1itb_B           94 AKFVENEPNLCYNAQAIFKQKLPVAG-------DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK--D--  162 (315)
T ss_dssp             CEEECCCTTSSSCGGGEEEEEEETTS-------CEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEET--T--
T ss_pred             EEEeCCCCCcccccccccceEEecCC-------CeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecC--c--
Confidence            4433221110     00001111111       12234655      7889999999999999865432222222  2  


Q ss_pred             EEEEcccCCCCCEEEEEEEE-cCceeE---EEEEEEEEEecccCCCCCeeecCCCc-eeeecCCCeEEEEEEEeeCCCeE
Q psy16852        365 KLAISEVFPENAGLYSCTAV-NPVGEA---VAAATLAVEEKEESGEAPKFTKPLKP-VIAEAQSPATLKATVTGRPTPSI  439 (579)
Q Consensus       365 ~l~i~~~~~~d~G~Y~C~a~-n~~g~~---~~~~~l~v~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~v  439 (579)
                      .|.|.++..+|+|.|+|.|. |..|..   ...+.+.+.. +....+|.+..++.. ..+.+|+.++|.|.+.|.|.|.+
T Consensus       163 ~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~-~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i  241 (315)
T 1itb_B          163 RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLE-ENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA  241 (315)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC-CCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred             eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEec-CCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence            89999999999999999999 777766   3333443332 122357778766554 57899999999999999999999


Q ss_pred             EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEE
Q psy16852        440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAE  518 (579)
Q Consensus       440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~  518 (579)
                      .|+++|..+..........       ...+....  +.+              .....+.|.|.+++.+| +|.|+|.|.
T Consensus       242 ~W~~~g~~i~~~~~~~~~~-------~~~~~~~~--~~~--------------~~~~~~~L~i~~v~~~d~~G~Y~C~a~  298 (315)
T 1itb_B          242 YWKWNGSVIDEDDPVLGED-------YYSVENPA--NKR--------------RSTLITVLNISEIESRFYKHPFTCFAK  298 (315)
T ss_dssp             EEEETTEECCTTCSSEEEE-------EEEECCSS--CGG--------------GEEEEEEEEESSCCGGGGTSCEEEEEE
T ss_pred             EEEECCEECCccccccccc-------ceeeeccC--CCc--------------eeEEEEEEEEeecCHHHcCCceEEEEe
Confidence            9999999987665432210       01111000  000              01134579999999999 999999999


Q ss_pred             eCCeeEEEEEEEEEe
Q psy16852        519 NVAGSVTCTATLSLL  533 (579)
Q Consensus       519 n~~g~~~~~~~l~v~  533 (579)
                      |..|....++.|.|.
T Consensus       299 N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          299 NTHGIDAAYIQLIYP  313 (315)
T ss_dssp             CTTCCEEEEEEEECC
T ss_pred             cCCCceeEEEEEEec
Confidence            999999999999874

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=3.7e-31  Score=252.41  Aligned_cols=289  Identities=16%  Similarity=0.194  Sum_probs=203.9

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEE-------ccCCCeEEEEECCEEe--ccC-ceEEeCCeEEEEEcccCCCCCeEE
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYT-------GTPTPEVKWFKNGKEI--VSK-DIETKDNVTKLVIKQTTKKTTGKY  279 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~-------~~p~~~v~W~~~~~~i--~~~-~~~~~~~~~~l~i~~~~~~d~G~y  279 (579)
                      ..|.+...+....+.+|+.+.|.|.+.       +.|.+.+.|++++..+  ... ..........|.|.+++.+|+|.|
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   96 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTY   96 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEE
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEE
Confidence            456666777788899999999999997       8888899999999873  332 111112234799999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEEEecccee---eeeeeeeeccccCceeeeecCeeEE-----EeeeCCCeEEEEECCEEccCC
Q psy16852        280 EIRVVNEAGEARTSGSVTITVAEAET---VMMDVRVESHPTASFQWFIHSEPVV-----VTGKPTPLVTWSHDGTPMKEG  351 (579)
Q Consensus       280 ~C~a~n~~g~~~~~~~~~v~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~p~~~i~W~~~~~~~~~~  351 (579)
                      +|.+.|..|....+..+.|...+...   ....-.+..+..       ..+.|.     +.|.|.+.+.|++++..+...
T Consensus        97 ~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~-------v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~  169 (339)
T 3o4o_C           97 VCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTS-------GVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKD  169 (339)
T ss_dssp             ECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSC-------EEEECCSCTTTCCSSSCCCBCCEESSCBCCTT
T ss_pred             EEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCC-------EEEEecCCcccccCCCCceEEEecCCeeCCCC
Confidence            99999999877777777776433211   000011111111       223466     678899999999999988765


Q ss_pred             -CeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCce----eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeE
Q psy16852        352 -KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG----EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPAT  426 (579)
Q Consensus       352 -~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~  426 (579)
                       .++.. ....  ..|.|.++..+|+|.|+|.|.|..|    .....+.|.|...+. ..+|.+..++....+..|+.++
T Consensus       170 ~~~~~~-~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~-~~~P~i~~~~~~~~v~~G~~v~  245 (339)
T 3o4o_C          170 NEKFLS-VRGT--THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKE-ETIPVIISPLKTISASLGSRLT  245 (339)
T ss_dssp             CSSEEE-CTTS--SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCC-CCCCEECCCSCCCCCCCCSCCC
T ss_pred             CceeEE-cCCc--ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCC-CCCCEEecCCceeEeccCCCEE
Confidence             33332 2222  2899999999999999999999887    466777888875432 2367787777777899999999


Q ss_pred             EEEEE---EeeC-CCeEEEeeCCEEcCCCCC-eeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        427 LKATV---TGRP-TPSICWYRGKEEILPDNG-HTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       427 l~C~~---~g~p-~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |.|.+   .|.| .+.+.|+++|..+..... ..+..   +.       .......|.+.              ..+.|.
T Consensus       246 L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~---~~-------~~~~~~~g~~~--------------~~~~L~  301 (339)
T 3o4o_C          246 IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE---GP-------RQEYSENNENY--------------IEVPLI  301 (339)
T ss_dssp             CCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEE---CC-------CEECCCSSSCE--------------EEECCE
T ss_pred             EEEEEECCCCCCCCceEEEEECCeeccccccccccee---cc-------eEEecccCceE--------------EEEEEE
Confidence            99999   8999 789999999987753311 00000   00       00000011000              123599


Q ss_pred             Eeecccccc-eeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        502 ISKITRDQI-GDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       502 i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      |.+++.+|+ |.|+|.|.|.+|.++..+.+.+.
T Consensus       302 i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~  334 (339)
T 3o4o_C          302 FDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH  334 (339)
T ss_dssp             ECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred             EEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence            999999998 99999999999999998888764

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=244.94  Aligned_cols=264  Identities=15%  Similarity=0.172  Sum_probs=177.0

Q ss_pred             ceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEeccC------------------ceE---EeCCeEEEEEcccCCCCCe
Q psy16852        220 ALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIVSK------------------DIE---TKDNVTKLVIKQTTKKTTG  277 (579)
Q Consensus       220 ~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i~~~------------------~~~---~~~~~~~l~i~~~~~~d~G  277 (579)
                      .+.+.+|+.++|.|.+.+. +.+.+.|+|++......                  ...   ......+|.|.+++.+|+|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            3457789999999998754 44479999854321100                  000   0123457999999999999


Q ss_pred             EEEEEEEcC-CeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEE-EeeeCCCeEEEEECCEEccCCCeEE
Q psy16852        278 KYEIRVVNE-AGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVV-VTGKPTPLVTWSHDGTPMKEGKEVT  355 (579)
Q Consensus       278 ~y~C~a~n~-~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~p~~~i~W~~~~~~~~~~~~~~  355 (579)
                      .|+|.|.|. .+.......+.+.+.+.........    ...........+.|. ..|.|.+.++|++++..+.......
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~  163 (308)
T 4fom_A           88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPD----SLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSF  163 (308)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSS----CCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEEC
T ss_pred             EEEEEEeeCCCcceeeeeEEEeeeccccccccccc----eeEEcCCceEEEEEEecCCcCCceEEEEECCccccccccee
Confidence            999999885 5555556666655444332221110    001111112233465 5789999999999998775432111


Q ss_pred             EEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeE--EEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEE
Q psy16852        356 IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA--VAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVT  432 (579)
Q Consensus       356 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~  432 (579)
                      ........+.|.|..+..+|+|.|+|.|.|..+..  ..++.|.|..      +|.+.. +.....+..|+.++|.|.+.
T Consensus       164 ~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~------~P~~~~~~~~~~~~~~g~~v~l~C~~~  237 (308)
T 4fom_A          164 PNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY------APEVSVTGYDGNWFVGRKGVNLKCNAD  237 (308)
T ss_dssp             TTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE------EEEECCBCCCSCEETTCCSCEEECCEE
T ss_pred             eeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec------CCeeEEcccceeeeeccccEEEEEEEe
Confidence            00000112479999999999999999999987654  3445555554      455543 33445677889999999999


Q ss_pred             eeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccce
Q psy16852        433 GRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG  511 (579)
Q Consensus       433 g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  511 (579)
                      |.|+| .+.|+|++..+.....                                        ......|.|.+++.+|+|
T Consensus       238 g~P~p~~v~W~k~~~~~~~~~~----------------------------------------~~~~~~l~i~~v~~~d~G  277 (308)
T 4fom_A          238 ANPPPFKSVWSRLDGQWPDGLL----------------------------------------ASDNTLHFVHPLTFNYSG  277 (308)
T ss_dssp             EESCEEEEECCBSSSCCCSSCB----------------------------------------CSTTEEECCSCCCSCCCS
T ss_pred             cCCCCcEEEEEECCeECCCcEE----------------------------------------EcCCeEEEECCCChhhCE
Confidence            99999 7999999877643211                                        112334778899999999


Q ss_pred             eEEEEEEeCCeeEEEEEEEEEe
Q psy16852        512 DVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       512 ~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .|+|.|.|.+|....++.|.|.
T Consensus       278 ~Y~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          278 VYICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             EEEEEEEETTEEEEEEEECCEE
T ss_pred             EEEEEEEeCCCcEEEEEEEEEE
Confidence            9999999999999999888875

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.97  E-value=4e-28  Score=227.74  Aligned_cols=271  Identities=23%  Similarity=0.339  Sum_probs=205.3

Q ss_pred             CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE
Q psy16852        104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV  183 (579)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  183 (579)
                      .+|.+...+..+.+.+|+.++|.|.+.+.|.+.+.|++++..+.............++...|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            46778878888999999999999999999999999999999887554332222234566799999999999999999999


Q ss_pred             cCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEe
Q psy16852        184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETK  260 (579)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~  260 (579)
                      |..|.......+.+......      ..|.....+....+..|+.+.|.|.+.+.|.+.+.|++++..+....   ....
T Consensus        83 n~~g~~~~~~~l~V~~~p~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  156 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVPAKI------HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT  156 (305)
T ss_dssp             ETTEEEEEEEEEEECEEEEE------CCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEEC
T ss_pred             cCCCCccceEEEEEecCCcc------CCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEc
Confidence            99888777777766532111      11222222345567889999999999999999999999998876543   2233


Q ss_pred             CCeEEEEEcc-cCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeec-------CeeEEEe
Q psy16852        261 DNVTKLVIKQ-TTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIH-------SEPVVVT  332 (579)
Q Consensus       261 ~~~~~l~i~~-~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~  332 (579)
                      .....|.|.+ +...|.|.|+|.|.|..|....+..+.|...+..+..+...........+.|...       ...|.+.
T Consensus       157 ~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~  236 (305)
T 2nzi_A          157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVE  236 (305)
T ss_dssp             SSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEE
T ss_pred             CCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEE
Confidence            4567899999 9999999999999999999888888888766666555555444455566666542       1245666


Q ss_pred             eeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEE
Q psy16852        333 GKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAA  394 (579)
Q Consensus       333 g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  394 (579)
                      ..+.+...|.+.+...              ...|.|.++...+.|.|+|.|.|..|.+..+.
T Consensus       237 ~~~~~~~~w~~~~~~~--------------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~  284 (305)
T 2nzi_A          237 KCATTAERWLRVGQAR--------------ETRYTVINLFGKTSYQFRVIAENKFGLSKPSE  284 (305)
T ss_dssp             EEETTSCCEEEEEEES--------------SSEEEECSCCSSCEEEEEEEEEETTEECCCCC
T ss_pred             EecCCCCccEECcccc--------------CceEEecCCCCCCeEEEEEEEEeCCcccCCcC
Confidence            6666777777654432              11799999999999999999999999775443

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=4.4e-29  Score=228.80  Aligned_cols=249  Identities=18%  Similarity=0.193  Sum_probs=181.6

Q ss_pred             CeEeccCCceeeCCCCeEEEEEEEEccCCC-eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       212 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                      |.+...+....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+...       ...|.|.+++.+|+|.|+|.+.|..+..
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~s~   74 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TPSYRITSASVNDSGEYRCQRGLSGRSD   74 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEESSSCCCC
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------CCeEEEecCCcccCeEEEEEEecCCccc
Confidence            455566666678899999999999988888 99999999988643       3569999999999999999998866543


Q ss_pred             EEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEE-eeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEc
Q psy16852        291 RTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVV-TGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAIS  369 (579)
Q Consensus       291 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~  369 (579)
                        ...+.|.  ... +.+...    ...........+.|.+ .+.|.+.+.|++++..+....      .   ...|.|.
T Consensus        75 --~~~l~v~--~~~-~~~~~~----~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~------~---~~~l~i~  136 (262)
T 3rjd_A           75 --PIQLEIH--RGW-LLLQVS----SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH------W---NSNLTIL  136 (262)
T ss_dssp             --CEEEEEE--CSS-EEEEES----CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE------E---CCCEEES
T ss_pred             --cEEEEEe--ccc-eEecCC----CeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC------C---CCeEEEE
Confidence              3334443  221 111110    1111122223345777 678889999999998874321      1   1279999


Q ss_pred             ccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC-C----eEEEeeC
Q psy16852        370 EVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-P----SICWYRG  444 (579)
Q Consensus       370 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~----~v~W~~~  444 (579)
                      ++..+|+|.|+|.|.|..+.....+.|.|....   .+|.+...+ ...+.+|+.++|.|.+.+.|. |    .+.|+++
T Consensus       137 ~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~---~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~  212 (262)
T 3rjd_A          137 KTNISHNGTYHCSGMGKHRYTSAGISVTVKELF---PAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMG  212 (262)
T ss_dssp             SCCGGGCEEEEEEEESSSEEEEECEEEEEECSS---CCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEET
T ss_pred             ECChhhCEEEEEEEeCCCCccccceEEEeccCC---CCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeC
Confidence            999999999999999999888888888887632   255565444 556889999999999999886 5    3788888


Q ss_pred             CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852        445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                      +..+...                                           ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus       213 ~~~~~~~-------------------------------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          213 SKTLRGR-------------------------------------------NTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             TEEEEEE-------------------------------------------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             CcEeccc-------------------------------------------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            8766311                                           123459999999999999999999999964


Q ss_pred             -EEEEEEEE
Q psy16852        525 -TCTATLSL  532 (579)
Q Consensus       525 -~~~~~l~v  532 (579)
                       ..+..+.|
T Consensus       250 ~~~s~~~~l  258 (262)
T 3rjd_A          250 LKRSPELEL  258 (262)
T ss_dssp             EEECCCEEE
T ss_pred             EEecCCeEE
Confidence             33344443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=4.3e-29  Score=236.49  Aligned_cols=268  Identities=15%  Similarity=0.106  Sum_probs=183.8

Q ss_pred             CceeeCCCCeEEEEEEEEcc---------CCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCe-EEEEEEEcCCe
Q psy16852        219 QALLVPKDSTVTLEAEYTGT---------PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTG-KYEIRVVNEAG  288 (579)
Q Consensus       219 ~~~~~~~g~~~~l~C~~~~~---------p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~a~n~~g  288 (579)
                      ..+.+.+|+.+.|.|.+.+.         |.+.+.|++++..+......  .....|.|.+++.+|+| .|+|.|.|..|
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g  114 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYTSNDSHRRYLCTVTTKNG  114 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETTEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecceEEEcCCChHhCCCcEEEEEEeCCC
Confidence            34568899999999998874         55699999998766432211  12347999999999999 99999999887


Q ss_pred             eeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeC-CCeEEEEECCEEccCC-CeEEEEECCCCeEEE
Q psy16852        289 EARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKP-TPLVTWSHDGTPMKEG-KEVTIYQDTDGLCKL  366 (579)
Q Consensus       289 ~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p-~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~l  366 (579)
                      .........+...+ +. .+......   .........+.|.+.|.| .+.+.|++++..+... .++... .  +  .|
T Consensus       115 ~~~~~~~~~v~~~~-p~-~~~~~~~~---~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~--~--~L  184 (329)
T 3oq3_B          115 DCVQGIVRSHIRKP-PS-CIPETYEL---GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-G--Q--NL  184 (329)
T ss_dssp             CEEEEEEEEEECCC-CS-CEEEEEET---TSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-T--T--EE
T ss_pred             ceeeEEEEEEEcCC-Cc-Eeccccce---EEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-C--C--EE
Confidence            64444333222222 11 11111110   111122234468889999 8999999999998633 333332 2  2  89


Q ss_pred             EEcccCCCCCEEEEEEEEcC--ceeE----EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeC---CC
Q psy16852        367 AISEVFPENAGLYSCTAVNP--VGEA----VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP---TP  437 (579)
Q Consensus       367 ~i~~~~~~d~G~Y~C~a~n~--~g~~----~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~  437 (579)
                      .|.++..+|+|.|+|.|.|.  .|..    ...+.|.|...+.. ..|.+  .+....+.+|+.++|.|.+.|.|   .|
T Consensus       185 ~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~-~~~~~--~~~~~~v~~G~~~~l~C~~~g~p~~~~~  261 (329)
T 3oq3_B          185 IIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH-RFKLI--LDPKINVTIGEPANITCTAVSTSLLVDD  261 (329)
T ss_dssp             EECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCC-CEEEE--CCSEEEECTTSCEEEEEEEEETTCCTTC
T ss_pred             EEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCC-CCcee--cCCeeEEecCCCEEEEEEEEECCCCCCC
Confidence            99999999999999999986  4432    23366777653211 01333  45557899999999999999998   77


Q ss_pred             -eEEEeeCCEEcCCCCC-eeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccce-eEE
Q psy16852        438 -SICWYRGKEEILPDNG-HTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG-DVT  514 (579)
Q Consensus       438 -~v~W~~~~~~l~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~  514 (579)
                       .+.|+++|..+..... ......                               .......+.|.|.+++.+|+| .|+
T Consensus       262 i~v~W~~~g~~i~~~~~~~~~~~~-------------------------------~~~~~~~~~L~I~~v~~~D~G~~Y~  310 (329)
T 3oq3_B          262 VLIDWENPSGWIIGLDFGVYSILT-------------------------------SSGGITEATLYFENVTEEYIGNTYT  310 (329)
T ss_dssp             CEEEEECTTSCBCCBCSSEEEEEE-------------------------------EETTEEEEEEEESSCCGGGTTCEEE
T ss_pred             cEEEEEECCeeeeccCCceeeeec-------------------------------ccCceeEeEEEEEeccHHHCCCcEE
Confidence             8999999987533222 111100                               000013566999999999999 999


Q ss_pred             EEEEeCCeeEEEEEEEEE
Q psy16852        515 CRAENVAGSVTCTATLSL  532 (579)
Q Consensus       515 C~a~n~~g~~~~~~~l~v  532 (579)
                      |.|.|..|....++.|.|
T Consensus       311 C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          311 CRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEEecCCceEEEEEEEe
Confidence            999999999999988876

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.97  E-value=5.1e-29  Score=231.85  Aligned_cols=266  Identities=15%  Similarity=0.189  Sum_probs=178.7

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeC-C--EEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-S--VSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~-~--~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      |.|...+.++.+.+|++++|.|.+.+.    +.|++++..+.    ....... +  ...|.|.+++.+|+|.|+|.|.|
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   72 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP----QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHND   72 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS----EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc----cceeccCCCceeEEEEEccCChhhCEEEEEEEcc
Confidence            566667778999999999999999763    99999998873    1122221 2  47899999999999999999998


Q ss_pred             CCeee-EEEEEEEEEecccCCCCCceecCCC--ceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852         84 IGGVA-TCSANLIVLEKEESGEAPKFTKPLK--PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT  160 (579)
Q Consensus        84 ~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  160 (579)
                      ..|.. .....+.|.....  ..+.+.....  .+.+.+|+.+.|.|.+. .|.+.+.|++.+......    ...+...
T Consensus        73 ~~g~~~~~~~~~~v~v~~p--~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~----~~~~~~~  145 (289)
T 3mjg_X           73 SRGLETDERKRLYIFVPDP--TVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP----VPYDHQR  145 (289)
T ss_dssp             ------CCCEEEEEECCCT--TCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC----CCEETTT
T ss_pred             cCCCCcCcEEeEEEEEECC--CcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc----eeecCCc
Confidence            87652 2233444433210  1111111111  16688999999999998 678899999875322111    1111111


Q ss_pred             CeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC
Q psy16852        161 GECVLSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP  239 (579)
Q Consensus       161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p  239 (579)
                      +  .+     ...|+|.|+|.+.+..+..... ..+.+..         ..+|.+...+....+.+|+.+.|.|.+.+.|
T Consensus       146 ~--~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~---------~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p  209 (289)
T 3mjg_X          146 G--FS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQ---------VSSINVSVNAVQTVVRQGENITLMCIVIGNE  209 (289)
T ss_dssp             E--EE-----ECCCSSEEEEEEEETTEEEECCCEEEEECC---------CCCCCCEEEESCSEEETTSCEEEEEEEESCS
T ss_pred             C--ee-----eeccCcEEEEEEEeCCceeeeeeEEEEecC---------CCCCCcEEeCCcceeEcCCCEEEEEEECCCC
Confidence            1  11     2569999999999876654332 2333321         1244444444556688999999999999999


Q ss_pred             CCeEEEEECCEEeccCc--e-EE-----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccc
Q psy16852        240 TPEVKWFKNGKEIVSKD--I-ET-----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA  303 (579)
Q Consensus       240 ~~~v~W~~~~~~i~~~~--~-~~-----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~  303 (579)
                      .+.+.|+++++......  . ..     ......|.|.++..+|+|.|+|.|.|..|....+..+.|...+.
T Consensus       210 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          210 VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES  281 (289)
T ss_dssp             SBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred             CcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence            99999998765433211  1 11     12447899999999999999999999999999998888875443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.97  E-value=3.1e-29  Score=229.79  Aligned_cols=239  Identities=18%  Similarity=0.235  Sum_probs=175.4

Q ss_pred             CceeeeCCCCEEEEEEEEe-eCCC--eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCC---CCCCCE--EEEEEEEcCC
Q psy16852         14 QPVVSHQEQPALFTCKVEG-HPLP--TMTWQKDGTELHATEHYLITTVESVSTLEIINP---TKEDIG--VYTCKATNIG   85 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~-~~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~---~~~d~G--~Y~C~~~~~~   85 (579)
                      .+..+.+|+.++|.|.+.+ .|.+  .|.|+++|..+..    .....+.  .|.+..+   +.+|+|  .|+|.+.|..
T Consensus        11 ~~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~   84 (265)
T 2oz4_A           11 SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGN   84 (265)
T ss_dssp             CCSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETT
T ss_pred             cCceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcceEEEEEecCC
Confidence            3457899999999999998 6766  9999999998864    2222232  4455444   778888  4999999999


Q ss_pred             eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEE
Q psy16852         86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL  165 (579)
Q Consensus        86 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l  165 (579)
                      |.....+.|.|...+    +|.+.  .....+.+|+.+.|.|.+.  |.+.+.|  ++..+...          +....|
T Consensus        85 ~~~~~~~~l~V~~~p----~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~----------~~~~~l  144 (265)
T 2oz4_A           85 QSQETLQTVTIYSFP----APNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL----------GPRAQL  144 (265)
T ss_dssp             EEEEEEEEEEEECCC----CCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCC----------SSEECC
T ss_pred             CCcEEEEEEEEeCCC----Cceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCC----------CCcEEE
Confidence            988888888887643    23333  2345677899999999987  8899999  66655221          123568


Q ss_pred             EECcCCCCCCeEEEEEEEcCC-ceeE---EEEEEEEeeccccCCCCccCCCeEecc--CCceeeCCCCeEEEEEEEEccC
Q psy16852        166 SISEATPQDEAVYSVKAVNTF-GRAE---CRANLVLRKATTIDKPRVLEAPTIVRP--LQALLVPKDSTVTLEAEYTGTP  239 (579)
Q Consensus       166 ~i~~~~~~d~G~Y~C~~~~~~-~~~~---~~~~~~v~~~~~~~~~~~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~p  239 (579)
                      .|..+..+|+|.|+|.+.|.. |...   ....+.+.           .+|.+...  +....+.+|+.+.|.|.+.|.|
T Consensus       145 ~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~-----------~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P  213 (265)
T 2oz4_A          145 LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL-----------YGPRLDERDCPGNWTWPENSQQTPMCQAWGNP  213 (265)
T ss_dssp             EEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE-----------EEEECCGGGSCSEEEEETTCEECCCCCCEEES
T ss_pred             EEccccccCCceEEEEEEcCCCCCcccccccEEEEEE-----------eCCccccccCCCccEEcCCCeEEEEeECccCC
Confidence            899999999999999998543 5543   33444443           23333222  3455688999999999999999


Q ss_pred             CCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        240 TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       240 ~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      .+.+.|++++..+....        .+  ..++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       214 ~p~i~W~~~~~~~~~~g--------~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          214 LPELKCLKDGTFPLPIG--------ES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             CCEEEEEETTTEECCTT--------SC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCeEEEEECCcccCCCC--------cE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence            99999999997332211        11  2377899999999999999988888777764

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.97  E-value=1.5e-28  Score=233.68  Aligned_cols=274  Identities=16%  Similarity=0.237  Sum_probs=190.8

Q ss_pred             ceecCCCceEEccCCcEEEEEEEEee----cCCeEEEEECC--E-------------EccCCCCceEEE-cCCCCeEEEE
Q psy16852        107 KFTKPLKPVIAEAQSPATLKATVTGR----PTPSICWYRGK--E-------------EILPDNGHTMEF-NPTTGECVLS  166 (579)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~~~--~-------------~~~~~~~~~~~~-~~~~~~~~l~  166 (579)
                      .+...+..+.+.+|+.+.|.|.+.+.    +.+.+.|++++  .             .+......++.. ....+..+|.
T Consensus        16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~   95 (331)
T 3u83_A           16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR   95 (331)
T ss_dssp             -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred             ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence            34445566789999999999998765    44689999953  1             111111222222 2233456799


Q ss_pred             ECcCCCCCCeEEEEE-EEcCCceeEEEEEEEEeeccccCCCCccCCCeE--eccCCceeeCCC---CeEEEEEE-EEccC
Q psy16852        167 ISEATPQDEAVYSVK-AVNTFGRAECRANLVLRKATTIDKPRVLEAPTI--VRPLQALLVPKD---STVTLEAE-YTGTP  239 (579)
Q Consensus       167 i~~~~~~d~G~Y~C~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~--~~~~~~~~~~~g---~~~~l~C~-~~~~p  239 (579)
                      |.+++.+|+|.|+|. +.+..+.......+.|.           .+|.+  ........+.+|   +.+.|.|. +.+.|
T Consensus        96 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p  164 (331)
T 3u83_A           96 LSRLELEDEGVYICEFATFPTGNRESQLNLTVM-----------AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKP  164 (331)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE-----------BCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBS
T ss_pred             EcccCcccCcEEEEEEEecCCCccEEEEEEEEe-----------cCCcceeecCCCceeecCCCccceEEEEEEecCCcC
Confidence            999999999999998 55556666666666654           34443  223455667778   78999997 77899


Q ss_pred             CCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEeccceeeeeeeeeeccccCc
Q psy16852        240 TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMDVRVESHPTAS  319 (579)
Q Consensus       240 ~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~  319 (579)
                      .+.+.|++++.....                                      .  .... ..                 
T Consensus       165 ~~~i~W~~~~~~~~~--------------------------------------~--~~~~-~~-----------------  186 (331)
T 3u83_A          165 PSVVSWETRLKGEAE--------------------------------------Y--QEIR-NP-----------------  186 (331)
T ss_dssp             CCEEEEEESSCCEEE--------------------------------------E--EEEE-CT-----------------
T ss_pred             CceEEEEcCCCCccc--------------------------------------c--ceeE-CC-----------------
Confidence            999999986311000                                      0  0000 00                 


Q ss_pred             eeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852        320 FQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE  399 (579)
Q Consensus       320 ~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  399 (579)
                                                     ...+.+      .+.|.|..+..+|+|.|+|.|.|..|....++.|.|.
T Consensus       187 -------------------------------~~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~  229 (331)
T 3u83_A          187 -------------------------------NGTVTV------ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ  229 (331)
T ss_dssp             -------------------------------TSCEEE------EEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEE
T ss_pred             -------------------------------CCcEEE------EEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEe
Confidence                                           000000      0158888888899999999999999988888888887


Q ss_pred             ecccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeCCCe-EEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCc
Q psy16852        400 EKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE  477 (579)
Q Consensus       400 ~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  477 (579)
                      .      +|.+. .+.....+.+|+.++|.|.+.|.|.|. +.|++++..+....  .+                     
T Consensus       230 ~------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~~---------------------  280 (331)
T 3u83_A          230 Y------EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV--EA---------------------  280 (331)
T ss_dssp             E------EEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EE---------------------
T ss_pred             c------CCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc--ee---------------------
Confidence            6      44444 344556688999999999999999997 99999988774321  00                     


Q ss_pred             eeEEEEeecceeeeeeeCCeeEEEEe-ecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        478 AVYSVKASSTETKIMTDGNRSVLLIS-KITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       478 g~y~c~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                        ..+.|.|. ++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       281 ------------------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  319 (331)
T 3u83_A          281 ------------------QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT  319 (331)
T ss_dssp             ------------------ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred             ------------------cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence                              12349999 899999999999999999999999999876

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.96  E-value=9.6e-30  Score=239.75  Aligned_cols=263  Identities=11%  Similarity=0.064  Sum_probs=177.7

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .+-+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|+|..+....    ........|.|.+++.+|+|.|+|.|.
T Consensus        21 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~   94 (316)
T 3vh8_G           21 GQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF----HGRIFQESFNMSPVTTAHAGNYTCRGS   94 (316)
T ss_dssp             ---CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH----HHCCBSSCEEECSCCGGGCEEEEEEEB
T ss_pred             CCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee----cCCcceEEEEECCCCcccCeEEEEEEE
Confidence            456788888888 568899999999999877 56899999998754311    011123679999999999999999998


Q ss_pred             cCC-----eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEc
Q psy16852         83 NIG-----GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN  157 (579)
Q Consensus        83 ~~~-----g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  157 (579)
                      +..     +..+..+.+.|....   .+|.+...+... +.+|+.++|.|.+. .+.+.+.|++++..+........ ..
T Consensus        95 ~~~~~~~~~~~s~~~~l~V~~~~---~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~-~~  168 (316)
T 3vh8_G           95 HPHSPTGWSAPSNPVVIMVTGNH---RKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQ-IH  168 (316)
T ss_dssp             CSSSSSSBCCCCCCEEEEEECSS---CCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECE-EE
T ss_pred             cCCCCcceecCCCcEEEEEecCC---CCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeee-ec
Confidence            632     233445667775432   234555444444 78999999999985 46679999999886643221111 11


Q ss_pred             CCCCeEEEEECcCCCCCCeEEEEEEEcCCcee-----EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEE
Q psy16852        158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRA-----ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLE  232 (579)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~  232 (579)
                      .......|.|.+++.+|+|.|+|.+.|..+..     .....+.+..        ...+|.+...+.. .+.+|+.++|.
T Consensus       169 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~--------~~~~p~i~~~~~~-~v~~G~~v~L~  239 (316)
T 3vh8_G          169 DGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG--------PYEKPSLSAQPGP-KVQAGESVTLS  239 (316)
T ss_dssp             TTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC--------SSCCCEEEEESCS-CCCTTSCCEEE
T ss_pred             CCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC--------CCCCCeEEeCCCC-eecCCCcEEEE
Confidence            12234689999999999999999999987631     2223344431        1234555544433 57889999999


Q ss_pred             EEEEccCCCeEEEEECCEEeccCceE-E---eCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        233 AEYTGTPTPEVKWFKNGKEIVSKDIE-T---KDNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       233 C~~~~~p~~~v~W~~~~~~i~~~~~~-~---~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      |.+. .|.+.+.|+++|..+...... .   ......|.|.+++  |+|.|+|.|.|..+.
T Consensus       240 C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          240 CSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             EEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             EECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence            9986 577899999999766532211 1   1123689999998  999999999997653

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.96  E-value=8.8e-29  Score=234.47  Aligned_cols=274  Identities=12%  Similarity=0.184  Sum_probs=173.7

Q ss_pred             eEeccCCceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEec----cC------ceEEe-------CCeEEEEEcccCCC
Q psy16852        213 TIVRPLQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIV----SK------DIETK-------DNVTKLVIKQTTKK  274 (579)
Q Consensus       213 ~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i~----~~------~~~~~-------~~~~~l~i~~~~~~  274 (579)
                      .+..++....+.+|+.+.|.|.+.+. |.+.+.|++++.+..    ..      .....       .....|.|.+++.+
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA   84 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence            34555667789999999999999987 888999999874321    10      11110       34457999999999


Q ss_pred             CCeEEEEEEEcCCeeeE-----EEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCC--eEEEEECCEE
Q psy16852        275 TTGKYEIRVVNEAGEAR-----TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP--LVTWSHDGTP  347 (579)
Q Consensus       275 d~G~y~C~a~n~~g~~~-----~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~--~i~W~~~~~~  347 (579)
                      |+|.|+|.|.|..+...     ....+.|...+..+.....     ...........+.|.+.|.|++  .+.|+++|..
T Consensus        85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-----~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~  159 (327)
T 2wng_A           85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-----AARATPQHTVSFTCESHGFSPRDITLKWFKNGNE  159 (327)
T ss_dssp             GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-----SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-----ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEE
Confidence            99999999999765311     2345555544433222111     1111223334567999998876  8999999999


Q ss_pred             ccCCCeEEEEECCCC----eEEEEEcccCCCCCEEEEEEEEcCceeE---EEEEEEEEEecccCCCCCeeecCCCceeee
Q psy16852        348 MKEGKEVTIYQDTDG----LCKLAISEVFPENAGLYSCTAVNPVGEA---VAAATLAVEEKEESGEAPKFTKPLKPVIAE  420 (579)
Q Consensus       348 ~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~  420 (579)
                      +............++    .+.|.|.....+|.|.|+|.|.|..+..   ..+..+.+.    ...+|.+...+..  +.
T Consensus       160 l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~----v~~~P~i~~~~~~--~~  233 (327)
T 2wng_A          160 LSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET----IRVPPTLEVTQQP--VR  233 (327)
T ss_dssp             CCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT----BCBCCEEEEEEEC--CS
T ss_pred             ccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc----cCCCCEEEEecCC--cC
Confidence            876543222111222    2357787777777899999999987752   333333221    1236777654433  77


Q ss_pred             cCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      +|+.++|.|.+.|.|++  .+.|+++|..+..+....                ......|.|.+.              +
T Consensus       234 ~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~----------------~~~~~~g~~~~~--------------~  283 (327)
T 2wng_A          234 AENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAST----------------VTENKDGTYNWM--------------S  283 (327)
T ss_dssp             STTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCS----------------CEECTTSCEEEE--------------E
T ss_pred             CCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCc----------------eEECCCCcEEEE--------------E
Confidence            99999999999996544  899999998875321111                112223444333              3


Q ss_pred             EEEEeecccccceeEEEEEEeCCeeEEEE
Q psy16852        499 VLLISKITRDQIGDVTCRAENVAGSVTCT  527 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  527 (579)
                      .|.|..+..+|+|.|+|.|.|..|.....
T Consensus       284 ~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~  312 (327)
T 2wng_A          284 WLLVNVSAHRDDVKLTCQVEHDGQPAVSK  312 (327)
T ss_dssp             EEEC-------CCEEEEEEEETTCCCEEE
T ss_pred             EEEEccccccCCCEEEEEEEeCCCCCchh
Confidence            49999999999999999999999865433

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.96  E-value=2e-28  Score=224.35  Aligned_cols=236  Identities=21%  Similarity=0.266  Sum_probs=171.3

Q ss_pred             eeCCCCeEEEEEEEEc-cCCC--eEEEEECCEEeccCceEEeCCeEEEEEccc---CCCCCe--EEEEEEEcCCeeeEEE
Q psy16852        222 LVPKDSTVTLEAEYTG-TPTP--EVKWFKNGKEIVSKDIETKDNVTKLVIKQT---TKKTTG--KYEIRVVNEAGEARTS  293 (579)
Q Consensus       222 ~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~---~~~d~G--~y~C~a~n~~g~~~~~  293 (579)
                      .+.+|+.++|.|.+.+ .|.+  .+.|+++|..+... ......  .+.+..+   ...|+|  .|+|.|.|..|.....
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~-~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~   90 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-VTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL   90 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE-EEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce-EeeCCC--eEEEEeecccccccCCcceEEEEEecCCCCcEEE
Confidence            5788999999999998 7776  99999999988652 122222  4555444   677877  4999999999988777


Q ss_pred             EEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCC
Q psy16852        294 GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFP  373 (579)
Q Consensus       294 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  373 (579)
                      ..+.|...+.+.+.+.      ...........+.|.+.  |.+.++|  +|..+....         ....|.|..+..
T Consensus        91 ~~l~V~~~p~p~~~~~------~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~---------~~~~l~i~~~~~  151 (265)
T 2oz4_A           91 QTVTIYSFPAPNVILT------KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG---------PRAQLLLKATPE  151 (265)
T ss_dssp             EEEEEECCCCCEEEES------CSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS---------SEECCEEECCGG
T ss_pred             EEEEEeCCCCceeecC------CceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC---------CcEEEEEccccc
Confidence            7777765444333321      11111223334457776  8999999  777764322         234788999999


Q ss_pred             CCCEEEEEEEEcCc-eeEE---EEEEEEEEecccCCCCCeeecC--CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEE
Q psy16852        374 ENAGLYSCTAVNPV-GEAV---AAATLAVEEKEESGEAPKFTKP--LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE  447 (579)
Q Consensus       374 ~d~G~Y~C~a~n~~-g~~~---~~~~l~v~~~~~~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~  447 (579)
                      +|+|.|+|.|.|.. |...   ..+.|.|..      +|.+...  +....+.+|+.++|.|.+.|.|.|.+.|++++..
T Consensus       152 ~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~------~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~  225 (265)
T 2oz4_A          152 DNGRSFSCSATLEVAGQLIHKNQTRELRVLY------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF  225 (265)
T ss_dssp             GTTEEEEEEEEEECSSSEEEEEEEEEEEEEE------EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTE
T ss_pred             cCCceEEEEEEcCCCCCcccccccEEEEEEe------CCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcc
Confidence            99999999998544 6554   667788876      3444332  4466789999999999999999999999998863


Q ss_pred             cCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEE
Q psy16852        448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT  527 (579)
Q Consensus       448 l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  527 (579)
                      +....           .                                   +.  .++.+|+|.|+|.|.|..|....+
T Consensus       226 ~~~~g-----------~-----------------------------------~~--~v~~~d~G~Y~C~a~N~~G~~~~~  257 (265)
T 2oz4_A          226 PLPIG-----------E-----------------------------------SV--TVTRDLEGTYLCRARSTQGEVTRE  257 (265)
T ss_dssp             ECCTT-----------S-----------------------------------CE--ECCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cCCCC-----------c-----------------------------------EE--EeehhhCeEEEEEEECCCCcEEEE
Confidence            22111           0                                   21  377899999999999999999999


Q ss_pred             EEEEEe
Q psy16852        528 ATLSLL  533 (579)
Q Consensus       528 ~~l~v~  533 (579)
                      +.|.|+
T Consensus       258 ~~l~V~  263 (265)
T 2oz4_A          258 VTVNVL  263 (265)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999986

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.6e-28  Score=228.42  Aligned_cols=269  Identities=16%  Similarity=0.132  Sum_probs=168.6

Q ss_pred             cCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCC--eEEEEEcccCCCCCeEEEEEEEcCCee-eEEE
Q psy16852        217 PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN--VTKLVIKQTTKKTTGKYEIRVVNEAGE-ARTS  293 (579)
Q Consensus       217 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~a~n~~g~-~~~~  293 (579)
                      ......+.+|+.+.|.|.+.+.    +.|++++..+..........  ...|.|.+++.+|+|.|+|.|.|..|. ...+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   81 (289)
T 3mjg_X            6 PGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDER   81 (289)
T ss_dssp             SCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCC
T ss_pred             CCCeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcE
Confidence            3445668899999999998764    99999998763221111122  478999999999999999999998865 2233


Q ss_pred             EEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCC
Q psy16852        294 GSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFP  373 (579)
Q Consensus       294 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  373 (579)
                      ..+.|.+.......+..................+.|.+. .|.+.++|++.+........   .. ...  .+.    ..
T Consensus        82 ~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~---~~-~~~--~~~----~~  150 (289)
T 3mjg_X           82 KRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP---YD-HQR--GFS----GI  150 (289)
T ss_dssp             EEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCC---EE-TTT--EEE----EC
T ss_pred             EeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcccee---ec-CCc--Cee----ee
Confidence            445555442221111100000000011112223346666 67788889886522221111   01 111  111    25


Q ss_pred             CCCEEEEEEEEcCceeEEE-EEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC
Q psy16852        374 ENAGLYSCTAVNPVGEAVA-AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN  452 (579)
Q Consensus       374 ~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~  452 (579)
                      .|+|.|+|.|.|..+.... ...+.|...    .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++.......
T Consensus       151 ~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~----~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~  226 (289)
T 3mjg_X          151 FEDRSYICKTTIGDREVDSDAYYVYRLQV----SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV  226 (289)
T ss_dssp             CCSSEEEEEEEETTEEEECCCEEEEECCC----CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCC
T ss_pred             ccCcEEEEEEEeCCceeeeeeEEEEecCC----CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcc
Confidence            7999999999987765543 345555542    35666665566779999999999999999999999998876543221


Q ss_pred             CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        453 GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       453 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .......              ..                ......+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus       227 ~~~~~~~--------------~~----------------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v  276 (289)
T 3mjg_X          227 EPVTDFL--------------LD----------------MPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI  276 (289)
T ss_dssp             CCEEEES--------------CT----------------TTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ccccccc--------------CC----------------cceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEE
Confidence            1111100              00                00123466999999999999999999999999999999998


Q ss_pred             ee
Q psy16852        533 LP  534 (579)
Q Consensus       533 ~~  534 (579)
                      ..
T Consensus       277 ~~  278 (289)
T 3mjg_X          277 TV  278 (289)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=2.3e-28  Score=227.85  Aligned_cols=274  Identities=15%  Similarity=0.160  Sum_probs=187.5

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      .+|.+...+....+.+|+.+.|.|.+.+.    +.|++++...  ...........|.|.+++.+|+|.|+|.+.|..+.
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~   76 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPH--WTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG   76 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSS--CEECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCc--eEEeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence            46777777778889999999999998763    8999765321  11222345679999999999999999999998777


Q ss_pred             eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEEC-CEEccCCCeEEEEECCCCeEEE
Q psy16852        290 ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHD-GTPMKEGKEVTIYQDTDGLCKL  366 (579)
Q Consensus       290 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~l  366 (579)
                      ....+.+.|...+...........     ........+.|.+.+ |.  +.+.|+++ +..+..........  .+  .|
T Consensus        77 ~~~~~~l~V~~~~~~~~~~~~~~~-----v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~--~L  146 (292)
T 4dkd_C           77 GSAAIHLYVKDPARPWNVLAQEVV-----VFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSP--WH--GF  146 (292)
T ss_dssp             CCEEECCEECCSSCCEEESCSEEE-----EETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCS--SS--CC
T ss_pred             cceEEEEEEcCccccccccCCeEE-----EcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccC--Cc--eE
Confidence            655666555433322111111111     111222334588887 44  78999987 55555544443221  22  49


Q ss_pred             EEcccCCCCCEEEEEEEEcCceeEEE-EEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC-CeEEEeeC
Q psy16852        367 AISEVFPENAGLYSCTAVNPVGEAVA-AATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYRG  444 (579)
Q Consensus       367 ~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~  444 (579)
                      .|.++..+|+|.|+|.|.|..+.... .+.|.|...  ...+|.+...+....+.+|+.++|.|.+.+.|+ +.+.|+++
T Consensus       147 ~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~--~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~  224 (292)
T 4dkd_C          147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKV--IPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN  224 (292)
T ss_dssp             EETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECC--CCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBS
T ss_pred             EECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCC--CCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCC
Confidence            99999999999999999988775543 677777752  223778877777777789999999999998775 47889998


Q ss_pred             CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852        445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                      +..+..........                   +.              ....+.|+|.+++.+|+|.|+|.|.|..|..
T Consensus       225 ~~~~~~~~~~~~~~-------------------~~--------------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  271 (292)
T 4dkd_C          225 NTKLAIPQQSDFHN-------------------NR--------------YQKVLTLNLDQVDFQHAGNYSCVASNVQGKH  271 (292)
T ss_dssp             SCCCCCCBEEEEET-------------------TE--------------EEEEEEEEESSCCTTSCEEEEEEEECSSCEE
T ss_pred             CcccccCccceecc-------------------ce--------------eeeEEEEEECccChhcCeEEEEEEecCCCCc
Confidence            87664332211100                   00              1123569999999999999999999999999


Q ss_pred             EEEEEEEEee
Q psy16852        525 TCTATLSLLP  534 (579)
Q Consensus       525 ~~~~~l~v~~  534 (579)
                      ..++.|.|..
T Consensus       272 ~~~~~l~V~~  281 (292)
T 4dkd_C          272 STSMFFRVVE  281 (292)
T ss_dssp             EEEEEECC--
T ss_pred             eeEEEEEEee
Confidence            9999999863

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.96  E-value=2.5e-28  Score=230.58  Aligned_cols=278  Identities=15%  Similarity=0.156  Sum_probs=178.4

Q ss_pred             cCCCCccccccCceeeeCC--CCEEEEEEEEee-C-CCeeEEEECCEEecCCCCE-EEEEeCC----EEEEEEcCCCCCC
Q psy16852          3 EVLAPRFIEKIQPVVSHQE--QPALFTCKVEGH-P-LPTMTWQKDGTELHATEHY-LITTVES----VSTLEIINPTKED   73 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G--~~~~l~C~~~~~-~-~~~v~W~~~g~~~~~~~~~-~~~~~~~----~~~L~i~~~~~~d   73 (579)
                      +..||.+...+.......|  +.++|.|.+.+. | .+.|+|+|||..+...... .....++    .+.|.|.....+|
T Consensus         4 ~~~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d   83 (323)
T 2wqr_A            4 DFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLS   83 (323)
T ss_dssp             CCCCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHT
T ss_pred             CCCCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCC
Confidence            4567887776555444445  699999999886 3 4689999999988654321 1111122    2468888888889


Q ss_pred             CEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-CC---eEEEEECCEEccCC
Q psy16852         74 IGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TP---SICWYRGKEEILPD  149 (579)
Q Consensus        74 ~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~---~i~W~~~~~~~~~~  149 (579)
                      +|.|+|+|.|..+.....+.+.+...  ...++.+...+....+.+|+.+.|.|.+.+.+ .+   .|.||++++.....
T Consensus        84 ~g~Y~C~a~n~~~~~~~~~~~~~~~~--~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~  161 (323)
T 2wqr_A           84 DRTYTCQVTYQGHTFEDSTKKCADSN--PRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH  161 (323)
T ss_dssp             TCCEEEEEEETTEEEEEEECCCCCSS--GGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCC
T ss_pred             CCcEEEEEEeCCCCcceeeecCCCCC--CCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccc
Confidence            99999999998776544332211100  01122223344445577899999999998864 45   99999976443322


Q ss_pred             CCceEEEcCCC---CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCC
Q psy16852        150 NGHTMEFNPTT---GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD  226 (579)
Q Consensus       150 ~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g  226 (579)
                      ..........+   ..+.|.|.++..+|+|.|+|.+.|..+.....  +.+....     ....+|.+...+.......|
T Consensus       162 ~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~--~~v~~~~-----~~~~~P~v~~~~~~~~~~~g  234 (323)
T 2wqr_A          162 STRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALM--RSTTKTS-----GPRAAPEVYAFATPEWPGSR  234 (323)
T ss_dssp             CCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEE--EEECCCC-----SCCBCCEEEEEECCCCTTCT
T ss_pred             ccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCee--eEEEccC-----CCCCCCEEEEeCCChHHhcC
Confidence            11111111111   23579999999999999999999986433222  2222100     01234554332222122349


Q ss_pred             CeEEEEEEEEc-cCCC-eEEEEECCEEeccCceEE----------eCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        227 STVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDIET----------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       227 ~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~~~~----------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      +.++|.|.+.+ .|.+ .+.|+++|..+.......          ....+.|.|..+..+|+|.|+|.|.|....
T Consensus       235 ~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          235 DKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            99999999998 4544 899999999886542111          112357999999999999999999998765

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.95  E-value=1.2e-26  Score=201.98  Aligned_cols=188  Identities=33%  Similarity=0.518  Sum_probs=159.6

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC--CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .||.|...|.++.+.+|++++|.|.+.+.|.+.+.|+++|..+....  ++......+...|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            47899999999999999999999999999999999999999887653  5666677778999999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852         83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE  162 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  162 (579)
                      +..|.......+.|....   .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+..+  +..
T Consensus        84 n~~~~~~~~~~l~v~~~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~  158 (194)
T 2a38_A           84 NGSGQATSTAELLVKAET---APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE--GDL  158 (194)
T ss_dssp             ETTEEEEEEEEEEEECCC---EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEE--TTE
T ss_pred             cCCceEeEEEEEEEccCC---CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEc--CCE
Confidence            999988888888887432   244566666778899999999999999999999999999999876665554433  345


Q ss_pred             EEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852        163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL  197 (579)
Q Consensus       163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v  197 (579)
                      ..|.|.++..+|+|.|+|.|.|..|....+..+.|
T Consensus       159 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            68999999999999999999999998777666654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.95  E-value=2.8e-27  Score=225.40  Aligned_cols=276  Identities=15%  Similarity=0.175  Sum_probs=175.9

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEe-----------------cCCCCEEEEEe--CCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTEL-----------------HATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~-----------------~~~~~~~~~~~--~~~~~L~i   66 (579)
                      +..|.++.+.+|++++|.|.+.+.+  .+.+.|||+  |..+                 ....++.+...  .+..+|+|
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (344)
T 1za6_B            4 LVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVEL   83 (344)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             eeCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEE
Confidence            3457788999999999999998763  568999997  3322                 01345555543  35689999


Q ss_pred             cCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCE
Q psy16852         67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKE  144 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~  144 (579)
                      .+++.+|+|.|+|.+.+..+.....+.|.|...+  ..+|.+........+.+|+.++|.|.+.+. |. +.|.|++++.
T Consensus        84 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~  161 (344)
T 1za6_B           84 SSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  161 (344)
T ss_dssp             CSCCGGGCEEEEEEETTTTCEECCCEEEEECSSC--CBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTB
T ss_pred             CCCCcccCEEEEEEEecCcceecCcEEEEEecCC--CCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCc
Confidence            9999999999999998865544455677776421  123444332222345789999999999887 54 7999999987


Q ss_pred             EccCCCCceEEEcCCC---CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeec------------cccC-CCCc
Q psy16852        145 EILPDNGHTMEFNPTT---GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA------------TTID-KPRV  208 (579)
Q Consensus       145 ~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~------------~~~~-~~~~  208 (579)
                      .+........ ....+   ....|.|.++..+| |.|+|.|.|..+.......+.+.+.            .... ....
T Consensus       162 ~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~  239 (344)
T 1za6_B          162 TSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQ  239 (344)
T ss_dssp             CTTEEECCCE-ECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------C
T ss_pred             cCceeECCCe-ECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCC
Confidence            5321000000 00000   12479999998888 9999999998876544333321110            0000 0012


Q ss_pred             cCCCeEeccCCceeeCCCCeEEEEEEEEcc-C-CCeEEEEECCEEeccCc---eEEe-C----CeEEEEEcccCCCCCeE
Q psy16852        209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGT-P-TPEVKWFKNGKEIVSKD---IETK-D----NVTKLVIKQTTKKTTGK  278 (579)
Q Consensus       209 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~i~~~~---~~~~-~----~~~~l~i~~~~~~d~G~  278 (579)
                      ..+|.+...........|..+.|.|.+.|. | .+.+.|+++|..+....   .... +    ..+.|.|.....+|.|.
T Consensus       240 ~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~  319 (344)
T 1za6_B          240 PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV  319 (344)
T ss_dssp             CBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCE
T ss_pred             CcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCe
Confidence            245554433322222346669999999985 4 35899999998775422   1111 1    12456677776778999


Q ss_pred             EEEEEEcCCee
Q psy16852        279 YEIRVVNEAGE  289 (579)
Q Consensus       279 y~C~a~n~~g~  289 (579)
                      |+|+|.|....
T Consensus       320 YtC~a~~~~l~  330 (344)
T 1za6_B          320 FSCSVMHEALH  330 (344)
T ss_dssp             EEEEEECTTST
T ss_pred             EEEEEEcCCCC
Confidence            99999997643

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=8.9e-28  Score=226.27  Aligned_cols=265  Identities=12%  Similarity=0.071  Sum_probs=167.4

Q ss_pred             cCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852        209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAG  288 (579)
Q Consensus       209 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g  288 (579)
                      ..+|.+...+. ..+.+|++++|.|.+.+. .+.+.|+|+|..+.... ........|.|.+++.+|+|.|+|.|.+..+
T Consensus        22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~   98 (316)
T 3vh8_G           22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF-HGRIFQESFNMSPVTTAHAGNYTCRGSHPHS   98 (316)
T ss_dssp             --CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH-HHCCBSSCEEECSCCGGGCEEEEEEEBCSSS
T ss_pred             CCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee-cCCcceEEEEECCCCcccCeEEEEEEEcCCC
Confidence            35777776666 457799999999999877 67999999997654321 1122345799999999999999999986322


Q ss_pred             -----eeEEEEEEEEEecc-ceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCC
Q psy16852        289 -----EARTSGSVTITVAE-AETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDG  362 (579)
Q Consensus       289 -----~~~~~~~~~v~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  362 (579)
                           .....+.+.|.... .+.+.....    . .........+.|.+. .+.+.+.|++++..+..............
T Consensus        99 ~~~~~~~s~~~~l~V~~~~~~p~~~~~~~----~-~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~  172 (316)
T 3vh8_G           99 PTGWSAPSNPVVIMVTGNHRKPSLLAHPG----P-LVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVS  172 (316)
T ss_dssp             SSSBCCCCCCEEEEEECSSCCCEEEEESC----S-EEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEE
T ss_pred             CcceecCCCcEEEEEecCCCCCeEEecCC----C-ccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCc
Confidence                 12233444443222 111211110    0 011122233457774 45678999999987754332222222334


Q ss_pred             eEEEEEcccCCCCCEEEEEEEEcCcee-----EEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC
Q psy16852        363 LCKLAISEVFPENAGLYSCTAVNPVGE-----AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP  437 (579)
Q Consensus       363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~  437 (579)
                      ...|.|.++..+|+|.|+|.|.|..|.     ......|.|....   .+|.+...+. ..+.+|+.++|.|.+. .|.+
T Consensus       173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~---~~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~~  247 (316)
T 3vh8_G          173 KANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY---EKPSLSAQPG-PKVQAGESVTLSCSSR-SSYD  247 (316)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS---CCCEEEEESC-SCCCTTSCCEEEEEES-SCCS
T ss_pred             eEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC---CCCeEEeCCC-CeecCCCcEEEEEECC-CCCc
Confidence            458999999999999999999998774     1445566666422   3566655443 3678999999999997 5788


Q ss_pred             eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEE
Q psy16852        438 SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       438 ~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                      .+.|+|+|..+........                                  .......+.|.|.+++  |+|.|+|.|
T Consensus       248 ~~~W~k~g~~~~~~~~~~~----------------------------------~~~~~~~~~L~i~~v~--D~G~Y~C~a  291 (316)
T 3vh8_G          248 MYHLSREGGAHERRLPAVR----------------------------------KVNRTFQADFPLGPAT--HGGTYRCFG  291 (316)
T ss_dssp             EEEEEETTSSCCEEEECEE----------------------------------CTTSCEEEEEECC-------CEEEEEE
T ss_pred             EEEEEECCCcCCCceecee----------------------------------ccCCceeEEEEcCCcC--CCEEEEEEe
Confidence            9999999876532110000                                  0001123569999999  999999999


Q ss_pred             EeCCee
Q psy16852        518 ENVAGS  523 (579)
Q Consensus       518 ~n~~g~  523 (579)
                      .|..+.
T Consensus       292 ~n~~~~  297 (316)
T 3vh8_G          292 SFRHSP  297 (316)
T ss_dssp             EBTTBT
T ss_pred             ecCCCc
Confidence            998764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.95  E-value=1.5e-25  Score=195.49  Aligned_cols=191  Identities=28%  Similarity=0.426  Sum_probs=157.0

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITT-VESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+... .++.... ..+...|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            5899999999999999999999999999998999999999998754 4555443 3456799999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852         83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE  162 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  162 (579)
                      |..|.....+.+.|...+.... +.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+...  ...
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~~-~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--~~~  159 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKIHL-PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT--RSF  159 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEECC-SSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC--SSE
T ss_pred             ECCCceeEEEEEEEcCCCcCCC-CccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc--CCc
Confidence            9999888888888876554322 2223333456788999999999999999999999999998876665555433  346


Q ss_pred             EEEEECc-CCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        163 CVLSISE-ATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       163 ~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      ..|.|.+ +..+|+|.|+|.|.|..|.......+.|.
T Consensus       160 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            7899999 99999999999999999987777666653

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.95  E-value=2.3e-25  Score=194.34  Aligned_cols=190  Identities=24%  Similarity=0.430  Sum_probs=159.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      ..||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|++++..+....++.....+...+|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            35789999999999999999999999999999999999999999888888888777788999999999999999999999


Q ss_pred             CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeE
Q psy16852         84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC  163 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  163 (579)
                      ..|.......+.|...+.....   ........+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+...  ....
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~--~~~~  159 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATPQFHPG---YPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENT--EHYT  159 (197)
T ss_dssp             SSCEEEEEEEEEEEEEEEECTT---SCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEC--SSEE
T ss_pred             CCCceeEEEEEEEEcCCCCCCC---ccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEc--CCEE
Confidence            9888888888888765432111   1123445678899999999999999999999999999877666555433  3447


Q ss_pred             EEEECcCCC-CCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        164 VLSISEATP-QDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       164 ~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      .|.|.++.. +|+|.|+|.|.|..|.......+.|.
T Consensus       160 ~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          160 HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             EEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            899999995 89999999999999988777776654

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.95  E-value=2.2e-26  Score=200.71  Aligned_cols=185  Identities=21%  Similarity=0.323  Sum_probs=141.5

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC--CEEEEEEcCCCCCCCEEEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE--SVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ++|.|...+ ++.+.+|+.+.|.|.+.+ .|.+.|+|++||+.+..+.++.+....  +..+|.|.+++.+|+|.|+|.|
T Consensus         2 ~~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a   80 (207)
T 3rbs_A            2 IDPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL   80 (207)
T ss_dssp             ----CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEE
T ss_pred             CCCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEE
Confidence            678777755 688999999999999964 688999999999999888777776654  5678999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEeccc---------------CCCCCceecCCCceEEccCCcEEEEEEEEee-cCCeEEEEECCEE
Q psy16852         82 TNIGGVATCSANLIVLEKEE---------------SGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGKEE  145 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~  145 (579)
                      .|  |.......+.+.....               ...+|.+.... ...+.+|+.+.|.|.+.|. |.+.|+|+|++..
T Consensus        81 ~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~  157 (207)
T 3rbs_A           81 QD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDERE  157 (207)
T ss_dssp             EE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEE
T ss_pred             EC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEE
Confidence            99  4444434433221100               00245555444 4678899999999999998 8999999999999


Q ss_pred             ccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852        146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL  197 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v  197 (579)
                      +..+.+.    ....+..+|.|.++..+|+|.|+|.|.|..|....+..+..
T Consensus       158 l~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          158 ISVDEKH----DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             ECCCCCC----CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CCCCCce----EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            8765432    22345568999999999999999999999998888776653

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.94  E-value=1.6e-25  Score=197.58  Aligned_cols=195  Identities=25%  Similarity=0.382  Sum_probs=153.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe-CCEEEEEEcCC-CCCCCEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV-ESVSTLEIINP-TKEDIGVYTCKA   81 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~~-~~~d~G~Y~C~~   81 (579)
                      ..||.|...|.++.+.+|+.+.|.|.+.|.|.+.+.|+++|..+........... .....|.|.++ +.+|+|.|+|.+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            4689999999999999999999999999999999999999999876543333322 34678999999 599999999999


Q ss_pred             EcCCeeeEEEEEEEEEecccC-CCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCC-CceEEEcCC
Q psy16852         82 TNIGGVATCSANLIVLEKEES-GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPT  159 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~  159 (579)
                      .|..|.....+.|.|...+.. ...|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.... ...+.....
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~  163 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS  163 (212)
T ss_dssp             EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEE
T ss_pred             EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEec
Confidence            999998888888888765422 233566666677788899999999999999999999999999886542 222322222


Q ss_pred             CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-EEEEEe
Q psy16852        160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLR  198 (579)
Q Consensus       160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~v~  198 (579)
                      .....|.|.++..+|+|.|+|.|.|..|....+ +.+.+.
T Consensus       164 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            446789999999999999999999999976543 444443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.94  E-value=2.8e-25  Score=195.96  Aligned_cols=190  Identities=24%  Similarity=0.399  Sum_probs=155.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEec-CCCCEEEEEe-CCEEEEEEcCCCC-CCCEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH-ATEHYLITTV-ESVSTLEIINPTK-EDIGVYTCK   80 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~-~~~~~~~~~~-~~~~~L~i~~~~~-~d~G~Y~C~   80 (579)
                      ..||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+. ...++..... .+...|.|.+++. +|+|.|+|.
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            368999999999999999999999999999999999999999987 4556665544 4458999999999 999999999


Q ss_pred             EEcCCee-eEEEEEEEEEecccCC-CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcC
Q psy16852         81 ATNIGGV-ATCSANLIVLEKEESG-EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP  158 (579)
Q Consensus        81 ~~~~~g~-~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  158 (579)
                      +.|..|. ....+.|.|...+..+ ..|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..........+ 
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-  162 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-  162 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEET-
T ss_pred             EEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccC-
Confidence            9998887 6777888887654221 235666667778888999999999999999999999999998876433222221 


Q ss_pred             CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-EEEEEe
Q psy16852        159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLR  198 (579)
Q Consensus       159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~v~  198 (579)
                          +.|.|.++..+|+|.|+|.|.|..|..... +.+.|.
T Consensus       163 ----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~  199 (212)
T 2yd1_A          163 ----GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK  199 (212)
T ss_dssp             ----TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ----CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEE
Confidence                279999999999999999999999987654 566665

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.94  E-value=7.3e-25  Score=190.62  Aligned_cols=177  Identities=19%  Similarity=0.319  Sum_probs=144.7

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCC--CEEEEEeCC-------EEEEEEcCCCCCCCE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATE--HYLITTVES-------VSTLEIINPTKEDIG   75 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~-------~~~L~i~~~~~~d~G   75 (579)
                      ||.|+..|.++.+.+|++++|.|.+. +.|.+.+.|+++|..+....  ++++.....       ...|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            68999999999999999999999998 88888999999999987663  333333332       578999999999999


Q ss_pred             EEEEEEEcCCeeeEEE-EEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC-eEEEEECCEEccCCCCce
Q psy16852         76 VYTCKATNIGGVATCS-ANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHT  153 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~  153 (579)
                      .|+|.+.+..+..... +.+.|..      +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...... 
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-  154 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEG------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-  154 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECC------SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-
T ss_pred             EEEEEEEeCCCceecccEEEEEec------CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-
Confidence            9999999988765443 7777753      4566666677888999999999999999999 99999999887655432 


Q ss_pred             EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeE-EEEEEEE
Q psy16852        154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAE-CRANLVL  197 (579)
Q Consensus       154 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v  197 (579)
                            .....|.|.++.  |+|.|+|.|.|..|... ....+.|
T Consensus       155 ------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 ------GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             ------SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ------CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence                  234689999987  89999999999998765 4555554

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.94  E-value=1.8e-25  Score=211.07  Aligned_cols=263  Identities=16%  Similarity=0.238  Sum_probs=159.3

Q ss_pred             CeEEEEEEEEcc-C-CCeEEEEECCEEeccCce----EEeCC----eEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852        227 STVTLEAEYTGT-P-TPEVKWFKNGKEIVSKDI----ETKDN----VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV  296 (579)
Q Consensus       227 ~~~~l~C~~~~~-p-~~~v~W~~~~~~i~~~~~----~~~~~----~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~  296 (579)
                      +.+.|.|.+.+. | .+.+.|+++|..+.....    ....+    .+.|.|.....+|+|.|+|+|.|..+.....+.+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            699999999985 4 359999999998875431    11111    2467788887889999999999988765433221


Q ss_pred             EEE-eccceeeeeeeeeeccccCceeeeecCeeEEEeee-CCC---eEEEEECC-EEccCCCeEEEEECCC----CeEEE
Q psy16852        297 TIT-VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK-PTP---LVTWSHDG-TPMKEGKEVTIYQDTD----GLCKL  366 (579)
Q Consensus       297 ~v~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-p~~---~i~W~~~~-~~~~~~~~~~~~~~~~----~~~~l  366 (579)
                      .+. ....+.+.+.-.   ............+.|.+.|. |.+   .+.|++++ ..+........ ...+    ..+.|
T Consensus       105 ~~~~~~~~p~v~~~~p---~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~-~~~~g~~~~~~~L  180 (323)
T 2wqr_A          105 CADSNPRGVSAYLSRP---SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE-KQRNGTLTVTSTL  180 (323)
T ss_dssp             CCCSSGGGCEEEECCC---CHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE-ECTTSCEEEEEEE
T ss_pred             CCCCCCCCCEEEEcCC---CHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc-cCCCCCEEEEEEE
Confidence            000 001111111100   00001112233456888886 455   89999975 44433222211 1111    23479


Q ss_pred             EEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEee-CCC-eEEEeeC
Q psy16852        367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRG  444 (579)
Q Consensus       367 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~  444 (579)
                      .|.++..+|+|.|+|.|.|..+...  ..+.|........+|.+...+.......|+.++|.|.+.|. |++ .|.|+++
T Consensus       181 ~I~~~~~~D~G~Y~C~a~n~~~~~~--~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~  258 (323)
T 2wqr_A          181 PVGTRDWIEGETYQCRVTHPHLPRA--LMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHN  258 (323)
T ss_dssp             ECCHHHHHTTCCEEEEEECTTSSSC--EEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EECHHHccCCCCEEEEEECCCCCCC--eeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEEC
Confidence            9999999999999999999864332  23333221112235665432222222239999999999985 443 8999999


Q ss_pred             CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      |..+.... +..             ........|.|..              .+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       259 g~~l~~~~-~~~-------------~~~~~~~~g~~~~--------------~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          259 EVQLPDAR-HST-------------TQPRKTKGSGFFV--------------FSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             TEECCGGG-EEE-------------CCCEECSSSSEEE--------------EEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CEECCCCc-eee-------------cCcccCCCCcEEE--------------EEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            99885431 111             0111112233322              345999999999999999999999876

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.93  E-value=2.5e-24  Score=186.30  Aligned_cols=180  Identities=22%  Similarity=0.318  Sum_probs=144.3

Q ss_pred             CCccccccCceeeeC-CCCEEEEEEEEeeCC--CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQ-EQPALFTCKVEGHPL--PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~-G~~~~l~C~~~~~~~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      ||.|.. +....+.+ |+.++|.|.+.+.+.  +.+.|+++|..+.......     ....|.|.+++.+|+|.|+|.+.
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~   76 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYH   76 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEE
Confidence            687766 45566666 999999999998876  7899999999987654321     45899999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEE--CCEEccCC-CCceEEEcCC
Q psy16852         83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR--GKEEILPD-NGHTMEFNPT  159 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~--~~~~~~~~-~~~~~~~~~~  159 (579)
                      |. +.....+.+.|..      +|.+...+....+.+|+.+.|.|.+.++|.+.+.|++  ++..+... ....+.....
T Consensus        77 n~-~~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~  149 (190)
T 2wv3_A           77 FV-SAPKANATIEVKA------APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK  149 (190)
T ss_dssp             ET-TEEEEEEEEEEEC------CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEEC
T ss_pred             eC-CcccccEEEEEec------CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecC
Confidence            98 8778888888874      4566666677788999999999999999999999999  67665421 2222333333


Q ss_pred             CCeEEEEECcCC-CCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        160 TGECVLSISEAT-PQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       160 ~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      .+...|.|.++. .+|+|.|+|.|.|..|....+..+.|.
T Consensus       150 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            455689999999 799999999999999988877777664

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.93  E-value=2.7e-24  Score=187.00  Aligned_cols=186  Identities=31%  Similarity=0.548  Sum_probs=149.9

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..............+...|.|.+++.+|+|.|+|.+.+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN   84 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEc
Confidence            45666677788899999999999999999999999999988776542222222235668999999999999999999999


Q ss_pred             CCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEeC
Q psy16852        185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKD  261 (579)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~~  261 (579)
                      ..+.......+.+..        ...+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....   .....
T Consensus        85 ~~~~~~~~~~l~v~~--------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~  156 (194)
T 2a38_A           85 GSGQATSTAELLVKA--------ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG  156 (194)
T ss_dssp             TTEEEEEEEEEEEEC--------CCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEET
T ss_pred             CCceEeEEEEEEEcc--------CCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcC
Confidence            988777666666642        1235566666667789999999999999999999999999999987654   22334


Q ss_pred             CeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       262 ~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                      ....|.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus       157 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          157 DLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             TEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            5568999999999999999999999998887777665

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=189.93  Aligned_cols=180  Identities=18%  Similarity=0.287  Sum_probs=136.0

Q ss_pred             EEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECC-CCeEEEEEcccCC
Q psy16852        295 SVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDT-DGLCKLAISEVFP  373 (579)
Q Consensus       295 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~  373 (579)
                      .+.+.+.++..+.+.|...                  .+.|.|.++|+++|.++..+.++.+..+. .+...|.|.++..
T Consensus         9 ~~~~~v~eg~~v~l~c~~~------------------~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~   70 (207)
T 3rbs_A            9 ELAVEILEKGQVRFWMQAE------------------KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD   70 (207)
T ss_dssp             EEEEEECGGGCEEEEEECS------------------CCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCG
T ss_pred             CCceEEEeCCeEEEEEEEe------------------cCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCCh
Confidence            4456677888888777532                  34688999999999999887776665544 4667899999999


Q ss_pred             CCCEEEEEEEEcCceeEEEEEEEEEEeccc---------------CCCCCeeecCCCceeeecCCCeEEEEEEEee-CCC
Q psy16852        374 ENAGLYSCTAVNPVGEAVAAATLAVEEKEE---------------SGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP  437 (579)
Q Consensus       374 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~---------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~  437 (579)
                      +|+|.|+|.|.|  |.......+.+.....               ...+|.+..++ ...+.+|+.+.|.|.+.|. |.|
T Consensus        71 ~D~G~Y~C~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p  147 (207)
T 3rbs_A           71 EDEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKET  147 (207)
T ss_dssp             GGCEEEEEEEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTC
T ss_pred             hhCEEEEEEEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCC
Confidence            999999999999  4343334332211000               01267776655 4678899999999999998 999


Q ss_pred             eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEE
Q psy16852        438 SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       438 ~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                      +++|+|+|..+..+.++..                                     ......|.|.++..+|+|.|+|.|
T Consensus       148 ~i~W~k~g~~l~~~~~~~~-------------------------------------~~~~~~L~I~~v~~~D~G~Y~C~a  190 (207)
T 3rbs_A          148 HIVWYKDEREISVDEKHDF-------------------------------------KDGICTLLITEFSKKDAGIYEVIL  190 (207)
T ss_dssp             EEEEEETTEEECCCCCCCC-------------------------------------SSEEEEEEETTCCGGGCEEEEEEE
T ss_pred             EEEEEECCEECCCCCceEc-------------------------------------CCCEEEEEECCCCcccCEEEEEEE
Confidence            9999999999876543211                                     112345899999999999999999


Q ss_pred             EeCCeeEEEEEEEEE
Q psy16852        518 ENVAGSVTCTATLSL  532 (579)
Q Consensus       518 ~n~~g~~~~~~~l~v  532 (579)
                      .|..|....++.|.+
T Consensus       191 ~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          191 KDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EETTEEEEEEEEECC
T ss_pred             EcCCCEEEEEEEEec
Confidence            999999999999875

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.93  E-value=4.5e-24  Score=185.00  Aligned_cols=183  Identities=16%  Similarity=0.248  Sum_probs=146.7

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEE-CCEEec-CCCCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQK-DGTELH-ATEHYLITT-VESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~-~g~~~~-~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      |+.|...|.++.+.+|+.++|.|.+.+.+ .+.+.|++ +|..+. ...++.... ......|.|.+++.+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            67888999999999999999999998876 77999999 888886 344554433 356789999999999999999999


Q ss_pred             EcCC-eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852         82 TNIG-GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT  160 (579)
Q Consensus        82 ~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  160 (579)
                      .+.. +.....+.+.|..      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+..... 
T Consensus        82 ~~~~~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~-  154 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQ------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-  154 (191)
T ss_dssp             EETTTEEEEEEEEEEEEC------CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-
T ss_pred             EcCCCcceEEEEEEEeec------CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecC-
Confidence            9987 5566667777753      4566666677788999999999999999999999999999887544444443322 


Q ss_pred             CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852        161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL  197 (579)
Q Consensus       161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v  197 (579)
                        ..|.|.++..+|+|.|+|.|.|..+.......+.+
T Consensus       155 --~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          155 --NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             --SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             --CeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence              26999999999999999999998865554444443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.93  E-value=1e-23  Score=183.81  Aligned_cols=190  Identities=27%  Similarity=0.415  Sum_probs=149.1

Q ss_pred             CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE
Q psy16852        104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV  183 (579)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  183 (579)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............++...|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            46778777888999999999999999999999999999999887654332222334566799999999999999999999


Q ss_pred             cCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eEEe
Q psy16852        184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETK  260 (579)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~~~  260 (579)
                      |..|.......+.+......      ..|.....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....   ....
T Consensus        83 n~~g~~~~~~~l~V~~~p~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  156 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKI------HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT  156 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEE------CCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC
T ss_pred             ECCCceeEEEEEEEcCCCcC------CCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc
Confidence            99888777777766532211      11222222344567889999999999999999999999999887544   2233


Q ss_pred             CCeEEEEEcc-cCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        261 DNVTKLVIKQ-TTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       261 ~~~~~l~i~~-~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      .....|.|.+ +..+|+|.|+|.|.|..|....++.|.|.
T Consensus       157 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             SSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            4667899999 99999999999999999998777776653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=3.6e-24  Score=183.96  Aligned_cols=174  Identities=25%  Similarity=0.437  Sum_probs=138.5

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCC--EEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES--VSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +|.|...|.++.+.+|++++|.|.+.+.|.+.+.|+++|..+.............  ...|.|.+++.+|+|.|+|.+.+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            6889999999999999999999999998888999999999988765555544443  47899999999999999999998


Q ss_pred             CCee-eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC-eEEEEECCEEccCCCCceEEEcCCCC
Q psy16852         84 IGGV-ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTG  161 (579)
Q Consensus        84 ~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~  161 (579)
                      ..+. ....+.+.|..      +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.....         .
T Consensus        82 ~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~---------~  146 (182)
T 1rhf_A           82 GGETEISQPVWLTVEG------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------S  146 (182)
T ss_dssp             CTTCEECCCEEEEEEC------SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------S
T ss_pred             CCCcEEEEEEEEEEec------CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---------C
Confidence            7664 34567777764      4566666777889999999999999999998 9999999988754321         3


Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCCceeEE-EEEEE
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTFGRAEC-RANLV  196 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~~  196 (579)
                      ...|.|.++  +|+|.|+|.|.|..|.... ...+.
T Consensus       147 ~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~  180 (182)
T 1rhf_A          147 PSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVH  180 (182)
T ss_dssp             SEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ceEEEEecc--ccCeEEEEEEECCCCCcccceEEEE
Confidence            467999988  5899999999999887643 44443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.93  E-value=7.4e-25  Score=189.75  Aligned_cols=171  Identities=15%  Similarity=0.063  Sum_probs=129.5

Q ss_pred             ceeeeCCCCEEEEEE---EEeeCCCeeEEEECCEEec-----------------CCCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852         15 PVVSHQEQPALFTCK---VEGHPLPTMTWQKDGTELH-----------------ATEHYLITTVESVSTLEIINPTKEDI   74 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~---~~~~~~~~v~W~~~g~~~~-----------------~~~~~~~~~~~~~~~L~i~~~~~~d~   74 (579)
                      ++.+..|+.++|+|.   +.+.|.+.|+|+|+|..+.                 ....+......+...|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            578999999999996   4577888999999874221                 12345555667788999999999999


Q ss_pred             EEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCC--CCc
Q psy16852         75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD--NGH  152 (579)
Q Consensus        75 G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~  152 (579)
                      |.|+|.|.|..|.....+.|.|..      ||.+...+....+.+|+.+.|.|.+.|.|.|.|+|+++++.+...  ...
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~  155 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVK------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANG  155 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEE------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecC------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccc
Confidence            999999999999998888888864      334555555667789999999999999999999999887654321  222


Q ss_pred             eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852        153 TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC  191 (579)
Q Consensus       153 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (579)
                      ++.....+....|.+.+++.+|+|.|+|.|.|..|.+..
T Consensus       156 r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          156 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             eEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            333333344456777899999999999999999997653

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.92  E-value=1.1e-23  Score=185.69  Aligned_cols=190  Identities=22%  Similarity=0.367  Sum_probs=149.3

Q ss_pred             CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCC-CCceEEEcCCCCeEEEEECcCCC-CCCeEEEEE
Q psy16852        104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATP-QDEAVYSVK  181 (579)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~  181 (579)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+..+. ...++...|.|.++.. +|+|.|+|.
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVL-EQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEE-EETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEE-EcCCCeEEEEEEecCCCCcCceEEEE
Confidence            4778888888899999999999999999999999999999988733 333332 2234568999999999 999999999


Q ss_pred             EEcCCce-eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--eE
Q psy16852        182 AVNTFGR-AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IE  258 (579)
Q Consensus       182 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~~  258 (579)
                      +.|..|. ......+.|.....    .....|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ..
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~~----~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~  159 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGDK----TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS  159 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTTC----SCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEE
T ss_pred             EEeCCCCeEEeeEEEEEecccC----CCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEE
Confidence            9999887 55566666653211    01123667666677778899999999999999999999999999987543  22


Q ss_pred             EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE-EEEEEEe
Q psy16852        259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS-GSVTITV  300 (579)
Q Consensus       259 ~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~-~~~~v~~  300 (579)
                      ...  ..|.|.++..+|+|.|+|.|.|..|..... +.|.|..
T Consensus       160 ~~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          160 LKD--GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             EET--TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ccC--CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            222  379999999999999999999999987654 6666653

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.92  E-value=2.1e-24  Score=187.28  Aligned_cols=181  Identities=28%  Similarity=0.429  Sum_probs=144.6

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      .||.|...|.++.+.+|++++|.|.+.+.|.+.+.|+++|..+.. ..++...  .....|.|.+++.+|+|.|+|.+.+
T Consensus         6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (192)
T 2iep_A            6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR--ENGQLLTILSVEDSDDGIYCCTANN   83 (192)
T ss_dssp             EEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEE--GGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEc--CCccEEEEcCCCcccCeEEEEEEEc
Confidence            468899999999999999999999999999999999999998865 3444433  2335799999999999999999999


Q ss_pred             CCee-eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852         84 IGGV-ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE  162 (579)
Q Consensus        84 ~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  162 (579)
                      ..|. ......+.|...      |.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+....  .   .
T Consensus        84 ~~~~~~~~~~~l~v~~~------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~--~---~  152 (192)
T 2iep_A           84 GVGGAVESCGALQVKMK------PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL--E---S  152 (192)
T ss_dssp             SSSCCEEEEEEEEEEEE------EEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEEC--T---T
T ss_pred             CCCceeEeEEEEEEEeC------CccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEe--c---C
Confidence            8776 445566777643      34555566778889999999999999999999999999988765543332  1   1


Q ss_pred             EEEEECcCCCCCCeEEEEEEEcCCceeEE-EEEEEEe
Q psy16852        163 CVLSISEATPQDEAVYSVKAVNTFGRAEC-RANLVLR  198 (579)
Q Consensus       163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~~v~  198 (579)
                      ..|.|.++..+|+|.|+|.+.|..|.... ...+.|.
T Consensus       153 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          153 GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             SCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence            26999999999999999999999887633 3455443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.92  E-value=4.5e-25  Score=210.16  Aligned_cols=266  Identities=14%  Similarity=0.171  Sum_probs=167.7

Q ss_pred             CCceEEccCCcEEEEEEEEeec--CCeEEEEEC--CEEcc-----------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRG--KEEIL-----------------PDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +..+.+.+|+.++|.|.+.+.+  .+.|.||++  +..+.                 ...+..+..+...+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            3456788999999999998763  579999986  22210                 12334444444456789999999


Q ss_pred             CCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-CeEEEEEC
Q psy16852        171 TPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-PEVKWFKN  248 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~  248 (579)
                      +.+|+|.|+|.+.+..+.......+.|...       ...+|.+........+.+|+.++|.|.+.|. |. +.+.|+++
T Consensus        87 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~  159 (344)
T 1za6_B           87 RSEDTAVYFCTRSLNMAYWGQGTLVTVSSA-------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG  159 (344)
T ss_dssp             CGGGCEEEEEEETTTTCEECCCEEEEECSS-------CCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTT
T ss_pred             CcccCEEEEEEEecCcceecCcEEEEEecC-------CCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecC
Confidence            999999999999986543333345555321       1134444433323346789999999999986 65 69999999


Q ss_pred             CEEeccC---ceE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE----------------------
Q psy16852        249 GKEIVSK---DIE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT----------------------  299 (579)
Q Consensus       249 ~~~i~~~---~~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~----------------------  299 (579)
                      +..+...   ...    .....+.|.|.++..+| |.|+|.|.|..+.......+.+.                      
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~  238 (344)
T 1za6_B          160 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGG  238 (344)
T ss_dssp             TBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------
T ss_pred             CccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCC
Confidence            8753210   000    01123478999888878 99999999988765433333211                      


Q ss_pred             eccceeeeeeeeeeccccCceeeeecCeeEEEeeeCC--CeEEEEECCEEccCCCeEEEEECCCCe----EEEEEcccCC
Q psy16852        300 VAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPT--PLVTWSHDGTPMKEGKEVTIYQDTDGL----CKLAISEVFP  373 (579)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~  373 (579)
                      ....+.+.+...    ....+......+.|.+.|.++  +.++|+++|..+............+++    +.|.|.....
T Consensus       239 ~~~~P~v~~~~~----~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~  314 (344)
T 1za6_B          239 QPREPQVYTLPP----SRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW  314 (344)
T ss_dssp             CCBCCEEEEECC----CGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHH
T ss_pred             CCcCCEEEEeCC----ChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHc
Confidence            111222222111    111111222455799999643  589999999987654332233334443    3566777666


Q ss_pred             CCCEEEEEEEEcCcee
Q psy16852        374 ENAGLYSCTAVNPVGE  389 (579)
Q Consensus       374 ~d~G~Y~C~a~n~~g~  389 (579)
                      +|.|.|+|.|.|....
T Consensus       315 ~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          315 QQGNVFSCSVMHEALH  330 (344)
T ss_dssp             HTTCEEEEEEECTTST
T ss_pred             cCCCeEEEEEEcCCCC
Confidence            7899999999997653

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=185.71  Aligned_cols=191  Identities=19%  Similarity=0.251  Sum_probs=146.4

Q ss_pred             EEeccceeeeeeeeeeccccCceeeeecCeeEEEeee-CCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCC
Q psy16852        298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK-PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENA  376 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  376 (579)
                      +.+..|..+.+.|..+.          ..+.|.+.+. |.+.+.|+++|..+....++.+...+ +...|.|.++..+|+
T Consensus         3 v~~~~g~~v~l~c~~~~----------~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~-~~~~L~i~~v~~~D~   71 (212)
T 2r15_A            3 SIALSATDLKIQSTAEG----------IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQINEPTPNDK   71 (212)
T ss_dssp             ---CCBCCCEEEECSSE----------EEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEET-TEEEEEEESCCGGGC
T ss_pred             ccceecCcEEEEEcCce----------EEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeC-CEEEEEECCCCcccC
Confidence            34566777888885332          1234777775 58899999999999887777655443 456899999999999


Q ss_pred             EEEEEEEEcCceeEEEEEEEEEEe---------------cccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEE
Q psy16852        377 GLYSCTAVNPVGEAVAAATLAVEE---------------KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICW  441 (579)
Q Consensus       377 G~Y~C~a~n~~g~~~~~~~l~v~~---------------~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W  441 (579)
                      |.|+|.|.|..|....++.|.|..               ......++.+...+....+.+|+.++|.|.+.|.|.|.+.|
T Consensus        72 G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W  151 (212)
T 2r15_A           72 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW  151 (212)
T ss_dssp             EEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEE
T ss_pred             EEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEE
Confidence            999999999988877777665542               01111244444455667899999999999999999999999


Q ss_pred             eeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852        442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      ++++..+..+.++.+..                                  .++..+.|.|.++..+|+|.|+|.|.|..
T Consensus       152 ~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~  197 (212)
T 2r15_A          152 LKNEKALAQTDHCNLKF----------------------------------EAGRTAYFTINGVSTADSGKYGLVVKNKY  197 (212)
T ss_dssp             EETTEEECCCSSEEEEE----------------------------------ETTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             EECCeECccCCCEEEEE----------------------------------cCCCEEEEEEcCcchHHCeEEEEEEEcCC
Confidence            99999997766655432                                  11344669999999999999999999999


Q ss_pred             eeEEEEEEEEEe
Q psy16852        522 GSVTCTATLSLL  533 (579)
Q Consensus       522 g~~~~~~~l~v~  533 (579)
                      |....++.|.|.
T Consensus       198 g~~~~~~~l~V~  209 (212)
T 2r15_A          198 GSETSDFTVSVF  209 (212)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            999999999875

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.92  E-value=4.5e-24  Score=184.73  Aligned_cols=182  Identities=23%  Similarity=0.372  Sum_probs=136.7

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      +|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|++++..+......+.... ....|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML-ANNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEEC-TTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEe-cCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            68899999999999999999999999888889999999988764322222222 23469999999999999999999876


Q ss_pred             eeeE--EEEEEEEEecccCCCCCceecCCC--ceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852         86 GVAT--CSANLIVLEKEESGEAPKFTKPLK--PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG  161 (579)
Q Consensus        86 g~~~--~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  161 (579)
                      +...  ....+.+..++      .+.....  ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.........  .  .
T Consensus        81 ~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~--~--~  150 (189)
T 2v5t_A           81 RGEIDFRDIIVIVNVPP------AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--G--S  150 (189)
T ss_dssp             TTEEEEEEEEEEEEEEE------EEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEE--T--T
T ss_pred             CCceEEEEEEEEecCCC------CcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEe--c--C
Confidence            4332  34555555432      3332222  356778999999999999999999999999988766544332  1  2


Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      ...|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus       151 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            3479999999999999999999999988877777664

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.92  E-value=9.2e-25  Score=189.14  Aligned_cols=175  Identities=18%  Similarity=0.146  Sum_probs=124.8

Q ss_pred             EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccC-----------------CCeEEEEECC
Q psy16852        298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE-----------------GKEVTIYQDT  360 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~-----------------~~~~~~~~~~  360 (579)
                      |++..|+.+.|.|....                +.+.|.+.|+|+|+|..+..                 ...+.. ...
T Consensus         3 Vta~~Ge~v~L~C~~~~----------------v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   65 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRR----------------VSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI-HRS   65 (203)
T ss_dssp             CEEETTCCEEEEEECSS----------------TTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEE-EEE
T ss_pred             eEEEcCCCEEEEeeeec----------------cCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEE-EEc
Confidence            45667888888885321                24567777888776543211                 111222 123


Q ss_pred             CCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEE
Q psy16852        361 DGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC  440 (579)
Q Consensus       361 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~  440 (579)
                      .+...|.|.++..+|+|.|+|.|.|..|.....+.|.|..      ||.+...+....+.+|+.++|.|.+.|.|.|+|.
T Consensus        66 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~  139 (203)
T 4fa8_A           66 ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQ  139 (203)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEE
T ss_pred             CCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecC------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEE
Confidence            4567899999999999999999999999999999999975      6777777777889999999999999999999999


Q ss_pred             EeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        441 WYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       441 W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      |++++..+......                               +.+..+..++....|.|.++..+|+|.|+|.|.|.
T Consensus       140 W~~~~~~~~~~~~~-------------------------------~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~  188 (203)
T 4fa8_A          140 WLMPEGVEPAPTAA-------------------------------NGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKND  188 (203)
T ss_dssp             ECCC-------------------------------------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESS
T ss_pred             EEECCeeecCcccc-------------------------------cceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            99877654321100                               00112223455566888899999999999999999


Q ss_pred             CeeEEE
Q psy16852        521 AGSVTC  526 (579)
Q Consensus       521 ~g~~~~  526 (579)
                      .|++..
T Consensus       189 ~G~a~~  194 (203)
T 4fa8_A          189 KEEAHG  194 (203)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            999875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.92  E-value=9.9e-24  Score=186.26  Aligned_cols=180  Identities=14%  Similarity=0.219  Sum_probs=143.1

Q ss_pred             eeCCCCEEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEE
Q psy16852         18 SHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        18 v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      ..+|+.+.|.|.+.+. |.+.+.|+++|..+....++.....+....|.|.+++.+|+|.|+|.+.|..|.....+.+.|
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v   93 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG   93 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEE
Confidence            3467777777777664 577999999999999888888888888889999999999999999999998887776666654


Q ss_pred             Eec---------------ccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852         97 LEK---------------EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG  161 (579)
Q Consensus        97 ~~~---------------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  161 (579)
                      ...               .....++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+.... .+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-~~  172 (212)
T 2r15_A           94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA-GR  172 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEET-TT
T ss_pred             eeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcC-CC
Confidence            320               00012223333456678899999999999999999999999999998877665555432 44


Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      ...|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus       173 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          173 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            5799999999999999999999999988777766654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.92  E-value=5e-24  Score=188.21  Aligned_cols=186  Identities=25%  Similarity=0.407  Sum_probs=142.0

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCC----EEEEEeCCE---EEEEEcCCCCCCCE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH----YLITTVESV---STLEIINPTKEDIG   75 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~----~~~~~~~~~---~~L~i~~~~~~d~G   75 (579)
                      +..||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+.....    .......+.   ..|.|.+++.+|+|
T Consensus         6 ~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   85 (212)
T 2v9r_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (212)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred             ccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence            45689999999999999999999999999999999999999998864321    111111111   12445677999999


Q ss_pred             EEEEEEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCce
Q psy16852         76 VYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHT  153 (579)
Q Consensus        76 ~Y~C~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~  153 (579)
                      .|+|.+.|..|.. .....+.|...     ++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.......
T Consensus        86 ~Y~C~~~n~~g~~~~~~~~l~V~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~  160 (212)
T 2v9r_A           86 VYVCVARNYLGEAVSHDASLEVAIL-----RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI  160 (212)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECEE-----CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTE
T ss_pred             EEEEEEECCCCceeecceEEEEEec-----cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceE
Confidence            9999999988765 34566777543     2344445566788899999999998 889999999999999887654333


Q ss_pred             EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE-EEEEEe
Q psy16852        154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR-ANLVLR  198 (579)
Q Consensus       154 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~v~  198 (579)
                      ....     ..|.|.++..+|+|.|+|.+.|..|..... ..+.|.
T Consensus       161 ~~~~-----~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~  201 (212)
T 2v9r_A          161 TIRG-----GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL  201 (212)
T ss_dssp             EEET-----TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EccC-----CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE
Confidence            2221     379999999999999999999998876543 555554

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.91  E-value=1.9e-22  Score=177.74  Aligned_cols=191  Identities=26%  Similarity=0.426  Sum_probs=146.0

Q ss_pred             CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcC-CCCCCeEEEEEE
Q psy16852        104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA-TPQDEAVYSVKA  182 (579)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~  182 (579)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......... .......|.|.++ ..+|+|.|+|.+
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEF-DDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEE-GGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEE-cCCCceEEEEeccCCCCCCeEEEEEE
Confidence            35667777788889999999999999999999999999999887543333222 2234578999999 499999999999


Q ss_pred             EcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc------
Q psy16852        183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD------  256 (579)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~------  256 (579)
                      .|..|.......+.+......    ....|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....      
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~----~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~  159 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLREDQI----PRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK  159 (212)
T ss_dssp             EETTEEEEEEEEEEEECGGGC----CTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEE
T ss_pred             EcCCCcEEEEEEEEEeccCcc----CCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEE
Confidence            999988777777776532210    0123566666666778899999999999999999999999999887542      


Q ss_pred             eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEE-EEEEEEE
Q psy16852        257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART-SGSVTIT  299 (579)
Q Consensus       257 ~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~-~~~~~v~  299 (579)
                      .........|.|.++..+|+|.|+|.|.|..|.... .+.+.|.
T Consensus       160 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             EEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            122245689999999999999999999999998654 3444444

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.91  E-value=1.3e-23  Score=188.38  Aligned_cols=193  Identities=22%  Similarity=0.302  Sum_probs=148.9

Q ss_pred             CCCCcccccc----CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEE-EEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852          4 VLAPRFIEKI----QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL-ITTVESVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         4 ~~~p~~~~~p----~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~   78 (579)
                      ..+|.|...+    ....+.+|++++|.|.+.+.|.+.+.|+++|..+.....+. .........|.|.+++.+|+|.|+
T Consensus        13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (231)
T 3ojm_B           13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT   92 (231)
T ss_dssp             CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred             ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence            3477887776    78999999999999999999999999999999986543321 122333468999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEeecCCeEEEEE----CCEEccCCCCce
Q psy16852         79 CKATNIGGVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYR----GKEEILPDNGHT  153 (579)
Q Consensus        79 C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~  153 (579)
                      |.+.|..|.......+.|...+.  .++.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++    ++..+..+....
T Consensus        93 C~~~n~~~~~~~~~~l~V~~~~~--~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~  170 (231)
T 3ojm_B           93 CVVENEYGSINHTYHLDVVERSR--HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPY  170 (231)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCC--CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBC
T ss_pred             EEEecccCcccccEEEEEEcCCC--CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcce
Confidence            99999999888888888876432  2233332 3466788899999999999999999999999    776665443322


Q ss_pred             EEEc-----CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        154 MEFN-----PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       154 ~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      ....     .......|.|.++..+|+|.|+|.+.|..|.......+.|.
T Consensus       171 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  220 (231)
T 3ojm_B          171 LKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL  220 (231)
T ss_dssp             EEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEe
Confidence            2111     11223579999999999999999999999988777777765

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.91  E-value=5.6e-24  Score=188.56  Aligned_cols=187  Identities=26%  Similarity=0.372  Sum_probs=142.5

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC--CEEEEEeCCE--EEEEEcCCCCCCCEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESV--STLEIINPTKEDIGVYT   78 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~~--~~L~i~~~~~~d~G~Y~   78 (579)
                      ...||.|...|.++.+.+|++++|.|.+.+.|.+.+.|+++|..+....  ..+.....+.  ..|.|.+++.+|+|.|+
T Consensus         6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred             ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence            4678999999999999999999999999998889999999999886542  2222222222  22368899999999999


Q ss_pred             EEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCc----
Q psy16852         79 CKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGH----  152 (579)
Q Consensus        79 C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~----  152 (579)
                      |.+.|..|... ....+.|...     ++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......    
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~  160 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAVL-----RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA  160 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECEE-----CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---C
T ss_pred             EEEecCCCccccccceEEEEEe-----CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCccccccccc
Confidence            99999888653 3556666543     3344455567788999999999998 89999999999999988743211    


Q ss_pred             --eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852        153 --TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL  197 (579)
Q Consensus       153 --~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v  197 (579)
                        .....   ....|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus       161 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv  204 (217)
T 2vr9_A          161 SSRVRIV---DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI  204 (217)
T ss_dssp             CCSEEEE---TTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCcEEec---CCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence              11111   1237999999999999999999999998766544433

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.9e-23  Score=188.49  Aligned_cols=192  Identities=22%  Similarity=0.318  Sum_probs=147.2

Q ss_pred             CCCccccc----cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852          5 LAPRFIEK----IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHY-LITTVESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus         5 ~~p~~~~~----p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      .+|.|..+    +..+.+.+|++++|.|.+.+.|.+.+.|+++|..+...... ..........|.|.+++.+|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            36777655    34689999999999999999988999999999988654322 11233344689999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEEecccCCCCCc-eecCCCceEEccCCcEEEEEEEEeecCCeEEEEE----CCEEccCCCCceE
Q psy16852         80 KATNIGGVATCSANLIVLEKEESGEAPK-FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR----GKEEILPDNGHTM  154 (579)
Q Consensus        80 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~~  154 (579)
                      .+.+..+.......+.|...+.  .++. ....+....+.+|+.+.|.|.+.+.|.+.+.|++    ++..+........
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~--~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~  167 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYV  167 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCC--CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCE
T ss_pred             EEeecCCceEEEEEEEEeccCC--CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceee
Confidence            9999999888888888876432  1223 2334566778899999999999999999999999    7776655443322


Q ss_pred             EE------cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        155 EF------NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       155 ~~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      ..      ........|.|.++..+|+|.|+|.+.|..|.......+.|.
T Consensus       168 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  217 (241)
T 3grw_A          168 TVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH  217 (241)
T ss_dssp             EEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-
T ss_pred             eeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEec
Confidence            11      112235689999999999999999999999988777777665

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.91  E-value=3.5e-22  Score=172.74  Aligned_cols=175  Identities=21%  Similarity=0.299  Sum_probs=140.1

Q ss_pred             CCceecCCCceEEcc-CCcEEEEEEEEeecC--CeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEE
Q psy16852        105 APKFTKPLKPVIAEA-QSPATLKATVTGRPT--PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  181 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~-g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  181 (579)
                      +|.+.. +....+.+ |+.+.|.|.+.+.|.  +.+.|++++..+.......       ....|.|.+++.+|+|.|+|.
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~   74 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-------SNMEYRINKPRAEDSGEYHCV   74 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-------SEEEEEESSCCGGGCEEEEEE
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-------ccEEEEEecCCcccCEEEEEE
Confidence            445554 34455556 999999999998887  8999999999886543322       357899999999999999999


Q ss_pred             EEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEE--CCEEeccC----
Q psy16852        182 AVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK--NGKEIVSK----  255 (579)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~i~~~----  255 (579)
                      +.+. +.......+.+.           .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++  ++..+...    
T Consensus        75 ~~n~-~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~  142 (190)
T 2wv3_A           75 YHFV-SAPKANATIEVK-----------AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG  142 (190)
T ss_dssp             EEET-TEEEEEEEEEEE-----------CCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTS
T ss_pred             EEeC-CcccccEEEEEe-----------cCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCC
Confidence            9998 776666666665           56777767777778999999999999999999999999  88877422    


Q ss_pred             c--eEEeCCeEEEEEcccC-CCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        256 D--IETKDNVTKLVIKQTT-KKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       256 ~--~~~~~~~~~l~i~~~~-~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      .  .........|.|.++. .+|+|.|+|.|.|..|....+..+.|.
T Consensus       143 ~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             CEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            1  2223445689999999 799999999999999998888887775

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.91  E-value=1.4e-22  Score=176.07  Aligned_cols=179  Identities=13%  Similarity=0.228  Sum_probs=141.9

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEE-eecCCeEEEEECCEEccCCCCceEEEcCCCC-------eEEEEECcCCCCCCe
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTG-------ECVLSISEATPQDEA  176 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G  176 (579)
                      +|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+...............       ...|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            45777788889999999999999998 8899999999999988766332222222221       478999999999999


Q ss_pred             EEEEEEEcCCceeEEE-EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC-eEEEEECCEEecc
Q psy16852        177 VYSVKAVNTFGRAECR-ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVS  254 (579)
Q Consensus       177 ~Y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~i~~  254 (579)
                      .|+|.+.+..+..... ..+.+.           .+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+..
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~  150 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLE-----------GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLAT  150 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC-----------CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSS
T ss_pred             EEEEEEEeCCCceecccEEEEEe-----------cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccC
Confidence            9999999987654332 445443           56777777777789999999999999999999 9999999988865


Q ss_pred             CceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE-EEEEEEE
Q psy16852        255 KDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR-TSGSVTI  298 (579)
Q Consensus       255 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~-~~~~~~v  298 (579)
                      ....  .....|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       151 ~~~~--~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          151 APGH--GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             STTS--SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCc--CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            4321  456789999987  78999999999999775 5666655

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.91  E-value=2.7e-22  Score=174.76  Aligned_cols=182  Identities=29%  Similarity=0.497  Sum_probs=145.9

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      +|.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+..+  .....|.|.+++.+|+|.|+|.+.+
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD--GRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEES--SSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeC--CCEEEEEEecCCccCCEEEEEEEEC
Confidence            45666777788899999999999999999999999999999877666555443  4557899999999999999999999


Q ss_pred             CCceeEEEEEEEEeeccccCCCCccCCCeEec---cCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc---eE
Q psy16852        185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVR---PLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IE  258 (579)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~---~~  258 (579)
                      ..+.......+.+...           |.+..   ......+..|+.+.|.|.+.+.|.+.+.|++++..+....   ..
T Consensus        85 ~~~~~~~~~~l~v~~~-----------p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~  153 (197)
T 3lcy_A           85 EVGEVETSSKLLLQAT-----------PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIE  153 (197)
T ss_dssp             SSCEEEEEEEEEEEEE-----------EEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEE
T ss_pred             CCCceeEEEEEEEEcC-----------CCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEE
Confidence            9888777777666532           22211   1234457789999999999999999999999999987654   22


Q ss_pred             EeCCeEEEEEcccCC-CCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        259 TKDNVTKLVIKQTTK-KTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       259 ~~~~~~~l~i~~~~~-~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      .......|.|.++.. +|+|.|+|.|.|..|....++.+.|.
T Consensus       154 ~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          154 NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             ECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            334457899999985 89999999999999988777777664

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.91  E-value=5.2e-23  Score=182.08  Aligned_cols=174  Identities=16%  Similarity=0.243  Sum_probs=140.3

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      -.++|...|.++.+.+|+.++|.|.+.+.|.+.+.|++++..+....         ...|.|.+++.+|+|.|+|.+.+.
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~   87 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNN   87 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC---------SSEEEETTCCGGGCEEEEEEEECT
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC---------CCEEEEccCChhhCeEeEEEEEcC
Confidence            46789999999999999999999999988888999999999886543         257999999999999999999998


Q ss_pred             Ceee-EEEEEEEEEecccC---------CCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceE
Q psy16852         85 GGVA-TCSANLIVLEKEES---------GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM  154 (579)
Q Consensus        85 ~g~~-~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~  154 (579)
                      .|.. ...+.+.|...+..         ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....   
T Consensus        88 ~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~---  164 (218)
T 3k0w_A           88 FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---  164 (218)
T ss_dssp             TCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS---
T ss_pred             CCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC---
Confidence            7754 44577777654311         1224566667778899999999999999999999999999998765432   


Q ss_pred             EEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee-EEEEEEEEe
Q psy16852        155 EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA-ECRANLVLR  198 (579)
Q Consensus       155 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~~v~  198 (579)
                              ..|.|.+++.+|+|.|+|.+.|..|.. .....+.|.
T Consensus       165 --------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          165 --------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             --------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             --------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence                    369999999999999999999988763 334444443

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.5e-22  Score=175.11  Aligned_cols=184  Identities=21%  Similarity=0.360  Sum_probs=137.3

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      +|.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+.....   ..|.|.+++.+|+|.|+|.+.+
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~   78 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN---NNLQILNINKSDEGIYRCEGRV   78 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTT---SCEEETTCCGGGCEEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecC---CCEEEeeCCHhHCcEEEEEEEE
Confidence            4566667778889999999999999988999999999998876544444443322   3599999999999999999998


Q ss_pred             CCceeEEEEEEEEeeccccCCCCccCCCeEeccCC--ceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc-eEEeC
Q psy16852        185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQ--ALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-IETKD  261 (579)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~-~~~~~  261 (579)
                      ..+.......+.+..         ..+|.+.....  ...+.+|+.+.|.|.+.+.|.+.+.|+++|..+.... .....
T Consensus        79 ~~~~~~~~~~~~l~v---------~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~  149 (189)
T 2v5t_A           79 EARGEIDFRDIIVIV---------NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG  149 (189)
T ss_dssp             TTTTEEEEEEEEEEE---------EEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET
T ss_pred             cCCCceEEEEEEEEe---------cCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec
Confidence            875443333333321         12344433332  3457789999999999999999999999999987654 33444


Q ss_pred             CeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852        262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV  300 (579)
Q Consensus       262 ~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~  300 (579)
                      ....|.|.++..+|+|.|+|.|.|..|....+..+.|.+
T Consensus       150 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          150 SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            556899999999999999999999999988888877753

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.90  E-value=1.5e-22  Score=175.31  Aligned_cols=182  Identities=13%  Similarity=0.183  Sum_probs=138.9

Q ss_pred             CceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEE-CCEEccCCC-CceEEEcCCCCeEEEEECcCCCCCCeEEEEEE
Q psy16852        106 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYR-GKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVKA  182 (579)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~-~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  182 (579)
                      +.+...+....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+.... +..+. ....+...|.|.+++.+|+|.|+|.+
T Consensus         3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV-WNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEE-EEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEE-ECCCCceEEEEccCCcccCEEEEEEE
Confidence            3455566778889999999999998876 78999999 777766433 32222 22245678999999999999999999


Q ss_pred             EcCCc-eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--eEE
Q psy16852        183 VNTFG-RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IET  259 (579)
Q Consensus       183 ~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~~~  259 (579)
                      .+..+ .......+.+.           .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ...
T Consensus        82 ~~~~~~~~~~~~~l~v~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~  150 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIF-----------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI  150 (191)
T ss_dssp             EETTTEEEEEEEEEEEE-----------CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEE
T ss_pred             EcCCCcceEEEEEEEee-----------cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEE
Confidence            99874 33344444443           56777777777788999999999999999999999999999886432  112


Q ss_pred             eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      ......|.|.++..+|+|.|+|.|.|..+.......+.|.
T Consensus       151 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~  190 (191)
T 1epf_A          151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI  190 (191)
T ss_dssp             ECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             EecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence            2223479999999999999999999988766555555553

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=1.7e-22  Score=173.55  Aligned_cols=176  Identities=16%  Similarity=0.250  Sum_probs=138.8

Q ss_pred             CceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852        106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  185 (579)
                      |.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+..........|.|.+++.+|+|.|+|.+.+.
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   82 (182)
T 1rhf_A            3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG   82 (182)
T ss_dssp             ----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSC
T ss_pred             CEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcC
Confidence            35556667788999999999999999899999999999988776555555444333578999999999999999999998


Q ss_pred             Ccee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC-eEEEEECCEEeccCceEEeCCe
Q psy16852        186 FGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDNV  263 (579)
Q Consensus       186 ~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~~  263 (579)
                      .+.. .....+.+.           .+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+....    ...
T Consensus        83 ~~~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~----~~~  147 (182)
T 1rhf_A           83 GETEISQPVWLTVE-----------GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA----PSP  147 (182)
T ss_dssp             TTCEECCCEEEEEE-----------CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE----ESS
T ss_pred             CCcEEEEEEEEEEe-----------cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC----CCc
Confidence            6643 234455544           56777777777789999999999999999999 999999999886543    156


Q ss_pred             EEEEEcccCCCCCeEEEEEEEcCCeeeEE-EEEEEE
Q psy16852        264 TKLVIKQTTKKTTGKYEIRVVNEAGEART-SGSVTI  298 (579)
Q Consensus       264 ~~l~i~~~~~~d~G~y~C~a~n~~g~~~~-~~~~~v  298 (579)
                      ..|.|.++  +|+|.|+|.|.|..|.... .+.|.|
T Consensus       148 ~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          148 SVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            78999988  5899999999999997653 555554

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=183.35  Aligned_cols=189  Identities=20%  Similarity=0.255  Sum_probs=140.5

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEE-EEeeCC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCK-VEGHPL-PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~-~~~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ++|+.+...+.++.+.+|+.++|.|. +.+.|. +.+.|++++..+................|.|.+++.+|+|.|+|.+
T Consensus         6 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   85 (201)
T 3s97_C            6 YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFV   85 (201)
T ss_dssp             EECCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEE
T ss_pred             cCCccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEE
Confidence            45666666778899999999999999 888888 8999999998775332222333444577999999999999999999


Q ss_pred             EcCCeeeEE---EEEEEEEecc-cCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEc
Q psy16852         82 TNIGGVATC---SANLIVLEKE-ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFN  157 (579)
Q Consensus        82 ~~~~g~~~~---~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  157 (579)
                      .+..+....   ...+.+.... ....+|.+........+.+|+.+.|.|.+.+.|.+.+.|++++..+...  ..+.  
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~--~~~~--  161 (201)
T 3s97_C           86 SSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST--AEIS--  161 (201)
T ss_dssp             EEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTT--CEEE--
T ss_pred             EecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCc--eeec--
Confidence            986654433   2333332211 1112344544455778899999999999999999999999999876543  1221  


Q ss_pred             CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       158 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      .  ....|.|.++..+|+|.|+|.+.|..|....+..+.|.
T Consensus       162 ~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          162 T--SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             T--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             C--CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            1  12479999999999999999999999988777777653

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.90  E-value=1.1e-22  Score=176.37  Aligned_cols=181  Identities=25%  Similarity=0.365  Sum_probs=140.9

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      +|.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+...... +.....  ...|.|.+++.+|+|.|+|.+.+
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~   83 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR-YSIREN--GQLLTILSVEDSDDGIYCCTANN   83 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTT-EEEEGG--GTEEEESSCCGGGCEEEEEEEEC
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCcc-EEEcCC--ccEEEEcCCCcccCeEEEEEEEc
Confidence            456666777788999999999999999999999999999987653322 222211  23699999999999999999999


Q ss_pred             CCcee-EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCe
Q psy16852        185 TFGRA-ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNV  263 (579)
Q Consensus       185 ~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~  263 (579)
                      ..+.. .....+.+.           .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...........
T Consensus        84 ~~~~~~~~~~~l~v~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~  152 (192)
T 2iep_A           84 GVGGAVESCGALQVK-----------MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES  152 (192)
T ss_dssp             SSSCCEEEEEEEEEE-----------EEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTT
T ss_pred             CCCceeEeEEEEEEE-----------eCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecC
Confidence            87763 344455544           345555566667788999999999999999999999999998876653333334


Q ss_pred             EEEEEcccCCCCCeEEEEEEEcCCeeeE-EEEEEEEE
Q psy16852        264 TKLVIKQTTKKTTGKYEIRVVNEAGEAR-TSGSVTIT  299 (579)
Q Consensus       264 ~~l~i~~~~~~d~G~y~C~a~n~~g~~~-~~~~~~v~  299 (579)
                      ..|.|.++..+|+|.|+|.|.|..|... ..+.+.|.
T Consensus       153 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          153 GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             SCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence            5799999999999999999999998764 34555554

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=8.4e-23  Score=180.31  Aligned_cols=180  Identities=19%  Similarity=0.299  Sum_probs=134.5

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe------------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL------------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      |+.|...|.++.+.+|+.++|.|.+.+.|.+.+.|++++..+            ....++...  .  ..|.|.+++.+|
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~--~~L~i~~v~~~D   76 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS--S--SGITFSSVTRKD   76 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE--T--TEEEESCCCGGG
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee--c--eeEEEcccCccc
Confidence            456778899999999999999999998888899999987653            122333322  2  689999999999


Q ss_pred             CEEEEEEEEcCCe--eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEE-EEeecCCeEEEEECCE-EccCC
Q psy16852         74 IGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKAT-VTGRPTPSICWYRGKE-EILPD  149 (579)
Q Consensus        74 ~G~Y~C~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~i~W~~~~~-~~~~~  149 (579)
                      +|.|+|.+.+..|  .....+.+.|..++      .+.....+..+.+|+.+.|.|. +.+.|.+.+.|++++. .+...
T Consensus        77 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~  150 (212)
T 1f97_A           77 NGEYTCMVSEEGGQNYGEVSIHLTVLVPP------SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD  150 (212)
T ss_dssp             CEEEEEEEEETTSSSEEEEEEEEEEEBCC------CCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC--
T ss_pred             CeEEEEEEEccCCCcccEEEEEEEEEcCC------CCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccc
Confidence            9999999999866  45566777776542      2222223456789999999999 6889999999999998 76643


Q ss_pred             CC-------ceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852        150 NG-------HTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL  197 (579)
Q Consensus       150 ~~-------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v  197 (579)
                      ..       ..+....  ....|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus       151 ~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l  203 (212)
T 1f97_A          151 AKKTRAFMNSSFTIDP--KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM  203 (212)
T ss_dssp             ---CBSCSSSCEEECT--TTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEE
T ss_pred             ccccccccCceeEecC--CCceEEEEecChhhCcEEEEEEccccCCccccceEEE
Confidence            32       1222222  2357999999999999999999999998744433333

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.89  E-value=7.3e-23  Score=177.88  Aligned_cols=176  Identities=11%  Similarity=0.087  Sum_probs=129.4

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .+-+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+.... ...........|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (196)
T 3p2t_A            2 PLPKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-QNPLEPKNKARFSIPSMTEDYAGRYRCYYR   78 (196)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-ECCCSSSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-cccccCCceEEEEeccCCcccCceEEEEEe
Confidence            4568889888888 8999999999999987 667999999998775321 000111346889999999999999999999


Q ss_pred             cCCee--eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852         83 NIGGV--ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT  160 (579)
Q Consensus        83 ~~~g~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  160 (579)
                      |..|.  .+..+.+.|....   .+|.+...+.. .+.+|+.++|.|.+.+. ++.+.|++++..+........ .....
T Consensus        79 n~~g~~~~s~~~~l~V~~~~---~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~-~~~~~  152 (196)
T 3p2t_A           79 SPVGWSQPSDPLELVMTGAY---SKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSE-HGAQQ  152 (196)
T ss_dssp             ETTEEBCCCCCEEEEEECSS---CCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEE-EEEEE
T ss_pred             CCCcccCCCccEEEEecCCC---CCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccc-ccccC
Confidence            98873  3445667775432   23444443333 67899999999999874 468999999886643322111 11112


Q ss_pred             CeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        161 GECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      ....|.|.+++.+|+|.|+|.|.|..+
T Consensus       153 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          153 HQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             cceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            346799999999999999999999866

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.89  E-value=3e-23  Score=180.23  Aligned_cols=176  Identities=11%  Similarity=0.063  Sum_probs=118.6

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +-+|.|...|.. .+.+|++++|.|.+.+.+. .+.|||+|..+..... ..........|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            3 LSKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             CCBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            567889888875 7999999999999987665 9999999987643210 001123568899999999999999999998


Q ss_pred             CCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852         84 IGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG  161 (579)
Q Consensus        84 ~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  161 (579)
                      ..|..  +..+.|.|....   .+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|++..+...............
T Consensus        80 ~~g~~~~s~~~~l~V~~~~---~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~  154 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTGFY---NKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQF  154 (196)
T ss_dssp             TTEECBCCCCEEEEEECSS---CCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCE
T ss_pred             CCCcCCcCccEEEEecCCC---CCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCc
Confidence            87643  344667776532   134444333 34678999999999998888 899999998876432111111111123


Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      ...|.|.+++.+|+|.|+|.|.|..+
T Consensus       155 ~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          155 QALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             eeEEEeeecCcccCeeEEEEEEccCC
Confidence            46899999999999999999998765

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.89  E-value=1.2e-22  Score=172.95  Aligned_cols=158  Identities=13%  Similarity=0.124  Sum_probs=124.4

Q ss_pred             CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCe-eEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      ..+.+|.|...|....+.+|++++|.|.+.+.+.+. +.|+++|..+...          ...|.|.+++.+|+|.|+|.
T Consensus         3 ~~~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~----------~~~L~i~~~~~~d~G~Y~C~   72 (175)
T 1fnl_A            3 EDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQ   72 (175)
T ss_dssp             CCCCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEE
T ss_pred             CCCCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC----------ceEEEEeCCCcccCEEEEEE
Confidence            356788899999999999999999999998887665 8999999988643          35899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC-CeEEEEECCEEccCCCCceEEEcCC
Q psy16852         81 ATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYRGKEEILPDNGHTMEFNPT  159 (579)
Q Consensus        81 ~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~  159 (579)
                      +.|..+  +..+.+.|...      +..... ....+.+|+.+.|.|.+.+.++ +.+.|++++..+...      .   
T Consensus        73 ~~n~~~--s~~~~l~V~~~------~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~------~---  134 (175)
T 1fnl_A           73 TNLSTL--SDPVQLEVHIG------WLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------H---  134 (175)
T ss_dssp             CSSSCC--CCCEEEEEECS------SEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------E---
T ss_pred             eeCCcc--cccEEEEEeCC------CceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC------C---
Confidence            987544  34456666522      222222 3356789999999999987666 499999999876321      0   


Q ss_pred             CCeEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        160 TGECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                       ....|.|.+++.+|+|.|+|.|.|..+.
T Consensus       135 -~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  162 (175)
T 1fnl_A          135 -HNSDFHIPKATLKDSGSYFCRGLVGSKN  162 (175)
T ss_dssp             -ECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             -CCCEEEEcccChhhCeEEEEEEEcCCCC
Confidence             1246999999999999999999997554

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.88  E-value=9.9e-22  Score=177.18  Aligned_cols=174  Identities=21%  Similarity=0.339  Sum_probs=128.0

Q ss_pred             EEEeeeCCCeEEEEECCEEccCCCeEE--EEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCC
Q psy16852        329 VVVTGKPTPLVTWSHDGTPMKEGKEVT--IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGE  406 (579)
Q Consensus       329 ~~~~g~p~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~  406 (579)
                      |.+.|.|.+.+.|++++..+.......  ....  ....|.|.++..+|+|.|+|.+.|..|.....+.|.|.....  .
T Consensus        37 C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~--~  112 (241)
T 3grw_A           37 CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH--QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP--H  112 (241)
T ss_dssp             CCEECSSCCEEEEEETTEECCGGGSTTCCEEEG--GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC--C
T ss_pred             EEecCCCCceeEEEECCcccCCCCcccceeeec--cceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCC--C
Confidence            335677888999999999886543221  1122  223799999999999999999999999888888888876422  2


Q ss_pred             CCee-ecCCCceeeecCCCeEEEEEEEeeCCCeEEEee----CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEE
Q psy16852        407 APKF-TKPLKPVIAEAQSPATLKATVTGRPTPSICWYR----GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYS  481 (579)
Q Consensus       407 ~p~~-~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~----~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  481 (579)
                      +|.+ ...+....+..|+.++|.|.+.|.|.+.+.|++    ++..+..+.......        ...            
T Consensus       113 ~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~--------~~~------------  172 (241)
T 3grw_A          113 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV--------LKS------------  172 (241)
T ss_dssp             CCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEE--------EEE------------
T ss_pred             CceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeee--------eeE------------
Confidence            3333 334566778899999999999999999999999    777775544322211        000            


Q ss_pred             EEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        482 VKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       482 c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                             .........+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       173 -------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  217 (241)
T 3grw_A          173 -------WISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH  217 (241)
T ss_dssp             -------EECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-
T ss_pred             -------eeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEec
Confidence                   000111234669999999999999999999999999999999875

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.88  E-value=1.8e-22  Score=175.85  Aligned_cols=166  Identities=12%  Similarity=0.110  Sum_probs=126.3

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCe-eEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-MTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +-+|.+...|.+..+.+|++++|.|.+.+.+.+. +.|+++|..+....          ..|.|.+++.+|+|.|+|.+.
T Consensus         5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~   74 (204)
T 3sgj_C            5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQ   74 (204)
T ss_dssp             -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEET
T ss_pred             CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeC
Confidence            4567888889989999999999999998887665 99999999886553          679999999999999999998


Q ss_pred             cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852         83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHTMEFNPTTG  161 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  161 (579)
                      |.  ..+..+.+.|...      +.+...+ ...+.+|+.++|.|.+.+. |.+.+.|++++..+....          .
T Consensus        75 n~--~~s~~~~l~V~~~------p~~~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~----------~  135 (204)
T 3sgj_C           75 LS--TLSDPVQLEVHIG------WLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH----------H  135 (204)
T ss_dssp             TS--BCCCCEEEEEECS------SEEEECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE----------E
T ss_pred             CC--cccccEEEEEecC------ceEecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc----------C
Confidence            74  3444567777643      2333333 2567789999999999655 558999999998753211          1


Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCCc-eeEEEEEEEEe
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTFG-RAECRANLVLR  198 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~~v~  198 (579)
                      ...|.|.++..+|+|.|+|.+.|..+ .......+.|.
T Consensus       136 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (204)
T 3sgj_C          136 NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT  173 (204)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEe
Confidence            23699999999999999999999543 33334445444

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.88  E-value=4.2e-22  Score=175.78  Aligned_cols=181  Identities=17%  Similarity=0.190  Sum_probs=132.2

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEe------------cCCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTEL------------HATEHYLITTVESVSTLEIINPTKE   72 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~   72 (579)
                      |.+..+| .+.+.+|++++|.|.+.+.+.+.+.|||.  +...            ....++.........+|.|.+++.+
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG   80 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence            5667777 99999999999999999888889999992  2211            0234666666777889999999999


Q ss_pred             CCEEEEEEEEcCCe---eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEcc
Q psy16852         73 DIGVYTCKATNIGG---VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEIL  147 (579)
Q Consensus        73 d~G~Y~C~~~~~~g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~  147 (579)
                      |+|.|+|.+.+..+   .....+.+.|...+  ..+|.+...+....+.+|+.++|.|.+.+. |+ +.|.|++++..+.
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  158 (213)
T 3mj8_L           81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQP--NAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPIT  158 (213)
T ss_dssp             GCEEEEEEEEETTTTEEEEBCCEEEEEECSC--CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             hCEEEEEEeccCCcceeEEcCceEEEEeCCC--CCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccC
Confidence            99999999999876   34455677776432  134555544444445589999999999886 33 4999999999886


Q ss_pred             CCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852        148 PDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAEC  191 (579)
Q Consensus       148 ~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (579)
                      .......... .++    ...|.|.++..+|+|.|+|.|.|..+....
T Consensus       159 ~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  205 (213)
T 3mj8_L          159 QGVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEK  205 (213)
T ss_dssp             TTEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEE
T ss_pred             CCcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEe
Confidence            5311110000 111    246999999999999999999998765443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.88  E-value=1.5e-21  Score=174.89  Aligned_cols=175  Identities=22%  Similarity=0.383  Sum_probs=129.1

Q ss_pred             EEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCC
Q psy16852        329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAP  408 (579)
Q Consensus       329 ~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p  408 (579)
                      |.+.|.|.+.+.|++++..+.............+...|.|.++..+|+|.|+|.+.|..|.......|.|...+.  .+|
T Consensus        41 C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~--~~p  118 (231)
T 3ojm_B           41 CPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR--HRP  118 (231)
T ss_dssp             CCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC--CCC
T ss_pred             EecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCC--CCC
Confidence            446778889999999999886554321111111223799999999999999999999999888888888876432  234


Q ss_pred             eeec-CCCceeeecCCCeEEEEEEEeeCCCeEEEee----CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        409 KFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYR----GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       409 ~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~----~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      .+.. .+....+..|+.++|.|.+.|.|.|.+.|++    +|..+..+.......        .....            
T Consensus       119 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~--------~~~~~------------  178 (231)
T 3ojm_B          119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV--------LKHSG------------  178 (231)
T ss_dssp             EECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEE--------EEECS------------
T ss_pred             ceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeE--------ecccc------------
Confidence            4433 3456788999999999999999999999999    777665443322111        00000            


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ......+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       179 --------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  220 (231)
T 3ojm_B          179 --------INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL  220 (231)
T ss_dssp             --------TTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             --------cccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEe
Confidence                    012234569999999999999999999999999999999986

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.88  E-value=4.9e-22  Score=172.90  Aligned_cols=177  Identities=13%  Similarity=0.147  Sum_probs=122.8

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .+-+|.|...|.. .+.+|++++|.|.+.+.+. .+.|+|+|..+...... .........|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (198)
T 1ugn_A            2 HLPKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYG   78 (198)
T ss_dssp             CCCCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccc-cccCCcccEEEECCCCHHHCeEEEEEEE
Confidence            4568888888874 8999999999999987665 79999999877421100 0011123679999999999999999999


Q ss_pred             cCC-e--eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCC
Q psy16852         83 NIG-G--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT  159 (579)
Q Consensus        83 ~~~-g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  159 (579)
                      |.. |  ..+..+.|.|...+   ..|.+...+ ...+.+|+.++|.|.+.+. .+.+.|++++..+.............
T Consensus        79 n~~~g~~~~s~~~~l~V~~~~---~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~  153 (198)
T 1ugn_A           79 SDTAGRSESSDPLELVVTGAY---IKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARG  153 (198)
T ss_dssp             ETTTEECCCCCCEEEEEECSS---CCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------
T ss_pred             CCCCCcccCCccEEEEEcccc---cCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCC
Confidence            987 5  33455677776521   133443332 3567899999999999877 78999999988764332111111111


Q ss_pred             CCeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        160 TGECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      .....|.|.+++.+|+|.|+|.|.|..+
T Consensus       154 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          154 SSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cceeEEEecccCcccCeEEEEEEEeCCC
Confidence            2357899999999999999999999865

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.88  E-value=1.7e-21  Score=173.53  Aligned_cols=179  Identities=17%  Similarity=0.148  Sum_probs=121.9

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCC---eeEEEECCEE-----------ecC------CCCEEEEE---eCCEEEEEEcC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKDGTE-----------LHA------TEHYLITT---VESVSTLEIIN   68 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~g~~-----------~~~------~~~~~~~~---~~~~~~L~i~~   68 (579)
                      +++++.+.+|++++|.|.+.+.+.+   .|.|+|++..           +..      ..+.....   ..+..+|+|.+
T Consensus        10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   89 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN   89 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence            4556899999999999999866544   6999986632           211      11222211   12468999999


Q ss_pred             CCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCCeEEEEECCEEcc
Q psy16852         69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEIL  147 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~  147 (579)
                      ++.+|+|.|+|.|.|..|.....+.+.+...        .........+.+|+.+.|.|.+.+ .|.+.|+|+++++.+.
T Consensus        90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~  161 (226)
T 4f80_A           90 VTASDSGKYLCYFQDGDFYEKALVELKVAAL--------GSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI  161 (226)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBC--------CCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred             CchHHCeeEEEEEECCCcEEEEEEEEeeccc--------eecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEc
Confidence            9999999999999998887766555444321        112223456778999999999987 5889999999776655


Q ss_pred             CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        148 PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      .........+..+....+.+..++.+|+|.|+|.|.|..|....+..+.|.
T Consensus       162 ~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          162 PTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             CCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             CCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence            444333333333333344555678899999999999999988887777654

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.88  E-value=1.9e-21  Score=167.19  Aligned_cols=167  Identities=16%  Similarity=0.299  Sum_probs=127.5

Q ss_pred             eeeeCCCCEEEEEEEEeeCCC--eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEE
Q psy16852         16 VVSHQEQPALFTCKVEGHPLP--TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN   93 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~   93 (579)
                      ..+.+|+.++|.|.+.+.+.+  .+.|+++|..+......     .....|.|.  +.+|+|.|+|.+.|..   ...+.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~   77 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTAN   77 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEESTT---SCEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECCc---CcEEE
Confidence            567899999999999887776  89999999988765422     224567777  6899999999999732   24556


Q ss_pred             EEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEE---CCEE-ccCCCCceEEEcCCCCeEEEEEC
Q psy16852         94 LIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYR---GKEE-ILPDNGHTMEFNPTTGECVLSIS  168 (579)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~---~~~~-~~~~~~~~~~~~~~~~~~~l~i~  168 (579)
                      +.|..      +|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++   ++.. +......++......+...|.|.
T Consensus        78 l~V~~------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  151 (184)
T 3b5h_A           78 IQLHG------PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIE  151 (184)
T ss_dssp             EEECC------SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEEC
T ss_pred             EEEec------CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEe
Confidence            67753      45566566677889999999999999999 79999999   4444 43332233333333556789999


Q ss_pred             cCC-CCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        169 EAT-PQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       169 ~~~-~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      +++ .+|+|.|+|.|.|..|.......+.|.
T Consensus       152 ~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          152 NLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             SCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            999 899999999999999988777666653

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.88  E-value=2.5e-22  Score=182.53  Aligned_cols=205  Identities=14%  Similarity=0.146  Sum_probs=121.4

Q ss_pred             CCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-----CCeEEEEECC
Q psy16852         69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-----TPSICWYRGK  143 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~  143 (579)
                      ++.+|+|.|+|.|.   |.......+.+..      ++.+...+..+.+.+|+.++|.|.+.+.|     .+.+.||+++
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~------~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~   81 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLR------ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQR   81 (254)
T ss_dssp             ------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEEC
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheee------ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeC
Confidence            67899999999997   4333333333322      44566667788999999999999998877     4899999843


Q ss_pred             --EEc----------cCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE-EEEEEEeeccccCCCCccC
Q psy16852        144 --EEI----------LPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLE  210 (579)
Q Consensus       144 --~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~  210 (579)
                        ..+          ......++......+..+|.|.+++.+|+|.|+|.+.+..+.... ...+.+..        ...
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~--------~~~  153 (254)
T 2c1o_A           82 PGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR--------ADA  153 (254)
T ss_dssp             TTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC--------CCB
T ss_pred             CCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECC--------CCC
Confidence              211          111112232222345678999999999999999999987553221 12344421        113


Q ss_pred             CCeEeccCCceeeCCCCeEEEEEEEEc-cCC-CeEEEEECCEEeccC-ceE---------EeCCeEEEEEcccCCCCCeE
Q psy16852        211 APTIVRPLQALLVPKDSTVTLEAEYTG-TPT-PEVKWFKNGKEIVSK-DIE---------TKDNVTKLVIKQTTKKTTGK  278 (579)
Q Consensus       211 ~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~i~~~-~~~---------~~~~~~~l~i~~~~~~d~G~  278 (579)
                      +|.+...........|+.++|.|.+.+ .|+ +.+.|+++|..+... ...         .....+.|.|.++..+|+|.
T Consensus       154 ~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~  233 (254)
T 2c1o_A          154 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS  233 (254)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCe
Confidence            455554333222335789999999988 444 369999999988765 110         01124689999999999999


Q ss_pred             EEEEEEcCCeee
Q psy16852        279 YEIRVVNEAGEA  290 (579)
Q Consensus       279 y~C~a~n~~g~~  290 (579)
                      |+|.|.|.....
T Consensus       234 Y~C~a~n~~~~~  245 (254)
T 2c1o_A          234 YTCEATHKTSTS  245 (254)
T ss_dssp             EEEEEECTTCSS
T ss_pred             EEEEEEcCCCCC
Confidence            999999987654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.88  E-value=1.7e-21  Score=172.51  Aligned_cols=185  Identities=22%  Similarity=0.338  Sum_probs=137.6

Q ss_pred             CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe--EEEEECcCCCCCCeEEEEE
Q psy16852        104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE--CVLSISEATPQDEAVYSVK  181 (579)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~  181 (579)
                      .+|.+...+..+.+.+|+.+.|.|.+.+.|.+.|.|++++..+..............+.  ..|.|.+++.+|+|.|+|.
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   87 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV   87 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence            46778888888999999999999999998999999999999887653222222222222  2346889999999999999


Q ss_pred             EEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE-EccCCCeEEEEECCEEeccCc---
Q psy16852        182 AVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVSKD---  256 (579)
Q Consensus       182 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~i~~~~---  256 (579)
                      +.+..|.... ...+.+..          .+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....   
T Consensus        88 ~~n~~g~~~~~~~~l~v~~----------~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~  157 (217)
T 2vr9_A           88 AKNRVGQAVSRHASLQIAV----------LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMS  157 (217)
T ss_dssp             EEETTEEEECCCEEEEECE----------ECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC-
T ss_pred             EecCCCccccccceEEEEE----------eCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccc
Confidence            9998876532 34444432          23344444556678899999999998 789999999999999887322   


Q ss_pred             -----eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        257 -----IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       257 -----~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                           .........|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus       158 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv  204 (217)
T 2vr9_A          158 FGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI  204 (217)
T ss_dssp             --CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred             cccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence                 111122347999999999999999999999998776544443

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.87  E-value=2.8e-22  Score=170.80  Aligned_cols=156  Identities=17%  Similarity=0.180  Sum_probs=119.9

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +-+|.|...|..+.+.+|++++|.|.+.+.+.+ .+.|+++|..+...          ...|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~   71 (176)
T 1f2q_A            2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQ   71 (176)
T ss_dssp             --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECT
T ss_pred             CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcC
Confidence            457889999999999999999999999887764 69999999988643          3689999999999999999998


Q ss_pred             cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852         83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTG  161 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  161 (579)
                      +..+.  ..+.+.|..      ++.... .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....          .
T Consensus        72 ~~~~s--~~~~l~V~~------~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----------~  132 (176)
T 1f2q_A           72 QVNES--EPVYLEVFS------DWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----------E  132 (176)
T ss_dssp             TSSCC--CCEEEEEEC------SSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----------C
T ss_pred             Ccccc--ccEEEEEeC------cceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec----------C
Confidence            75543  345566652      222222 233467799999999999 456668999999998874321          2


Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      ...|.|.+++.+|+|.|+|.+.|..+.
T Consensus       133 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~  159 (176)
T 1f2q_A          133 NHNISITNATVEDSGTYYCTGKVWQLD  159 (176)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCeEEECCCCcccCEEEEEEEEeCCcc
Confidence            347999999999999999999997443

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.87  E-value=8.5e-21  Score=164.94  Aligned_cols=170  Identities=15%  Similarity=0.144  Sum_probs=121.0

Q ss_pred             cccccCce-eeeCCCCEEEEEEEEeeCCCeeEEEECC-EEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852          9 FIEKIQPV-VSHQEQPALFTCKVEGHPLPTMTWQKDG-TELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus         9 ~~~~p~~~-~v~~G~~~~l~C~~~~~~~~~v~W~~~g-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      +...|.+. .+.+|+.++|.|.+.|.|.+.+.|+++. ..+.  .  ..........|.|.+++.+|+|.|+|.|.|..|
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   78 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--G--KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR   78 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--S--EEEEETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--c--eEEEcCCccEEEECcCCHHHCEEEEEEEEECCc
Confidence            44556664 4559999999999999999999999843 2111  1  122344567899999999999999999999988


Q ss_pred             eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC---CeEEEEECCEEccCCCCceEE-E-cCCCC
Q psy16852         87 VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT---PSICWYRGKEEILPDNGHTME-F-NPTTG  161 (579)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~~~~-~-~~~~~  161 (579)
                      ..+..+.|.|...+.   .+.+..  . ..+.+|+.++|.|.+.+.++   +.|.|++++..+......... . .....
T Consensus        79 ~~~~~~~l~V~~~p~---~~~~~~--~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~  152 (202)
T 1vca_A           79 KLEKGIQVEIYSFPK---DPEIHL--S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETK  152 (202)
T ss_dssp             EEEEEEEEEEEBCCS---CCEEEE--S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEE
T ss_pred             eEeeEEEEEEEeCCC---CCEeCC--c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEE
Confidence            888888888876432   222222  1 45779999999999987644   379999999876432100000 0 00112


Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      ...|.|.....+|.|.|+|+|.|..+.
T Consensus       153 ~~~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          153 SLEVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             EEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             EEEEEEEeeeccCCCeEEEEEEccccC
Confidence            345788888889999999999998765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.87  E-value=4.5e-22  Score=189.47  Aligned_cols=182  Identities=22%  Similarity=0.219  Sum_probs=143.4

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCE-EEEEEEEc
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIG-VYTCKATN   83 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~   83 (579)
                      -+|.|...|.++.+.+|+.++|.|.+.|.|.+.+.|++++..+......  .......+|.|.+++.+|+| .|+|.|.|
T Consensus       157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n  234 (347)
T 2ifg_A          157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAEN  234 (347)
T ss_dssp             CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCEE
T ss_pred             CCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEEEc
Confidence            3788999999999999999999999999999999999998765322110  12335689999999999999 99999999


Q ss_pred             CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcC-----
Q psy16852         84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP-----  158 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-----  158 (579)
                      ..|.....+.+.|..+|      .+.    .....+|+.++|.|.+.|.|.+.|.|++++..+............     
T Consensus       235 ~~g~~~~~~~l~V~~~P------~i~----~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~  304 (347)
T 2ifg_A          235 DVGRAEVSVQVNVSFPA------SVQ----LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE  304 (347)
T ss_dssp             TTEECCEEECCCCBEEE------EEE----ECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTC
T ss_pred             CCCCEEEEEEEEEcCCC------eee----eccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCC
Confidence            99988777777775543      220    112347899999999999999999999999998755544433322     


Q ss_pred             CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        159 TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      ....+.|.|.+++.+|+|.|+|.|.|..|....+..+.|.
T Consensus       305 ~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             CCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             cccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            1235789999999999999999999999987777666543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.87  E-value=5.5e-22  Score=175.37  Aligned_cols=179  Identities=20%  Similarity=0.253  Sum_probs=128.9

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeC----CCeeEEEE----------------CCEEecC-----CCCEEEEE---eCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHP----LPTMTWQK----------------DGTELHA-----TEHYLITT---VES   60 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~----~~~v~W~~----------------~g~~~~~-----~~~~~~~~---~~~   60 (579)
                      +..++..+.+.+|++++|.|.+.+.+    .+.+.|++                ++..+..     ..+.....   ..+
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   82 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSG   82 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGT
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCC
Confidence            45567789999999999999998776    45899998                4444432     22332211   124


Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEE
Q psy16852         61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICW  139 (579)
Q Consensus        61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W  139 (579)
                      ..+|.|.+++.+|+|.|+|.+.+..|.....+.|.|...+.      +........+.+|+.+.|.|.+ .+.|.+.+.|
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~------~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W  156 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS------GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEW  156 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCB------SCEEEEESCCBTTCCEEEEEECSBCCSSCEEEE
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCC------CceeeeecceecCCcEEEEecCCCCCCCCEEEE
Confidence            57899999999999999999999999888888888876532      2221222236789999999999 8899999999


Q ss_pred             EECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852        140 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL  197 (579)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v  197 (579)
                      ++++...........  .  .....|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus       157 ~~~~~~~~~~~~~~~--~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  210 (214)
T 3jz7_A          157 QKLSDSQTMPTPWLA--E--MTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV  210 (214)
T ss_dssp             EECSTTCCCCGGGGG--G--TTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECC
T ss_pred             EECCCCCccCcccee--c--cCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence            995432211111110  1  11238999999999999999999999998876666654

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.87  E-value=9.1e-22  Score=173.66  Aligned_cols=179  Identities=12%  Similarity=0.157  Sum_probs=128.2

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      .++..|.++.+.+|++++|.|.+.+.+.+.+.|||++  ..+            ....++..........|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhh
Confidence            3566688999999999999999998888899999853  211            11256666666677899999999999


Q ss_pred             CEEEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEEECCEEccCCC
Q psy16852         74 IGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEILPDN  150 (579)
Q Consensus        74 ~G~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~~  150 (579)
                      +|.|+|.+.+..+.... .+.+.|....   .+|.+..........+|+.++|.|.+.+ .|.+ .+.|++++..+....
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  159 (213)
T 3d9a_L           83 FGMYFCQQSNSWPYTFGGGTKLEIKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV  159 (213)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECCCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred             CEEEEEeeecCCcceeCCCEEEEEecCC---CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCccee
Confidence            99999999987764332 3466665421   2444443333333447999999999987 5554 899999999876541


Q ss_pred             CceEEEc-CCCC----eEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        151 GHTMEFN-PTTG----ECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       151 ~~~~~~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      ....... ..++    .+.|.|.++..+|+|.|+|.|.|.....
T Consensus       160 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          160 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             eecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            1111111 1111    2489999999999999999999987654

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.87  E-value=5.1e-22  Score=174.77  Aligned_cols=170  Identities=11%  Similarity=0.011  Sum_probs=123.8

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEE--EEEEcCCCCCCCEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS--TLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~   81 (579)
                      +.+|.|...|. ..+.+|++|+|.|.+.+ +.+.|.|||+|..+...... ........  .|.|.+++.+|+|.|+|.+
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEEEE
Confidence            56788888887 57999999999999976 67799999998766432211 10111234  8999999999999999999


Q ss_pred             EcCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCC
Q psy16852         82 TNIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT  159 (579)
Q Consensus        82 ~~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  159 (579)
                      .|..|..  +..+.|.|.+..   .+|.+...+ ...+.+|+.++|.|...+.|.+.+.|+|++..+...    ...  .
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~~---~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~----~~~--~  153 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGLY---GKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQS--G  153 (218)
T ss_dssp             EETTTEEEECCCEEEEEECSS---CCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEE--C
T ss_pred             EcCCCceeecCCEEEEEcCcc---cCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc----ccC--C
Confidence            9976533  234666665421   234454433 346789999999997666777899999998866431    111  2


Q ss_pred             CCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        160 TGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       160 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      .....|.|.+++.+|+|.|+|.+.+..
T Consensus       154 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          154 EHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             SSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CccCEEEEccCCcccCEEEEEEEEcCC
Confidence            234689999999999999999999863

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.87  E-value=9.4e-22  Score=178.47  Aligned_cols=172  Identities=16%  Similarity=0.195  Sum_probs=124.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEe---eCCCeeEEEECCEEec------------------------------CCCCEEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEG---HPLPTMTWQKDGTELH------------------------------ATEHYLI   55 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~---~~~~~v~W~~~g~~~~------------------------------~~~~~~~   55 (579)
                      +..++.++.+.+|++++|.|.+.+   .+.+.+.|++++....                              ...+..+
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            445567899999999999999987   7778999999874320                              0111111


Q ss_pred             EEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee-----EEEEEEEEEecccCCCCCce-ecCCCceEEccCCcEEEEEEE
Q psy16852         56 TTVESVSTLEIINPTKEDIGVYTCKATNIGGVA-----TCSANLIVLEKEESGEAPKF-TKPLKPVIAEAQSPATLKATV  129 (579)
Q Consensus        56 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-----~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~  129 (579)
                      .. .+..+|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|...+.   ++.+ ...+....+.+|+.+.|.|.+
T Consensus        85 ~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~~~~~~~~~~v~~g~~v~L~C~~  160 (250)
T 2fbo_J           85 AN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP---SNNVHVSTAEVVQVDEGNDITMTCPC  160 (250)
T ss_dssp             SC-TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSC---CSCCEECCCSEEECCTTCCEEECCCE
T ss_pred             cc-CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCC---CCeEEEecCceEEecCCCcEEEEEEe
Confidence            10 123579999999999999999999876632     4567777765421   2222 234455777889999999999


Q ss_pred             EeecCCeEEEEECCEEccCCCCc----------------------eEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        130 TGRPTPSICWYRGKEEILPDNGH----------------------TMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       130 ~~~p~~~i~W~~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      .+.|.+.|.|++++..+......                      .....   +...|.|.+++.+|+|.|+|.|.|..|
T Consensus       161 ~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g  237 (250)
T 2fbo_J          161 TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS---GARNLVIRAAKITDAGRVWCELATGQG  237 (250)
T ss_dssp             ESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE---TTTEEEECSCCGGGCEEEEEEEESSSS
T ss_pred             cCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC---CccEEEEecCCcccCEEEEEEecCCcc
Confidence            99999999999998876543211                      11110   224799999999999999999999554

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.87  E-value=5.8e-22  Score=170.00  Aligned_cols=162  Identities=12%  Similarity=0.103  Sum_probs=122.0

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .+-+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|...          ......|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~----------~~~~~~L~i~~v~~~D~G~Y~C~a~   72 (184)
T 2gi7_A            5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR----------YQDQAVLFIPAMKRSLAGRYRCSYQ   72 (184)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC----------EESSSEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc----------cCcccEEEECcCChhhCceEEEEEE
Confidence            4567888888875 8999999999999977 67799999998751          1123689999999999999999999


Q ss_pred             cCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852         83 NIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT  160 (579)
Q Consensus        83 ~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  160 (579)
                      |..|..  +..+.+.|....   .+|.+...+ ...+.+|+.++|.|.+.+. ++.+.|++++..+.......      .
T Consensus        73 n~~g~~~~s~~~~l~V~~~~---~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~~~------~  141 (184)
T 2gi7_A           73 NGSLWSLPSDQLELVATGVF---AKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNPER------W  141 (184)
T ss_dssp             ETTEEBCCCCCEEEEEESSS---CCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCCCCE------E
T ss_pred             cCCCccCCCCCEEEEecCcC---CCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcceecCC------C
Confidence            987642  344666665421   234444433 3456789999999997654 46999999988765422211      1


Q ss_pred             CeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        161 GECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      ....|.|.+++.+|+|.|+|.+.|..+
T Consensus       142 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          142 YRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             ceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            235689999999999999999999754

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.86  E-value=2.2e-21  Score=170.83  Aligned_cols=180  Identities=10%  Similarity=0.047  Sum_probs=123.8

Q ss_pred             cccCceeeeCC--CCEEEEEEEEeeCCCeeEEEEC---CEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852         11 EKIQPVVSHQE--QPALFTCKVEGHPLPTMTWQKD---GTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        11 ~~p~~~~v~~G--~~~~l~C~~~~~~~~~v~W~~~---g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      ..|..+.+.+|  ++++|.|.+.+ |.+.+.|+++   |..+..+..+...   ....|.|.+++.+|+|.|+|.|.|..
T Consensus        12 ~~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~---~~~~l~I~~v~~~D~G~Y~C~a~n~~   87 (213)
T 2x1w_L           12 DQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD---SKKGFTIPSYMISYAGMVFCEAKIND   87 (213)
T ss_dssp             --CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEE---TTTEEEEEGGGTTTCSEEEEEEC---
T ss_pred             CCceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccccc---CCccEEEccCChhcCceEEEEEEECC
Confidence            45688999999  99999999976 6689999984   6666554333221   22469999999999999999998854


Q ss_pred             eeeEE-EEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEeecC--CeEEEEECCEEccCCCCceEEEcC---
Q psy16852         86 GVATC-SANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKEEILPDNGHTMEFNP---  158 (579)
Q Consensus        86 g~~~~-~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~---  158 (579)
                      +.... ...+.|...    .+|.+. .+...+.+.+|+.++|.|.+.+.|.  +.+.|++++..+............   
T Consensus        88 ~~~~s~~~~l~v~~~----~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~  163 (213)
T 2x1w_L           88 ESYQSIMYIVVVVGY----RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG  163 (213)
T ss_dssp             -CEECCCEEEEECBC----CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSS
T ss_pred             eeEEEEEEEEEEeCC----cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccC
Confidence            43332 255555321    123333 3444558899999999999998654  589999988754321100001111   


Q ss_pred             ---CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        159 ---TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       159 ---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                         ....+.|.|.+++.+|+|.|+|.|.|..|.......+.|.
T Consensus       164 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  206 (213)
T 2x1w_L          164 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH  206 (213)
T ss_dssp             CSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEe
Confidence               1123579999999999999999999999988777777765

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.86  E-value=1.8e-21  Score=171.66  Aligned_cols=180  Identities=18%  Similarity=0.264  Sum_probs=129.7

Q ss_pred             ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCe
Q psy16852        107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEA  176 (579)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  176 (579)
                      .+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.          .....+.....    ..|.|.+++.+|+|
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~G   78 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDNG   78 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGCE
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccCe
Confidence            34456677888999999999999988999999999765421          11111222221    57999999999999


Q ss_pred             EEEEEEEcCCc--eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEE-EEccCCCeEEEEECCE-Ee
Q psy16852        177 VYSVKAVNTFG--RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAE-YTGTPTPEVKWFKNGK-EI  252 (579)
Q Consensus       177 ~Y~C~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~-~i  252 (579)
                      .|+|.+.+..|  .......+.+.           .+|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+
T Consensus        79 ~Y~C~~~~~~g~~~~~~~~~l~V~-----------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l  147 (212)
T 1f97_A           79 EYTCMVSEEGGQNYGEVSIHLTVL-----------VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML  147 (212)
T ss_dssp             EEEEEEEETTSSSEEEEEEEEEEE-----------BCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESB
T ss_pred             EEEEEEEccCCCcccEEEEEEEEE-----------cCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccc
Confidence            99999999876  33444444443           2333322223345788999999999 7889999999999998 76


Q ss_pred             ccCc----------eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852        253 VSKD----------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA  301 (579)
Q Consensus       253 ~~~~----------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~  301 (579)
                      ....          .........|.|.++..+|+|.|+|.|.|..|....+..+.|.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          148 TADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             C-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             cccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence            6432          223344568999999999999999999999998855555555443

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.86  E-value=1.3e-22  Score=178.59  Aligned_cols=178  Identities=20%  Similarity=0.319  Sum_probs=131.6

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe----------c--CCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL----------H--ATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~----------~--~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      ++.|...|.++.+.+|+++.|.|.+.+.|.+.+.|++++..+          .  ...++.  ...  ..|.|.+++.+|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~--~~L~i~~~~~~d   79 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT--FLP--TGITFKSVTRED   79 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCE--EET--TEEECSCCCTTS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceE--eec--cEEEEeeCCHHH
Confidence            456677788899999999999999998888899999987652          1  122222  222  689999999999


Q ss_pred             CEEEEEEEEcCCe--eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCC
Q psy16852         74 IGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDN  150 (579)
Q Consensus        74 ~G~Y~C~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~  150 (579)
                      +|.|+|.+.+..|  .....+.+.|..++      .+.....+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+....
T Consensus        80 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~  153 (209)
T 1nbq_A           80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPP------SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP  153 (209)
T ss_dssp             CSEEEEEEEETTSSCEECCEEECCEEBCC------CCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCS
T ss_pred             CcEEEEEEecCCCCccceEEEEEEEecCC------cCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcc
Confidence            9999999998765  33445666666543      22222334567899999999997 889999999999998776543


Q ss_pred             CceE-----EEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852        151 GHTM-----EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA  193 (579)
Q Consensus       151 ~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  193 (579)
                      ....     ..........|.|.++..+|+|.|+|.|.|..|....+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~  201 (209)
T 1nbq_A          154 KSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN  201 (209)
T ss_dssp             SSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred             ccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccc
Confidence            2110     001111335799999999999999999999998774433

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.86  E-value=1.4e-21  Score=172.41  Aligned_cols=185  Identities=27%  Similarity=0.416  Sum_probs=134.4

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCC---ceEEEcCCCCeE--EEEECcCCCCCCeEEE
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG---HTMEFNPTTGEC--VLSISEATPQDEAVYS  179 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~  179 (579)
                      +|.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.....   ........+...  .|.|.+++.+|+|.|+
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   88 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV   88 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEE
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEE
Confidence            56677777888999999999999999999999999999988764321   112222222211  2445677999999999


Q ss_pred             EEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE-EccCCCeEEEEECCEEeccCce
Q psy16852        180 VKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVSKDI  257 (579)
Q Consensus       180 C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~i~~~~~  257 (579)
                      |.+.+..|... ....+.+..          .++.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+.....
T Consensus        89 C~~~n~~g~~~~~~~~l~V~~----------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~  158 (212)
T 2v9r_A           89 CVARNYLGEAVSHDASLEVAI----------LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDE  158 (212)
T ss_dssp             EEEEETTEEEECCCEEEEECE----------ECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTST
T ss_pred             EEEECCCCceeecceEEEEEe----------ccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcc
Confidence            99999877542 234444432          23333344455678899999999998 8899999999999999876542


Q ss_pred             EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE-EEEEEE
Q psy16852        258 ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS-GSVTIT  299 (579)
Q Consensus       258 ~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~-~~~~v~  299 (579)
                      ........|.|.++..+|+|.|+|.|.|..|..... +.|.|.
T Consensus       159 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~  201 (212)
T 2v9r_A          159 RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL  201 (212)
T ss_dssp             TEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE
Confidence            111123479999999999999999999999876543 555544

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.86  E-value=2.5e-21  Score=170.49  Aligned_cols=180  Identities=14%  Similarity=0.170  Sum_probs=128.3

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEec------------CCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTELH------------ATEHYLITTVESVSTLEIINPTKE   72 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~~~~~   72 (579)
                      |.+..+| .+.+.+|++++|.|.+.  +.+.+.|||+  +..+.            ...++.........+|+|.+++.+
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   78 (211)
T 3tv3_L            2 SALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTD   78 (211)
T ss_dssp             -CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGG
T ss_pred             ceEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChh
Confidence            4566666 89999999999999998  7779999994  22211            235666666777889999999999


Q ss_pred             CCEEEEEEEEcCCe--eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec--CCeEEEEECCEEccC
Q psy16852         73 DIGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRGKEEILP  148 (579)
Q Consensus        73 d~G~Y~C~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~  148 (579)
                      |+|.|+|.+.+..+  .....+.+.|...+  ..+|.+...+....+.+|+.++|.|.+.+.+  .+.+.|++++..+..
T Consensus        79 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  156 (211)
T 3tv3_L           79 DEAVYYCGSLVGNWDVIFGGGTKLTVLGQP--KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA  156 (211)
T ss_dssp             GCEEEEEEEEETTTEEEECCCEEEEECCSC--CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             HCEEEEEEEecCCCceeECCCceEEEeCCC--CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence            99999999999876  34445667775321  2345555444444444799999999998863  489999999998764


Q ss_pred             CCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852        149 DNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAEC  191 (579)
Q Consensus       149 ~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (579)
                      ...........++    ...|.|..+..+|+|.|+|.|.|..+....
T Consensus       157 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~  203 (211)
T 3tv3_L          157 GVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  203 (211)
T ss_dssp             TEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEE
T ss_pred             CcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEe
Confidence            2111111111111    257999999999999999999998765443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.86  E-value=3.6e-21  Score=169.30  Aligned_cols=178  Identities=14%  Similarity=0.183  Sum_probs=125.2

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      .+.. |.++.+.+|++++|.|.+.+.+.+.+.|||++  ..+            ....++..........|.|.+++.+|
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   81 (210)
T 1lk3_L            3 VLTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADD   81 (210)
T ss_dssp             CEEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHH
Confidence            3455 88999999999999999998888899999942  221            11356666656677899999999999


Q ss_pred             CEEEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCC
Q psy16852         74 IGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDN  150 (579)
Q Consensus        74 ~G~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~  150 (579)
                      +|.|+|.+.+..+.... ...+.|....   .+|.+..........+|+.++|.|.+.+. |+ ..|.|++++..+....
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  158 (210)
T 1lk3_L           82 TAIYFCQQSWNGPLTFGAGTKLELKRAD---AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGV  158 (210)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECCCC---BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTE
T ss_pred             CeEEEEEEEcCCCceeCCCEEEEEcCCC---cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCc
Confidence            99999999987654332 3466665421   23444432332234479999999999874 44 3899999999876441


Q ss_pred             CceEEE-cCCCC----eEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        151 GHTMEF-NPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       151 ~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      ...... ...++    .+.|.|.++..+|+|.|+|.|.|.....
T Consensus       159 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          159 LDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             eEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            111100 11112    2479999999999999999999986543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.86  E-value=9.8e-21  Score=165.42  Aligned_cols=186  Identities=17%  Similarity=0.164  Sum_probs=137.3

Q ss_pred             ecCCCceEEccCCcEEEEEE-EEeecC-CeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        109 TKPLKPVIAEAQSPATLKAT-VTGRPT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       109 ~~~~~~~~~~~g~~~~l~C~-~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      ...+..+.+.+|+.+.|.|. +.+.|. +.+.|++++..+.............  ...|.|.+++.+|+|.|+|.+.+..
T Consensus        12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~~~   89 (201)
T 3s97_C           12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT--NGNLYIANVEASDKGNYSCFVSSPS   89 (201)
T ss_dssp             SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTT--TCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred             cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcC--CCeEEECcCCcccCeEEEEEEEecC
Confidence            33557788999999999999 888898 9999999987765333333333222  2469999999999999999999876


Q ss_pred             ceeEEEE-EEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEE
Q psy16852        187 GRAECRA-NLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK  265 (579)
Q Consensus       187 ~~~~~~~-~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~  265 (579)
                      +...... .+.+...  ........+|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+.... ........
T Consensus        90 ~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~-~~~~~~~~  166 (201)
T 3s97_C           90 ITKSVFSKFIPLIPI--PERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA-EISTSGAV  166 (201)
T ss_dssp             GTEEEECCCEEEEEE--CCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC-EEETTTTE
T ss_pred             CCcchhhcccceeec--cccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce-eecCCCCE
Confidence            5544321 1111111  011112234555555556778899999999999999999999999998776543 33344568


Q ss_pred             EEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       266 l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      |.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus       167 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          167 LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            9999999999999999999999998887777764

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.86  E-value=8.6e-21  Score=170.77  Aligned_cols=178  Identities=16%  Similarity=0.212  Sum_probs=129.8

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeC----CCeeEEEECC--EE---ec---------CCCCEEEEEeCCEEEEEEcC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHP----LPTMTWQKDG--TE---LH---------ATEHYLITTVESVSTLEIIN   68 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~----~~~v~W~~~g--~~---~~---------~~~~~~~~~~~~~~~L~i~~   68 (579)
                      ..|...|.++.+.+|++++|.|.+.+.+    .+.+.|||++  ..   +.         ...++.........+|+|.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (240)
T 1moe_A            2 IVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDP   81 (240)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             CceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcC
Confidence            3566778899999999999999998877    6789999952  21   11         13466666666778999999


Q ss_pred             CCCCCCEEEEEEEEcCCee-eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec--CCeEEEEECC--
Q psy16852         69 PTKEDIGVYTCKATNIGGV-ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--  143 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--  143 (579)
                      ++.+|+|.|+|.+.+..+. ....+.+.|...+....++.+...+....+.+|+.++|.|.+.+.|  .+.+.|+++.  
T Consensus        82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g  161 (240)
T 1moe_A           82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPE  161 (240)
T ss_dssp             CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCC
Confidence            9999999999999987553 3345677776543211223344456677889999999999998876  3699999952  


Q ss_pred             EEc------c-----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        144 EEI------L-----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       144 ~~~------~-----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      ..+      .           ...+..+..+......+|.|.+++.+|+|.|+|.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          162 QGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             SCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            211      0           1123334433445668899999999999999999984

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.86  E-value=5.2e-21  Score=169.50  Aligned_cols=180  Identities=14%  Similarity=0.190  Sum_probs=124.0

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECC---EE------------ec---CCCCEEEEEeCCEEEEEEc
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDG---TE------------LH---ATEHYLITTVESVSTLEII   67 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g---~~------------~~---~~~~~~~~~~~~~~~L~i~   67 (579)
                      |.+...| ++.+.+|++++|.|.+.+. +.+.+.|||..   ..            ..   ...++.........+|.|.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            5666777 9999999999999999988 78899999932   10            10   1135666556678899999


Q ss_pred             CCCCCCCEEEEEEEEcCCe-----eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEE
Q psy16852         68 NPTKEDIGVYTCKATNIGG-----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWY  140 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~  140 (579)
                      +++.+|+|.|+|.+.+..|     .....+.+.|...+  ..+|.+...........|+.++|.|.+.+ .|.+ .|.|+
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~  158 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP--KSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWK  158 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC--CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCC--CCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEE
Confidence            9999999999999998664     22334567776432  13445544333334456799999999987 4666 89999


Q ss_pred             ECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852        141 RGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAE  190 (579)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (579)
                      +++..+............ ++    ...|.|.....+|+|.|+|.|.|..+...
T Consensus       159 k~g~~l~~~~~~~~~~~~-~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  211 (218)
T 3s96_B          159 ANGTPITQGVDTSNPTKE-GNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVE  211 (218)
T ss_dssp             ETTEEC---------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEE
T ss_pred             ECCEECcCceecCccccc-CCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccc
Confidence            999988653221111111 11    13488888888899999999999876544

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.7e-20  Score=165.86  Aligned_cols=170  Identities=19%  Similarity=0.226  Sum_probs=132.4

Q ss_pred             CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE
Q psy16852        104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV  183 (579)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  183 (579)
                      ..+.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.+++.+|+|.|+|.+.
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~   85 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----------TSELIFNAVHVKDAGFYVCRVN   85 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC-----------SSEEEETTCCGGGCEEEEEEEE
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC-----------CCEEEEccCChhhCeEeEEEEE
Confidence            35567777888899999999999999988899999999998876532           2479999999999999999999


Q ss_pred             cCCcee-EEEEEEEEeeccccC----CCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE
Q psy16852        184 NTFGRA-ECRANLVLRKATTID----KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE  258 (579)
Q Consensus       184 ~~~~~~-~~~~~~~v~~~~~~~----~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~  258 (579)
                      +..+.. .....+.+.......    ......+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....  
T Consensus        86 n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~--  163 (218)
T 3k0w_A           86 NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET--  163 (218)
T ss_dssp             CTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC--
T ss_pred             cCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC--
Confidence            987644 223445544221100    0001123566667777789999999999999999999999999999886542  


Q ss_pred             EeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       259 ~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                          ...|.|.++..+|+|.|+|.|.|..|..
T Consensus       164 ----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  191 (218)
T 3k0w_A          164 ----KKLYMVPYVDLEHQGTYWCHVYNDRDSQ  191 (218)
T ss_dssp             ----SSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             ----CCEEEEeecChhcCEEEEEEEEcCCCCc
Confidence                3479999999999999999999988763

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=1.7e-21  Score=167.70  Aligned_cols=169  Identities=9%  Similarity=0.028  Sum_probs=123.3

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +-+|.|...|.. .+.+|++|+|.|.+.+ +.+.+.|||+|..+..... ..........|.|.+++.+|+|.|+|.+.+
T Consensus         2 l~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   78 (188)
T 1oll_A            2 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (188)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence            457889888887 8999999999999865 3458999999987652110 001123457899999999999999999988


Q ss_pred             CCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCC
Q psy16852         84 IGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG  161 (579)
Q Consensus        84 ~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  161 (579)
                      ..+..  +..+.|.|.+..   .+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+|++..+..    ...  ....
T Consensus        79 ~~~~~~~s~~~~l~V~~~~---~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~~~--~~~~  147 (188)
T 1oll_A           79 GELWSEPSNLLDLVVTEMY---DTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRG--YGKV  147 (188)
T ss_dssp             TTEECCCCCCEEEEEESCS---CCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----EEE--ECSS
T ss_pred             CCCCCCCCCceEEEecccC---CCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc----ccc--CCCc
Confidence            65532  345666665421   234454433 345789999999999765 5579999998875543    111  1234


Q ss_pred             eEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        162 ECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       162 ~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      ...|.|.+++.+|+|.|+|.+.|..
T Consensus       148 ~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          148 QAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EEEEEEEECCGGGCEEEEEECEEET
T ss_pred             eeEEEECCCCcCCCcEEEEEEEcCC
Confidence            5789999999999999999998754

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.85  E-value=2.8e-21  Score=163.71  Aligned_cols=155  Identities=14%  Similarity=0.178  Sum_probs=120.3

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      -+|.+...|..+.+.+|+.++|.|.+.+.+ .+.+.|+++|..+....          ..+.|.+++.+|+|.|+|.+.+
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEEETT
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc----------cceEEEecccccCeEEEEEEeC
Confidence            457777788888999999999999998876 56899999999987653          3466778999999999999987


Q ss_pred             CCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852         84 IGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE  162 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  162 (579)
                      ...  ...+.+.|...      +.+.. .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....          ..
T Consensus        73 ~~~--s~~~~l~v~~~------~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----------~~  133 (170)
T 3ry4_A           73 TSL--SDPVHLTVLFE------WLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH----------LD  133 (170)
T ss_dssp             SBC--CCCEEEEEECC------SEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES----------SC
T ss_pred             CCc--eEeEEEEEECC------ceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC----------CC
Confidence            433  33466666542      22222 234567889999999999 445668999999988754211          12


Q ss_pred             EEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        163 CVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      ..|.|.++..+|+|.|+|.+.|..|.
T Consensus       134 ~~L~i~~v~~~d~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A          134 PTFSIPQANHSHSGDYHCTGNIGYTL  159 (170)
T ss_dssp             CEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CeEEEEeccccCCEEEEEEEEeCcCc
Confidence            46999999999999999999998875

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.85  E-value=2.1e-20  Score=166.18  Aligned_cols=182  Identities=14%  Similarity=0.152  Sum_probs=122.1

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCC-----CeeEEEECCEEec---------C------CCCEEEEE---eCCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPL-----PTMTWQKDGTELH---------A------TEHYLITT---VESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~-----~~v~W~~~g~~~~---------~------~~~~~~~~---~~~~~~L~i   66 (579)
                      ..++..+.+.+|++++|.|.+.+.|.     ..+.|+|++..+.         .      ..+..+..   ..+..+|.|
T Consensus         5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I   84 (222)
T 3sbw_C            5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQI   84 (222)
T ss_dssp             BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEE
T ss_pred             ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEE
Confidence            34567789999999999999876663     3899999764331         0      12222211   124578999


Q ss_pred             cCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEEC-CEE
Q psy16852         67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG-KEE  145 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~  145 (579)
                      .+++.+|+|.|+|.+.+ .+.....+.|.|...+   ..+...   ....+.+|+.+.|.|.+.|+|.+.+.|+++ +..
T Consensus        85 ~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~---~~~~~~---~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~  157 (222)
T 3sbw_C           85 TDVKLQDAGVYRCMISY-GGADYKRITVKVNAPY---NKINQR---ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV  157 (222)
T ss_dssp             SSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCC---CCCEEE---EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred             cCcccccCeEEEEEEEe-CCCceeEEEEEEECCC---CCCCce---eeeeecCCCcEEEEEEecCCCCCeEEEEECCCce
Confidence            99999999999999998 5666677788887432   111111   112567899999999999999999999998 444


Q ss_pred             ccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      +.............+......+..+..+|.|.|+|.|.|..|.......+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          158 LSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             ECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             ecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEec
Confidence            43221111111111111122222445689999999999999988888777764

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.85  E-value=8.2e-21  Score=166.89  Aligned_cols=170  Identities=16%  Similarity=0.194  Sum_probs=127.9

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-------------------CCCEEEEEeCCEEEEEEcCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-------------------TEHYLITTVESVSTLEIINP   69 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-------------------~~~~~~~~~~~~~~L~i~~~   69 (579)
                      |...|.+..+.+|++++|.|.+.+.+.+.+.||+++.....                   ..++.+  . .+.+|.|.++
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~--~-~~~~L~i~~v   78 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII--Y-SNGSLLFQMI   78 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEE--C-TTSCEEECSC
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEE--e-cCCeEEEccc
Confidence            45567778899999999999987778889999997542211                   112211  1 2347999999


Q ss_pred             CCCCCEEEEEEEEcCC-eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccC
Q psy16852         70 TKEDIGVYTCKATNIG-GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP  148 (579)
Q Consensus        70 ~~~d~G~Y~C~~~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~  148 (579)
                      +.+|+|.|+|.+.+.. +.....+.+.|...+   ..|.+......  +.+|+.+.|.|.+.+.| +.+.|++++..+..
T Consensus        79 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~  152 (208)
T 3r4d_A           79 TMKDMGVYTLDMTDENYRRTQATVRFHVHQPV---TQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQL  152 (208)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEEECCC---CCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCC
T ss_pred             cccCCeEEEEEEEcccCceeEEEEEEEeccCC---CCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCC
Confidence            9999999999999884 566667777776542   23444443333  78899999999998755 79999999998876


Q ss_pred             CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852        149 DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC  191 (579)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (579)
                      ..+..+..  .  ...|.|.++..+|+|.|+|.|.|..|...+
T Consensus       153 ~~~~~~~~--~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s  191 (208)
T 3r4d_A          153 TERMTLSQ--N--NSILRIDPIKREDAGEYQCEISNPVSVRRS  191 (208)
T ss_dssp             CSSEEEET--T--TTEEEESSCCGGGCEEEEEEEECTTCCEEC
T ss_pred             CCCeEEcC--C--CCEEEEeccCHHhCeEEEEEEecCCCcccC
Confidence            65544332  2  247999999999999999999999887543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.85  E-value=1.5e-20  Score=165.63  Aligned_cols=178  Identities=13%  Similarity=0.171  Sum_probs=124.7

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC---CCeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP---LPTMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINPT   70 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~---~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~~   70 (579)
                      .+.. |.++.+.+|++++|.|.+.+.+   .+.+.|||++  ..+            ....++..........|+|.+++
T Consensus         3 ~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   81 (212)
T 1q0x_L            3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ   81 (212)
T ss_dssp             CEEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC
Confidence            3455 8899999999999999998876   3689999963  222            12356666656677899999999


Q ss_pred             CCCCEEEEEEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC--eEEEEECCEEcc
Q psy16852         71 KEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEIL  147 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~  147 (579)
                      .+|+|.|+|.+.+..+... ....+.|...+  ..+|.+..........+|+.++|.|.+.+.+++  .|.|++++..+.
T Consensus        82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  159 (212)
T 1q0x_L           82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQP--KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVT  159 (212)
T ss_dssp             GGGCEEEEEEEECSSCEEECCCEEEEECCSC--CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             ccCCEEEEEEEecCchhhcCCCeEEEEecCC--CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCC
Confidence            9999999999998765332 33456664321  124454433333334578999999999886543  899999998876


Q ss_pred             CCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        148 PDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       148 ~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      ............++    .+.|.|..+..+|+|.|+|.|.|....
T Consensus       160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          160 AGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             TTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             CCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            54211100111111    246899999999999999999998654

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.85  E-value=3.6e-21  Score=174.53  Aligned_cols=259  Identities=16%  Similarity=0.160  Sum_probs=108.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEEe-cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTEL-HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      +...|.++.|.+|++++|+|.+....+..+.|.-  ....+ ..+.        ....|.|.+++.+  |.|+|++....
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g~--------~~~~~~l~~v~~~--~~y~C~~~~~~   71 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGN--------NRKVYELSNVQED--SQPMCYSNCPD   71 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSCS--------SEEEEEEESCCSC--CCCEEEEECSS
T ss_pred             eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCCC--------ceEEEEEEecccC--CeEEEEEEcCC
Confidence            3456788999999999999999643333588863  11112 1111        2246888888854  46999997554


Q ss_pred             eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC--eEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852         86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP--SICWYRGKEEILPDNGHTMEFNPTTGE  162 (579)
Q Consensus        86 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~  162 (579)
                      ......+.+.|+..|.   .+.+..  .+..+.+|+.++|.|.+.+. |..  .|+|||++..+.....     ......
T Consensus        72 ~~~~~~v~l~V~~~P~---~v~I~~--~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~-----~~~~~~  141 (291)
T 1mq8_A           72 GQSTAKTFLTVYWTPE---RVELAP--LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-----VGEPAE  141 (291)
T ss_dssp             CEEEEECEEEECBCCS---CCCBCC--CCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC-----CBTTEE
T ss_pred             ccEEEEEEEEEecCCC---CCEEec--CCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC-----CCCCce
Confidence            4566677788876542   233332  22347789999999999664 443  6999999977643221     111223


Q ss_pred             EEEEECcCCCCCCeEEEEEEEcCCce----e--EEEEEEEEeeccccCCCCccCCCeE-eccCCceeeCCCCeEEEEEEE
Q psy16852        163 CVLSISEATPQDEAVYSVKAVNTFGR----A--ECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLVPKDSTVTLEAEY  235 (579)
Q Consensus       163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~----~--~~~~~~~v~~~~~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~  235 (579)
                      .+|.+...+.+|.+.|+|+|.+..+.    .  ..+....+.         +..+|.. ........+.+|+.++|.|.+
T Consensus       142 ~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~---------V~~~P~~~~~~~~p~~l~eG~~v~l~C~~  212 (291)
T 1mq8_A          142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQ---------TFVLPATPPQLVSPRVLEVDTQGTVVCSL  212 (291)
T ss_dssp             EEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECB---------C----------------------------
T ss_pred             EEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEE---------EEecCCCCceecCCcCccCCCeEEEEEEc
Confidence            56777777777888999999987552    1  111112221         2233211 110111257789999999999


Q ss_pred             EccCCC---eEEEEECCEEeccCceEEeCCeEEEEEccc---CC--CCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        236 TGTPTP---EVKWFKNGKEIVSKDIETKDNVTKLVIKQT---TK--KTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       236 ~~~p~~---~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~---~~--~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      .|.+++   .+.|+++|+.+.....   ..+..+.+...   ..  ++.+.|+|.|.+..........++|.
T Consensus       213 ~g~~P~~~~~v~w~~~g~~l~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~  281 (291)
T 1mq8_A          213 DGLFPVSEAQVHLALGDQRLNPTVT---YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY  281 (291)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CCCCCCcccEEEEEECCEecCceee---ecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEE
Confidence            986554   6999999998875421   11223333333   23  34667788888754444445555554

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.85  E-value=4.3e-20  Score=166.94  Aligned_cols=176  Identities=16%  Similarity=0.232  Sum_probs=125.0

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EEe-----------------cCCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TEL-----------------HATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~~-----------------~~~~~~~~~~~--~~~~~L~i~   67 (579)
                      ..|.++.+.+|++++|.|.+.+.|  .+.+.|||++  ...                 ....++.+...  ....+|+|.
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   86 (247)
T 2ghw_B            7 VQSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMN   86 (247)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEEC
Confidence            456779999999999999998876  5689999942  111                 12245655543  356889999


Q ss_pred             CCCCCCCEEEEEEEEcCCee--eEEEEEEEEEeccc---------CCCCCceecCCCceEEccCCcEEEEEEEEeecCCe
Q psy16852         68 NPTKEDIGVYTCKATNIGGV--ATCSANLIVLEKEE---------SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPS  136 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g~--~~~~~~~~v~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  136 (579)
                      +++.+|+|.|+|.+.+..+.  ....+.|.|...+.         ...++.+...+..+.+.+|+.++|.|.+.+.|.+.
T Consensus        87 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~  166 (247)
T 2ghw_B           87 SLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSN  166 (247)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTC
T ss_pred             cCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccce
Confidence            99999999999999987332  22345677764321         01234455556677889999999999999888889


Q ss_pred             EEEEE--CCEEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        137 ICWYR--GKEEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       137 i~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      +.||+  ++..+.          .....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus       167 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          167 LAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             EEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             EEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence            99999  444321          111222333334556789999999999999999998754

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.85  E-value=2.7e-20  Score=170.90  Aligned_cols=180  Identities=13%  Similarity=0.181  Sum_probs=127.6

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE-----Eec---------CCCCEEEEEeCCEEEEEEcCCCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT-----ELH---------ATEHYLITTVESVSTLEIINPTK   71 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~-----~~~---------~~~~~~~~~~~~~~~L~i~~~~~   71 (579)
                      .+.|...|.++.+.+|++++|.|.+.+.+.+.+.|||++.     .+.         ...++.........+|+|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            4567778999999999999999999888888999999642     221         13466666666778999999999


Q ss_pred             CCCEEEEEEEEcCCee-eEEEEEEEEEecccC--------CCCCceecCCCceEEccCCcEEEEEEEEeec--CCeEEEE
Q psy16852         72 EDIGVYTCKATNIGGV-ATCSANLIVLEKEES--------GEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWY  140 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~g~-~~~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~  140 (579)
                      +|+|.|+|.+.|..+. ......+.|...+..        ..++.....+....+.+|+.++|.|.+.+.+  .+.+.||
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  171 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV  171 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence            9999999999986543 222356666543210        0112223334567889999999999998766  4899999


Q ss_pred             ECC--EEc---c--------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852        141 RGK--EEI---L--------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       141 ~~~--~~~---~--------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  185 (579)
                      +++  ..+   .              ...++.+..+...+...|.|.+++.+|+|.|+|.+.|.
T Consensus       172 k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          172 RQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            963  111   0              12233333333345578999999999999999999997

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.85  E-value=6.7e-21  Score=168.87  Aligned_cols=182  Identities=14%  Similarity=0.136  Sum_probs=127.0

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC---eeEEEECCEEecCC------------------CCEEEE---EeCCEEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKDGTELHAT------------------EHYLIT---TVESVSTLEI   66 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~g~~~~~~------------------~~~~~~---~~~~~~~L~i   66 (579)
                      ..|+.+.|.+|++++|.|.+.+.+.+   .|.|+|++..+...                  .++...   ......+|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            45788999999999999999887765   48999987543211                  111110   0112467999


Q ss_pred             cCCCCCCCEEEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEE
Q psy16852         67 INPTKEDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEE  145 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~  145 (579)
                      .+++.+|+|.|+|.+.+..+.... ...+.+...     ++..........+..|+.+.+.|.+.+.|++.|+|++++..
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~  158 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVP-----PLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG  158 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC-----CCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC
T ss_pred             eeccHHHCCceeEEEEeccCceeeeEEEEEEeee-----ccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcc
Confidence            999999999999999876544333 333333321     22333345556777899999999999999999999999876


Q ss_pred             ccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        146 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      +........ .......+.|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus       159 ~~~~~~~~~-~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          159 TTSSRSFKH-SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEEEEEEEC-SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             cccCceEec-CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            543211100 0001123579999999999999999999999887777666654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.85  E-value=2e-20  Score=165.32  Aligned_cols=191  Identities=16%  Similarity=0.240  Sum_probs=132.0

Q ss_pred             EEEeccceeeeeeeeeeccc----cCceeeeecCeeEEEeeeCCCeEEEEECCEEccC-----CCeEEEEE--CCCCeEE
Q psy16852        297 TITVAEAETVMMDVRVESHP----TASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE-----GKEVTIYQ--DTDGLCK  365 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~-----~~~~~~~~--~~~~~~~  365 (579)
                      .+.+..|..+.|.|.+...+    ...+.|+.....   .+.....+.+++++..+..     ..++....  ...+..+
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A            9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSD---NQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             EEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESS---SSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred             eEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCC---CCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence            45678899999999877655    235666532100   0011124555567766542     33443322  1123457


Q ss_pred             EEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEE-EeeCCCeEEEeeC
Q psy16852        366 LAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRG  444 (579)
Q Consensus       366 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~  444 (579)
                      |.|.+++.+|+|.|+|.|.|..|.....+.|.|..      +|.+........+..|+.++|.|.+ .|.|.|.+.|+++
T Consensus        86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~  159 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV------KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKL  159 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC------CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEEC
T ss_pred             EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEc------CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEEC
Confidence            99999999999999999999999888889999986      3433333333457889999999999 8999999999995


Q ss_pred             CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852        445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                      +..........                                     .....+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       160 ~~~~~~~~~~~-------------------------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  202 (214)
T 3jz7_A          160 SDSQTMPTPWL-------------------------------------AEMTSPVISVKNASSEYSGTYSCTVQNRVGSD  202 (214)
T ss_dssp             STTCCCCGGGG-------------------------------------GGTTSSEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CCCCccCccce-------------------------------------eccCCCEEEEecCCHHHCEEEEEEEEcCCCcE
Confidence            43221111000                                     01122359999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy16852        525 TCTATLSLL  533 (579)
Q Consensus       525 ~~~~~l~v~  533 (579)
                      ..++.|.|.
T Consensus       203 ~~~~~l~V~  211 (214)
T 3jz7_A          203 QCMLRLDVV  211 (214)
T ss_dssp             EEEEEECCB
T ss_pred             EEEEEEEEe
Confidence            999998864

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.85  E-value=1.8e-20  Score=168.37  Aligned_cols=182  Identities=12%  Similarity=0.134  Sum_probs=129.0

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E-----------E-ecCCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T-----------E-LHATEHYLITTVESVSTLEIINPTKE   72 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~-----------~-~~~~~~~~~~~~~~~~~L~i~~~~~~   72 (579)
                      +.+...|.++.+.+|++++|.|.+.+.+.+.+.|||++  .           . .....++.........+|+|.+++.+
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE  104 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            45666788899999999999999988888899999942  1           1 11245676666677889999999999


Q ss_pred             CCEEEEEEEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c-CCeEEEEECCEEccCC
Q psy16852         73 DIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-TPSICWYRGKEEILPD  149 (579)
Q Consensus        73 d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~  149 (579)
                      |+|.|+|.+.+..+.. .....+.|...   ..+|.+..........+|+.++|.|.+.+. | .+.|.|++++..+...
T Consensus       105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~  181 (237)
T 3sob_L          105 DFATYYCQQSYTTPPTFGQGTKVEIKRT---VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  181 (237)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEECC---CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             hCeEEEEeeccCCceEEcCcEEEEEecC---CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence            9999999998766432 23456666542   234555443333344568899999999874 4 4899999999987643


Q ss_pred             C-CceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852        150 N-GHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAEC  191 (579)
Q Consensus       150 ~-~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (579)
                      . .........++    ...|.|.....+|+|.|+|.|.|.......
T Consensus       182 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  228 (237)
T 3sob_L          182 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV  228 (237)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred             eeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCce
Confidence            1 00000011111    356889999999999999999998764433

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.85  E-value=1.3e-20  Score=164.03  Aligned_cols=163  Identities=16%  Similarity=0.157  Sum_probs=120.4

Q ss_pred             CceecCCCceEEccCCcEEEEEEEEeecCCe-EEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      |.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+....            ..|.|.+++.+|+|.|+|.+.|
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~------------~~L~i~~v~~~D~G~Y~C~a~n   75 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA------------SSYFIDAATVDDSGEYRCQTQL   75 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS------------SEEEESSCCGGGCEEEEEEETT
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc------------cEEEEecccccCCEEEEEEeCC
Confidence            4455555557788999999999998887765 99999998875432            4799999999999999999987


Q ss_pred             CCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCCeEEEEECCEEeccCceEEeCCe
Q psy16852        185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTPEVKWFKNGKEIVSKDIETKDNV  263 (579)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~i~~~~~~~~~~~  263 (579)
                      .....  ...+.+.           .+|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+...     ...
T Consensus        76 ~~~s~--~~~l~V~-----------~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-----~~~  136 (204)
T 3sgj_C           76 STLSD--PVQLEVH-----------IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-----HHN  136 (204)
T ss_dssp             SBCCC--CEEEEEE-----------CSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----EEC
T ss_pred             Ccccc--cEEEEEe-----------cCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-----cCC
Confidence            53332  3344443           3344433333 567789999999999765 55799999999987432     234


Q ss_pred             EEEEEcccCCCCCeEEEEEEEcCCe-eeEEEEEEEEE
Q psy16852        264 TKLVIKQTTKKTTGKYEIRVVNEAG-EARTSGSVTIT  299 (579)
Q Consensus       264 ~~l~i~~~~~~d~G~y~C~a~n~~g-~~~~~~~~~v~  299 (579)
                      ..|.|.++..+|+|.|+|.|.|..+ ..+..+.+.|.
T Consensus       137 ~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (204)
T 3sgj_C          137 SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT  173 (204)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEe
Confidence            5799999999999999999999543 33334444443

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.84  E-value=1.8e-21  Score=171.51  Aligned_cols=177  Identities=18%  Similarity=0.176  Sum_probs=124.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEec------------CCCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTELH------------ATEHYLITTVESVSTLEIINPTKEDI   74 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~~~~~d~   74 (579)
                      +.. |.++.+.+|++++|.|.+.+.+.+.+.|||+  |..+.            ...++..........|.|.+++.+|+
T Consensus         3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   81 (212)
T 1nfd_E            3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE   81 (212)
T ss_dssp             EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred             eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccC
Confidence            445 8889999999999999998777778999985  33221            13566666666778999999999999


Q ss_pred             EEEEEEEEcC-Ceee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCC
Q psy16852         75 GVYTCKATNI-GGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPD  149 (579)
Q Consensus        75 G~Y~C~~~~~-~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~  149 (579)
                      |.|+|.+.|. .+..  .....+.|...+  ..+|.+........+.+|+.++|.|.+.+. |+ +.|.|++++..+...
T Consensus        82 G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~--~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  159 (212)
T 1nfd_E           82 AAYYCLSSYGDNNDLVFGSGTQLTVLRGP--KSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG  159 (212)
T ss_dssp             SEEEEEEEETTTTEEEECCCEEEEEECCC--CBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             EEEEEEEEcccCcccccCCceEEEEccCC--CCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC
Confidence            9999999962 2221  223456664322  124444443333344579999999999887 54 799999999987654


Q ss_pred             CCceEEEcCCCC---eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        150 NGHTMEFNPTTG---ECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       150 ~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      ..........++   .+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          160 VKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             eecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            221111111111   245889999999999999999998664

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.84  E-value=3e-21  Score=177.11  Aligned_cols=181  Identities=12%  Similarity=0.213  Sum_probs=121.6

Q ss_pred             CccccccCceeeeCCCCEEEEEEEE---eeCCCeeEEEECCEEecCC------------------CCEEEEE--eCCEEE
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVE---GHPLPTMTWQKDGTELHAT------------------EHYLITT--VESVST   63 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~---~~~~~~v~W~~~g~~~~~~------------------~~~~~~~--~~~~~~   63 (579)
                      +.+...|.++.+.+|++++|.|.+.   +.+.+.+.|++++......                  .+..+..  ...+.+
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            4577788889999999999999997   5666789999965432111                  2222210  123477


Q ss_pred             EEEcCCCCCCCEEEEEEEEcCCeeeE--EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE---EeecCCeEE
Q psy16852         64 LEIINPTKEDIGVYTCKATNIGGVAT--CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV---TGRPTPSIC  138 (579)
Q Consensus        64 L~i~~~~~~d~G~Y~C~~~~~~g~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~i~  138 (579)
                      |.|.+++.+|+|.|+|.+.+..+...  ..+.|.|.  +         ..+....+.+|+.++|.|.+   .+.|.+.+.
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~---------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~  154 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--P---------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVN  154 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--C---------CCCSEEEEETTCCEEECCBCEESSSSCCCEEE
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--c---------cCCCccccccCCcEEEEEEecCCCCCCccceE
Confidence            99999999999999999998765443  34444443  1         12335678899999999999   456889999


Q ss_pred             EEECCEEccCC--------------------CCceEEEc--CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy16852        139 WYRGKEEILPD--------------------NGHTMEFN--PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV  196 (579)
Q Consensus       139 W~~~~~~~~~~--------------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~  196 (579)
                      |++++......                    ...+....  .......|.|.+++.+|+|.|+|.|.|..+.......+.
T Consensus       155 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~  234 (268)
T 3mj6_A          155 WMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH  234 (268)
T ss_dssp             EEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEE
Confidence            99943211100                    00011111  112346899999999999999999999888877777776


Q ss_pred             Ee
Q psy16852        197 LR  198 (579)
Q Consensus       197 v~  198 (579)
                      +.
T Consensus       235 V~  236 (268)
T 3mj6_A          235 VV  236 (268)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.84  E-value=2.4e-20  Score=167.65  Aligned_cols=179  Identities=14%  Similarity=0.171  Sum_probs=124.8

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E---Eec---------CCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T---ELH---------ATEHYLITTVESVSTLEIINPTKE   72 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~L~i~~~~~~   72 (579)
                      +.|...|.++.+.+|++++|.|.+.+.+.+.+.|||+.  .   .+.         ...++.........+|+|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE   81 (242)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence            45677899999999999999999988888899999953  1   111         134666665666789999999999


Q ss_pred             CCEEEEEEEEcCCeee-EEEEEEEEEecccC-------CCCCceecCCCceEEccCCcEEEEEEEEeec--CCeEEEEEC
Q psy16852         73 DIGVYTCKATNIGGVA-TCSANLIVLEKEES-------GEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRG  142 (579)
Q Consensus        73 d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~  142 (579)
                      |+|.|+|.+.+..+.. ...+.|.|...+..       ..++.....+....+.+|++++|.|.+.+.+  .+.+.||++
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence            9999999999875432 23456777554310       0111122223334688999999999998765  478999995


Q ss_pred             C--EEcc----------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852        143 K--EEIL----------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       143 ~--~~~~----------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  185 (579)
                      .  ..+.                ...+..+..+......+|.|.+++.+|+|.|+|.+.+.
T Consensus       162 ~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          162 FPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             CTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            2  2110                12233333333455679999999999999999999873

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.84  E-value=4.8e-21  Score=162.44  Aligned_cols=154  Identities=21%  Similarity=0.230  Sum_probs=113.4

Q ss_pred             ceeeeCCCCEEEEEEEEe--eCCCeeEEEECCEEec----------CCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852         15 PVVSHQEQPALFTCKVEG--HPLPTMTWQKDGTELH----------ATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~--~~~~~v~W~~~g~~~~----------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .+.+.+|++++|.|...+  .+.+.|.|+|++..+.          ...++.+  . .+++|.|.+++.+|+|.|+|.+.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~--~-~~gsL~I~~v~~~D~G~Y~C~~~   81 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI--L-ANGDLKIKNLTRDDSGTYNVTVY   81 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE--C-TTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE--C-CCCcEEEcccccccCEEEEEEEE
Confidence            477899999999995322  3456899999997652          2344443  1 22359999999999999999999


Q ss_pred             cCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852         83 NIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT  160 (579)
Q Consensus        83 ~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  160 (579)
                      |..|..  ...+.|.|...+   ..|.        ....+..+.|.|.+.+.|.+.|.|++++..+....+         
T Consensus        82 n~~g~~~~~~~~~l~V~~~~---~~p~--------i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~---------  141 (176)
T 1hng_A           82 STNGTRILNKALDLRILEMV---SKPM--------IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------  141 (176)
T ss_dssp             ETTCCEEEEEEEEEEEECCC---CCCE--------EEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS---------
T ss_pred             eCCCCEEEEEEEEEEEeCCC---CCCE--------EEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc---------
Confidence            988876  556677776431   1122        223355699999999999999999999987754332         


Q ss_pred             CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852        161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANL  195 (579)
Q Consensus       161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  195 (579)
                          +.|..+..+|+|.|+|.|.|..|.......+
T Consensus       142 ----~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          142 ----KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             ----SEEEEECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             ----EEEEEEEccCCeEEEEEEEecCCCceecccc
Confidence                3344677899999999999999877665443

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.84  E-value=2e-20  Score=164.98  Aligned_cols=179  Identities=13%  Similarity=0.134  Sum_probs=127.7

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC---EE--e---------cCCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG---TE--L---------HATEHYLITTVESVSTLEIINPTKE   72 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g---~~--~---------~~~~~~~~~~~~~~~~L~i~~~~~~   72 (579)
                      |.+...|..+.+.+|++++|.|.+.+.+.+.+.|||.+   ..  +         ....++.........+|.|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            56777799999999999999999998888899999832   11  1         1245666666667889999999999


Q ss_pred             CCEEEEEEEEcCCee-eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC--CeEEEEECCEEccCC
Q psy16852         73 DIGVYTCKATNIGGV-ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKEEILPD  149 (579)
Q Consensus        73 d~G~Y~C~~~~~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~  149 (579)
                      |+|.|+|.+.+..+. ......+.|...   ..+|.+...+.......|+.++|.|.+.+.++  +.+.|++++..+...
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  158 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRA---DAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG  158 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCC---CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             cCEEEEEecccCCceEEcCCceEEEecc---CCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence            999999999886542 233455666322   23455554444444557888999999988665  499999999987643


Q ss_pred             CCceEEE-cCCCC----eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        150 NGHTMEF-NPTTG----ECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       150 ~~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      ....... ...++    ...|.|.....+|+|.|+|.+.|....
T Consensus       159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            1011100 11111    246888888888999999999997644

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.84  E-value=3.4e-20  Score=163.15  Aligned_cols=182  Identities=13%  Similarity=0.097  Sum_probs=119.1

Q ss_pred             EEEeccc--eeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEEC---CEEccCCCeEEEEECCCCeEEEEEccc
Q psy16852        297 TITVAEA--ETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD---GTPMKEGKEVTIYQDTDGLCKLAISEV  371 (579)
Q Consensus       297 ~v~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~  371 (579)
                      .+.+.+|  ..+.|.|.+                   .+ |.+.+.|++.   +..+..+..... . ..+  .|.|.++
T Consensus        16 ~v~v~eG~~~~v~L~C~~-------------------~~-p~~~v~w~~~~~~g~~~~~~~~~~~-~-~~~--~l~I~~v   71 (213)
T 2x1w_L           16 VVYITENKNKTVVIPCLG-------------------SI-SNLNVSLCARYPEKRFVPDGNRISW-D-SKK--GFTIPSY   71 (213)
T ss_dssp             EEEECCSTTCEEEECCCB-------------------SS-TTCCEEEEEETTTEEECCCSSSCEE-E-TTT--EEEEEGG
T ss_pred             EEEEecCCCccEEEeecc-------------------CC-CCcEEEEEhhcCCCccccCCCcccc-c-CCc--cEEEccC
Confidence            4567788  888888864                   22 5567888774   666655543322 2 222  6999999


Q ss_pred             CCCCCEEEEEEEEcCceeEEEE-EEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEeeCC--CeEEEeeCCEE
Q psy16852        372 FPENAGLYSCTAVNPVGEAVAA-ATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKEE  447 (579)
Q Consensus       372 ~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~~~~  447 (579)
                      ..+|+|.|+|.|.|..+..... +.|.|..    ..+|.+.. +.....+.+|+.++|.|.+.|.|.  +.+.|++++..
T Consensus        72 ~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~----~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~  147 (213)
T 2x1w_L           72 MISYAGMVFCEAKINDESYQSIMYIVVVVG----YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK  147 (213)
T ss_dssp             GTTTCSEEEEEEC----CEECCCEEEEECB----CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSS
T ss_pred             ChhcCceEEEEEEECCeeEEEEEEEEEEeC----CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCc
Confidence            9999999999999864443322 5666633    12344443 444458999999999999998664  48999998876


Q ss_pred             cCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEE
Q psy16852        448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT  527 (579)
Q Consensus       448 l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  527 (579)
                      +..........            .....  +.             .....++|+|.+++.+|+|.|+|.|.|..|....+
T Consensus       148 ~~~~~~~~~~~------------~~~~~--~~-------------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~  200 (213)
T 2x1w_L          148 HQHKKLVNRDL------------KTQSG--SE-------------MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS  200 (213)
T ss_dssp             CCSEEEEEEEE------------CCCSS--CS-------------CEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             cceEEEecccc------------ccccC--cc-------------ceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEE
Confidence            42210000000            00000  00             01123569999999999999999999999999999


Q ss_pred             EEEEEe
Q psy16852        528 ATLSLL  533 (579)
Q Consensus       528 ~~l~v~  533 (579)
                      +.|.|.
T Consensus       201 ~~l~V~  206 (213)
T 2x1w_L          201 TFVRVH  206 (213)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999975

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.84  E-value=1.5e-20  Score=170.73  Aligned_cols=181  Identities=13%  Similarity=0.130  Sum_probs=127.1

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKDG--TEL------------HATEHYLITTVESVSTLEI   66 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i   66 (579)
                      +|.+...|..+.+.+|++++|.|.+.+.+     .+.+.|||++  ..+            ....++.........+|.|
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  117 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKI  117 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEE
Confidence            67777789999999999999999998877     3789999843  221            1135666666667789999


Q ss_pred             cCCCCCCCEEEEEEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeec-C-CeEEEEECC
Q psy16852         67 INPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP-T-PSICWYRGK  143 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~-~~i~W~~~~  143 (579)
                      .+++.+|+|.|+|.|.|..+... ....+.|....   .+|.+..........+|+.++|.|.+.+.+ + +.+.|++++
T Consensus       118 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~---~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g  194 (254)
T 2c1o_A          118 SRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDG  194 (254)
T ss_dssp             SSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESS
T ss_pred             CcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC---CCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECC
Confidence            99999999999999998755322 23456664321   234444333322334688999999998854 4 469999999


Q ss_pred             EEccCCCCceEEEcC-CCC----eEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        144 EEILPDNGHTMEFNP-TTG----ECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       144 ~~~~~~~~~~~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      ..+............ .++    .+.|.|.++..+|+|.|+|.|.|.....
T Consensus       195 ~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          195 SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             SEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            887654111111000 111    3579999999999999999999986643

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.84  E-value=2.1e-20  Score=158.52  Aligned_cols=159  Identities=19%  Similarity=0.192  Sum_probs=114.9

Q ss_pred             EEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEcc----------CCCeEEEEECCCCeEE
Q psy16852        296 VTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK----------EGKEVTIYQDTDGLCK  365 (579)
Q Consensus       296 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~----------~~~~~~~~~~~~~~~~  365 (579)
                      ..|.+..|..+.|.|....                 .+.|.+.|.|++++..+.          ...++.+  ..++  .
T Consensus         4 ~~v~~~~G~~v~L~c~~~~-----------------~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~--~~~g--s   62 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQ-----------------MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI--LANG--D   62 (176)
T ss_dssp             EEEEEETTSCEEECCTTCC-----------------CCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE--CTTS--C
T ss_pred             eEEEEEcCCcEEEcCCCCC-----------------cccccccEEEEeCCceeEEEcCCCeecCCCCeEEE--CCCC--c
Confidence            3466778889999884211                 112345788888886542          2334433  2233  5


Q ss_pred             EEEcccCCCCCEEEEEEEEcCceeE--EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEee
Q psy16852        366 LAISEVFPENAGLYSCTAVNPVGEA--VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR  443 (579)
Q Consensus       366 l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~  443 (579)
                      |.|.++..+|+|.|+|.|.|..|..  ...+.|.|...+   ..|.+.        ..+..++|.|.+.|.|.|.+.|++
T Consensus        63 L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~---~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~  131 (176)
T 1hng_A           63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV---SKPMIY--------WECSNATLTCEVLEGTDVELKLYQ  131 (176)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCC---CCCEEE--------EETTTTEEEEECSSCSSCEEEEEE
T ss_pred             EEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCC---CCCEEE--------ecCCcEEEEEEecCCCCcEEEEEE
Confidence            9999999999999999999999986  566777776521   233333        235569999999999999999999


Q ss_pred             CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       444 ~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      +|..+..+.+                                              +.|..+..+|+|.|+|.|.|..|.
T Consensus       132 ~g~~l~~~~~----------------------------------------------~~i~~~~~~d~G~Y~C~a~N~~g~  165 (176)
T 1hng_A          132 GKEHLRSLRQ----------------------------------------------KTMSYQWTNLRAPFKCKAVNRVSQ  165 (176)
T ss_dssp             TTEEEEEESS----------------------------------------------SEEEEECSCCSSCEEEEEEETTEE
T ss_pred             CCEECCCCCc----------------------------------------------EEEEEEEccCCeEEEEEEEecCCC
Confidence            9988743322                                              344467789999999999999999


Q ss_pred             EEEEEEEEE
Q psy16852        524 VTCTATLSL  532 (579)
Q Consensus       524 ~~~~~~l~v  532 (579)
                      ....+.|.+
T Consensus       166 ~~~~~~l~~  174 (176)
T 1hng_A          166 ESEMEVVNC  174 (176)
T ss_dssp             EEEEECCCC
T ss_pred             ceecccccC
Confidence            988877754

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.84  E-value=3.7e-21  Score=165.28  Aligned_cols=159  Identities=16%  Similarity=0.224  Sum_probs=119.0

Q ss_pred             CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEE--ecC------------CCCEEEEE---eCCEEEEEEcCCCCCCCEE
Q psy16852         14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTE--LHA------------TEHYLITT---VESVSTLEIINPTKEDIGV   76 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~--~~~------------~~~~~~~~---~~~~~~L~i~~~~~~d~G~   76 (579)
                      +.+.+.+|++++|.|.+.+.+.+.+.|++++..  +..            ..++....   ..+..+|.|.+++.+|+|.
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            357799999999999998888889999999863  211            11121111   1224669999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEE
Q psy16852         77 YTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF  156 (579)
Q Consensus        77 Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  156 (579)
                      |+|.+.+..+    .+.+.|....          .+....+.+|+.++|.|.+.+.|.+.+.|++++..+.       . 
T Consensus        83 Y~C~~~~~~~----~~~l~V~~~~----------~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------~-  140 (184)
T 2ny1_B           83 YICEVEDQKE----EVQLLVFGLT----------ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------Q-  140 (184)
T ss_dssp             EEEEETTEEE----EEEEEEEEEE----------ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-------E-
T ss_pred             EEEEEEcCCC----cEEEEEEEec----------CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-------c-
Confidence            9999987544    4455554211          1223467899999999999888999999999876441       1 


Q ss_pred             cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                          ....|.|.+++.+|+|.|+|.|.|..+.......+.|.
T Consensus       141 ----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~  178 (184)
T 2ny1_B          141 ----GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL  178 (184)
T ss_dssp             ----ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ----CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEE
Confidence                12479999999999999999999988887777777665

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.84  E-value=4e-20  Score=160.49  Aligned_cols=169  Identities=13%  Similarity=0.064  Sum_probs=122.4

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      .|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++..+....   ...........|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR---QNPLEPKNKARFSIPSMTEDYAGRYRCYYRS   79 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE---ECCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc---cccccCCceEEEEeccCCcccCceEEEEEeC
Confidence            4555555555 7889999999999987 778999999988664311   1111123457899999999999999999999


Q ss_pred             CCcee--EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE----
Q psy16852        185 TFGRA--ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE----  258 (579)
Q Consensus       185 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~----  258 (579)
                      ..+..  .....+.+..        ...+|.+...+.. .+.+|+.++|.|.+.+. ++.+.|+++|..+......    
T Consensus        80 ~~g~~~~s~~~~l~V~~--------~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~  149 (196)
T 3p2t_A           80 PVGWSQPSDPLELVMTG--------AYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHG  149 (196)
T ss_dssp             TTEEBCCCCCEEEEEEC--------SSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEE
T ss_pred             CCcccCCCccEEEEecC--------CCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccccc
Confidence            88732  2233444431        1134555544443 57899999999999874 4589999999876543311    


Q ss_pred             EeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852        259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAG  288 (579)
Q Consensus       259 ~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g  288 (579)
                      .......|.|.+++.+|+|.|+|.|.|..+
T Consensus       150 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          150 AQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             ccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            223457899999999999999999999876

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=6.7e-21  Score=171.25  Aligned_cols=227  Identities=11%  Similarity=0.047  Sum_probs=123.6

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHY-LITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      .+-+|.|...|. ..+.+|++|+|.|.+.+ +.+.|.|||+|..+...... ..........|.|.+++.+|+|.|+|.+
T Consensus         4 ~~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   81 (257)
T 1b6u_A            4 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG   81 (257)
T ss_dssp             -CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred             cCCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence            355788888786 67999999999999964 45689999998754311000 0000123578999999999999999999


Q ss_pred             EcCC-----eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEE
Q psy16852         82 TNIG-----GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF  156 (579)
Q Consensus        82 ~~~~-----g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  156 (579)
                      .+..     ...+..+.|.|.+..   ..|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|++..+........ .
T Consensus        82 ~~~~~~~~~s~~S~~~~L~V~~~~---~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~-~  155 (257)
T 1b6u_A           82 SVTHSPYQLSAPSDPLDIVITGLY---EKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGP-K  155 (257)
T ss_dssp             ECSSCTTSCCCCCCCEEEEEECSS---CCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBC-C
T ss_pred             eccCCCccccccCCCEEEecccCC---CCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCccccccc-c
Confidence            8642     123445677776532   2445544433 356899999999998764 469999999876543321111 0


Q ss_pred             cCCCCeEEEEECcCCCCCCeEEEEEEEcCCc---eeEEEEEEEEeeccccCCCCccCCCeEeccC-CceeeCCCCeEEEE
Q psy16852        157 NPTTGECVLSISEATPQDEAVYSVKAVNTFG---RAECRANLVLRKATTIDKPRVLEAPTIVRPL-QALLVPKDSTVTLE  232 (579)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~  232 (579)
                      ........|.|.+++  |+|.|+|.+.+...   ....+..+.+.+         ..+|.+..+. .......|..+.|.
T Consensus       156 ~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V---------~g~p~~~~p~~~~~~~~~g~~~~l~  224 (257)
T 1b6u_A          156 VNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSV---------TGNPSNSWPSPTEPSSETGNPRHLH  224 (257)
T ss_dssp             SSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECC---------BCCC---------------------
T ss_pred             cCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEE---------eccCCCCCCCCcccCccCCCeEEEE
Confidence            011125689999998  99999999997532   112222233321         1333332111 12235568899999


Q ss_pred             EEEEccCCCeEEEEECC
Q psy16852        233 AEYTGTPTPEVKWFKNG  249 (579)
Q Consensus       233 C~~~~~p~~~v~W~~~~  249 (579)
                      |.+ |.+-+.+.|...+
T Consensus       225 ~~~-~~~~~~~~~~~~~  240 (257)
T 1b6u_A          225 AAA-EQKLISEEDLNLD  240 (257)
T ss_dssp             -----------------
T ss_pred             EEE-cchHHHHHHhhhh
Confidence            876 5666688887644

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.84  E-value=3.4e-20  Score=167.96  Aligned_cols=179  Identities=14%  Similarity=0.199  Sum_probs=126.5

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC-----EE---------ecCCCCEEEEEeCCEEEEEEcCCCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG-----TE---------LHATEHYLITTVESVSTLEIINPTK   71 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g-----~~---------~~~~~~~~~~~~~~~~~L~i~~~~~   71 (579)
                      .+.+...|.++.+.+|++++|.|.+.+.+.+.+.|||+.     ..         .....++.........+|+|.+++.
T Consensus         4 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   83 (250)
T 3esu_F            4 DIVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ   83 (250)
T ss_dssp             CCCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence            355677788999999999999999999888899999953     11         1123566666666778999999999


Q ss_pred             CCCEEEEEEEEcCCeeeE-EEEEEEEEecccC-------------CCCCceecCCCceEEccCCcEEEEEEEEeec--CC
Q psy16852         72 EDIGVYTCKATNIGGVAT-CSANLIVLEKEES-------------GEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TP  135 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~  135 (579)
                      +|+|.|+|.+.|..+... ....+.|...+..             ..++.....+....+.+|+.++|.|.+.+.+  .+
T Consensus        84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  163 (250)
T 3esu_F           84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSS  163 (250)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGS
T ss_pred             hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCC
Confidence            999999999988655322 3345666542100             0122233345567789999999999998766  68


Q ss_pred             eEEEEEC--CEEcc-----------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        136 SICWYRG--KEEIL-----------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       136 ~i~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      .+.||++  +..+.                 ...++.+..+......+|.|.+++.+|+|.|+|.+.+
T Consensus       164 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          164 WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            9999996  32210                 0123334333334567899999999999999999997

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=2.9e-19  Score=153.47  Aligned_cols=161  Identities=14%  Similarity=0.242  Sum_probs=121.7

Q ss_pred             eEEccCCcEEEEEEEEeecCC--eEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852        115 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR  192 (579)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (579)
                      ..+.+|+.++|.|.+.+.|.+  .+.|++++..+......       .....|.|.  +.+|+|.|+|.+.+...   ..
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-------~~~~~l~i~--~~~d~G~Y~C~~~n~~~---~~   75 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-------GQKTEFKVD--SDDQWGEYSCVFLPEPM---GT   75 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-------CSEEEEEEC--GGGCCEEEEEEEESTTS---CE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-------CCcEEEEEe--chhhCeEEEEEEECCcC---cE
Confidence            456789999999999887776  99999999887654322       123456666  68899999999998322   33


Q ss_pred             EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC-CCeEEEEE---CCE-EeccCc-----eEEeCC
Q psy16852        193 ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP-TPEVKWFK---NGK-EIVSKD-----IETKDN  262 (579)
Q Consensus       193 ~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~---~~~-~i~~~~-----~~~~~~  262 (579)
                      ..+.+.           .+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++   ++. .+....     ......
T Consensus        76 ~~l~V~-----------~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (184)
T 3b5h_A           76 ANIQLH-----------GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG  144 (184)
T ss_dssp             EEEEEC-----------CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETT
T ss_pred             EEEEEe-----------cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCC
Confidence            444443           456666666666789999999999999998 78999999   444 443221     223345


Q ss_pred             eEEEEEcccC-CCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        263 VTKLVIKQTT-KKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       263 ~~~l~i~~~~-~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                      ...|.|.++. .+|+|.|+|.|.|..|.....+.|.|
T Consensus       145 ~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  181 (184)
T 3b5h_A          145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  181 (184)
T ss_dssp             EEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEE
Confidence            6789999999 89999999999999998887766665

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.84  E-value=1e-19  Score=158.09  Aligned_cols=159  Identities=14%  Similarity=0.188  Sum_probs=112.5

Q ss_pred             eEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEE
Q psy16852        115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRAN  194 (579)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  194 (579)
                      +.+.+|+.++|.|.+.|.|.+.|.|++......  .. ....  ......|.|.+++.+|+|.|+|.+.|..+.......
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~   85 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NG-KVTN--EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SS-EEEE--ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cc-eEEE--cCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEE
Confidence            445589999999999999999999998432111  11 1111  123567999999999999999999999877666666


Q ss_pred             EEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC--CeEEEEECCEEeccCceEE-------eCCeE
Q psy16852        195 LVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT--PEVKWFKNGKEIVSKDIET-------KDNVT  264 (579)
Q Consensus       195 ~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~v~W~~~~~~i~~~~~~~-------~~~~~  264 (579)
                      +.|....        ..+.+..  . ..+.+|+.++|.|.+.+. |.  +.+.|++++..+.......       .....
T Consensus        86 l~V~~~p--------~~~~~~~--~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~  154 (202)
T 1vca_A           86 VEIYSFP--------KDPEIHL--S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSL  154 (202)
T ss_dssp             EEEEBCC--------SCCEEEE--S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEE
T ss_pred             EEEEeCC--------CCCEeCC--c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEE
Confidence            6654210        1122221  2 457899999999999875 43  3799999999875432110       12234


Q ss_pred             EEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        265 KLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       265 ~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      .|.|.....+|.|.|+|+|.|..+.
T Consensus       155 ~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          155 EVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             EEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             EEEEEeeeccCCCeEEEEEEccccC
Confidence            5678888889999999999998775

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.84  E-value=9.9e-20  Score=162.03  Aligned_cols=187  Identities=20%  Similarity=0.229  Sum_probs=125.4

Q ss_pred             EEeccceeeeeeeeeeccccC---ceeeeecCeeEEEeeeCCCeEEEEECCEEccCC------CeEEEEEC--CCCeEEE
Q psy16852        298 ITVAEAETVMMDVRVESHPTA---SFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG------KEVTIYQD--TDGLCKL  366 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~------~~~~~~~~--~~~~~~l  366 (579)
                      |.+..|+.+.|.|.+...+..   .+.|+.        +.+.+.+.|+++|+.+...      .+......  ..+...|
T Consensus        14 V~v~~G~~v~L~C~v~~~~~~~~~~V~W~k--------~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   85 (226)
T 4f80_A           14 ILAMVGEDADLPCHLFPTMSAETMELKWVS--------SSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAAL   85 (226)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEE--------TTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEE
T ss_pred             EEEEcCCcEEEEEEEECCCCCCceEEEEEE--------CCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEE
Confidence            446788999999987654433   577753        3455677888888765432      22222221  2346789


Q ss_pred             EEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEe-eCCCeEEEeeCC
Q psy16852        367 AISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGK  445 (579)
Q Consensus       367 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~  445 (579)
                      .|.+++.+|+|.|+|.|.|..|.....+.+.+..        ..........+.+|+.+.|.|.+.| .|.|+|+|++++
T Consensus        86 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~--------~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~  157 (226)
T 4f80_A           86 RIHNVTASDSGKYLCYFQDGDFYEKALVELKVAA--------LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK  157 (226)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB--------CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTT
T ss_pred             EEeeCchHHCeeEEEEEECCCcEEEEEEEEeecc--------ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECC
Confidence            9999999999999999999988877666555543        1222233456788999999999988 599999999976


Q ss_pred             EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE
Q psy16852        446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT  525 (579)
Q Consensus       446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  525 (579)
                      ..+.......+..                ..                 ++....+.+..++.+|+|.|+|.|.|..|...
T Consensus       158 ~~~~~~~~~~~~~----------------~~-----------------~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~  204 (226)
T 4f80_A          158 GENIPTVEAPVVA----------------DG-----------------VGLYAVAASVIMRGSSGEGVSCTIRSSLLGLE  204 (226)
T ss_dssp             SCBCCCEECCCEE----------------CT-----------------TSCEEEEEEEEECC----CEEEEEEETTTTEE
T ss_pred             ceEcCCCceEEEE----------------CC-----------------CCcEEEEEEEEechhcCcEEEEEEEeCCCCeE
Confidence            5443332221111                11                 12223355667788999999999999999999


Q ss_pred             EEEEEEEe
Q psy16852        526 CTATLSLL  533 (579)
Q Consensus       526 ~~~~l~v~  533 (579)
                      .++.|.|.
T Consensus       205 ~~~~v~v~  212 (226)
T 4f80_A          205 KTASISIA  212 (226)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEEEC
Confidence            99988864

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.84  E-value=1.9e-21  Score=171.16  Aligned_cols=181  Identities=18%  Similarity=0.276  Sum_probs=129.4

Q ss_pred             CceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEc----------cCCCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852        106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI----------LPDNGHTMEFNPTTGECVLSISEATPQDE  175 (579)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (579)
                      ..+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+          ......++....    ..|.|.+++.+|+
T Consensus         5 ~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~~d~   80 (209)
T 1nbq_A            5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTREDT   80 (209)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCTTSC
T ss_pred             EEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCHHHC
Confidence            34555667778899999999999998899999999976542          111111122211    5799999999999


Q ss_pred             eEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE-EccCCCeEEEEECCEEecc
Q psy16852        176 AVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVS  254 (579)
Q Consensus       176 G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~i~~  254 (579)
                      |.|+|.+.+..|....+..+.+.+         ..+|.+........+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus        81 G~Y~C~~~~~~g~~~~~~~~~l~V---------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~  151 (209)
T 1nbq_A           81 GTYTCMVSEEGGNSYGEVKVKLIV---------LVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT  151 (209)
T ss_dssp             SEEEEEEEETTSSCEECCEEECCE---------EBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCS
T ss_pred             cEEEEEEecCCCCccceEEEEEEE---------ecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCC
Confidence            999999999866333333333322         133333333334457889999999996 7899999999999988765


Q ss_pred             Cc----------eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        255 KD----------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       255 ~~----------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      ..          .........|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~  206 (209)
T 1nbq_A          152 NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME  206 (209)
T ss_dssp             CSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCE
T ss_pred             ccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEE
Confidence            43          1112245689999999999999999999999987555444443

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.84  E-value=5.6e-20  Score=160.57  Aligned_cols=177  Identities=14%  Similarity=0.142  Sum_probs=125.2

Q ss_pred             cCCCceEEccCCcEEEEEEEEeecC-----CeEEEEECCEEc-cCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEE
Q psy16852        110 KPLKPVIAEAQSPATLKATVTGRPT-----PSICWYRGKEEI-LPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKA  182 (579)
Q Consensus       110 ~~~~~~~~~~g~~~~l~C~~~~~p~-----~~i~W~~~~~~~-~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~  182 (579)
                      .++.++.+.+|+.+.|.|.+.+.|.     +.+.|++.+... ....+..+..+ ...+..+|.|.+++.+|+|.|+|.+
T Consensus         7 ~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   86 (202)
T 3bp6_B            7 APKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLV   86 (202)
T ss_dssp             CSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEE
Confidence            3455678899999999999988775     799999944433 22333332211 1225679999999999999999999


Q ss_pred             EcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEE-eC
Q psy16852        183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET-KD  261 (579)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~-~~  261 (579)
                      .+..+.......+.+...        ...|.+..    ..+.+|+.+.|.|.+.|.|.+.+.|++++..+....... ..
T Consensus        87 ~~~~~~~~~~~~l~V~~~--------~~~p~~~~----~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~  154 (202)
T 3bp6_B           87 ICGAAWDYKYLTVKVKAS--------YMRIDTRI----LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEG  154 (202)
T ss_dssp             EETTEEEEEEEEEEEEBC--------CCCEEEEE----EECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEEEEECTTS
T ss_pred             EeCCCcceEEEEEEecCC--------CCcccEEE----EecCCCCeEEEEEEccccCCceEEEEeCCCCccCceeeCCCC
Confidence            999887666666665421        01222211    245689999999999999999999999887553321111 12


Q ss_pred             CeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       262 ~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                      ....+.+..+..+|.|.|+|.|.|..|.....+.+.|
T Consensus       155 ~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v  191 (202)
T 3bp6_B          155 LYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP  191 (202)
T ss_dssp             CEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC
T ss_pred             CEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEe
Confidence            2356778889999999999999999998877766554

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.83  E-value=4.1e-21  Score=164.70  Aligned_cols=151  Identities=17%  Similarity=0.246  Sum_probs=111.1

Q ss_pred             eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcC-CCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852         16 VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIIN-PTKEDIGVYTCKATNIGGVATCSANL   94 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~~~~g~~~~~~~~   94 (579)
                      ..+.+|++++|.|.+.+ +. .|+|+|+|..+....         ..+|.|.+ ++.+|+|.|+|.|.|..|.......+
T Consensus         9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~---------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~   77 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA   77 (186)
T ss_dssp             EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred             EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC---------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence            34578999999999977 44 599999999987642         24799999 99999999999999988875555555


Q ss_pred             EEEecccCCC------------CCceecC----CCc---eEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEE
Q psy16852         95 IVLEKEESGE------------APKFTKP----LKP---VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTME  155 (579)
Q Consensus        95 ~v~~~~~~~~------------~~~~~~~----~~~---~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  155 (579)
                      .|.....+..            ++.+...    ...   ..+.+|+.+.|.|.+   |.+.|.|+|++..+.....    
T Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~----  150 (186)
T 1jbj_A           78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA----  150 (186)
T ss_dssp             CCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC----
T ss_pred             EEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC----
Confidence            5443221110            0000000    001   123489999999987   8899999999998764322    


Q ss_pred             EcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        156 FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                           ....|.|.++..+|+|.|+|.|.|..|..
T Consensus       151 -----~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 -----TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             -----CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             -----CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence                 23469999999999999999999988765

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.83  E-value=8.7e-20  Score=155.07  Aligned_cols=154  Identities=15%  Similarity=0.155  Sum_probs=117.6

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCe-EEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV  183 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  183 (579)
                      .|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+...            ...|.|.+++.+|+|.|+|.+.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~------------~~~L~i~~~~~~d~G~Y~C~~~   74 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------------ASSYFIDAATVNDSGEYRCQTN   74 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS------------CSEEEESSCCGGGCEEEEEECS
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC------------ceEEEEeCCCcccCEEEEEEee
Confidence            45566666667888999999999998887765 8999999877532            2479999999999999999998


Q ss_pred             cCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC-eEEEEECCEEeccCceEEeCC
Q psy16852        184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-EVKWFKNGKEIVSKDIETKDN  262 (579)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~  262 (579)
                      +..+..  ...+.+.           .++..... ....+.+|+.+.|.|.+.+.+++ .+.|+++|..+...     ..
T Consensus        75 n~~~s~--~~~l~V~-----------~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-----~~  135 (175)
T 1fnl_A           75 LSTLSD--PVQLEVH-----------IGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----HH  135 (175)
T ss_dssp             SSCCCC--CEEEEEE-----------CSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----EE
T ss_pred             CCcccc--cEEEEEe-----------CCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-----CC
Confidence            865533  3334433           22223322 33457889999999999887665 99999999987432     23


Q ss_pred             eEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        263 VTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       263 ~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      ...|.|.+++.+|+|.|+|.|.|..+.
T Consensus       136 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~  162 (175)
T 1fnl_A          136 NSDFHIPKATLKDSGSYFCRGLVGSKN  162 (175)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCEEEEcccChhhCeEEEEEEEcCCCC
Confidence            457999999999999999999997654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.83  E-value=2.2e-20  Score=167.86  Aligned_cols=178  Identities=18%  Similarity=0.294  Sum_probs=123.3

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEe---------------cCCCCEEEEE-eCCEEEEEEcCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTEL---------------HATEHYLITT-VESVSTLEIINP   69 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~---------------~~~~~~~~~~-~~~~~~L~i~~~   69 (579)
                      .+...|.++.+.+|++++|.|. .+.+.+.+.|||+  +...               ....++.+.. .....+|+|.++
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA   80 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence            4667789999999999999999 6778889999995  2111               0123444432 224568999999


Q ss_pred             CCCCCEEEEEEEEcCCee-----eEEEEEEEEEecccCCC------CCceecCCCceEEccCCcEEEEEEEEeecCCeEE
Q psy16852         70 TKEDIGVYTCKATNIGGV-----ATCSANLIVLEKEESGE------APKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC  138 (579)
Q Consensus        70 ~~~d~G~Y~C~~~~~~g~-----~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~  138 (579)
                      +.+|+|.|+|.+.+..|.     ......+.|...+....      .+.+...+....+.+|+.++|.|.+.+.|.+.+.
T Consensus        81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~  160 (238)
T 2p1y_A           81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFP  160 (238)
T ss_dssp             CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEE
T ss_pred             CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEE
Confidence            999999999999987542     11234666654321000      0134445666788999999999999988889999


Q ss_pred             EEECCE-----Ecc---------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        139 WYRGKE-----EIL---------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       139 W~~~~~-----~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      ||+++.     .+.         ...++.+..+...+..+|.|.+++.+|+|.|+|.+.|..
T Consensus       161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            999641     110         122333333344556899999999999999999999874

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.83  E-value=3.2e-20  Score=163.99  Aligned_cols=178  Identities=13%  Similarity=0.125  Sum_probs=121.3

Q ss_pred             cccccCceeeeCCCCEEEEEEE-EeeC-CCeeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKV-EGHP-LPTMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINPTKE   72 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~-~~~~-~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~   72 (579)
                      |.. |.++.+.+|++++|.|.+ .+.+ .+.+.|||++  ..+            ....++.........+|.|.+++.+
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   82 (216)
T 2xzc_L            4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTG   82 (216)
T ss_dssp             BBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred             EEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcc
Confidence            444 788999999999999995 4332 4689999954  211            1134666665667789999999999


Q ss_pred             CCEEEEEEEEcCCe--eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECCEEccC
Q psy16852         73 DIGVYTCKATNIGG--VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKEEILP  148 (579)
Q Consensus        73 d~G~Y~C~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~  148 (579)
                      |+|.|+|.+.+..+  .......+.|...   ..+|.+...........|+.++|.|.+.+. |++ .|.|++++..+..
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  159 (216)
T 2xzc_L           83 DEADYYCGTWDSSLNPVFGGGTKLEIKRT---VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG  159 (216)
T ss_dssp             GCEEEEEEEECTTSCEEEBCCEEEEECCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             cCEEEEEEEEeCCCcceECCCEEEEEcCC---CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCC
Confidence            99999999998775  2223456666432   124444432222223468899999999884 443 9999999998764


Q ss_pred             CCCceEEE-cCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852        149 DNGHTMEF-NPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAE  190 (579)
Q Consensus       149 ~~~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (579)
                      ........ ...++    .+.|.|..+..+|+|.|+|.|.|......
T Consensus       160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          160 NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             CeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence            41111100 11112    23799999999999999999999865443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.83  E-value=2e-20  Score=167.48  Aligned_cols=172  Identities=17%  Similarity=0.237  Sum_probs=126.2

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCC-CeeEEEECCEEec---------CCCCE--EEE----------EeCCEEEEEEc
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELH---------ATEHY--LIT----------TVESVSTLEII   67 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~~g~~~~---------~~~~~--~~~----------~~~~~~~L~i~   67 (579)
                      +..|.++.+.+|++++|.|.+.+.+. +.+.|++++....         ....+  +..          .. ....|.|.
T Consensus         4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~L~i~   82 (231)
T 2pet_A            4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD-SQGRLVLA   82 (231)
T ss_dssp             CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEEC-TTCCEEES
T ss_pred             ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccC-CCceEEEc
Confidence            45688899999999999999988874 7999998654311         11111  111          22 22349999


Q ss_pred             CCCCCCCEEEEEEEEcCC-eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcE-EEEEEE-EeecCCeEEEEECCE
Q psy16852         68 NPTKEDIGVYTCKATNIG-GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPA-TLKATV-TGRPTPSICWYRGKE  144 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~i~W~~~~~  144 (579)
                      +++.+|+|.|+|.+.+.. +.....+.+.|...+   ..|.+...+....+.+|+.+ .|.|.+ .+.|.+.+.|++++.
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p---~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~  159 (231)
T 2pet_A           83 EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKP---EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQ  159 (231)
T ss_dssp             SCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCC---CCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred             ccCcccCceEEEEEEecCCCceEEEEEEEEEecC---CCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCc
Confidence            999999999999999886 777778888888654   23555555666667789988 999999 899999999999999


Q ss_pred             EccCCC----CceEEEc---CCCC----eEEEEECcCCCCCCeEEEEEEEcC
Q psy16852        145 EILPDN----GHTMEFN---PTTG----ECVLSISEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       145 ~~~~~~----~~~~~~~---~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~  185 (579)
                      .+....    +..+...   ...+    .+.|.|.....+|.|.|+|.|.|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          160 RLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             ECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             cCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            887654    2222211   1111    156888766666799999999984

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.83  E-value=4.3e-20  Score=167.68  Aligned_cols=176  Identities=19%  Similarity=0.253  Sum_probs=122.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEE---ec-------------CCCCEEEEEe--CCEEEEEEcC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTE---LH-------------ATEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~---~~-------------~~~~~~~~~~--~~~~~L~i~~   68 (579)
                      .+|.++.+.+|++++|.|.+.+.|  .+.+.|||+  +..   +.             ...++.+...  ....+|+|.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (257)
T 1f3r_B            5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNS   84 (257)
T ss_dssp             EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEES
T ss_pred             ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECC
Confidence            456778899999999999998875  578999995  221   10             1345655543  4578999999


Q ss_pred             CCCCCCEEEEEEEEcCCe-------ee--EEEEEEEEEecccC---------CCCCceecCCCceEEccCCcEEEEEEEE
Q psy16852         69 PTKEDIGVYTCKATNIGG-------VA--TCSANLIVLEKEES---------GEAPKFTKPLKPVIAEAQSPATLKATVT  130 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~g-------~~--~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~l~C~~~  130 (579)
                      ++.+|+|.|+|.+.+..|       ..  ...+.|.|...+..         ..++.+...+..+.+.+|+.++|.|.+.
T Consensus        85 v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~  164 (257)
T 1f3r_B           85 LQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGS  164 (257)
T ss_dssp             CCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECS
T ss_pred             CCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEEC
Confidence            999999999999998743       11  13456777643210         0112233345566788999999999998


Q ss_pred             eecCCeEEEEE--CCEEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        131 GRPTPSICWYR--GKEEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       131 ~~p~~~i~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      +.|.+.+.||+  ++..+.          .....++.........+|.|.+++.+|+|.|+|.+.|..
T Consensus       165 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          165 QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            88888999999  444321          000112222222455789999999999999999999864

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.83  E-value=1.1e-19  Score=165.25  Aligned_cols=177  Identities=16%  Similarity=0.226  Sum_probs=123.7

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--EE---e---------cCCCCEEEEEeCCEEEEEEcCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--TE---L---------HATEHYLITTVESVSTLEIINPTKE   72 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~   72 (579)
                      .+..|..+.+.+|++++|.|.+.+.  +.+.+.|||++  ..   +         ....++.........+|.|.+++.+
T Consensus         5 ~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (256)
T 3ux9_B            5 VLTQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSE   84 (256)
T ss_dssp             CCBCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred             eEecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChh
Confidence            3445677999999999999999876  66799999942  11   1         1234666666667789999999999


Q ss_pred             CCEEEEEEEEcCCe---eeEEEEEEEEEecccCCC---------------CCceecCCCceEEccCCcEEEEEEEEeec-
Q psy16852         73 DIGVYTCKATNIGG---VATCSANLIVLEKEESGE---------------APKFTKPLKPVIAEAQSPATLKATVTGRP-  133 (579)
Q Consensus        73 d~G~Y~C~~~~~~g---~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-  133 (579)
                      |+|.|+|.+.+..+   .....+.|.|...+....               .+.+. .+....+.+|+.++|.|.+.+.+ 
T Consensus        85 DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~  163 (256)
T 3ux9_B           85 DEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLV-ESGGGLVQPGGSLRLSCAASGFTF  163 (256)
T ss_dssp             GCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEE-EECCEEECTTCCEEEEEEEESSCG
T ss_pred             hCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEE-cCCCeEEcCCCeEEEEEEEeCCcc
Confidence            99999999998643   222346677765431100               11222 23445688999999999998766 


Q ss_pred             -CCeEEEEECC--EEc------cC-----------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        134 -TPSICWYRGK--EEI------LP-----------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       134 -~~~i~W~~~~--~~~------~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                       .+.+.||++.  ..+      ..           ..++.+..+......+|.|.+++.+|+|.|+|.+.+..
T Consensus       164 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          164 SSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             GGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence             6899999862  211      11           12444444444567789999999999999999999863

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.83  E-value=3.3e-20  Score=161.62  Aligned_cols=174  Identities=12%  Similarity=0.086  Sum_probs=119.5

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHY-LITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      .+-+|.|...|. ..+.+|++++|.|.+.+ +.+.+.|||+|..+...... ..........|.|.+++.+|+|.|+|.+
T Consensus         5 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a   82 (201)
T 1nkr_A            5 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG   82 (201)
T ss_dssp             --CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeE
Confidence            345777877776 77999999999999964 66799999999765321100 0011123478999999999999999999


Q ss_pred             EcCC-----eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEE
Q psy16852         82 TNIG-----GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF  156 (579)
Q Consensus        82 ~~~~-----g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  156 (579)
                      .+..     ...+..+.|.|.+..   .+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++..+..........
T Consensus        83 ~~~~~~~~~~~~s~~~~l~V~~~~---~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~  157 (201)
T 1nkr_A           83 SVTHSPYQVSAPSDPLDIVIIGLY---EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKV  157 (201)
T ss_dssp             EBTTBTTCCCCCCCCEEEEEECSS---CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEE
T ss_pred             ecCCCCccccCCCCCEEEEeeccC---CCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCccccccccc
Confidence            8643     123345667776532   2445544443 36789999999999875 568999999987654321111111


Q ss_pred             cCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        157 NPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                       .......|.|.+++  |+|.|+|.+.+..
T Consensus       158 -~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          158 -NGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             -TTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             -CCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence             11124689999998  9999999998653

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.83  E-value=1.1e-19  Score=164.33  Aligned_cols=179  Identities=14%  Similarity=0.181  Sum_probs=124.5

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEECC--EE---ec---------CCCCEEEEEeCCEEEEEEc
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKDG--TE---LH---------ATEHYLITTVESVSTLEII   67 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~g--~~---~~---------~~~~~~~~~~~~~~~L~i~   67 (579)
                      ..+...|.++.+.+|++++|.|.+.+.+     .+.+.|||++  ..   +.         ...++.........+|+|.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   81 (247)
T 1svz_A            2 ILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS   81 (247)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             CcEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence            3566778999999999999999998877     5789999942  21   11         1356666666677899999


Q ss_pred             CCCCCCCEEEEEEEEcCCeee-EEEEEEEEEecccC-------CCCCceecCCCceEEccCCcEEEEEEEEeec--CCeE
Q psy16852         68 NPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEES-------GEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPSI  137 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i  137 (579)
                      +++.+|+|.|+|.+.+..+.. ...+.|.|...+..       ..++.....+....+.+|+.++|.|.+.+.+  .+.+
T Consensus        82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  161 (247)
T 1svz_A           82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSM  161 (247)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred             CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEE
Confidence            999999999999998875432 23456777543210       0012222333445689999999999998764  5799


Q ss_pred             EEEECC--EEc------cC-----------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852        138 CWYRGK--EEI------LP-----------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       138 ~W~~~~--~~~------~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  185 (579)
                      .||++.  ..+      ..           ..+..+..+...+..+|.|.+++.+|+|.|+|.+.|.
T Consensus       162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            999963  111      00           2233333333445679999999999999999999885

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.83  E-value=2.1e-19  Score=163.50  Aligned_cols=180  Identities=14%  Similarity=0.197  Sum_probs=127.1

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeC------CCeeEEEEC--CEE---ec---------CCCCEEEEEeCCEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHP------LPTMTWQKD--GTE---LH---------ATEHYLITTVESVSTLE   65 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~------~~~v~W~~~--g~~---~~---------~~~~~~~~~~~~~~~L~   65 (579)
                      .+.+...|..+.+.+|++++|.|.+.+.+      .+.+.|||+  |..   +.         ...++.........+|+
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            46677889999999999999999998776      568999995  221   11         13566666556678999


Q ss_pred             EcCCCCCCCEEEEEEEEcCCee-eEEEEEEEEEecccC------------C-CCCceecCCCceEEccCCcEEEEEEEEe
Q psy16852         66 IINPTKEDIGVYTCKATNIGGV-ATCSANLIVLEKEES------------G-EAPKFTKPLKPVIAEAQSPATLKATVTG  131 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~~g~-~~~~~~~~v~~~~~~------------~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~  131 (579)
                      |.+++.+|+|.|+|.+.+..+. ....+.|.|...+..            . .+......+....+.+|+.++|.|.+.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  164 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG  164 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence            9999999999999999886542 223456777654210            0 0111122233457889999999999987


Q ss_pred             ecC--CeEEEEECC--E---Ecc---C-----------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852        132 RPT--PSICWYRGK--E---EIL---P-----------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       132 ~p~--~~i~W~~~~--~---~~~---~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  185 (579)
                      .+.  +.+.||++.  .   .+.   .           ..+..+..+......+|.|.+++.+|+|.|+|.+.|.
T Consensus       165 ~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          165 YSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             SCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            764  799999963  1   111   0           1233344444456789999999999999999999985

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.83  E-value=8e-18  Score=176.78  Aligned_cols=451  Identities=14%  Similarity=0.126  Sum_probs=249.9

Q ss_pred             CCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCC-CCEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852         20 QEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKE-DIGVYTCKATNIGGVATCSANLIVLE   98 (579)
Q Consensus        20 ~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~~~~g~~~~~~~~~v~~   98 (579)
                      .+..+.|.|.+.|.|.+.+.|.++|..+..-.         ...+.|..+... ..+.|.|.+.+..|..... .+.+..
T Consensus        90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~---------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~  159 (731)
T 2v5y_A           90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWN---------RAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLG  159 (731)
T ss_dssp             CSEEEEEEEEETTCCCCSEEEEECCCCCSSCE---------EEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEES
T ss_pred             CcceEEEEEecCCCCccceeEEEeCCcCCcee---------EEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeee
Confidence            45689999999999999999999998764221         145666655333 3588999877777754432 222222


Q ss_pred             cccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEE-EE--ECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852         99 KEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSIC-WY--RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDE  175 (579)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~-W~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (579)
                      . ....+|.+. .+....+.+|+.+.|.|.+.|.|.+.+. |+  +++..+....  ..........++|.|.++...|.
T Consensus       160 ~-~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~  235 (731)
T 2v5y_A          160 H-PCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE--IKVTSSRRFIASFNVVNTTKRDA  235 (731)
T ss_dssp             S-CCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE--EEECCSSEEEEEEEECSCCTTTC
T ss_pred             c-ccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc--eEEeccccceEEEEEcccccccC
Confidence            1 223455665 4567889999999999999999999888 77  5555443221  11111112246899999999999


Q ss_pred             eEEEEEEEcCCce-eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc----CCC--eEEEEEC
Q psy16852        176 AVYSVKAVNTFGR-AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT----PTP--EVKWFKN  248 (579)
Q Consensus       176 G~Y~C~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~--~v~W~~~  248 (579)
                      |.|+|.|.|..|. ......+.+.           .+|.....+... ......+.|.|.....    +..  .+.|...
T Consensus       236 g~Y~c~A~n~~G~~~s~~~~l~V~-----------~~P~~~~~p~~~-~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~  303 (731)
T 2v5y_A          236 GKYRCMIRTEGGVGISNYAELVVK-----------EPPVPIAPPQLA-SVGATYLWIQLNANSINGDGPIVAREVEYCTA  303 (731)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEE-----------CCCCBSSCCEEE-EECSSCEEEECCCSSBSSCSCCCEEEEEEEES
T ss_pred             eEEEEEEECCCCCcceeeEEEEEe-----------cCCCCCCCccee-ccCCceEEEEeCCcccCCCCccEEEEEEEEEC
Confidence            9999999999987 4444555554           222222222222 2245678888875321    112  4566554


Q ss_pred             CEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEE--cCCeeeEEEEEEEEEecc----ceeeeeeeeeeccccCceee
Q psy16852        249 GKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVV--NEAGEARTSGSVTITVAE----AETVMMDVRVESHPTASFQW  322 (579)
Q Consensus       249 ~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~--n~~g~~~~~~~~~v~~~~----~~~~~l~~~~~~~~~~~~~~  322 (579)
                      +....   .........+.|.++...+...|+|.|.  |..|....+..+.+....    ..+..+...........+.|
T Consensus       304 ~~~~~---~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W  380 (731)
T 2v5y_A          304 SGSWN---DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRW  380 (731)
T ss_dssp             SSSCE---EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEE
T ss_pred             CCCce---EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEE
Confidence            21110   1112233578999999999999999999  998876544444444222    33344444444455566666


Q ss_pred             eecCeeEEEeeeC-CCeEEEEECCEEccCCCeEE--EEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852        323 FIHSEPVVVTGKP-TPLVTWSHDGTPMKEGKEVT--IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE  399 (579)
Q Consensus       323 ~~~~~~~~~~g~p-~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  399 (579)
                      ........ .+.. ...+.|...+...  .....  ..........+.|.++.+...+.|+..|.|..|... +..+.+.
T Consensus       381 ~~p~~~~~-~~~~~~y~v~y~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~  456 (731)
T 2v5y_A          381 EPFGYNVT-RCHSYNLTVHYCYQVGGQ--EQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQ  456 (731)
T ss_dssp             ECCCHHHH-CSSSCEEEEEEEEESSSS--EEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEE
T ss_pred             ECCCcccc-cceeeeEEEEEEEccCCC--CccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEE
Confidence            54321000 0000 0134443322100  00000  001112233788999999999999999999999764 5455554


Q ss_pred             ecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCcee
Q psy16852        400 EKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAV  479 (579)
Q Consensus       400 ~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  479 (579)
                      .....+.+|.              ...+.+... .....+.|......-..-..|.+.+           ......+. .
T Consensus       457 T~~~~P~~p~--------------~~~~~~~~~-~~si~l~W~~P~~~~g~i~~Y~V~~-----------~~~~~~~~-~  509 (731)
T 2v5y_A          457 TDEDLPGAVP--------------TESIQGSTF-EEKIFLQWREPTQTYGVITLYEITY-----------KAVSSFDP-E  509 (731)
T ss_dssp             CCCCCCCCCC--------------TTTCEEEEE-TTEEEEECCCCSCCSSCCCEEEEEE-----------EEEEECC---
T ss_pred             ccCCCCCCCC--------------cceEEeeec-CCeEEEEEcCCCCCCCCccceEEEE-----------EECcCCCc-c
Confidence            4321111110              011122221 1123556654211000112222222           11000000 0


Q ss_pred             EEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        480 YSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       480 y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      +  ........+...+....+++.++...-...|+..|.|..|....+. +.+.
T Consensus       510 ~--~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~  560 (731)
T 2v5y_A          510 I--DLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFT  560 (731)
T ss_dssp             ---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EEEE
T ss_pred             c--cccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cEEE
Confidence            0  0000011233345566789999999989999999999999766553 4443

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.83  E-value=1.3e-19  Score=164.21  Aligned_cols=171  Identities=16%  Similarity=0.200  Sum_probs=122.8

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEe-----------------cCCCCEEEEEe--CCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTEL-----------------HATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~-----------------~~~~~~~~~~~--~~~~~L~i   66 (579)
                      +..|.++.+.+|++++|.|.+.+.+  .+.+.|||+  +..+                 ....++.+...  .+..+|+|
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (256)
T 1nqb_A            4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQL   83 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEE
Confidence            4567889999999999999998764  568999994  2221                 01345655543  45689999


Q ss_pred             cCCCCCCCEEEEEEEEcCCee-----eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC-----e
Q psy16852         67 INPTKEDIGVYTCKATNIGGV-----ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-----S  136 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~  136 (579)
                      .+++.+|+|.|+|.+.+..|.     ....+.|.|..      ++.+...+..+.+.+|+.++|.|.+.+.|.+     .
T Consensus        84 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~------~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~  157 (256)
T 1nqb_A           84 SSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS------DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTY  157 (256)
T ss_dssp             CSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC------CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBC
T ss_pred             CcCChhhCEEEEEEEeeccCccceeEEcCceeeeecc------cccEEecCcEEEEecCCcEEEEeEecCcccccccceE
Confidence            999999999999999987552     12235666642      3445555667788999999999999887765     9


Q ss_pred             EEEEE--CCEEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        137 ICWYR--GKEEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       137 i~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      +.||+  ++..+.          .....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus       158 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  219 (256)
T 1nqb_A          158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHV  219 (256)
T ss_dssp             EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            99999  444321          011112222223456789999999999999999998753

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.83  E-value=1.8e-19  Score=161.16  Aligned_cols=143  Identities=22%  Similarity=0.286  Sum_probs=107.3

Q ss_pred             EEEEcccCCCCCEEEEEEEEcCc-eeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCe-EEEEEE-EeeCCCeEEE
Q psy16852        365 KLAISEVFPENAGLYSCTAVNPV-GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPA-TLKATV-TGRPTPSICW  441 (579)
Q Consensus       365 ~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~-~g~p~~~v~W  441 (579)
                      .|.|.++..+|+|.|+|.|.+.. +.....+.|.|...+   ..|.+...+....+.+|+.+ +|.|.+ .|.|.|.+.|
T Consensus        78 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p---~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W  154 (231)
T 2pet_A           78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKP---EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITW  154 (231)
T ss_dssp             CEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCC---CCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEE
T ss_pred             eEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecC---CCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEE
Confidence            49999999999999999999987 788888888888754   34667666666777889988 999999 8999999999


Q ss_pred             eeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe--
Q psy16852        442 YRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN--  519 (579)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n--  519 (579)
                      ++++..+.....        ..............+.|.|++.              +.|.|.....+|+|.|+|.|.|  
T Consensus       155 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~--------------~~L~i~~~~~dd~g~Y~C~a~n~~  212 (231)
T 2pet_A          155 YRNGQRLEVPVE--------MNPEGYMTSRTVREASGLLSLT--------------STLYLRLRKDDRDASFHCAAHYSL  212 (231)
T ss_dssp             EETTEECCCCSS--------CCSSEEEEEEEEECTTSCEEEE--------------EEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             EECCccCccccc--------cccceeecceeEecCCCeEEEE--------------EEEEEecchhhCCceEEEEEEcCC
Confidence            999999866541        0001122233444566777665              3499987777789999999999  


Q ss_pred             ---CCee-EEEEEEEEE
Q psy16852        520 ---VAGS-VTCTATLSL  532 (579)
Q Consensus       520 ---~~g~-~~~~~~l~v  532 (579)
                         ..|. ....+.|.|
T Consensus       213 ~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          213 PEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             GGGCEEEEECCCEECCC
T ss_pred             cccccccccccceEEEE
Confidence               4555 445555544

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.83  E-value=2.8e-20  Score=166.00  Aligned_cols=170  Identities=9%  Similarity=0.028  Sum_probs=123.1

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .+-+|.|...|.. .|.+|++|+|+|.+.+ +...+.|||+|..+..... ..........|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   80 (242)
T 1p6f_A            4 TLPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYR   80 (242)
T ss_dssp             CCCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEe
Confidence            4568889888888 8999999999999864 4458999999987642100 00011245789999999999999999998


Q ss_pred             cCCeee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCC
Q psy16852         83 NIGGVA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT  160 (579)
Q Consensus        83 ~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  160 (579)
                      +..+..  +..+.|.|.+..   ..|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++..+..    ...  ...
T Consensus        81 ~~~~~s~~S~~~~L~V~~~~---~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~w~k~g~~~~~----~~~--~~~  149 (242)
T 1p6f_A           81 VGELWSEPSNLLDLVVTEMY---DTPTLSVHPG-PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRG--YGK  149 (242)
T ss_dssp             ETTEECCCCCCEEEEEECCS---CCCEEEEESC-SEEETTCEEEEEEECTT-SCSEEEEEECSSSCEE----EEE--ECS
T ss_pred             cCCccccCCcceEEEeeccc---CCCceEccCC-CccCCCCcEEEEEecCC-CCCEEEEEECCCccCc----ccc--CCC
Confidence            765432  345667776431   2344444333 45789999999999864 4569999999875532    111  123


Q ss_pred             CeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        161 GECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       161 ~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      ....|.|.+++.+|+|.|+|.+.+..
T Consensus       150 ~~~~l~I~~v~~~d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          150 VQAEFPLGPVTTAHRGTYRCFGSYNN  175 (242)
T ss_dssp             SEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred             ceEEEEeCCCccccCEEEEEEEECCC
Confidence            45789999999999999999998753

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.83  E-value=4e-20  Score=167.49  Aligned_cols=181  Identities=13%  Similarity=0.175  Sum_probs=125.0

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEECCE--E---e---------cCCCCEEEEEeCCEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKDGT--E---L---------HATEHYLITTVESVSTLEI   66 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~g~--~---~---------~~~~~~~~~~~~~~~~L~i   66 (579)
                      .+.+...|..+.+.+|++++|.|.+.+.+     .+.+.|||++.  .   +         ....++......+..+|+|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            34566668899999999999999998876     57899999641  1   1         1134666666667789999


Q ss_pred             cCCCCCCCEEEEEEEEcCCeeeE-EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECC
Q psy16852         67 INPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGK  143 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~  143 (579)
                      .+++.+|+|.|+|.+.+..+... ....+.|....   .+|.+........+.+|+.++|.|.+.+. |.+ .|.|++++
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  190 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDG  190 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC---BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC---cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECC
Confidence            99999999999999988654322 23456664321   23444432222233478999999999885 443 89999999


Q ss_pred             EEccCCCCceEE-EcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        144 EEILPDNGHTME-FNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       144 ~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      ..+......... ....++    .+.|.|.++..+|+|.|+|.|.|.....
T Consensus       191 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          191 SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             EEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             eecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            887543100000 001112    2469999999999999999999976543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.82  E-value=9.5e-20  Score=160.64  Aligned_cols=179  Identities=17%  Similarity=0.175  Sum_probs=124.1

Q ss_pred             eecCCCceEEccCCcEEEEEEEEeecCCeEEEEEC--CEE---ccC-------CCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852        108 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG--KEE---ILP-------DNGHTMEFNPTTGECVLSISEATPQDE  175 (579)
Q Consensus       108 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~---~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (579)
                      +..++ .+.+.+|+.++|.|.+.+.|.+.+.||+.  +..   +..       ....++......+...|.|.+++.+|+
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE   82 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC
Confidence            34444 67889999999999999888999999982  211   100       011122222245668899999999999


Q ss_pred             eEEEEEEEcCCc---eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-CeEEEEECCE
Q psy16852        176 AVYSVKAVNTFG---RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-PEVKWFKNGK  250 (579)
Q Consensus       176 G~Y~C~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~  250 (579)
                      |.|+|.+.+..+   .......+.|...       ...+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++|.
T Consensus        83 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~  155 (213)
T 3mj8_L           83 ADYYCQSWDGTNSAWVFGSGTKVTVLGQ-------PNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGT  155 (213)
T ss_dssp             EEEEEEEEETTTTEEEEBCCEEEEEECS-------CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             EEEEEEeccCCcceeEEcCceEEEEeCC-------CCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCc
Confidence            999999999877   2223344444311       1145666555444445589999999999985 44 3999999999


Q ss_pred             EeccCc-----eE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEE
Q psy16852        251 EIVSKD-----IE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG  294 (579)
Q Consensus       251 ~i~~~~-----~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~  294 (579)
                      .+....     ..   .....+.|.|..+..+|.|.|+|.|.|..+....++
T Consensus       156 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          156 PITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             EECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             ccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            986532     11   111235689999999999999999999987655443

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.82  E-value=5.5e-20  Score=161.72  Aligned_cols=169  Identities=10%  Similarity=0.083  Sum_probs=119.4

Q ss_pred             CCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeE--EEEECcCCCCCCeEEEEE
Q psy16852        104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC--VLSISEATPQDEAVYSVK  181 (579)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~  181 (579)
                      .+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++..+..... ..  .......  .|.|.+++.+|+|.|+|.
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~   82 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RR--LKFWNETDPEFVIDHMDANKAGRYQCQ   82 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EE--CC----CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-cc--CCCCcceeeEEEEcccccccCEEEEEE
Confidence            3556665555 46889999999999876 6789999998765432211 00  0111223  799999999999999999


Q ss_pred             EEcCCceeEEE--EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEE
Q psy16852        182 AVNTFGRAECR--ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIET  259 (579)
Q Consensus       182 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~  259 (579)
                      +.|..+....+  ..+.+..        ...+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+|+|..+... ...
T Consensus        83 a~n~~~~~~~s~~~~l~V~~--------~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~-~~~  152 (218)
T 1uct_A           83 YRIGHYRFRYSDTLELVVTG--------LYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-HQS  152 (218)
T ss_dssp             EEETTTEEEECCCEEEEEEC--------SSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-EEE
T ss_pred             EEcCCCceeecCCEEEEEcC--------cccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-ccC
Confidence            99976644333  3333331        11345555444 346789999999997667777899999999876542 223


Q ss_pred             eCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        260 KDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      ......|.|.+++.+|+|.|+|.|.|..
T Consensus       153 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          153 GEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             CSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            3456789999999999999999999863

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.82  E-value=6.7e-20  Score=159.01  Aligned_cols=170  Identities=12%  Similarity=0.014  Sum_probs=111.2

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      +|.+...+.. .+.+|++++|.|.+.+.|. .+.|+|++..+.....   ..........|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            5 KATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ---NPLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             BCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE---CCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc---cccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            4455554443 6789999999999987655 9999999886643211   011234567899999999999999999998


Q ss_pred             CCceeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE--Ee
Q psy16852        185 TFGRAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE--TK  260 (579)
Q Consensus       185 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~--~~  260 (579)
                      ..+...  ....+.+...        ..+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+++|..+......  ..
T Consensus        80 ~~g~~~~s~~~~l~V~~~--------~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~  149 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTGF--------YNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLT  149 (196)
T ss_dssp             TTEECBCCCCEEEEEECS--------SCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEEC
T ss_pred             CCCcCCcCccEEEEecCC--------CCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccc
Confidence            766433  2344444311        1245554433 24678999999999999888 899999999876432211  11


Q ss_pred             ---CCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        261 ---DNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       261 ---~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                         .....|.|.+++.+|+|.|+|.|.|..+.
T Consensus       150 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          150 PSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             TTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             cCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence               23478999999999999999999997653

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.82  E-value=7.7e-20  Score=165.78  Aligned_cols=178  Identities=15%  Similarity=0.188  Sum_probs=122.4

Q ss_pred             cCCCceEEccCCcEEEEEEEEe---ecCCeEEEEECCEEcc----------------------------CCCCceEEEcC
Q psy16852        110 KPLKPVIAEAQSPATLKATVTG---RPTPSICWYRGKEEIL----------------------------PDNGHTMEFNP  158 (579)
Q Consensus       110 ~~~~~~~~~~g~~~~l~C~~~~---~p~~~i~W~~~~~~~~----------------------------~~~~~~~~~~~  158 (579)
                      .++.++.+.+|+.++|.|.+.+   .|.+.|.|++++....                            .....+.....
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            3445678899999999999987   7789999999864320                            00111111111


Q ss_pred             CCCeEEEEECcCCCCCCeEEEEEEEcCCcee-----EEEEEEEEeeccccCCCCccCCCeE-eccCCceeeCCCCeEEEE
Q psy16852        159 TTGECVLSISEATPQDEAVYSVKAVNTFGRA-----ECRANLVLRKATTIDKPRVLEAPTI-VRPLQALLVPKDSTVTLE  232 (579)
Q Consensus       159 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~  232 (579)
                       .+...|.|.+++.+|+|.|+|.+.+..+..     .....+.|...        ..+|.+ ...+....+.+|+.+.|.
T Consensus        87 -~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~--------~~~~~~~~~~~~~~~v~~g~~v~L~  157 (250)
T 2fbo_J           87 -LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH--------TPSNNVHVSTAEVVQVDEGNDITMT  157 (250)
T ss_dssp             -TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT--------SCCSCCEECCCSEEECCTTCCEEEC
T ss_pred             -CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc--------CCCCeEEEecCceEEecCCCcEEEE
Confidence             234579999999999999999999876643     33455555321        012222 233445667889999999


Q ss_pred             EEEEccCCCeEEEEECCEEeccCc------------------------eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC-
Q psy16852        233 AEYTGTPTPEVKWFKNGKEIVSKD------------------------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA-  287 (579)
Q Consensus       233 C~~~~~p~~~v~W~~~~~~i~~~~------------------------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~-  287 (579)
                      |.+.+.|.+.+.|++++..+....                        .........|.|.++..+|+|.|+|.|.|.. 
T Consensus       158 C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g  237 (250)
T 2fbo_J          158 CPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG  237 (250)
T ss_dssp             CCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSS
T ss_pred             EEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcc
Confidence            999998999999999988765421                        0011122579999999999999999999954 


Q ss_pred             --eeeEEEEEE
Q psy16852        288 --GEARTSGSV  296 (579)
Q Consensus       288 --g~~~~~~~~  296 (579)
                        |....+..|
T Consensus       238 ~~g~~~~~~~l  248 (250)
T 2fbo_J          238 ELDADRSSTIL  248 (250)
T ss_dssp             GGGEEEEEEEE
T ss_pred             ccCccceeEEE
Confidence              444444433

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.82  E-value=3.4e-19  Score=161.65  Aligned_cols=182  Identities=18%  Similarity=0.274  Sum_probs=126.0

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EE-------------ecCCCCEEEE--EeCCEEEEEEcC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TE-------------LHATEHYLIT--TVESVSTLEIIN   68 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~-------------~~~~~~~~~~--~~~~~~~L~i~~   68 (579)
                      +..+...|.++.+.+|++++|.|.+.+.+.+.+.|||..  ..             .....++...  ......+|+|.+
T Consensus         3 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   82 (256)
T 3tf7_C            3 AQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKAS   82 (256)
T ss_dssp             -CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESS
T ss_pred             ccEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECC
Confidence            356777889999999999999999998888899999832  11             1112344442  224578899999


Q ss_pred             CCCCCCEEEEEEEEcCCe----eeEEEEEEEEEecc--------------cCCCCCceecCCCceEEccCCcEEEEEEEE
Q psy16852         69 PTKEDIGVYTCKATNIGG----VATCSANLIVLEKE--------------ESGEAPKFTKPLKPVIAEAQSPATLKATVT  130 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~g----~~~~~~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  130 (579)
                      ++.+|+|.|+|.+.+..+    .....+.|.|....              ....++.+...+....+.+|+.++|.|.+.
T Consensus        83 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  162 (256)
T 3tf7_C           83 VHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQT  162 (256)
T ss_dssp             CCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEEC
T ss_pred             CCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcC
Confidence            999999999999998654    22234566666410              112355666677778888999999999997


Q ss_pred             eecCCeEEEEECCE--E---cc------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        131 GRPTPSICWYRGKE--E---IL------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       131 ~~p~~~i~W~~~~~--~---~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      +. .+.+.||+...  .   +.            ...++... .......+|.|.+++.+|+|.|+|.+.|..|..
T Consensus       163 ~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~  236 (256)
T 3tf7_C          163 NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKAT-RTTQEDFFLTLESASPSQTSLYFCASSDAPGQL  236 (256)
T ss_dssp             SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEE-CCSSSBCEEEESSCCGGGCEEEEEEEEEETTEE
T ss_pred             CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEE-eCCCCeEEEEECCCCHHHCEEEEEEecCCCCcc
Confidence            65 67999998321  1   10            01111111 112345689999999999999999999876643

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.82  E-value=1.5e-20  Score=167.05  Aligned_cols=181  Identities=17%  Similarity=0.222  Sum_probs=122.7

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCC-----CeeEEEECCEEec-------------CCCCEEEEE---eCCEEEEEEcCCCC
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPL-----PTMTWQKDGTELH-------------ATEHYLITT---VESVSTLEIINPTK   71 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~-----~~v~W~~~g~~~~-------------~~~~~~~~~---~~~~~~L~i~~~~~   71 (579)
                      +.++.+.+|++++|.|.+.+.+.     +.+.|++++....             ...+..+..   ..+..+|.|.+++.
T Consensus         2 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   81 (222)
T 4i0k_A            2 EDPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV   81 (222)
T ss_dssp             CCCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG
T ss_pred             CCCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc
Confidence            35678999999999999987653     5899999874320             111221110   01257799999999


Q ss_pred             CCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEE-ccCC
Q psy16852         72 EDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEE-ILPD  149 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~-~~~~  149 (579)
                      +|+|.|+|.+.+. +.....+.+.|...+   ..|.+...+ ...+.+|+.++|.|.+ .+.|.+.+.|++++.. +...
T Consensus        82 ~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~---~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~  156 (222)
T 4i0k_A           82 TDEGSYTCFVSIQ-DFDSAAVSLQVAAPY---SKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGN  156 (222)
T ss_dssp             GGCSCEEEEEEEC-CCCCCCCCCCCCBCC---CCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSE
T ss_pred             ccCEEEEEEEEeC-CCceEEEEEEEEcCC---CCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCC
Confidence            9999999999975 333444555555432   233444333 3356789999999999 7889999999995443 3322


Q ss_pred             CCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        150 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       150 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      ..........+....|.|.++..+|+|.|+|.+.|..|....+..+.|.
T Consensus       157 ~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  205 (222)
T 4i0k_A          157 VTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTIT  205 (222)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             cceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEe
Confidence            2222222333333568899999999999999999999998888887765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.82  E-value=1.2e-19  Score=160.57  Aligned_cols=180  Identities=17%  Similarity=0.223  Sum_probs=119.7

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEec-----------------CCCCEEEEEe--CCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTELH-----------------ATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~L~i   66 (579)
                      +..|.++.+.+|++++|.|.+.+.+  .+.+.|||+  |..+.                 ...++.+...  ....+|.|
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (219)
T 1c1e_H            4 LVQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQI   83 (219)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEE
T ss_pred             EeCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEE
Confidence            3457788999999999999998764  578999997  33221                 1245554433  34679999


Q ss_pred             cCCCCCCCEEEEEEEEcCCe----eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEE
Q psy16852         67 INPTKEDIGVYTCKATNIGG----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWY  140 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~  140 (579)
                      .+++.+|+|.|+|.+.+..+    .....+.+.|...+  ..+|.+........+.+|+.++|.|.+.+ +|.+ .|.|+
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  161 (219)
T 1c1e_H           84 NNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  161 (219)
T ss_dssp             CSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC--CBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CCCCcccCEEEEEEEeccCcccceeecCceEEEEecCC--CCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEE
Confidence            99999999999999998762    12234567775421  12344433222234568999999999988 7888 99999


Q ss_pred             ECCEEccCCCCceEEEcCC--CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852        141 RGKEEILPDNGHTMEFNPT--TGECVLSISEATPQDEAVYSVKAVNTFGRAECRA  193 (579)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  193 (579)
                      +++..+......... ...  ...+.|.|..... |.|.|+|.|.|..+......
T Consensus       162 ~~g~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~  214 (219)
T 1c1e_H          162 SGSLSSGVHTFPAVL-QSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDK  214 (219)
T ss_dssp             GGTBCTTEEECCCEE-SSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEE
T ss_pred             eCCcccceEecCCcc-cCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEE
Confidence            998754211110111 110  0124688854444 56999999999887654433

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.82  E-value=1.4e-19  Score=156.13  Aligned_cols=160  Identities=16%  Similarity=0.144  Sum_probs=113.8

Q ss_pred             ccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEec---CC---------------CCEEEEEeCCEEEEEEcCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELH---AT---------------EHYLITTVESVSTLEIINPT   70 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~---~~---------------~~~~~~~~~~~~~L~i~~~~   70 (579)
                      ...|..+.+.+|++++|.|.+.+ .+.+.|.|+++|..+.   ..               .+.  ... .+.+|+|.+++
T Consensus         2 s~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~--~~~-~~~sL~I~~v~   78 (193)
T 2if7_A            2 SLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL--NFT-QSYSLQLSNLK   78 (193)
T ss_dssp             -CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTE--EEC-TTCCEEECSCC
T ss_pred             CCCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccE--EEC-CCeEEEECCCC
Confidence            34578899999999999999875 3446899999987542   11               122  222 34789999999


Q ss_pred             CCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCC-cEEEEEEEEee-cCCeEEEEECCEEccC
Q psy16852         71 KEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQS-PATLKATVTGR-PTPSICWYRGKEEILP  148 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~i~W~~~~~~~~~  148 (579)
                      .+|+|.|+|.+.+..+.....+.|.|...+.   .|.+....  .....|. .++|.|.+.+. |.+.|.|++++..+..
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~---~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~  153 (193)
T 2if7_A           79 MEDTGSYRAQISTKTSAKLSSYTLRILRQLR---NIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS  153 (193)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEECCCE---EEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES
T ss_pred             cccCceEEEEEEecCCCeEEEEEEEEEccCC---CCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC
Confidence            9999999999999888766677888865321   12333222  1223455 89999999885 4799999999886532


Q ss_pred             CCCceEEEcCCCCeEEEEECcCCCC-CCeEEEEEEEcCCceeE
Q psy16852        149 DNGHTMEFNPTTGECVLSISEATPQ-DEAVYSVKAVNTFGRAE  190 (579)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~~  190 (579)
                      .             ..|.|.....+ |+|.|+|.|.|..|...
T Consensus       154 ~-------------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s  183 (193)
T 2if7_A          154 Q-------------PNLTVSWDPRISSEQDYTCIAENAVSNLS  183 (193)
T ss_dssp             S-------------SEEEEEECTTTCSCCEEEEEEEETTEEEE
T ss_pred             C-------------CeEEEEeccCcCCCCcEEEEEECCCCccc
Confidence            1             13566544444 89999999999988763

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.82  E-value=1.1e-19  Score=160.26  Aligned_cols=174  Identities=13%  Similarity=0.168  Sum_probs=121.5

Q ss_pred             ecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE--Ec----------cCCCCceEEEcCCCCeEEEEECcCCCCCCe
Q psy16852        109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE--EI----------LPDNGHTMEFNPTTGECVLSISEATPQDEA  176 (579)
Q Consensus       109 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  176 (579)
                      ...+..+.+.+|+.+.|.|.+.+.|.+.|.||+++.  .+          ......++......+...|.|.+++.+|+|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   84 (213)
T 3d9a_L            5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (213)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCE
Confidence            334567788999999999999988888999998532  11          111112222222345678999999999999


Q ss_pred             EEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEec
Q psy16852        177 VYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIV  253 (579)
Q Consensus       177 ~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~  253 (579)
                      .|+|.+.+..+.... ...+.+..        ...+|.+...........|+.+.|.|.+.+ .|.+ .+.|+++|..+.
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~--------~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  156 (213)
T 3d9a_L           85 MYFCQQSNSWPYTFGGGTKLEIKR--------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  156 (213)
T ss_dssp             EEEEEECSSSSCEECCCEEEEECC--------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             EEEEeeecCCcceeCCCEEEEEec--------CCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCc
Confidence            999999988664322 22444431        113555554333333447899999999987 6665 899999999987


Q ss_pred             cC-ceEE---------eCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        254 SK-DIET---------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       254 ~~-~~~~---------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                      .. ....         ....+.|.|.++..+|+|.|+|.|.|.....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          157 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            65 1100         0123589999999999999999999987654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.82  E-value=3.8e-20  Score=168.45  Aligned_cols=179  Identities=20%  Similarity=0.299  Sum_probs=110.7

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---ec--C--C-----------CCEEE-EEeCCEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---LH--A--T-----------EHYLI-TTVESVSTL   64 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~~--~--~-----------~~~~~-~~~~~~~~L   64 (579)
                      +|.+...|.++.+.+|++++|.|.+.+.+.+.+.|||.  +..   +.  .  .           ..+.. .......+|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            67888889999999999999999998888889999992  111   10  0  0           11111 111234679


Q ss_pred             EEcCCCCCCCEEEEEEEEcCCe---eeEEEEEEEEEecccCCC-----------CCceecCCCceEEccCCcEEEEEEEE
Q psy16852         65 EIINPTKEDIGVYTCKATNIGG---VATCSANLIVLEKEESGE-----------APKFTKPLKPVIAEAQSPATLKATVT  130 (579)
Q Consensus        65 ~i~~~~~~d~G~Y~C~~~~~~g---~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~l~C~~~  130 (579)
                      +|.+++.+|+|.|+|.+.+..+   .......+.|......+.           .+.+...+..+.+.+|++++|.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            9999999999999999998765   333456677765432111           34566667778899999999999887


Q ss_pred             ee-cCCeEEEEECCE--E---cc---------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        131 GR-PTPSICWYRGKE--E---IL---------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       131 ~~-p~~~i~W~~~~~--~---~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      +. +.+.+.||+...  .   +.         ...++....+.......|.|.+++.+|+|.|+|.+.+
T Consensus       162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            64 778999998431  1   10         0112222211233456799999999999999999985

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.82  E-value=6.4e-20  Score=174.56  Aligned_cols=197  Identities=17%  Similarity=0.169  Sum_probs=145.1

Q ss_pred             CCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCc
Q psy16852         73 DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGH  152 (579)
Q Consensus        73 d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~  152 (579)
                      |.|.|+|.+.+....    ..+      ....+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... 
T Consensus       136 ~~~~~~C~~~~~l~~----l~~------~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~-  204 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAH----MPN------ASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-  204 (347)
T ss_dssp             GGGCCCCSSSSCSSC----CCC------TTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC-
T ss_pred             cccCCCCCCChHHhc----CCc------ccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc-
Confidence            578899987652111    111      112356676667777889999999999999999999999998875432211 


Q ss_pred             eEEEcCCCCeEEEEECcCCCCCCe-EEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEE
Q psy16852        153 TMEFNPTTGECVLSISEATPQDEA-VYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTL  231 (579)
Q Consensus       153 ~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l  231 (579)
                         .......+.|.|.+++.+|+| .|+|.+.|..|.......+.|.           .+|.+    ......+|+.+.|
T Consensus       205 ---~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~-----------~~P~i----~~~~~~~g~~v~l  266 (347)
T 2ifg_A          205 ---KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS-----------FPASV----QLHTAVEMHHWCI  266 (347)
T ss_dssp             ---CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCB-----------EEEEE----EECCCEESSSEEE
T ss_pred             ---cceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEc-----------CCCee----eeccCccCceEEE
Confidence               112345678999999999999 9999999998877555444432           34443    1112346899999


Q ss_pred             EEEEEccCCCeEEEEECCEEeccCceEE---e-------CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        232 EAEYTGTPTPEVKWFKNGKEIVSKDIET---K-------DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       232 ~C~~~~~p~~~v~W~~~~~~i~~~~~~~---~-------~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                      .|.+.|.|.+.+.|+++|..+.......   .       .....|.|.+++.+|+|.|+|.|.|..|....++.+.|
T Consensus       267 ~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  343 (347)
T 2ifg_A          267 PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF  343 (347)
T ss_dssp             EEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECS
T ss_pred             EEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEe
Confidence            9999999999999999999988554211   1       23567999999999999999999999998877766554

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.82  E-value=8.3e-20  Score=155.45  Aligned_cols=164  Identities=14%  Similarity=0.071  Sum_probs=119.1

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCC-eEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEE
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAV  183 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  183 (579)
                      +|.+...+....+.+|+.++|.|.+.+.+.+ .+.|++++..+...            ...|.|.+++.+|+|.|+|.+.
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~   71 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------------NSSLNIVNAKFEDSGEYKCQHQ   71 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC------------SSEEEECSCCGGGCEEEEEECT
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC------------ceEEEEeccceecCEEEEEEcC
Confidence            4556666666788999999999999877764 79999999877532            3479999999999999999998


Q ss_pred             cCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEE-ccCCCeEEEEECCEEeccCceEEeCC
Q psy16852        184 NTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKDIETKDN  262 (579)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~i~~~~~~~~~~  262 (579)
                      +..+...  ..+.+.           .++..... ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+...     ..
T Consensus        72 ~~~~s~~--~~l~V~-----------~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-----~~  132 (176)
T 1f2q_A           72 QVNESEP--VYLEVF-----------SDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-----YE  132 (176)
T ss_dssp             TSSCCCC--EEEEEE-----------CSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-----CC
T ss_pred             Ccccccc--EEEEEe-----------CcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-----cC
Confidence            8665433  333332           22222222 224577999999999995 4566799999999988532     23


Q ss_pred             eEEEEEcccCCCCCeEEEEEEEcCCeee-EEEEEEEEE
Q psy16852        263 VTKLVIKQTTKKTTGKYEIRVVNEAGEA-RTSGSVTIT  299 (579)
Q Consensus       263 ~~~l~i~~~~~~d~G~y~C~a~n~~g~~-~~~~~~~v~  299 (579)
                      ...|.|.++..+|+|.|+|.|.|..+.. ...+.+.|.
T Consensus       133 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  170 (176)
T 1f2q_A          133 NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI  170 (176)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEe
Confidence            4689999999999999999999975442 223444443

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.82  E-value=2.1e-19  Score=162.26  Aligned_cols=182  Identities=18%  Similarity=0.204  Sum_probs=125.6

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE----------------CCEEecCC---CCEEEEE-eCCEEEEEE
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK----------------DGTELHAT---EHYLITT-VESVSTLEI   66 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~----------------~g~~~~~~---~~~~~~~-~~~~~~L~i   66 (579)
                      +.+...|..+.+.+|++++|.|.+.+.+.+.+.|||                ++......   .++.+.. .....+|+|
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I   81 (246)
T 4dzb_B            2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV   81 (246)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred             CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence            356778889999999999999999888888999999                33333222   3454443 345789999


Q ss_pred             cCCCCCCCEEEEEEEEcCCe----eeEEEEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEeecCC--eEEE
Q psy16852         67 INPTKEDIGVYTCKATNIGG----VATCSANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTP--SICW  139 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g----~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W  139 (579)
                      .+++.+|+|.|+|.+.+..+    .....+.+.|........+|.+. ..+....+.+|+.++|.|.+.+.+++  .+.|
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  161 (246)
T 4dzb_B           82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  161 (246)
T ss_dssp             CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence            99999999999999987543    22234567776432222344433 23344445679999999999887764  9999


Q ss_pred             EECCEEccCCCCceEE--EcC---CCCe----EEEEECcCCCCC-CeEEEEEEEcCCce
Q psy16852        140 YRGKEEILPDNGHTME--FNP---TTGE----CVLSISEATPQD-EAVYSVKAVNTFGR  188 (579)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~~~---~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~~~  188 (579)
                      ++++..+.........  ...   .++.    ..|.|.....+| .|.|+|.|.|....
T Consensus       162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            9999887643211000  000   1222    348888888888 99999999987543

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.82  E-value=1.9e-19  Score=137.51  Aligned_cols=97  Identities=31%  Similarity=0.490  Sum_probs=89.9

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +..||.|+..|.++.+.+|++++|.|.+.|.|.+.|+|+|||..+..+.++.+...+...+|.|.+++.+|+|.|+|.|.
T Consensus        10 ~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence            34689999999999999999999999999999999999999999998888888888888999999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEec
Q psy16852         83 NIGGVATCSANLIVLEK   99 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~   99 (579)
                      |..|....++.|.|.++
T Consensus        90 N~~G~~~~~~~l~V~~p  106 (107)
T 3knb_B           90 NAAGEAYAAAAVTVLEP  106 (107)
T ss_dssp             ETTEEEEEEEEEEEEC-
T ss_pred             ECCCEEEEEEEEEEEcC
Confidence            99999999999998753

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.82  E-value=1.8e-19  Score=163.65  Aligned_cols=181  Identities=14%  Similarity=0.203  Sum_probs=127.2

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--EE---e--------------cCCCCEEEEEe--CC
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--TE---L--------------HATEHYLITTV--ES   60 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~~---~--------------~~~~~~~~~~~--~~   60 (579)
                      -.+|.+...+..+.+.+|++|+|.|.+.+.  +.+.+.|||..  ..   +              ....++.+...  ..
T Consensus         4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   83 (256)
T 3juy_B            4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN   83 (256)
T ss_dssp             ---CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred             ccceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence            356778888999999999999999999873  56689999832  11   0              01235655533  34


Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEcC------------CeeeEEEEEEEEEecccC---------CCCCceecCCCceEEcc
Q psy16852         61 VSTLEIINPTKEDIGVYTCKATNI------------GGVATCSANLIVLEKEES---------GEAPKFTKPLKPVIAEA  119 (579)
Q Consensus        61 ~~~L~i~~~~~~d~G~Y~C~~~~~------------~g~~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~  119 (579)
                      ..+|+|.+++.+|+|.|+|.+.+.            .+.......|.|...+..         ..++.+...+....+.+
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP  163 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECT
T ss_pred             EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeC
Confidence            678999999999999999999886            233334556777653211         01345566677888999


Q ss_pred             CCcEEEEEEEEeecC-CeEEEEEC--CEEcc------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        120 QSPATLKATVTGRPT-PSICWYRG--KEEIL------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       120 g~~~~l~C~~~~~p~-~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      |++++|.|.+.+.+. +.+.||+.  +..+.            ...++..  .......+|.|.+++.+|+|.|+|.+.+
T Consensus       164 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  241 (256)
T 3juy_B          164 GERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSG--SGSGTDFTLTITRVEPEDFALYYCQVYG  241 (256)
T ss_dssp             TSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EEETTEEEEEESSCCGGGCSEEEEEECC
T ss_pred             CCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEE--EccCCEEEEEECCCCHhHCEEEEEEEee
Confidence            999999999988776 89999983  22111            1122222  2234567899999999999999999987


Q ss_pred             CC
Q psy16852        185 TF  186 (579)
Q Consensus       185 ~~  186 (579)
                      ..
T Consensus       242 ~~  243 (256)
T 3juy_B          242 AS  243 (256)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.82  E-value=1.2e-19  Score=160.74  Aligned_cols=181  Identities=13%  Similarity=0.070  Sum_probs=126.0

Q ss_pred             CCCceEEccCCcEEEEEEEEeecCC---eEEEEECCEEccCC----------------CCceEEEc---CCCCeEEEEEC
Q psy16852        111 PLKPVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILPD----------------NGHTMEFN---PTTGECVLSIS  168 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~~~~----------------~~~~~~~~---~~~~~~~l~i~  168 (579)
                      .+..+.+.+|++++|.|.+.+.|.+   .|.|+|++..+...                ...+....   ...+.++|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            3456778899999999999887765   58999976433210                00111111   11234679999


Q ss_pred             cCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEEC
Q psy16852        169 EATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKN  248 (579)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~  248 (579)
                      +++.+|+|.|+|.+.+..+............         ..++..........+..|..+.+.|.+.+.|.+.+.|+++
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~  155 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVL---------VPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTE  155 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEE---------BCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEES
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEe---------eeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEEC
Confidence            9999999999999987665443332222211         1222333344555678899999999999999999999999


Q ss_pred             CEEeccCceEEe----CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852        249 GKEIVSKDIETK----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV  300 (579)
Q Consensus       249 ~~~i~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~  300 (579)
                      +..+........    ...+.|.|.++..+|.|.|+|.|.|..|.....+.+.|.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          156 VKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             SCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             CcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            877655432211    2245799999999999999999999999877776666554

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.81  E-value=3e-19  Score=164.41  Aligned_cols=177  Identities=16%  Similarity=0.239  Sum_probs=124.1

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EEe-----------------cCCCCEEEEEe--CCEEEEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TEL-----------------HATEHYLITTV--ESVSTLE   65 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~~-----------------~~~~~~~~~~~--~~~~~L~   65 (579)
                      ++..|.++.+.+|++++|.|.+.+.+  .+.+.|||++  ..+                 ....++.....  ....+|+
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  108 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ  108 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence            45678899999999999999998764  5689999954  111                 01245555543  3468999


Q ss_pred             EcCCCCCCCEEEEEEEEcCCe---e--eEEEEEEEEEecccC---------CCCCceecCCCceEEccCCcEEEEEEEEe
Q psy16852         66 IINPTKEDIGVYTCKATNIGG---V--ATCSANLIVLEKEES---------GEAPKFTKPLKPVIAEAQSPATLKATVTG  131 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~~g---~--~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  131 (579)
                      |.+++.+|+|.|+|.+.+..|   .  ....+.+.|...+..         ..++.+...+..+.+.+|+.++|.|.+.+
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  188 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS  188 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence            999999999999999998765   1  113456777654310         12334555566778999999999999988


Q ss_pred             ecCCeEEEEE--CCEEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        132 RPTPSICWYR--GKEEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       132 ~p~~~i~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      .+ +.+.|||  ++..+.          .....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus       189 ~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  254 (282)
T 1qok_A          189 SV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY  254 (282)
T ss_dssp             CC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence            88 8999999  444321          001112222223456789999999999999999998753

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.81  E-value=2.4e-20  Score=167.15  Aligned_cols=180  Identities=14%  Similarity=0.135  Sum_probs=122.4

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCC-C-eeEEEECC--EEe------------cCCCCEEEEEeCCEEEEEEcCCC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPL-P-TMTWQKDG--TEL------------HATEHYLITTVESVSTLEIINPT   70 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~-~-~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~~~   70 (579)
                      +.+.. |..+.+.+|++++|.|.+.+.+. + .+.|||++  ..+            ....++.........+|+|.+++
T Consensus        21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   99 (234)
T 2j6e_L           21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR   99 (234)
T ss_dssp             CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred             cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence            33444 88899999999999999987543 4 69999963  211            11346666656677899999999


Q ss_pred             CCCCEEEEEEEEcCCee---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC--CeEEEEECCEE
Q psy16852         71 KEDIGVYTCKATNIGGV---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKEE  145 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~  145 (579)
                      .+|+|.|+|.+.+..+.   ....+.+.|...+  ..+|.+..........+|+.++|.|.+.+.++  +.|.|++++..
T Consensus       100 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  177 (234)
T 2j6e_L          100 SEDEADYYCATWDDSLSAVIFGGGTKLTVLGQP--KAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAP  177 (234)
T ss_dssp             STTCSEEEEEEEETTTTEEEECCCBCCCBCCCC--CCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEE
T ss_pred             HHHCEEEEEEEEcCCcceeEecCCEEEEEecCC--CCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEE
Confidence            99999999999988762   2223455553321  12344333222223346889999999987543  49999999998


Q ss_pred             ccCCCCceEEEcCC----CCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        146 ILPDNGHTMEFNPT----TGECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       146 ~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      +.............    ...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus       178 l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  225 (234)
T 2j6e_L          178 VKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  225 (234)
T ss_dssp             CCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred             CCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence            75431100000001    123579999999999999999999987653

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.81  E-value=3e-19  Score=161.87  Aligned_cols=180  Identities=17%  Similarity=0.203  Sum_probs=125.1

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEe-----------------cCCCCEEEEEeC--CEEEE
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTEL-----------------HATEHYLITTVE--SVSTL   64 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~-----------------~~~~~~~~~~~~--~~~~L   64 (579)
                      +++..|.++.+.+|++++|.|.+.+.+  .+.+.|||.  +..+                 ....++.+....  ...+|
T Consensus         3 ~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   82 (253)
T 3uzq_A            3 KLLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYL   82 (253)
T ss_dssp             CCEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             eeEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEE
Confidence            356778899999999999999998743  568999992  2111                 112455555433  36789


Q ss_pred             EEcCCCCCCCEEEEEEEEcCCeeeE-EEEEEEEEecc---------cCCCCCceecCCCceEEccCCcEEEEEEEEeecC
Q psy16852         65 EIINPTKEDIGVYTCKATNIGGVAT-CSANLIVLEKE---------ESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT  134 (579)
Q Consensus        65 ~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~v~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  134 (579)
                      +|.+++.+|+|.|+|.+.+..+... ..+.+.|...+         ....++.+...+....+.+|++++|.|.+.+.+.
T Consensus        83 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  162 (253)
T 3uzq_A           83 HLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVD  162 (253)
T ss_dssp             EECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCE
T ss_pred             EeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccc
Confidence            9999999999999999998655432 35566775420         1112445666677788999999999999988776


Q ss_pred             C----eEEEEECC--EEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        135 P----SICWYRGK--EEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       135 ~----~i~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      +    .+.||++.  ..+.          .....++.........+|.|.+++.+|+|.|+|.+.|..+
T Consensus       163 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~  231 (253)
T 3uzq_A          163 RYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVP  231 (253)
T ss_dssp             ETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             cCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCC
Confidence            5    99999842  1111          0011122222334567899999999999999999988643

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.81  E-value=1.6e-18  Score=157.61  Aligned_cols=181  Identities=16%  Similarity=0.202  Sum_probs=123.5

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee-------------cCCCCEEEEEe--CCEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL-------------HATEHYLITTV--ESVST   63 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~-------------~~~~~~~~~~~--~~~~~   63 (579)
                      ++..+..|.++.+.+|++|+|.|.+.+.  +.+.+.|||..  .   .+             ....++.+...  ....+
T Consensus         8 ~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   87 (257)
T 3gkz_A            8 KEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVY   87 (257)
T ss_dssp             -CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred             ccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEE
Confidence            3444556888999999999999999884  46799999932  1   11             11245555443  34678


Q ss_pred             EEEcCCCCCCCEEEEEEEEcCC----eeeEEEEEEEEEeccc--------CCCCCceecCCCceEEccCCcEEEEEEEEe
Q psy16852         64 LEIINPTKEDIGVYTCKATNIG----GVATCSANLIVLEKEE--------SGEAPKFTKPLKPVIAEAQSPATLKATVTG  131 (579)
Q Consensus        64 L~i~~~~~~d~G~Y~C~~~~~~----g~~~~~~~~~v~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  131 (579)
                      |+|.+++.+|+|.|+|.+.+..    ......+.+.|...+.        ...++.+...+....+.+|+.++|.|.+.+
T Consensus        88 L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  167 (257)
T 3gkz_A           88 LQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASS  167 (257)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESS
T ss_pred             EEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEcc
Confidence            9999999999999999999862    2233345677764310        012345556667788999999999999988


Q ss_pred             ecCC-eEEEEEC--CEEcc---C-------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        132 RPTP-SICWYRG--KEEIL---P-------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       132 ~p~~-~i~W~~~--~~~~~---~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      .+.+ .+.||+.  +..+.   .       ....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus       168 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          168 SVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             CCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            7776 9999983  22111   0       00112222223456789999999999999999998753

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.81  E-value=2.5e-19  Score=158.06  Aligned_cols=173  Identities=17%  Similarity=0.221  Sum_probs=118.2

Q ss_pred             ccccCceeeeCCCCEEEEEEEEee-------CCCeeEEEECCEE------ec-----------CCCCEEEEEe--CCEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGH-------PLPTMTWQKDGTE------LH-----------ATEHYLITTV--ESVST   63 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~-------~~~~v~W~~~g~~------~~-----------~~~~~~~~~~--~~~~~   63 (579)
                      +..|..+.+.+|++++|.|.+.+.       +.+.+.|||++..      +.           ...++.+...  .+..+
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s   83 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS   83 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence            345888999999999999999754       4568999998753      10           1133333221  23468


Q ss_pred             EEEcCCCCCCCEEEEEEEEcCCeeeE----EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee----cCC
Q psy16852         64 LEIINPTKEDIGVYTCKATNIGGVAT----CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR----PTP  135 (579)
Q Consensus        64 L~i~~~~~~d~G~Y~C~~~~~~g~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~  135 (579)
                      |.|.+++.+|+|.|+|.+.+..+...    ..+.|.|...+   ..|.+..+ .  .+.+|+.++|.|.+.+.    |.+
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~p~i~~~-~--~~~~G~~v~L~C~~~~~~~~~p~p  157 (214)
T 2zg1_A           84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI---EKPDIHFL-E--PLESGRPTRLSCSLPGSCEAGPPL  157 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC---CCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCC
T ss_pred             EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC---CCCceecC-c--cccCCCeEEEEEEeccCCCCCCCc
Confidence            99999999999999999998753221    35677776542   23344322 2  25689999999998653    789


Q ss_pred             eEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy16852        136 SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV  196 (579)
Q Consensus       136 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~  196 (579)
                      .+.|++++..+... .       ....+.|.|..+..+|+|.|+|.|.|..+....+..+.
T Consensus       158 ~v~W~~~~~~~~~~-~-------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          158 TFSWTGNALSPLDP-E-------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             EEEEESSTTSSSCS-S-------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             eEEEeCCCCccCCC-C-------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            99999988643211 1       12345799999999999999999999765443344443

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.81  E-value=1.5e-19  Score=155.27  Aligned_cols=162  Identities=12%  Similarity=0.162  Sum_probs=119.2

Q ss_pred             ceEEccCCcEEEEEEEEeecCCeEEEEECCEEccC------------CCCceEEEcC---CCCeEEEEECcCCCCCCeEE
Q psy16852        114 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP------------DNGHTMEFNP---TTGECVLSISEATPQDEAVY  178 (579)
Q Consensus       114 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~------------~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y  178 (579)
                      .+.+.+|+.++|.|.+.+.|.+.+.|++++..+..            ....+.....   ..+..+|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            45678999999999998888899999998753111            0111122111   23456799999999999999


Q ss_pred             EEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE
Q psy16852        179 SVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE  258 (579)
Q Consensus       179 ~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~  258 (579)
                      +|.+.+..+    ...+.+..              +.. +....+.+|+.++|.|.+.+.|.+.+.|++++..+.     
T Consensus        84 ~C~~~~~~~----~~~l~V~~--------------~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-----  139 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFG--------------LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-----  139 (184)
T ss_dssp             EEEETTEEE----EEEEEEEE--------------EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-----
T ss_pred             EEEEEcCCC----cEEEEEEE--------------ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-----
Confidence            999987644    23333331              111 222357889999999999999999999999876542     


Q ss_pred             EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852        259 TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVA  301 (579)
Q Consensus       259 ~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~~  301 (579)
                        .....|.|.++..+|+|.|+|.|.|..+.....+.+.|...
T Consensus       140 --~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~  180 (184)
T 2ny1_B          140 --QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF  180 (184)
T ss_dssp             --EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             --cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEec
Confidence              23357999999999999999999999988877777766533

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.81  E-value=2.1e-19  Score=157.84  Aligned_cols=178  Identities=17%  Similarity=0.214  Sum_probs=119.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEEec----------------CCCCEEEEEe--CCEEEEEEcC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTELH----------------ATEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~~~----------------~~~~~~~~~~--~~~~~L~i~~   68 (579)
                      ..|.++.+.+|++++|.|.+.+.+  .+.+.|||+  |....                ...++.+...  .+..+|+|.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   84 (210)
T 3d9a_H            5 QESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNS   84 (210)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECC
Confidence            457888999999999999998764  368999985  22210                1345555442  3467999999


Q ss_pred             CCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECCEEc
Q psy16852         69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKEEI  146 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~  146 (579)
                      ++.+|+|.|+|.+.+.. .......+.|...+  ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|++++..+
T Consensus        85 v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~  161 (210)
T 3d9a_H           85 VTTEDTATYYCANWDGD-YWGQGTLVTVSAAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  161 (210)
T ss_dssp             CCGGGCEEEEEEETTSS-CBCCCEEEEECCCC--CBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CCcccCEEEEEEEecCc-ccccceEEEeccCC--CCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCccc
Confidence            99999999999998753 12223456665321  223444432222345689999999999887 777 99999988754


Q ss_pred             cCCCCceEEEcC-CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852        147 LPDNGHTMEFNP-TTGECVLSISEATPQDEAVYSVKAVNTFGRAECR  192 (579)
Q Consensus       147 ~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (579)
                      ............ ....+.|.|..+..+| |.|+|.|.|..+.....
T Consensus       162 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          162 GVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             TEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            211111111110 0013568999988877 99999999998865443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.81  E-value=3.2e-19  Score=156.81  Aligned_cols=171  Identities=15%  Similarity=0.163  Sum_probs=118.6

Q ss_pred             CCceEEccCCcEEEEEEEEeecCCeEEEEECC--EEc----------cCCCCceEEEcCCCCeEEEEECcCCCCCCeEEE
Q psy16852        112 LKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EEI----------LPDNGHTMEFNPTTGECVLSISEATPQDEAVYS  179 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  179 (579)
                      +..+.+.+|+.++|.|.+.+.|.+.|.||++.  ..+          ......++......+...|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            56778999999999999988888899999842  211          011112222222345679999999999999999


Q ss_pred             EEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEeccC-
Q psy16852        180 VKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSK-  255 (579)
Q Consensus       180 C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~-  255 (579)
                      |.+.+..+.... ...+.+..        ...+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+++|+.+... 
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~--------~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  158 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKR--------ADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGV  158 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECC--------CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTE
T ss_pred             EEEEcCCCceeCCCEEEEEcC--------CCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCc
Confidence            999987654322 22444431        113455554333333447999999999987 4554 89999999988765 


Q ss_pred             ceE---------EeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        256 DIE---------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       256 ~~~---------~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                      ...         .....+.|.|.++..+|+|.|+|.|.|.....
T Consensus       159 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          159 LDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             eEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            100         01112479999999999999999999987644

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=3.2e-19  Score=153.43  Aligned_cols=167  Identities=12%  Similarity=0.015  Sum_probs=117.5

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      .|.+...+.. .+.+|++++|.|.+.+ +...+.|+|++..+......   .........|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   78 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK---PPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS---SCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc---cCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence            3455554545 6889999999999864 45799999998876421110   01123457899999999999999999988


Q ss_pred             CCceeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCC
Q psy16852        185 TFGRAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN  262 (579)
Q Consensus       185 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~  262 (579)
                      ..+...  ....+.+..        ...+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+|+|..+.. .......
T Consensus        79 ~~~~~~~s~~~~l~V~~--------~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~-~~~~~~~  147 (188)
T 1oll_A           79 GELWSEPSNLLDLVVTE--------MYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV-QRGYGKV  147 (188)
T ss_dssp             TTEECCCCCCEEEEEES--------CSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE-EEEECSS
T ss_pred             CCCCCCCCCceEEEecc--------cCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc-cccCCCc
Confidence            654332  223444431        11345555444 345789999999999765 4569999999876543 1223456


Q ss_pred             eEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        263 VTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       263 ~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      ...|.|.+++.+|+|.|+|.|.|..
T Consensus       148 ~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          148 QAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EEEEEEEECCGGGCEEEEEECEEET
T ss_pred             eeEEEECCCCcCCCcEEEEEEEcCC
Confidence            6889999999999999999998764

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.81  E-value=9e-19  Score=159.00  Aligned_cols=177  Identities=16%  Similarity=0.192  Sum_probs=123.7

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---e--------------cCCCCEEEEEe--CCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---L--------------HATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~--------------~~~~~~~~~~~--~~~~~L~i   66 (579)
                      +..|.++.+.+|++|+|.|.+.+.+  .+.+.|||..  ..   +              ....++.+...  ....+|+|
T Consensus         6 v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   85 (256)
T 3umt_A            6 LQQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLEL   85 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             EEccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEE
Confidence            3456678899999999999998755  5689999832  11   1              01245555543  34678999


Q ss_pred             cCCCCCCCEEEEEEEEcC----CeeeEEEEEEEEEeccc----------CCCCCceecCCCceEEccCCcEEEEEEEEee
Q psy16852         67 INPTKEDIGVYTCKATNI----GGVATCSANLIVLEKEE----------SGEAPKFTKPLKPVIAEAQSPATLKATVTGR  132 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~----~g~~~~~~~~~v~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  132 (579)
                      .+++.+|+|.|+|.+.+.    .+.....+.|.|...+.          ...++.+...+....+.+|+.++|.|.+.+.
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  165 (256)
T 3umt_A           86 RSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQD  165 (256)
T ss_dssp             CSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred             CCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecC
Confidence            999999999999999886    33334456677764211          0124566666777889999999999999888


Q ss_pred             cCCeEEEEECC--EEcc----------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        133 PTPSICWYRGK--EEIL----------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       133 p~~~i~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      +.+.+.||++.  ..+.          .....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus       166 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  231 (256)
T 3umt_A          166 IGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASS  231 (256)
T ss_dssp             CTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSS
T ss_pred             CCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCC
Confidence            88899999842  1111          001112222233456789999999999999999998854

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.81  E-value=2.6e-19  Score=156.23  Aligned_cols=171  Identities=16%  Similarity=0.221  Sum_probs=116.6

Q ss_pred             CceeeeCCCCEEEEEEEEe----eCCCeeEEEECCEEecC------------CCCEEEEEeCCEEEEEEcCCCCCCCEEE
Q psy16852         14 QPVVSHQEQPALFTCKVEG----HPLPTMTWQKDGTELHA------------TEHYLITTVESVSTLEIINPTKEDIGVY   77 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~----~~~~~v~W~~~g~~~~~------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   77 (579)
                      .++.+.+|++++|.|.+.+    .+.+.+.|++++..+..            ..+..+ ...+..+|.|.+++.+|+|.|
T Consensus         2 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y   80 (201)
T 1dr9_A            2 IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTY   80 (201)
T ss_dssp             CEEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE-ccCCCcEEEEecccchhCeEE
Confidence            3578999999999999853    35678999999987621            112222 123446899999999999999


Q ss_pred             EEEEEcCCeee-----EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEE-eecCCeEEEEECCEEccCCCC
Q psy16852         78 TCKATNIGGVA-----TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNG  151 (579)
Q Consensus        78 ~C~~~~~~g~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~  151 (579)
                      +|.+.+..|..     ...+.|.|...+   ..|.+..    .....|+.+.|.|.+. ++|.+.|.|++++..+.... 
T Consensus        81 ~C~~~~~~g~~~~~~~~~~~~l~V~~~~---~~p~~~~----~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~-  152 (201)
T 1dr9_A           81 ECVVLKYEKDAFKREHLAEVTLSVKADF---PTPSISD----FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN-  152 (201)
T ss_dssp             EEEEEECCTTSCEEEEEEEEEEEEECCC---CCCEEEE----EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSE-
T ss_pred             EEEEEcCCCCccccccccEEEEEEcCCC---CCCceEe----ccCCCCCeEEEEEecCCccCCCEEEEEECCEECcccc-
Confidence            99999976533     345566665432   1222221    1124588999999994 88999999999988876432 


Q ss_pred             ceEEEcCCCCeEEE-EECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852        152 HTMEFNPTTGECVL-SISEATPQDEAVYSVKAVNTFGRAECRA  193 (579)
Q Consensus       152 ~~~~~~~~~~~~~l-~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  193 (579)
                      ........++...+ .+..+..+|.|.|+|.|.|..+......
T Consensus       153 ~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~  195 (201)
T 1dr9_A          153 TTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTF  195 (201)
T ss_dssp             EEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEE
T ss_pred             ceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEE
Confidence            23333333233222 3345556899999999999988765443

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.81  E-value=1.8e-19  Score=159.85  Aligned_cols=180  Identities=15%  Similarity=0.170  Sum_probs=121.4

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---ec----------------CCCCEEEEEe--CCEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---LH----------------ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~~----------------~~~~~~~~~~--~~~~~L~   65 (579)
                      ..|.++.+.+|++++|.|.+.+.+  .+.+.|||++  ..   +.                ...++.+...  ....+|+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   84 (222)
T 1q9r_B            5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQ   84 (222)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             ecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEE
Confidence            457788999999999999998754  5689999853  21   10                1245555543  3467999


Q ss_pred             EcCCCCCCCEEEEEEEEcCCe-----eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEE
Q psy16852         66 IINPTKEDIGVYTCKATNIGG-----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SIC  138 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~~g-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~  138 (579)
                      |.+++.+|+|.|+|.+.+..+     .....+.+.|...+  ..+|.+........+.+|+.++|.|.+.+. |.+ .|.
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  162 (222)
T 1q9r_B           85 MNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  162 (222)
T ss_dssp             ECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC--CBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred             ECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC--CCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEE
Confidence            999999999999999988654     22234566665421  223444332222235679999999999886 877 999


Q ss_pred             EEECCEEccCCCCceEEEcC-CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852        139 WYRGKEEILPDNGHTMEFNP-TTGECVLSISEATPQDEAVYSVKAVNTFGRAECRA  193 (579)
Q Consensus       139 W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  193 (579)
                      |++++..+..........+. ....+.|.|.++..+| |.|+|.|.|..+......
T Consensus       163 W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~  217 (222)
T 1q9r_B          163 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  217 (222)
T ss_dssp             EGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence            99988754321000000110 0012468999999999 999999999988655443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.81  E-value=5.9e-20  Score=157.45  Aligned_cols=159  Identities=15%  Similarity=0.119  Sum_probs=115.8

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      +|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++...       .     .....|.|.+++.+|+|.|+|.+.|
T Consensus         8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-------~-----~~~~~L~i~~v~~~D~G~Y~C~a~n   73 (184)
T 2gi7_A            8 KPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-------Y-----QDQAVLFIPAMKRSLAGRYRCSYQN   73 (184)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC-------E-----ESSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc-------c-----CcccEEEECcCChhhCceEEEEEEc
Confidence            4555555544 7889999999999877 77899999987640       0     1234799999999999999999999


Q ss_pred             CCceeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCC
Q psy16852        185 TFGRAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN  262 (579)
Q Consensus       185 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~  262 (579)
                      ..|...  ....+.+..        ...+|.+...+ ...+.+|+.++|.|.+.+. ++.+.|+++|..+.... .....
T Consensus        74 ~~g~~~~s~~~~l~V~~--------~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~-~~~~~  142 (184)
T 2gi7_A           74 GSLWSLPSDQLELVATG--------VFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKN-PERWY  142 (184)
T ss_dssp             TTEEBCCCCCEEEEEES--------SSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCC-CCEEE
T ss_pred             CCCccCCCCCEEEEecC--------cCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCccee-cCCCc
Confidence            776322  223444421        12345555444 3457789999999997654 46999999998775422 12233


Q ss_pred             eEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852        263 VTKLVIKQTTKKTTGKYEIRVVNEAG  288 (579)
Q Consensus       263 ~~~l~i~~~~~~d~G~y~C~a~n~~g  288 (579)
                      ...|.|.+++.+|+|.|+|.|.|..+
T Consensus       143 ~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          143 RASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             eEEEEEccCCccCCeEEEEEEEeCCC
Confidence            46789999999999999999999754

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.80  E-value=5.7e-19  Score=149.45  Aligned_cols=153  Identities=16%  Similarity=0.139  Sum_probs=115.7

Q ss_pred             CceecCCCceEEccCCcEEEEEEEEeec-CCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        106 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      |.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+.....            .+.+.+++.+|+|.|+|.+.+
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~------------~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ------------PSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS------------SEEEEECCGGGCEEEEEEETT
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc------------ceEEEecccccCeEEEEEEeC
Confidence            3444455556788999999999998876 579999999998765422            356778999999999999987


Q ss_pred             CCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCCeEEEEECCEEeccCceEEeCCe
Q psy16852        185 TFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKDIETKDNV  263 (579)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~  263 (579)
                      .....  ...+.+.           .++.+... ....+.+|+.+.|.|.+.+ .|.+.+.|+++|..+..     ....
T Consensus        73 ~~~s~--~~~l~v~-----------~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~-----~~~~  133 (170)
T 3ry4_A           73 TSLSD--PVHLTVL-----------FEWLVLQT-PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF-----SHLD  133 (170)
T ss_dssp             SBCCC--CEEEEEE-----------CCSEEEEC-SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE-----ESSC
T ss_pred             CCceE--eEEEEEE-----------CCceEecC-CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc-----cCCC
Confidence            54433  3334443           23333322 3345788999999999954 56679999999988753     2345


Q ss_pred             EEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        264 TKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       264 ~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      ..|.|.++..+|+|.|+|.|.|..|.
T Consensus       134 ~~L~i~~v~~~d~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A          134 PTFSIPQANHSHSGDYHCTGNIGYTL  159 (170)
T ss_dssp             CEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CeEEEEeccccCCEEEEEEEEeCcCc
Confidence            67999999999999999999999885

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.80  E-value=5.9e-19  Score=161.31  Aligned_cols=180  Identities=13%  Similarity=0.160  Sum_probs=121.7

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEECC--E---Eec---------CCCCEEEEEeCCEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKDG--T---ELH---------ATEHYLITTVESVSTLEI   66 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~L~i   66 (579)
                      .+.+...|..+.+.+|++++|.|.+.+.+     .+.+.|||++  .   .+.         ...++.........+|+|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            35567778899999999999999998776     4789999853  2   111         135666665667789999


Q ss_pred             cCCCCCCCEEEEEEEEcCCee-eEEEEEEEEEecccCC---CCC--------------ceecCCCceEEccCCcEEEEEE
Q psy16852         67 INPTKEDIGVYTCKATNIGGV-ATCSANLIVLEKEESG---EAP--------------KFTKPLKPVIAEAQSPATLKAT  128 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g~-~~~~~~~~v~~~~~~~---~~~--------------~~~~~~~~~~~~~g~~~~l~C~  128 (579)
                      .+++.+|+|.|+|.+.+..+. ....+.|.|...+...   .+|              .....+....+.+|+.++|.|.
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~  174 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV  174 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred             CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence            999999999999999886542 2233566665432100   111              1222344678899999999999


Q ss_pred             EEeecC--CeEEEEECC--EE---cc----------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852        129 VTGRPT--PSICWYRGK--EE---IL----------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       129 ~~~~p~--~~i~W~~~~--~~---~~----------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  185 (579)
                      +.+.+.  +.+.||++.  ..   +.                ...+..+..+......+|.|.+++.+|+|.|+|.+.+.
T Consensus       175 ~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          175 TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            987653  799999852  21   10                11233333332234578999999999999999999864

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.80  E-value=7.9e-20  Score=158.92  Aligned_cols=169  Identities=15%  Similarity=0.112  Sum_probs=114.2

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      +|.+...+. ..+.+|+.++|.|.+.+.|. .+.|+|++..+.........   ......|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQE---LVKKGQFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHH---HHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccccc---CCcccEEEECCCCHHHCeEEEEEEEC
Confidence            455555444 37889999999999987665 79999998766321110000   01234799999999999999999999


Q ss_pred             CC-cee--EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceE---
Q psy16852        185 TF-GRA--ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIE---  258 (579)
Q Consensus       185 ~~-~~~--~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~---  258 (579)
                      .. +..  .....+.|..        ...+|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+......   
T Consensus        80 ~~~g~~~~s~~~~l~V~~--------~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~  149 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTG--------AYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQP  149 (198)
T ss_dssp             TTTEECCCCCCEEEEEEC--------SSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC--
T ss_pred             CCCCcccCCccEEEEEcc--------cccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccc
Confidence            76 522  2334444431        01244444433 2467899999999999887 6799999999877433211   


Q ss_pred             --EeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852        259 --TKDNVTKLVIKQTTKKTTGKYEIRVVNEAG  288 (579)
Q Consensus       259 --~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g  288 (579)
                        .......|.|.+++.+|+|.|+|.|.|..+
T Consensus       150 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          150 HARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             ----CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence              112357899999999999999999999865

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.80  E-value=1.4e-18  Score=157.10  Aligned_cols=181  Identities=14%  Similarity=0.173  Sum_probs=117.0

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCCe-----eEEEECCEEecC--------CCCE-------EEE---EeCCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLPT-----MTWQKDGTELHA--------TEHY-------LIT---TVESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~~-----v~W~~~g~~~~~--------~~~~-------~~~---~~~~~~~L~i~   67 (579)
                      ..|..+.+.+|++++|.|.+.+.|.+.     +.|++++.....        +...       .+.   ...+..+|.|.
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            456778999999999999999887765     999996432110        0000       000   01124569999


Q ss_pred             CCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEEECCEE
Q psy16852         68 NPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEE  145 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~  145 (579)
                      +++.+|+|.|+|.+.+..+.....+.|.|..      +|.+...+. .....|+.+.|.|.+.+ +|.+ .|.|++++..
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~------~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~  160 (248)
T 3pv7_A           88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA------SPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQK  160 (248)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEB------CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSS
T ss_pred             CCCHHHCeEEEEEEEeCCccceeEEEEEEec------CCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCcc
Confidence            9999999999999999888877888888875      333333333 23446788889999988 7888 9999999864


Q ss_pred             ccCCC------C-ceEEEcCCC---CeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        146 ILPDN------G-HTMEFNPTT---GECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       146 ~~~~~------~-~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      +....      . .........   ....|.|.....+|.|.|+|.|.|..+....+..+.+.
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~  223 (248)
T 3pv7_A          161 FPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLT  223 (248)
T ss_dssp             SCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC-
T ss_pred             CCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEE
Confidence            43210      0 011111111   12568899999999999999999998865454444443

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.80  E-value=2.5e-18  Score=150.93  Aligned_cols=171  Identities=16%  Similarity=0.269  Sum_probs=122.2

Q ss_pred             ceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCC-----------------CCceEEEcCCCCeEEEEECcCCCCCCe
Q psy16852        114 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD-----------------NGHTMEFNPTTGECVLSISEATPQDEA  176 (579)
Q Consensus       114 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  176 (579)
                      +..+.+|+.++|.|...+.+.+.+.||+++......                 ...+....   ..++|.|.+++.+|+|
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~i~~v~~~D~G   84 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITMKDMG   84 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC---TTSCEEECSCCGGGCE
T ss_pred             cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe---cCCeEEEccccccCCe
Confidence            356779999999999877788899999875422110                 01112221   1236999999999999


Q ss_pred             EEEEEEEcCC-ceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccC
Q psy16852        177 VYSVKAVNTF-GRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK  255 (579)
Q Consensus       177 ~Y~C~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~  255 (579)
                      .|+|.+.+.. +.......+.|...        ...|.+......  +.+|+.+.|.|.+.+.| +.+.|++++..+...
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~~--------~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~  153 (208)
T 3r4d_A           85 VYTLDMTDENYRRTQATVRFHVHQP--------VTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT  153 (208)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEECC--------CCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC
T ss_pred             EEEEEEEcccCceeEEEEEEEeccC--------CCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC
Confidence            9999999985 44444455555311        123455444333  88899999999998866 799999999998755


Q ss_pred             c-eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        256 D-IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       256 ~-~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      . .........|.|.++..+|+|.|+|.|.|..|... +..++|.
T Consensus       154 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-s~~~~l~  197 (208)
T 3r4d_A          154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR-SNSIKLD  197 (208)
T ss_dssp             SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEE-CCCEEEC
T ss_pred             CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCccc-CCceeee
Confidence            4 34444557899999999999999999999998754 3344443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.79  E-value=3.3e-20  Score=166.13  Aligned_cols=179  Identities=11%  Similarity=0.101  Sum_probs=101.0

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE--Ee------------cCCCCEEEEEeCCEEEEEEcCCCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT--EL------------HATEHYLITTVESVSTLEIINPTK   71 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~--~~------------~~~~~~~~~~~~~~~~L~i~~~~~   71 (579)
                      .+.+...|.++.+.+|++++|.|.+.+.+.+.+.|||++.  .+            ....++.........+|.|.+++.
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            3455666889999999999999999988778899998532  11            012233222233446899999999


Q ss_pred             CCCEEEEEEEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCC--eEEEEECCEEccC
Q psy16852         72 EDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILP  148 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~  148 (579)
                      +|+|.|+|.+.+..+.. .....+.|....   .+|.+...+......+|+.++|.|.+.+.+++  .|.|++++..+..
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  179 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRAD---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  179 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----C
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCC---CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCC
Confidence            99999999998865432 222345554321   23444432222233469999999999886543  7999999887654


Q ss_pred             CCCceEEEc-CCCC----eEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        149 DNGHTMEFN-PTTG----ECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       149 ~~~~~~~~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      ......... ..++    .+.|.|..+..+|+|.|+|.|.|...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          180 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             CEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             CceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            311100000 0111    24788999999999999999998643

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.79  E-value=3.5e-18  Score=151.66  Aligned_cols=177  Identities=16%  Similarity=0.183  Sum_probs=116.8

Q ss_pred             CCCceEEccCCcEEEEEEEEeecC-----CeEEEEECCEEccC---------C----CCceEEEc---CCCCeEEEEECc
Q psy16852        111 PLKPVIAEAQSPATLKATVTGRPT-----PSICWYRGKEEILP---------D----NGHTMEFN---PTTGECVLSISE  169 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~p~-----~~i~W~~~~~~~~~---------~----~~~~~~~~---~~~~~~~l~i~~  169 (579)
                      +...+.+.+|+.+.|.|.+.+.|.     ..+.|++++..+..         .    ...+....   ...+..+|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            445677889999999999877663     48999997633211         0    01112111   123567899999


Q ss_pred             CCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEEC-
Q psy16852        170 ATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKN-  248 (579)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-  248 (579)
                      ++.+|+|.|+|.+.+ .+.......+.|..           ++..........+.+|+.+.|.|.+.|.|.+.+.|+++ 
T Consensus        87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~-----------~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~  154 (222)
T 3sbw_C           87 VKLQDAGVYRCMISY-GGADYKRITVKVNA-----------PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSD  154 (222)
T ss_dssp             CCGGGCEEEEEEEES-SSEEEEEEEEEEEB-----------CCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETT
T ss_pred             cccccCeEEEEEEEe-CCCceeEEEEEEEC-----------CCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECC
Confidence            999999999999999 45555555555541           11111111112467899999999999999999999998 


Q ss_pred             CEEeccCceE--EeCCe---EEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEE
Q psy16852        249 GKEIVSKDIE--TKDNV---TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT  299 (579)
Q Consensus       249 ~~~i~~~~~~--~~~~~---~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~  299 (579)
                      +..+......  .....   ....+..+...|.|.|+|.|.|..|....++.+.|.
T Consensus       155 g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          155 HQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             CCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEec
Confidence            6655433211  11111   122223456789999999999999988777666543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.79  E-value=6.1e-18  Score=144.27  Aligned_cols=161  Identities=14%  Similarity=0.126  Sum_probs=116.1

Q ss_pred             eeeeCCCCEEEEEEEEeeCCC--eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEE
Q psy16852         16 VVSHQEQPALFTCKVEGHPLP--TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSAN   93 (579)
Q Consensus        16 ~~v~~G~~~~l~C~~~~~~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~   93 (579)
                      +.|.+|++++|+|.+ +.|.|  .|+|++.+..+   .+  .........|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~   90 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   90 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence            699999999999999 88877  99999965443   12  223456789999999999999999999999888888899


Q ss_pred             EEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cC----CeEEEEECCEEccCCCCce--EEE----c--CC
Q psy16852         94 LIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PT----PSICWYRGKEEILPDNGHT--MEF----N--PT  159 (579)
Q Consensus        94 ~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~----~~i~W~~~~~~~~~~~~~~--~~~----~--~~  159 (579)
                      |+|+..|      .... .+.  .+.+|+.+ |.|.+.+. |.    +.|.|||++..+.......  ...    .  ..
T Consensus        91 ltV~~~P------~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~  161 (210)
T 1gsm_A           91 LLVYAFP------NQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDE  161 (210)
T ss_dssp             EEEEBCC------SEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCC
T ss_pred             EEEEecC------CCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCc
Confidence            9998643      2221 121  45678888 99999875 53    4899999999985432111  110    0  01


Q ss_pred             CC----eEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852        160 TG----ECVLSISEATPQDEAVYSVKAVNTFGRAEC  191 (579)
Q Consensus       160 ~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (579)
                      ..    .++|.+.....+|.+.|+|+|.+.......
T Consensus       162 ~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~  197 (210)
T 1gsm_A          162 DVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLEL  197 (210)
T ss_dssp             CCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred             ceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCcc
Confidence            11    245666677778889999999887654443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.79  E-value=6.7e-18  Score=149.52  Aligned_cols=180  Identities=13%  Similarity=0.158  Sum_probs=118.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Eec--------------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---ELH--------------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~~--------------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      ..|.++.+.+|++++|.|.+.+.+  .+.+.|||..  .   .+.              ...++.+...  .+..+|+|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (223)
T 1dee_B            5 VESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMN   84 (223)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             EcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEEC
Confidence            456789999999999999998764  3689999843  1   110              1245555543  246899999


Q ss_pred             CCCCCCCEEEEEEEEcCCe------eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEE
Q psy16852         68 NPTKEDIGVYTCKATNIGG------VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICW  139 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W  139 (579)
                      +++.+|+|.|+|.+.+..|      .....+.|.|...+  ..+|.+........+.+|+.++|.|.+.+. |.+ .+.|
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  162 (223)
T 1dee_B           85 SLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS--ASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSW  162 (223)
T ss_dssp             SCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC--CBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCC--CCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEe
Confidence            9999999999999998642      11234567776321  123443321111234689999999999887 666 9999


Q ss_pred             EE-CCEEccCCCCc-eEEEcC-CCCeEEEEECcCCC--CCCeEEEEEEEcCCceeEEE
Q psy16852        140 YR-GKEEILPDNGH-TMEFNP-TTGECVLSISEATP--QDEAVYSVKAVNTFGRAECR  192 (579)
Q Consensus       140 ~~-~~~~~~~~~~~-~~~~~~-~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~~~  192 (579)
                      ++ ++..+...... ....+. ....+.|.|.....  +|.|.|+|.+.|..+.....
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             EETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             EccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence            99 77766430000 000000 00124688888776  88999999999998865543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.79  E-value=1.9e-19  Score=154.36  Aligned_cols=154  Identities=14%  Similarity=0.194  Sum_probs=108.5

Q ss_pred             EccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECc-CCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852        117 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE-ATPQDEAVYSVKAVNTFGRAECRANL  195 (579)
Q Consensus       117 ~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~  195 (579)
                      ..+|+.+.|.|.+.+ +. .|.|+|++..+....           ..+|.|.+ ++.+|+|.|+|.|.|..|.......+
T Consensus        11 ~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~-----------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~   77 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH-----------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA   77 (186)
T ss_dssp             EEETTEEEEECSSCC-CT-TCEEEETTEEECSCC-----------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred             EeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC-----------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence            357999999999876 44 499999999886541           12699999 99999999999999998874444433


Q ss_pred             EEeeccccCC-------CCccCCCeEecc----CCc---eeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeC
Q psy16852        196 VLRKATTIDK-------PRVLEAPTIVRP----LQA---LLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKD  261 (579)
Q Consensus       196 ~v~~~~~~~~-------~~~~~~p~~~~~----~~~---~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~  261 (579)
                      .+........       .....+|.+...    ...   ..+.+|+.+.|.|.+   |.+.+.|+++|..+....    .
T Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~----~  150 (186)
T 1jbj_A           78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN----A  150 (186)
T ss_dssp             CCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSS----C
T ss_pred             EEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccC----C
Confidence            3322111100       000001110000    000   124589999999987   788999999999986433    2


Q ss_pred             CeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        262 NVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       262 ~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                      ....|.|.++..+|+|.|+|.|.|..|..
T Consensus       151 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            44679999999999999999999998865

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.79  E-value=4.3e-18  Score=149.70  Aligned_cols=180  Identities=13%  Similarity=0.182  Sum_probs=121.9

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEEC--CEEc------------cCCCeEEEEECCCC
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD--GTPM------------KEGKEVTIYQDTDG  362 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~  362 (579)
                      .+.+..|..+.|.|.+.                     |.+.+.|+++  +..+            ....++.... ..+
T Consensus         9 ~~~v~~G~~v~L~C~~~---------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~   66 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT---------------------SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-SGN   66 (211)
T ss_dssp             EEEECTTCEEEEEEECC---------------------CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETT
T ss_pred             eEEEcCCCCEEEEEEEC---------------------CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-cCC
Confidence            45677888888888754                     3345566552  1111            1223444433 445


Q ss_pred             eEEEEEcccCCCCCEEEEEEEEcCce--eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeC--CCe
Q psy16852        363 LCKLAISEVFPENAGLYSCTAVNPVG--EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRP--TPS  438 (579)
Q Consensus       363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~  438 (579)
                      .++|.|.+++.+|+|.|+|.|.|..+  .....+.|.|..  ....+|.+...+....+..|+.++|.|.+.|.+  .+.
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~--~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~  144 (211)
T 3tv3_L           67 TASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLG--QPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVT  144 (211)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECC--SCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCE
T ss_pred             EEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeC--CCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeE
Confidence            67899999999999999999999887  344456777763  222467776555444455899999999999864  469


Q ss_pred             EEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEE
Q psy16852        439 ICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       439 v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      +.|+++|..+..+..               .........|.|...              +.|.|.++..+|+|.|+|.|.
T Consensus       145 v~W~k~g~~l~~~~~---------------~~~~~~~~~~~~~~~--------------s~L~i~~~~~~d~g~Y~C~v~  195 (211)
T 3tv3_L          145 VAWKADSSPVKAGVE---------------TTTPSKQSNNKYAAS--------------SYLSLTPEQWKSHRSYSCQVT  195 (211)
T ss_dssp             EEEEETTEEECTTEE---------------ECCCEECTTSSEEEE--------------EEEEECHHHHHHSSCEEEEEE
T ss_pred             EEEEECCeecCCCcc---------------cCCceECCCCCEEEE--------------EEEEEcHHHhCCCCeEEEEEE
Confidence            999999998854211               111112233444322              459999999999999999999


Q ss_pred             eCCeeEEEEEE
Q psy16852        519 NVAGSVTCTAT  529 (579)
Q Consensus       519 n~~g~~~~~~~  529 (579)
                      |..|....++.
T Consensus       196 ~~~~~~~~~~~  206 (211)
T 3tv3_L          196 HEGSTVEKTVA  206 (211)
T ss_dssp             ETTEEEEEEEC
T ss_pred             ECCCCEEeecc
Confidence            99987766554

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.79  E-value=6.2e-18  Score=148.77  Aligned_cols=145  Identities=15%  Similarity=0.160  Sum_probs=97.2

Q ss_pred             CeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEE-EEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEE
Q psy16852        352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAV-AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKAT  430 (579)
Q Consensus       352 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~  430 (579)
                      .++.... ..+.+.|.|.++..+|+|.|+|.|.|..+... ....|.|...  ...+|.+...+.......|+.++|.|.
T Consensus        62 ~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~  138 (212)
T 1q0x_L           62 ARFSGSL-IGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQ--PKSSPTVTLFPPSSEELSTAKATLVCT  138 (212)
T ss_dssp             TTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCS--CCBCCEEEEECCCHHHHTTTEEEEEEE
T ss_pred             ccEEEEe-eCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecC--CCCCCeeEEeCCCHHHccCCcEEEEEE
Confidence            3444333 34556899999999999999999999876432 3345666432  113666665333334457899999999


Q ss_pred             EEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccc
Q psy16852        431 VTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRD  508 (579)
Q Consensus       431 ~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~  508 (579)
                      +.|.+++  .|.|+++|..+..+...               ........|.|..              .+.|.|..+..+
T Consensus       139 ~~g~~p~~~~v~W~k~g~~l~~~~~~---------------~~~~~~~~g~~~~--------------~s~L~i~~~~~~  189 (212)
T 1q0x_L          139 ITDFYPGVVTVDWKVDGTPVTAGMET---------------TQPSKQSNNKYMA--------------SSYLTLTARAWE  189 (212)
T ss_dssp             EEEEBSSCCEEEEEETTEEECTTEEE---------------CCCEECTTSCEEE--------------EEEEEEEHHHHT
T ss_pred             EEEEeCCCeEEEEEECCEeCCCCeec---------------CCceeCCCCCEEE--------------EEEEEEcHHHcc
Confidence            9986544  89999999988543110               1111122333432              245999999999


Q ss_pred             cceeEEEEEEeCCeeEEEEE
Q psy16852        509 QIGDVTCRAENVAGSVTCTA  528 (579)
Q Consensus       509 d~G~Y~C~a~n~~g~~~~~~  528 (579)
                      |+|.|+|.|.|..+....++
T Consensus       190 d~g~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          190 RHSSYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             TCCEEEEEEEETTEEEEEEE
T ss_pred             CCCcEEEEEEeCCcceeeee
Confidence            99999999999877654443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.79  E-value=2.7e-19  Score=159.28  Aligned_cols=179  Identities=18%  Similarity=0.180  Sum_probs=119.0

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC---eeEEEECCEEecC----------------CCCEEE-------EEeCCEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKDGTELHA----------------TEHYLI-------TTVESVSTL   64 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~g~~~~~----------------~~~~~~-------~~~~~~~~L   64 (579)
                      ..|+++.+..|++++|.|.+.+.+.+   .|.|+|++..+..                ..+...       .......+|
T Consensus         6 ~vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL   85 (225)
T 4fmk_A            6 RVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATL   85 (225)
T ss_dssp             ECCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCE
T ss_pred             EeCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEE
Confidence            34677899999999999999876665   4899997643310                011111       011234679


Q ss_pred             EEcCCCCCCCEEEEEEEEcCCeeeEE-EEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEEC
Q psy16852         65 EIINPTKEDIGVYTCKATNIGGVATC-SANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRG  142 (579)
Q Consensus        65 ~i~~~~~~d~G~Y~C~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~  142 (579)
                      .|.+++.+|+|.|+|.+.+..+.... ...+.+..      ++.....+.......++.+.+.|.. .+.|++.+.|+++
T Consensus        86 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~  159 (225)
T 4fmk_A           86 AFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIA------QPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISS  159 (225)
T ss_dssp             EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB------CCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECS
T ss_pred             EEccCCHHHCcceEEEEEeCCCcceeeeeeeeeec------CCceeecccceeecceeeeeeeeeecCCCCCCEEEEEEC
Confidence            99999999999999999887654443 33334432      2233333334445567778887776 5677899999998


Q ss_pred             CEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        143 KEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      +..+....   ......++    .+.|.|.++..+|+|.|+|.|.|..+....+..+.+.
T Consensus       160 ~~~~~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~  216 (225)
T 4fmk_A          160 LGGEAKDT---QEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLS  216 (225)
T ss_dssp             SCCEEEEE---EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             CccccCCc---ceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEE
Confidence            76543211   11111112    2469999999999999999999998877666666554

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.79  E-value=1.7e-18  Score=132.17  Aligned_cols=93  Identities=28%  Similarity=0.517  Sum_probs=81.7

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .||.|...+.+..+.+|+.+.|.|.+.|.|.|+|.|+|+|..|..+.++.+.                            
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~----------------------------   63 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFP----------------------------   63 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECC----------------------------
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEe----------------------------
Confidence            4788888888899999999999999999999999999999999877665542                            


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                             .++..+.|.|.+++.+|+|.|+|.|.|.+|....++.|.|+
T Consensus        64 -------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  104 (107)
T 3knb_B           64 -------ADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL  104 (107)
T ss_dssp             -------EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -------ecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEE
Confidence                   24456679999999999999999999999999999999976

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.79  E-value=6.6e-18  Score=149.19  Aligned_cols=175  Identities=12%  Similarity=0.183  Sum_probs=119.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Eec--------------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---ELH--------------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~~--------------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+|.++.+.+|++++|.|.+.+.+  .+.+.|||..  .   .+.              ...++.+...  .+..+|+|.
T Consensus         5 ~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (220)
T 2fbj_H            5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMS   84 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEEC
T ss_pred             ecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEEC
Confidence            456779999999999999998755  4689999843  1   110              1245555543  356799999


Q ss_pred             CCCCCCCEEEEEEEEcCCee---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC--CeEEEEE
Q psy16852         68 NPTKEDIGVYTCKATNIGGV---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT--PSICWYR  141 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~i~W~~  141 (579)
                      +++.+|+|.|+|.+.+..+.   ....+.|.|...+  ..+|.+.... ...+.+|+.++|.|.+.+. |.  +.|.|++
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           85 KVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAES--ARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             SCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSC--CBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             CCChhhCEEEEEEEeccccccceecCCEEEEecCCC--CCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence            99999999999999986542   2234567776432  1234443322 3335689999999999887 66  6999999


Q ss_pred             CCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852        142 GKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAE  190 (579)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (579)
                      ++..+..... ..... .++    .+.|.|......|.|.|+|.+.|..+...
T Consensus       162 ~~~~~~~~~~-~~~~~-~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          162 SGKDITTVNF-PPALA-SGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSSCEEEEC-CCEEC-SSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCEecceEec-CceEC-CCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            8865411000 00011 112    13589999999999999999999887643

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.79  E-value=3.4e-19  Score=155.86  Aligned_cols=177  Identities=16%  Similarity=0.183  Sum_probs=112.4

Q ss_pred             ccccccCcee-eeCCCCEEEEEEEEeeC---C-CeeEEEECCEEecCCCCE-EEEEeC----CEEEEEEcCCCCCCCEEE
Q psy16852          8 RFIEKIQPVV-SHQEQPALFTCKVEGHP---L-PTMTWQKDGTELHATEHY-LITTVE----SVSTLEIINPTKEDIGVY   77 (579)
Q Consensus         8 ~~~~~p~~~~-v~~G~~~~l~C~~~~~~---~-~~v~W~~~g~~~~~~~~~-~~~~~~----~~~~L~i~~~~~~d~G~Y   77 (579)
                      .++.+|.... +.+|++++|.|.+.+.+   . ..|.|+|++..+...... ......    ....|.|.+++.+|+|.|
T Consensus         4 v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y   83 (207)
T 2vol_A            4 VFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEF   83 (207)
T ss_dssp             EEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCE
T ss_pred             EEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEE
Confidence            3444555554 89999999999999884   2 489999999776432100 000111    135799999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCCCceEE
Q psy16852         78 TCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHTME  155 (579)
Q Consensus        78 ~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~  155 (579)
                      +|.|.|..+.......+.+  ......+|.+...+......+|+.++|.|.+.|+ |+ +.|.|++++..+.........
T Consensus        84 ~C~a~~~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  161 (207)
T 2vol_A           84 KCRVNSAAFPAPIEKTISK--TKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPI  161 (207)
T ss_dssp             EEEEECTTCSSCEEEEECC--CCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCE
T ss_pred             EEEEEccCCCCceEEEecc--CCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCce
Confidence            9999998775322222221  0011234444332222222359999999999885 44 499999999987432211111


Q ss_pred             EcCCCCe----EEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        156 FNPTTGE----CVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       156 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      .. .++.    ..|.|.....+|.|.|+|.|.|...
T Consensus       162 ~~-~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          162 MD-TDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EC-TTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             EC-CCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            11 1221    3466766666789999999999864

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.78  E-value=1.5e-18  Score=153.70  Aligned_cols=177  Identities=16%  Similarity=0.203  Sum_probs=120.0

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---ec----------------CCCCEEEEEe--CCEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---LH----------------ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~~----------------~~~~~~~~~~--~~~~~L~   65 (579)
                      ..|.++.+.+|++++|.|.+.+.+  .+.+.|||++  ..   +.                ...++.+...  .+..+|+
T Consensus         5 ~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   84 (220)
T 1pz5_B            5 EESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQ   84 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             eccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEE
Confidence            457889999999999999998765  5789999953  11   10                0245555443  3467999


Q ss_pred             EcCCCCCCCEEEEEEEEcCCeee-E--EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEE
Q psy16852         66 IINPTKEDIGVYTCKATNIGGVA-T--CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWY  140 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~~g~~-~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~  140 (579)
                      |.+++.+|+|.|+|.+.+..+.. .  ..+.+.|...+  ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|+
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  162 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT--TTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN  162 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--CBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEG
T ss_pred             EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC--CCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEe
Confidence            99999999999999999875321 1  34566665321  223444332222335689999999999887 888 99999


Q ss_pred             ECCEEcc--CCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852        141 RGKEEIL--PDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR  192 (579)
Q Consensus       141 ~~~~~~~--~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (579)
                      +++....  .....  ... .....+.|.|..+..+| |.|+|.|.|..+....+
T Consensus       163 ~~~~~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  214 (220)
T 1pz5_B          163 YGALSSGVRTVSSV--LQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLI  214 (220)
T ss_dssp             GGTCCTTEEECCCE--EETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCCcccceEEcCCc--ccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeee
Confidence            9876310  00000  000 00013578999988877 99999999998865443

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.78  E-value=5.6e-18  Score=153.00  Aligned_cols=159  Identities=13%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             CeEEEEEC-CCCeEEEEEcccCCCCCEEEEEEEEcCcee--EEEEEEEEEEeccc---------CCCCCeeecCCCceee
Q psy16852        352 KEVTIYQD-TDGLCKLAISEVFPENAGLYSCTAVNPVGE--AVAAATLAVEEKEE---------SGEAPKFTKPLKPVIA  419 (579)
Q Consensus       352 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~~~~---------~~~~p~~~~~~~~~~~  419 (579)
                      .++.+..+ ..+..+|.|.++..+|+|.|+|.|.|..+.  ......|.|...+.         ...++.+...+....+
T Consensus        68 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  147 (247)
T 2ghw_B           68 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSL  147 (247)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEE
T ss_pred             CcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEe
Confidence            45555443 345678999999999999999999997432  22345677764311         1124556556667789


Q ss_pred             ecCCCeEEEEEEEeeCCCeEEEee--CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        420 EAQSPATLKATVTGRPTPSICWYR--GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~p~~~v~W~~--~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      .+|+.++|.|.+.+.|.+.+.|+|  ++..+.     .+..  ....       ......++         +.+..++..
T Consensus       148 ~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~-----~~~~--~~~~-------~~~~~~~r---------~~~~~~~~~  204 (247)
T 2ghw_B          148 SPGERATLSCRASQSVRSNLAWYQQKPGQAPR-----PLIY--DAST-------RATGIPDR---------FSGSGSGTD  204 (247)
T ss_dssp             CTTSCEEEEEEESSCCTTCEEEEEECTTSCCE-----EEEE--TTTE-------ECTTCCTT---------EEEECSSSE
T ss_pred             cCCCcEEEEEEeCCCccceEEEEEECCCCCcE-----EEEE--Eecc-------CCCccCCC---------EEEecCCCe
Confidence            999999999999999999999999  443220     0000  0000       00000111         222334556


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEEe
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLL  533 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~  533 (579)
                      +.|+|.+++.+|+|.|+|.|.|..+.. ...+.|.|.
T Consensus       205 ~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          205 FTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            779999999999999999999864432 234456654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.78  E-value=2.1e-18  Score=130.04  Aligned_cols=94  Identities=22%  Similarity=0.436  Sum_probs=85.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC--CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT--EHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      .+||+|...|.++.+.+|+.+.|.|.+.|.|.|.++|+|||..+...  .++.+...++..+|.|.+++.+|+|.|+|.|
T Consensus         3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence            57899999999999999999999999999999999999999998754  3677777777889999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEE
Q psy16852         82 TNIGGVATCSANLIVL   97 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~   97 (579)
                      .|..|....++.|.|.
T Consensus        83 ~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           83 GNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEEE
Confidence            9999999888888885

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.78  E-value=2.2e-18  Score=152.87  Aligned_cols=174  Identities=13%  Similarity=0.219  Sum_probs=117.8

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---e--------------cCCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---L--------------HATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~--------------~~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|||+.  ..   +              ....++.+...  .+..+|+|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (225)
T 1op3_H            5 VESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMH   84 (225)
T ss_dssp             EEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEEC
Confidence            457778999999999999998765  5689999853  21   1              01245655543  356899999


Q ss_pred             CCCCCCCEEEEEEEEcCCe-----e---eEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cCC-e
Q psy16852         68 NPTKEDIGVYTCKATNIGG-----V---ATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PTP-S  136 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g-----~---~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~~-~  136 (579)
                      +++.+|+|.|+|.+.+..|     .   ....+.|.|...+  ..+|.+.. .+.. .+.+|+.++|.|.+.+. |.+ .
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~  161 (225)
T 1op3_H           85 KMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS--TKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVT  161 (225)
T ss_dssp             SCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS--CBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCE
T ss_pred             CCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCC--CcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeE
Confidence            9999999999999998754     2   1234567776421  12343332 2222 24679999999999886 665 9


Q ss_pred             EEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852        137 ICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAE  190 (579)
Q Consensus       137 i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (579)
                      |.|++++..+........ .. .++    .+.|.|..+..+| |.|+|.|.|..+...
T Consensus       162 v~W~~~~~~~~~~~~~~~-~~-~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          162 VSWNSGALTSGVHTFPAV-LQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             EECCTTSCCTTCEECCCE-EC-TTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             EEEecCCCcCCeEecCce-eC-CCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            999998865321100001 11 112    2468999998888 999999999766443

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.78  E-value=2e-18  Score=152.75  Aligned_cols=178  Identities=19%  Similarity=0.213  Sum_probs=117.7

Q ss_pred             eecCCCceEEccCCcEEEEEEEEee-cCCeEEEEECC---EE-------------ccCCCCceEEEcCCCCeEEEEECcC
Q psy16852        108 FTKPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGK---EE-------------ILPDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       108 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~---~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +...+ .+.+.+|+.++|.|.+.+. |.+.+.||+..   ..             .......++......+..+|.|.++
T Consensus         4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (218)
T 3s96_B            4 LTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNI   82 (218)
T ss_dssp             EECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSC
T ss_pred             EEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccC
Confidence            44445 7788999999999999988 88999999832   10             0011111222222445678999999


Q ss_pred             CCCCCeEEEEEEEcCCc---eeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eE
Q psy16852        171 TPQDEAVYSVKAVNTFG---RAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EV  243 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~---~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v  243 (579)
                      +.+|+|.|+|.+.+..+   ...  ....+.|...       ...+|.+...+.......|+.++|.|.+.+ .|.+ .+
T Consensus        83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v  155 (218)
T 3s96_B           83 QPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQ-------PKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTV  155 (218)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESC-------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEE
T ss_pred             CcccCEEEEEEEecCCCCceeEEEcCcEEEEEecC-------CCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEE
Confidence            99999999999988765   112  2234444311       113455554333334456789999999998 5766 89


Q ss_pred             EEEECCEEeccCc-----e---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852        244 KWFKNGKEIVSKD-----I---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS  293 (579)
Q Consensus       244 ~W~~~~~~i~~~~-----~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~  293 (579)
                      .|+++|..+....     .   ......+.|.|.....+|.|.|+|.|.|..+....+
T Consensus       156 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          156 AWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             EEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             EEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            9999999886532     0   001112458888888889999999999998765543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.78  E-value=1e-19  Score=158.30  Aligned_cols=151  Identities=18%  Similarity=0.272  Sum_probs=104.0

Q ss_pred             eeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         18 SHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        18 v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      +.+|++++|.|.+   |.+.|.|+|+|..+...       .....+|.|.+++.+|+|.|+|.+.+..+   ..+.+.+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~   81 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYR   81 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEE
Confidence            4689999999998   67799999999987532       12346799999999999999999754322   12344443


Q ss_pred             ec------c------------------c-CCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCC-C
Q psy16852         98 EK------E------------------E-SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-G  151 (579)
Q Consensus        98 ~~------~------------------~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~  151 (579)
                      ..      .                  . ...++.+...+ .....+|+.++|.|.  +.|.+.|.|++++..+.... .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~  158 (204)
T 1sy6_A           82 MGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDD  158 (204)
T ss_dssp             C------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTC
T ss_pred             EeccccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCC
Confidence            00      0                  0 00011222112 222238999999999  78889999999999876542 2


Q ss_pred             ceEEEcCCCCeEEEEECcC-CCCCCeEEEEEEEcCCce
Q psy16852        152 HTMEFNPTTGECVLSISEA-TPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       152 ~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~  188 (579)
                      ..+...    ...|.|.++ +.+|+|.|+|.|.|..|.
T Consensus       159 ~~~~~~----~~~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          159 KNIGSD----EDHLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             TTEEEE----TTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             ceEecC----CCEEEEeeCCccccCEEEEEEeccCCCC
Confidence            222211    247999999 999999999999999885

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.78  E-value=2.9e-18  Score=152.27  Aligned_cols=182  Identities=14%  Similarity=0.139  Sum_probs=116.8

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---e---c-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---L---H-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~---~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      ..|.++.+.+|++++|.|.+.+.+  .+.+.|||++  ..   +   .           ...++.+...  .+..+|+|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (227)
T 1mju_H            5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (227)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence            457788999999999999998765  5689999953  21   1   1           1245555443  357899999


Q ss_pred             CCCCCCCEEEEEEEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECCE
Q psy16852         68 NPTKEDIGVYTCKATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKE  144 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~  144 (579)
                      +++.+|+|.|+|.+.+..+.. ...+.|.|...+  ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|++++.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  162 (227)
T 1mju_H           85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK--TTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL  162 (227)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSC--CBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCC--CCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence            999999999999999864322 234567775421  123443322222345679999999999886 666 999999887


Q ss_pred             EccCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852        145 EILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL  195 (579)
Q Consensus       145 ~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  195 (579)
                      .+........... .....+.|.|..+..+| |.|+|.|.|..+.......+
T Consensus       163 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~  213 (227)
T 1mju_H          163 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI  213 (227)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             cCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEe
Confidence            5421100011111 00113579999999888 99999999977665444433

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.78  E-value=1e-18  Score=154.14  Aligned_cols=181  Identities=23%  Similarity=0.336  Sum_probs=132.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC--CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT--EHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      .+||.| ..|.++.+.+|+.++|.|.+.|.|.+.+.|+|+|..+...  .++.+........|.|.+++.+|+|.|+|.|
T Consensus        17 ~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           17 MYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             CEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             ecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            357888 5788899999999999999999999999999999998765  4666666677899999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe----ecCC--eEEEEECCEEccCCCCceEE
Q psy16852         82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG----RPTP--SICWYRGKEEILPDNGHTME  155 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----~p~~--~i~W~~~~~~~~~~~~~~~~  155 (579)
                      .|..|.....+.+.|...|.   +|....     ....+..+.|.|....    .|..  .+.|.+++...    .....
T Consensus        96 ~n~~g~~~~~~~l~v~~~P~---~p~~~~-----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~----w~~~~  163 (215)
T 3mtr_A           96 VNRIGQESLEFILVQADTPS---SPSIDQ-----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV----WHSKW  163 (215)
T ss_dssp             ECSSCEEEEEEEEEECCCCC---CCEEEE-----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCC----CEEEE
T ss_pred             EECCCceEEEEEEEECCCCC---CCcceE-----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCc----ccccc
Confidence            99999888888888875532   222211     1234677899997422    1222  47788766421    11111


Q ss_pred             E--cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852        156 F--NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL  197 (579)
Q Consensus       156 ~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v  197 (579)
                      .  ........|.|.++...+.|.|+|.|.|..|....+..+.+
T Consensus       164 ~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v  207 (215)
T 3mtr_A          164 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF  207 (215)
T ss_dssp             EEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEE
T ss_pred             cccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceee
Confidence            1  00011147999999999999999999999987655544443

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.78  E-value=3e-18  Score=150.97  Aligned_cols=176  Identities=14%  Similarity=0.155  Sum_probs=120.4

Q ss_pred             ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC---EE--cc-------CCCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852        107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK---EE--IL-------PDNGHTMEFNPTTGECVLSISEATPQD  174 (579)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~---~~--~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d  174 (579)
                      .+...+..+.+.+|+.++|.|.+.+.|.+.+.||+..   ..  +.       .....++......+..+|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence            3444466788999999999999988888999999832   10  00       011122222234466799999999999


Q ss_pred             CeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC--CeEEEEECCEE
Q psy16852        175 EAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT--PEVKWFKNGKE  251 (579)
Q Consensus       175 ~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~  251 (579)
                      +|.|+|.+.+..+... ....+.+..        ...+|.+...+.......|+.+.|.|.+.+.++  +.+.|+++|..
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~--------~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~  154 (213)
T 3r06_A           83 IGSYYCQQYYNYPWTFGPGTKLEIKR--------ADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSE  154 (213)
T ss_dssp             CSEEEEEECSSSSCEECCCEEEEECC--------CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             CEEEEEecccCCceEEcCCceEEEec--------cCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcc
Confidence            9999999988754222 223344421        135666655444444557888999999998554  38999999998


Q ss_pred             eccCc-e---------EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        252 IVSKD-I---------ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       252 i~~~~-~---------~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                      +.... .         ......+.|.|.....+|.|.|+|.|.|.....
T Consensus       155 l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          155 KRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             cCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            87532 0         011123468888888889999999999987543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.78  E-value=3.8e-18  Score=153.93  Aligned_cols=181  Identities=17%  Similarity=0.183  Sum_probs=122.1

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--------------CCEEecCC----CCEEEEEe-CCEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--------------DGTELHAT----EHYLITTV-ESVSTLEI   66 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--------------~g~~~~~~----~~~~~~~~-~~~~~L~i   66 (579)
                      .+.++..|..+.+.+|++++|.| ..+.+.+.+.|||              ++......    .++.+... ....+|+|
T Consensus         2 ~~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I   80 (245)
T 4ei6_B            2 GPKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKI   80 (245)
T ss_dssp             CCCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEE
T ss_pred             CcceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEE
Confidence            46788889999999999999999 5566778999999              33222211    45554432 34679999


Q ss_pred             cCCCCCCCEEEEEEEEcC----CeeeEEEEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEeecC-C-eEEE
Q psy16852         67 INPTKEDIGVYTCKATNI----GGVATCSANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPT-P-SICW  139 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~----~g~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~-~-~i~W  139 (579)
                      .+++.+|+|.|+|.+.+.    .........+.|........+|.+. ..+....+.+|+.++|.|.+.+.++ + .+.|
T Consensus        81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W  160 (245)
T 4ei6_B           81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  160 (245)
T ss_dssp             CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence            999999999999999853    2233344567776432222344333 2334444567999999999988544 4 8999


Q ss_pred             EECCEEccCCCCceE---EEcC--CCCe----EEEEECcCCCCC-CeEEEEEEEcCCc
Q psy16852        140 YRGKEEILPDNGHTM---EFNP--TTGE----CVLSISEATPQD-EAVYSVKAVNTFG  187 (579)
Q Consensus       140 ~~~~~~~~~~~~~~~---~~~~--~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~~  187 (579)
                      ++++..+........   ....  .++.    ..|.|.....+| .|.|+|.+.|...
T Consensus       161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence            999988764321100   0000  1121    358888888888 9999999998654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.78  E-value=6.5e-18  Score=151.64  Aligned_cols=184  Identities=14%  Similarity=0.174  Sum_probs=123.1

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECC-------------E-EccCCCeEEEEECCCC
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDG-------------T-PMKEGKEVTIYQDTDG  362 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~-------------~-~~~~~~~~~~~~~~~~  362 (579)
                      .+.+..|..+.|.|.+...                   |.+.+.|++.+             . ......++... ...+
T Consensus        33 ~~~v~~G~~v~L~C~~~~~-------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~   92 (237)
T 3sob_L           33 SLSASVGDRVTITCRASQD-------------------VSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS-GSGT   92 (237)
T ss_dssp             EEEEETTCCEEEEEEESSC-------------------CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EETT
T ss_pred             eEEEeCCCcEEEEEecCCC-------------------CCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEE-cCCC
Confidence            3557788888888875544                   34455555521             1 11123344443 2345


Q ss_pred             eEEEEEcccCCCCCEEEEEEEEcCceeE-EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEee-C-CCeE
Q psy16852        363 LCKLAISEVFPENAGLYSCTAVNPVGEA-VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-TPSI  439 (579)
Q Consensus       363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~~~v  439 (579)
                      ..+|.|.+++.+|+|.|+|.+.+..+.. .....+.|..   ...+|.+...........|+.++|.|.+.|. | .+.+
T Consensus        93 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~---~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v  169 (237)
T 3sob_L           93 DFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKR---TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKV  169 (237)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC---CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEec---CCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEE
Confidence            6789999999999999999998876532 2344666654   2246777654444445568899999999984 4 4799


Q ss_pred             EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .|+++|..+..+.              +........+.|.|.+.              +.|.|..+..+|+|.|+|.|.|
T Consensus       170 ~W~k~g~~~~~~~--------------~~~~~~~~~~~g~~~~~--------------s~L~i~~~~~~d~g~Y~C~a~n  221 (237)
T 3sob_L          170 QWKVDNALQSGNS--------------QESVTEQDSKDSTYSLS--------------STLTLSKADYEKHKVYACEVTH  221 (237)
T ss_dssp             EEEETTEECCSSE--------------EEEECCCCTTTCCEEEE--------------EEEEEEHHHHTTCCEEEEEEEC
T ss_pred             EEEECCCCCCCce--------------eecccccccCCCcEEEE--------------EEEEEcHHHccCCCcEEEEEee
Confidence            9999999885431              12223344455666544              3499999999999999999999


Q ss_pred             CCeeEEEEEEEE
Q psy16852        520 VAGSVTCTATLS  531 (579)
Q Consensus       520 ~~g~~~~~~~l~  531 (579)
                      .......+..+.
T Consensus       222 ~~~~~~~~~~~~  233 (237)
T 3sob_L          222 QGLSSPVTKSFN  233 (237)
T ss_dssp             TTCSSCEEEEEE
T ss_pred             CCCCCceeeeee
Confidence            987655544443

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.78  E-value=2.6e-18  Score=157.25  Aligned_cols=181  Identities=16%  Similarity=0.179  Sum_probs=121.0

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEE------------ecCC----CCEEEEEe-CCEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTE------------LHAT----EHYLITTV-ESVSTLEI   66 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~------------~~~~----~~~~~~~~-~~~~~L~i   66 (579)
                      .+.++..|..+.+.+|++++|.|.+. .+.+.+.|||  .+..            ....    .++.+... ....+|+|
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            45677788889999999999999986 4667999999  2221            1111    44544432 33688999


Q ss_pred             cCCCCCCCEEEEEEEEcC--CeeeEEEEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEeecCC--eEEEEE
Q psy16852         67 INPTKEDIGVYTCKATNI--GGVATCSANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTP--SICWYR  141 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~--~g~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~  141 (579)
                      .+++.+|+|.|+|.+.+.  .........+.|........+|.+. ..+....+.+|+.++|.|.+.+.+++  .+.|++
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~  184 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  184 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence            999999999999999973  3333445567776533222344433 23444445679999999999886664  999999


Q ss_pred             CCEEccCCCCce---EE--EcCCCC----eEEEEECcCCCCC-CeEEEEEEEcCCc
Q psy16852        142 GKEEILPDNGHT---ME--FNPTTG----ECVLSISEATPQD-EAVYSVKAVNTFG  187 (579)
Q Consensus       142 ~~~~~~~~~~~~---~~--~~~~~~----~~~l~i~~~~~~d-~G~Y~C~~~~~~~  187 (579)
                      ++..+.......   ..  ....++    ...|.|.....+| .|.|+|.+.|...
T Consensus       185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l  240 (268)
T 3pl6_D          185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  240 (268)
T ss_dssp             SSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence            998875431100   00  000111    1457888887777 9999999998754

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.77  E-value=9.7e-18  Score=146.16  Aligned_cols=177  Identities=15%  Similarity=0.215  Sum_probs=115.6

Q ss_pred             EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccC------------CCeEEEEECCCCeEE
Q psy16852        298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE------------GKEVTIYQDTDGLCK  365 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~  365 (579)
                      |.+..|..+.|.|.+....               .+.|.+.+.|++++..+..            ..+....  ..+...
T Consensus         4 v~v~~G~~v~L~C~~~~~~---------------~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~--~~~~~~   66 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSV---------------EELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD--ITNNLS   66 (201)
T ss_dssp             EEEETTSCEEECCSCCCCT---------------THHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE--STTTTE
T ss_pred             EEEEeCCCEEEecccCCCc---------------ccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc--cCCCcE
Confidence            5677888999999764211               2345667888888876521            1112211  122348


Q ss_pred             EEEcccCCCCCEEEEEEEEcCceeE-----EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEE-eeCCCeE
Q psy16852        366 LAISEVFPENAGLYSCTAVNPVGEA-----VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT-GRPTPSI  439 (579)
Q Consensus       366 l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v  439 (579)
                      |.|.+++.+|+|.|+|.|.|..|..     ...+.|.|....   ..|.+...    ....|+.++|.|.+. |.|.|.|
T Consensus        67 L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~---~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i  139 (201)
T 1dr9_A           67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF---PTPSISDF----EIPTSNIRRIICSTSGGFPEPHL  139 (201)
T ss_dssp             EEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCC---CCCEEEEE----ECSSTTEEEEEEEEEEESSCEEE
T ss_pred             EEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCC---CCCceEec----cCCCCCeEEEEEecCCccCCCEE
Confidence            9999999999999999999976533     346666666532   23444321    124588999999995 9999999


Q ss_pred             EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .|+++|..+..... .+..               ..+.|.|.                 ...+..+..+|.|.|+|.|.|
T Consensus       140 ~W~k~g~~l~~~~~-~~~~---------------~~~~~~~~-----------------~~~~~~v~~~d~g~Y~C~a~n  186 (201)
T 1dr9_A          140 SWLENGEELNAINT-TVSQ---------------DPETELYA-----------------VSSKLDFNMTTNHSFMCLIKY  186 (201)
T ss_dssp             EEEESSCEECCSEE-EEEE---------------CTTTCCEE-----------------EEEEEEEETTSCEEEEEEEEE
T ss_pred             EEEECCEECccccc-eEEe---------------cCCCcEEE-----------------EEEEEEEEecCCCEEEEEEec
Confidence            99999988754321 1111               01112221                 123445566899999999999


Q ss_pred             CCeeEEEEEEEE
Q psy16852        520 VAGSVTCTATLS  531 (579)
Q Consensus       520 ~~g~~~~~~~l~  531 (579)
                      ..|.....+.+.
T Consensus       187 ~~~~~s~~~~~~  198 (201)
T 1dr9_A          187 GHLRVNQTFNWN  198 (201)
T ss_dssp             TTCCEEEEEEEC
T ss_pred             CcceeeeEEecc
Confidence            999988776653

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.77  E-value=1.4e-18  Score=159.29  Aligned_cols=179  Identities=12%  Similarity=0.155  Sum_probs=120.4

Q ss_pred             ceecCCCceEEccCCcEEEEEEEE---eecCCeEEEEECCEEccCC------------------CCceEEEcCCCCeEEE
Q psy16852        107 KFTKPLKPVIAEAQSPATLKATVT---GRPTPSICWYRGKEEILPD------------------NGHTMEFNPTTGECVL  165 (579)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~l~C~~~---~~p~~~i~W~~~~~~~~~~------------------~~~~~~~~~~~~~~~l  165 (579)
                      .+...+..+.+.+|+.++|.|.+.   +.+.+.|.|++++......                  .+..+..+...+..+|
T Consensus         7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   86 (268)
T 3mj6_A            7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL   86 (268)
T ss_dssp             -----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred             ccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence            344455667889999999999987   5667899999965432111                  1111111223445789


Q ss_pred             EECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE---EccCCCe
Q psy16852        166 SISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY---TGTPTPE  242 (579)
Q Consensus       166 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~  242 (579)
                      .|.+++.+|+|.|+|.+.+..+.......+.+.+.              ...+....+.+|+.+.|.|.+   .+.|.+.
T Consensus        87 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--------------~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~  152 (268)
T 3mj6_A           87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--------------PEEPRDLRVRVGDTTQMRCSIQSTEEKRVTK  152 (268)
T ss_dssp             EECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--------------CCCCSEEEEETTCCEEECCBCEESSSSCCCE
T ss_pred             EECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--------------ccCCCccccccCCcEEEEEEecCCCCCCccc
Confidence            99999999999999999987655544444444321              012234568899999999998   4568889


Q ss_pred             EEEEEC-CEEecc------------------Cc----eEE----eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEE
Q psy16852        243 VKWFKN-GKEIVS------------------KD----IET----KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS  295 (579)
Q Consensus       243 v~W~~~-~~~i~~------------------~~----~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~  295 (579)
                      +.|+++ +.....                  ..    ...    ......|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus       153 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~  232 (268)
T 3mj6_A          153 VNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV  232 (268)
T ss_dssp             EEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEE
Confidence            999994 221100                  00    000    134568999999999999999999999888777766


Q ss_pred             EEEE
Q psy16852        296 VTIT  299 (579)
Q Consensus       296 ~~v~  299 (579)
                      |.|.
T Consensus       233 l~V~  236 (268)
T 3mj6_A          233 LHVV  236 (268)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6664

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.77  E-value=3.3e-18  Score=128.95  Aligned_cols=95  Identities=21%  Similarity=0.319  Sum_probs=80.6

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .||.|...+.+..+.+|+.+.|.|.+.|.|.|++.|+++|..+....+.++                             
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~-----------------------------   54 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRF-----------------------------   54 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTE-----------------------------
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeecccee-----------------------------
Confidence            478888888889999999999999999999999999999999866543222                             


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                          .+...+..++|.|.+++.+|+|.|+|.|.|.+|....++.|.|+
T Consensus        55 ----~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           55 ----HIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             ----EEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ----eeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence                12234456679999999999999999999999999999999986

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.77  E-value=1.2e-16  Score=136.38  Aligned_cols=244  Identities=20%  Similarity=0.250  Sum_probs=160.7

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEee-C---CCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGH-P---LPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ++.+...|....+..|+.++|+|.+.+. |   ...|+|||||..+....          ..|.|..++..|+|.|+|.+
T Consensus         2 ~~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT----------~tLti~s~t~sdSG~YqCvV   71 (304)
T 3shs_A            2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------ATLTVADATSENAGSYKVTV   71 (304)
T ss_dssp             CEEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEE
T ss_pred             ccEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc----------ceEEeeeccccCCeEEEEEE
Confidence            3455667888999999999999998654 4   23799999998876432          47999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE--Ee-ec-----CCeEEEEECCEEccCCCCce
Q psy16852         82 TNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV--TG-RP-----TPSICWYRGKEEILPDNGHT  153 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~-~p-----~~~i~W~~~~~~~~~~~~~~  153 (579)
                      .+..|....+..+.|......   ......+....+..|..+.|.+.+  .| .|     ..+++||+++..+...    
T Consensus        72 TDa~Gcs~tSs~VtVT~~a~l---~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA----  144 (304)
T 3shs_A           72 QDTDTMTSVESEVFLMEEAEL---IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT----  144 (304)
T ss_dssp             EETTTCCEEECCCEEECBCCE---EEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS----
T ss_pred             EECCCCeeeeeeEEEeccCce---eEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc----
Confidence            998886655555555543211   012223555666778899999987  33 34     4699999999876432    


Q ss_pred             EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEE
Q psy16852        154 MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEA  233 (579)
Q Consensus       154 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C  233 (579)
                               ..|.+......++|.|+|.+.+..+....+....+...         ..+.-..-.....+..|+.+.|.-
T Consensus       145 ---------q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~---------~~~v~~~~~~~~~~~~~~~~~~~~  206 (304)
T 3shs_A          145 ---------QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLA---------TMNVDQDVVESKTVALGNEISLNY  206 (304)
T ss_dssp             ---------SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEEC---------EEEEEECCCSEEEEETTSCEEECC
T ss_pred             ---------cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEE---------ccccchhheEeehhhcCcEEEEEE
Confidence                     24778888889999999999998764333333333211         111111112344577899888877


Q ss_pred             EEE--------ccCCC--eEEEEE--CCEE----eccCc------eEEeCCeEEEEEcccCCCCCeEEEEEEEc
Q psy16852        234 EYT--------GTPTP--EVKWFK--NGKE----IVSKD------IETKDNVTKLVIKQTTKKTTGKYEIRVVN  285 (579)
Q Consensus       234 ~~~--------~~p~~--~v~W~~--~~~~----i~~~~------~~~~~~~~~l~i~~~~~~d~G~y~C~a~n  285 (579)
                      .+.        |-|..  .+.||.  .|+.    +...-      +.. .....|.-.....+|...|.|.++-
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  279 (304)
T 3shs_A          207 VVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSI-TPDGHLFKESATYDDTAKFWCVAKL  279 (304)
T ss_dssp             EEEEECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEE-CTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEeeccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhcccee-CCCcceeecccccccchheeeHHHH
Confidence            654        22332  467875  3321    11111      111 1223566677888999999999853

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.77  E-value=2.5e-18  Score=154.54  Aligned_cols=179  Identities=13%  Similarity=0.191  Sum_probs=121.4

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--------------CCEEec---CCCCEEEEEe-CCEEEEEEc
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--------------DGTELH---ATEHYLITTV-ESVSTLEII   67 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--------------~g~~~~---~~~~~~~~~~-~~~~~L~i~   67 (579)
                      .+.+...|.++.+.+|++++|.|.+.+ +.+.+.|||              ++....   ...++..... ....+|+|.
T Consensus         2 ~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   80 (240)
T 3q5y_A            2 DSGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMS   80 (240)
T ss_dssp             CCCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEEC
T ss_pred             CcccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEEC
Confidence            456778889999999999999999875 667999999              222211   1245555442 346789999


Q ss_pred             CCCCCCCEEEEEEEEcC--C-eeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEe-ecCC-eEEEEE
Q psy16852         68 NPTKEDIGVYTCKATNI--G-GVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTG-RPTP-SICWYR  141 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~--~-g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~  141 (579)
                      +++.+|+|.|+|.+.+.  . ........+.|........+|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|++
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  160 (240)
T 3q5y_A           81 ALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV  160 (240)
T ss_dssp             SCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             cCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEE
Confidence            99999999999999832  1 2233345677764222223444332 334444567999999999988 4545 899999


Q ss_pred             CCEEccCCCCce---EEEcCCCCe----EEEEECcCCCCC-CeEEEEEEEcCCc
Q psy16852        142 GKEEILPDNGHT---MEFNPTTGE----CVLSISEATPQD-EAVYSVKAVNTFG  187 (579)
Q Consensus       142 ~~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~~  187 (579)
                      ++..+.......   ...  .++.    +.|.|.....+| .|.|+|.+.|...
T Consensus       161 ~g~~l~~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          161 NGKEVHSGVSTDPQAYKE--SNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             TTEEECTTEEECSSCEEE--ETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CCEECcCcEecCCceeeC--CCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            999876432211   111  1122    358899988888 7799999998654

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.77  E-value=2.7e-18  Score=157.21  Aligned_cols=224  Identities=14%  Similarity=0.184  Sum_probs=122.7

Q ss_pred             CCCCCeEEEEEEEcCCeeeEEEEEE-------EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEEC
Q psy16852        272 TKKTTGKYEIRVVNEAGEARTSGSV-------TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHD  344 (579)
Q Consensus       272 ~~~d~G~y~C~a~n~~g~~~~~~~~-------~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~  344 (579)
                      ...|.+.|.|.+.+..|....+..+       .+.+..|+.+.|.|.+.. +...+.|+...     .+.....+.+..+
T Consensus         4 ~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~-----~~~~~~~~~~~~~   77 (270)
T 3qib_D            4 ERADLIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQN-----KNNEFKFLINFQN   77 (270)
T ss_dssp             ------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEEC-----TTCCEEEEEEEET
T ss_pred             hhhhHHHHHHHHhccCCccccccceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEEC-----CCCCcEEEEEECC
Confidence            4578899999999876654433222       345778888999997543 33444443210     1111112222223


Q ss_pred             CEEccCCC----eEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCc----eeEEEEEEEEEEecccCCCCCeeec-CCC
Q psy16852        345 GTPMKEGK----EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV----GEAVAAATLAVEEKEESGEAPKFTK-PLK  415 (579)
Q Consensus       345 ~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~----g~~~~~~~l~v~~~~~~~~~p~~~~-~~~  415 (579)
                      +.......    ++.......+.++|.|.+++.+|+|.|.|.+.+..    ......+.|.|........+|.+.. .+.
T Consensus        78 ~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~  157 (270)
T 3qib_D           78 QEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPS  157 (270)
T ss_dssp             TEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECC
T ss_pred             CCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCC
Confidence            32222111    45544444567799999999999999999999642    2333445677765433334565443 334


Q ss_pred             ceeeecCCCeEEEEEEEe-eCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+..|+.++|.|.+.| .|.+ .+.|+++|..+..+.....          ..+..+...+.|.|.+.          
T Consensus       158 ~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~----------  217 (270)
T 3qib_D          158 EAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDP----------QPLKEQPALNDSRYALS----------  217 (270)
T ss_dssp             HHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECS----------SCEESCTTSSSCCEEEE----------
T ss_pred             ccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCccccc----------ccccccccCCCCCEEEE----------
Confidence            445667999999999998 6666 8999999998854321100          01122344456666544          


Q ss_pred             eCCeeEEEEeeccccc-ceeEEEEEEeCCeeEE
Q psy16852        494 DGNRSVLLISKITRDQ-IGDVTCRAENVAGSVT  525 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  525 (579)
                          +.|.|.....+| .|.|+|.|.|......
T Consensus       218 ----s~L~i~~~~~~d~~g~YtC~v~~~~l~~~  246 (270)
T 3qib_D          218 ----SRLRVSATFWQNPRNHFRCQVQFYGLSEN  246 (270)
T ss_dssp             ----EEEEEEHHHHHSTTCEEEEEEEECCBCTT
T ss_pred             ----EEEEEcHHHhccCCCeEEEEEEecCCCCc
Confidence                348999998888 9999999999866543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.77  E-value=1.6e-18  Score=156.67  Aligned_cols=178  Identities=15%  Similarity=0.174  Sum_probs=114.1

Q ss_pred             CCCceEEccCCcEEEEEEEEeecCCe-----EEEEECCEEccC---------------CCCceEE-EcCCCCeEEEEECc
Q psy16852        111 PLKPVIAEAQSPATLKATVTGRPTPS-----ICWYRGKEEILP---------------DNGHTME-FNPTTGECVLSISE  169 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~p~~~-----i~W~~~~~~~~~---------------~~~~~~~-~~~~~~~~~l~i~~  169 (579)
                      .+..+.+.+|+.++|.|.+.+.|.+.     |.|++++.....               ..+..+. .....+..+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            34456788999999999998887765     999996432110               0000000 00122345699999


Q ss_pred             CCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEE
Q psy16852        170 ATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFK  247 (579)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~  247 (579)
                      ++.+|+|.|+|.+.+..+.......+.|.           .+|.+...+.. ....|..+.|.|.+.+ .|.+ .+.|++
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~-----------~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k  156 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVV-----------ASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEK  156 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE-----------BCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEE
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEe-----------cCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEE
Confidence            99999999999999988766666666654           35555444332 3446778889999998 7888 999999


Q ss_pred             CCEEeccC---------------ceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852        248 NGKEIVSK---------------DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV  300 (579)
Q Consensus       248 ~~~~i~~~---------------~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~  300 (579)
                      +|+.+...               ........+.|.+.....+|.|.|+|.|.|..+.......+.|.+
T Consensus       157 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          157 QTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             ECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             CCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            98533211               001111235788888999999999999999988755555555444

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.77  E-value=4.7e-18  Score=157.03  Aligned_cols=177  Identities=18%  Similarity=0.271  Sum_probs=118.8

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---ec--------------CCCCEEEEEe--CCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---LH--------------ATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~~--------------~~~~~~~~~~--~~~~~L~i   66 (579)
                      +..|..+.+.+|++++|.|.+.+.+  .+.+.|||++  ..   +.              ...++.....  ....+|+|
T Consensus        26 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  105 (291)
T 2gki_A           26 LQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMEL  105 (291)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEE
T ss_pred             EEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEE
Confidence            3457789999999999999998765  4689999953  11   10              1234444332  34688999


Q ss_pred             cCCCCCCCEEEEEEEEcCC-e--e--eEEEEEEEEEec----------ccCCCCCceecCCCceEEccCCcEEEEEEEEe
Q psy16852         67 INPTKEDIGVYTCKATNIG-G--V--ATCSANLIVLEK----------EESGEAPKFTKPLKPVIAEAQSPATLKATVTG  131 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~-g--~--~~~~~~~~v~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  131 (579)
                      .+++.+|+|.|+|.+.+.. |  .  ....+.|.|...          +....++.+...+..+.+.+|++++|.|.+.+
T Consensus       106 ~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  185 (291)
T 2gki_A          106 SSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQ  185 (291)
T ss_dssp             CSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESS
T ss_pred             CcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCC
Confidence            9999999999999999864 1  1  112346666541          00111334455566778899999999999987


Q ss_pred             ecCC------eEEEEECC--EE---ccC-------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        132 RPTP------SICWYRGK--EE---ILP-------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       132 ~p~~------~i~W~~~~--~~---~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      .+.+      .+.||++.  ..   +..       ....++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus       186 ~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          186 SLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             CCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             ccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            7654      89999963  21   110       00112222223445789999999999999999998854

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.77  E-value=2.6e-18  Score=151.57  Aligned_cols=174  Identities=16%  Similarity=0.248  Sum_probs=114.7

Q ss_pred             CCCceEEccCCcEEEEEEEEee-------cCCeEEEEECCEEc-----c----------CCCCceEEEc--CCCCeEEEE
Q psy16852        111 PLKPVIAEAQSPATLKATVTGR-------PTPSICWYRGKEEI-----L----------PDNGHTMEFN--PTTGECVLS  166 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~-------p~~~i~W~~~~~~~-----~----------~~~~~~~~~~--~~~~~~~l~  166 (579)
                      .+..+.+.+|+.++|.|.+.+.       +.+.+.||+++...     .          .....++...  ...+..+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            3456778899999999998753       46799999986531     1          1111223322  223456899


Q ss_pred             ECcCCCCCCeEEEEEEEcCCceeE----EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc----
Q psy16852        167 ISEATPQDEAVYSVKAVNTFGRAE----CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT----  238 (579)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----  238 (579)
                      |.+++.+|+|.|+|.+.+..+...    ....+.|...        ..+|.+..+.   .+.+|+.++|.|.+.+.    
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~--------~~~p~i~~~~---~~~~G~~v~L~C~~~~~~~~~  154 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL--------IEKPDIHFLE---PLESGRPTRLSCSLPGSCEAG  154 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECC--------CCCCEEC--C---CCCTTCCEEEEEECTTCCSCS
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecC--------CCCCceecCc---cccCCCeEEEEEEeccCCCCC
Confidence            999999999999999998753222    1334444321        1234443322   26789999999998763    


Q ss_pred             CCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEE
Q psy16852        239 PTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI  298 (579)
Q Consensus       239 p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v  298 (579)
                      |.+.+.|++++.......   ....+.|.|..+..+|.|.|+|.|.|..+....+..+.|
T Consensus       155 p~p~v~W~~~~~~~~~~~---~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l  211 (214)
T 2zg1_A          155 PPLTFSWTGNALSPLDPE---TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL  211 (214)
T ss_dssp             SCCEEEEESSTTSSSCSS---CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEEC
T ss_pred             CCceEEEeCCCCccCCCC---ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEE
Confidence            788999999986543221   134567999999999999999999997655444444443

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.77  E-value=2.3e-18  Score=153.17  Aligned_cols=178  Identities=16%  Similarity=0.234  Sum_probs=116.5

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC----CeeEEEEC--CEE---ec-------------CCCCEEEEEe--CCEEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL----PTMTWQKD--GTE---LH-------------ATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~--g~~---~~-------------~~~~~~~~~~--~~~~~L~i   66 (579)
                      ..|.++.+.+|++++|.|.+.+.+.    +.+.|||+  |..   +.             ...++.+...  .+..+|+|
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (228)
T 3bae_H            5 KESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI   84 (228)
T ss_dssp             EEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred             eCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence            3478899999999999999987664    78999984  221   10             1234544433  24689999


Q ss_pred             cCCCCCCCEEEEEEEEcCCe------e---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-
Q psy16852         67 INPTKEDIGVYTCKATNIGG------V---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-  135 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g------~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-  135 (579)
                      .+++.+|+|.|+|.+.+..|      .   ....+.|.|...+  ..+|.+........+.+|+.++|.|.+.+. |.+ 
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~  162 (228)
T 3bae_H           85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK--TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV  162 (228)
T ss_dssp             CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC--CBCCEEEEECC-----CCSEEEEEEEEEEEBSSCC
T ss_pred             cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC--CCCCEEEEecccccccCCCCEEEEEEEccEeCCCE
Confidence            99999999999999988653      1   1123667776321  223444332222335689999999999886 766 


Q ss_pred             eEEEEECCEEccCCCCceEEEcCC--CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852        136 SICWYRGKEEILPDNGHTMEFNPT--TGECVLSISEATPQDEAVYSVKAVNTFGRAECR  192 (579)
Q Consensus       136 ~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (579)
                      .|.|++++..+......... ...  ...+.|.|..+..+| |.|+|.|.|..+.....
T Consensus       163 ~v~W~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          163 TLTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             EEEEGGGTCCTTEEEEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEEEeeCCcccCceEcCcee-CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            99999987643211111111 110  013568999988866 99999999988765443

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.77  E-value=2.3e-17  Score=146.84  Aligned_cols=184  Identities=14%  Similarity=0.162  Sum_probs=116.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Eec-------------CCCCEEEEEe--CCEEEEEEcC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---ELH-------------ATEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~~-------------~~~~~~~~~~--~~~~~L~i~~   68 (579)
                      .+|.++.+.+|++++|.|.+.+.+  ...+.|||..  .   .+.             ...++.+...  .+..+|+|.+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (232)
T 1dn0_B            5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSS   84 (232)
T ss_dssp             EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECC
Confidence            457788999999999999998754  4689999842  2   110             1345655543  3467999999


Q ss_pred             CCCCCCEEEEEEEEcCC--e----eeEEEEEEEEEecccCCCCCceecCCCceEEccC-CcEEEEEEEEee-cCC-eEEE
Q psy16852         69 PTKEDIGVYTCKATNIG--G----VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQ-SPATLKATVTGR-PTP-SICW  139 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~--g----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~i~W  139 (579)
                      ++.+|+|.|+|.+.+..  +    .....+.|.|...+  ..+|.+........+..| +.++|.|.+.+. |.+ .+.|
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W  162 (232)
T 1dn0_B           85 VTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS--ASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSW  162 (232)
T ss_dssp             CCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC--CBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred             CCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCC--CCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence            99999999999998321  1    12234567776421  123443321111234478 999999999876 765 9999


Q ss_pred             EE-CCEEccCCCCc-eEEEc-CCCCeEEEEECcCCC--CCCeEEEEEEEcCCceeEEEEEEE
Q psy16852        140 YR-GKEEILPDNGH-TMEFN-PTTGECVLSISEATP--QDEAVYSVKAVNTFGRAECRANLV  196 (579)
Q Consensus       140 ~~-~~~~~~~~~~~-~~~~~-~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~~~~~~~  196 (579)
                      ++ ++..+...... ..... .....+.|.|.....  +|.|.|+|.+.|..+.......+.
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~  224 (232)
T 1dn0_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLP  224 (232)
T ss_dssp             EETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECC
T ss_pred             EcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecC
Confidence            99 88776430000 00000 000124689988887  889999999999988765554443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.77  E-value=1e-18  Score=154.03  Aligned_cols=182  Identities=15%  Similarity=0.134  Sum_probs=114.8

Q ss_pred             CCCCccccccCcee--eeCCCCEEEEEEEEeeC---C-CeeEEEECCEEecCCCCEEEEEe-C----CEEEEEEcCCCCC
Q psy16852          4 VLAPRFIEKIQPVV--SHQEQPALFTCKVEGHP---L-PTMTWQKDGTELHATEHYLITTV-E----SVSTLEIINPTKE   72 (579)
Q Consensus         4 ~~~p~~~~~p~~~~--v~~G~~~~l~C~~~~~~---~-~~v~W~~~g~~~~~~~~~~~~~~-~----~~~~L~i~~~~~~   72 (579)
                      ..+|.+...|....  +.+|++++|.|.+.+.+   . +.|.|||++..+........... .    ....|.|.+++.+
T Consensus         7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   86 (218)
T 2rgs_A            7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM   86 (218)
T ss_dssp             --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred             CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence            34677766666655  89999999999998873   3 68999999987753321111100 1    1357999999999


Q ss_pred             CCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEEECCEEccCCC
Q psy16852         73 DIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEEILPDN  150 (579)
Q Consensus        73 d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~~  150 (579)
                      |+|.|+|.+.|..+.......+..  ......+|.+...+......+|+.++|.|.+.| +|.+ .|+|++++..+....
T Consensus        87 D~g~Y~C~~~~~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  164 (218)
T 2rgs_A           87 SGKEFKCKVNNKDLPSPIERTISK--IKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK  164 (218)
T ss_dssp             TTCCEEEEEEETTCSSCEEEEECC--CCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred             CCCeEEEEEECCcCCCcceEEEee--cCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce
Confidence            999999999998664311122211  011123444433222222235999999999998 4654 999999998874321


Q ss_pred             CceEEEcCCCCe----EEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        151 GHTMEFNPTTGE----CVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       151 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      ....... .++.    ..|.+.....+|.|.|+|.|.|....
T Consensus       165 ~~~~~~~-~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          165 DTAPVLD-SDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             ECCCEEC-TTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             ecccEEC-CCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            1111111 1221    24556555556799999999998653

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.76  E-value=4.6e-18  Score=150.08  Aligned_cols=171  Identities=13%  Similarity=0.152  Sum_probs=114.4

Q ss_pred             CCceEEccCCcEEEEEEE-Eeec-CCeEEEEECCE--Ec---c-------CCCCceEEEcCCCCeEEEEECcCCCCCCeE
Q psy16852        112 LKPVIAEAQSPATLKATV-TGRP-TPSICWYRGKE--EI---L-------PDNGHTMEFNPTTGECVLSISEATPQDEAV  177 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~-~~~p-~~~i~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  177 (579)
                      +..+.+.+|+.++|.|.+ .+.+ .+.|.||+++.  .+   .       .....++......+..+|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            456788999999999995 4333 57999999531  11   0       111122322223456789999999999999


Q ss_pred             EEEEEEcCCce--eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEec
Q psy16852        178 YSVKAVNTFGR--AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIV  253 (579)
Q Consensus       178 Y~C~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~  253 (579)
                      |+|.+.+..+.  ......+.+..        ...+|.+...........|+.++|.|.+.+ .|.+ .+.|+++|..+.
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~--------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~  158 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKR--------TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS  158 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECC--------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             EEEEEEeCCCcceECCCEEEEEcC--------CCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecC
Confidence            99999998751  11223344421        113555554322222335889999999998 5554 899999999887


Q ss_pred             cCceEE----------eCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        254 SKDIET----------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       254 ~~~~~~----------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                      ......          ....+.|.|..+..+|+|.|+|.|.|.....
T Consensus       159 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          159 GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            651110          0112479999999999999999999987553

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.76  E-value=1e-17  Score=151.93  Aligned_cols=183  Identities=17%  Similarity=0.206  Sum_probs=121.1

Q ss_pred             ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--E---Ec----------cCCCCceEEEcCCCCeEEEEECcCC
Q psy16852        107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--E---EI----------LPDNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~---~~----------~~~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      .+...+..+.+.+|+.++|.|.+.+.|.+.+.||+..  .   .+          ....++....+...+..+|.|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            3445566788999999999999988889999999832  1   01          1123444444556677899999999


Q ss_pred             CCCCeEEEEEEEcCCcee----EEEEEEEEeecc---------ccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc
Q psy16852        172 PQDEAVYSVKAVNTFGRA----ECRANLVLRKAT---------TIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT  238 (579)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~----~~~~~~~v~~~~---------~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  238 (579)
                      .+|+|.|+|.+.+..+..    .....+.|....         .........+|.+...+....+.+|+.++|.|.+.+.
T Consensus        85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  164 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS  164 (256)
T ss_dssp             GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC
T ss_pred             cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC
Confidence            999999999999875421    112344443200         0000011235566666777778899999999999876


Q ss_pred             CCCeEEEEECC--EE---ecc-------------CceE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        239 PTPEVKWFKNG--KE---IVS-------------KDIE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       239 p~~~v~W~~~~--~~---i~~-------------~~~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                       .+.+.|++..  ..   +..             ....   .......|.|.+++.+|+|.|+|.|.|..|..
T Consensus       165 -~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~  236 (256)
T 3tf7_C          165 -HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQL  236 (256)
T ss_dssp             -CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEE
T ss_pred             -ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCcc
Confidence             6799999832  11   100             0000   01234589999999999999999999876643

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.76  E-value=3e-18  Score=145.02  Aligned_cols=156  Identities=16%  Similarity=0.206  Sum_probs=111.2

Q ss_pred             cCceeeeCCCCEEEEEEEE--eeCCCeeEEEE--CCEEe----------cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852         13 IQPVVSHQEQPALFTCKVE--GHPLPTMTWQK--DGTEL----------HATEHYLITTVESVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~--~~~~~~v~W~~--~g~~~----------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   78 (579)
                      +..+.+.+|++|+|.|...  +.+.+.|.|++  ++..+          ....++.+.   .+++|.|.+++.+|+|.|+
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~---~ngsL~I~~v~~~DsG~Y~   82 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF---KNGTLKIKHLKTDDQDIYK   82 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC---TTSCEEECSCCGGGCEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC---CCCCEEECCCChhhCEEEE
Confidence            4568899999999999542  23456899999  88876          234444433   2348999999999999999


Q ss_pred             EEEEcCCeeeE--EEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEE
Q psy16852         79 CKATNIGGVAT--CSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF  156 (579)
Q Consensus        79 C~~~~~~g~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  156 (579)
                      |.+.|..|...  ..+.|.|.+..   ..|.+.        ..+..+.|.|.+.+.|.+.|.|++++..+ ....     
T Consensus        83 c~~~n~~g~~~~~~~~~L~V~~~~---~~P~i~--------~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~-----  145 (182)
T 1hnf_A           83 VSIYDTKGKNVLEKIFDLKIQERV---SKPKIS--------WTCINTTLTCEVMNGTDPELNLYQDGKHL-KLSQ-----  145 (182)
T ss_dssp             EEEEETTSCEEEEEEEEEEEECCC---CCCEEE--------EETTTTEEEEECSSCSSCEEEEEESSCEE-EEES-----
T ss_pred             EEEEeCCCceeEEEEEEEEEcCcC---CCCEEE--------EccCcEEEEeEccCCCCCEEEEEECCEEC-CCCC-----
Confidence            99999877654  35566776431   122222        13447999999988889999999998877 1111     


Q ss_pred             cCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852        157 NPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL  195 (579)
Q Consensus       157 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  195 (579)
                            ..|.+.. ..+|+|.|+|.|.|..+.......+
T Consensus       146 ------~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          146 ------RVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             ------SCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             ------cEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence                  1233322 4789999999999999877665544

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.76  E-value=2.1e-18  Score=146.46  Aligned_cols=152  Identities=20%  Similarity=0.208  Sum_probs=107.9

Q ss_pred             cCceeeeCCCCEEEEEEEEe-eCCCeeEEEEC-CEEec------------CC--CCEEEEEeCCEEEEEEcCCCCCCCEE
Q psy16852         13 IQPVVSHQEQPALFTCKVEG-HPLPTMTWQKD-GTELH------------AT--EHYLITTVESVSTLEIINPTKEDIGV   76 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~-g~~~~------------~~--~~~~~~~~~~~~~L~i~~~~~~d~G~   76 (579)
                      ..++.+.+|++|+|.|.+.+ .+.+.|.|+|+ +..+.            ..  .++  .....+.+|+|.+++.+|+|.
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~--~l~~~~~sL~I~~v~~~D~G~   83 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV--DLDKTNGALRIYNVSKEDRGD   83 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTE--EECTTTCCEEECSCCGGGCEE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeE--EEeCCCccEEEcCCCHHHCeE
Confidence            45688999999999999844 34579999994 33221            11  222  233345789999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEE-EeecCCeEEEEECCEEccCCCCceEE
Q psy16852         77 YTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTME  155 (579)
Q Consensus        77 Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~  155 (579)
                      |+|.+.+.. .....+.|.|..++   ..|.+.        ..+..++|.|.+ .+ |.+.|.|++++..+...      
T Consensus        84 Y~C~v~~~~-~~~~~~~L~V~~~~---~~P~i~--------~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~------  144 (180)
T 2dru_A           84 YYMRMLHET-EDQWKITMEVYEMV---SKPMIY--------WECSNATLTCEVLEG-TDVELKLYQGKEHLRSL------  144 (180)
T ss_dssp             EEEEEESSS-EEEEEEEEEEECCC---CCCEEE--------EEGGGTEEEEECSSC-TTCEEEEEETTEEEEEE------
T ss_pred             EEEEEEcCC-eEEEEEEEEEECCC---CCCEEE--------ecCCCEEEEEEeCCC-CCCEEEEEECCeECcCC------
Confidence            999998766 55666777776532   122222        245679999999 66 89999999999877511      


Q ss_pred             EcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852        156 FNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR  192 (579)
Q Consensus       156 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (579)
                           ...+|.+..  .+|+|.|+|.|.|..+.....
T Consensus       145 -----~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~  174 (180)
T 2dru_A          145 -----RQKTMSYQW--TNLRAPFKCKAVNRVSQESEM  174 (180)
T ss_dssp             -----SSSEEEEEC--SCCSSCEEEEEEETTEEEEEE
T ss_pred             -----CCCEEEEEE--hhcCccEEEEEecCcCccccc
Confidence                 112455533  789999999999998876544

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.76  E-value=4.7e-18  Score=147.93  Aligned_cols=168  Identities=13%  Similarity=0.029  Sum_probs=113.2

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      +|.+...+. ..+.+|++++|.|.+. .+.+.+.|||++..+....... ..........|.|.+++.+|+|.|+|.+.+
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~-~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIG-EHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEEC-EEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeee-ecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            445554444 5678999999999986 4678999999887543211000 011122346899999999999999999986


Q ss_pred             CCc-----eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--e
Q psy16852        185 TFG-----RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--I  257 (579)
Q Consensus       185 ~~~-----~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~  257 (579)
                      ...     .......+.+..        ...+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+....  .
T Consensus        85 ~~~~~~~~~~s~~~~l~V~~--------~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~  154 (201)
T 1nkr_A           85 THSPYQVSAPSDPLDIVIIG--------LYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAG  154 (201)
T ss_dssp             TTBTTCCCCCCCCEEEEEEC--------SSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECE
T ss_pred             CCCCccccCCCCCEEEEeec--------cCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccc
Confidence            532     112233444432        123456554444 35889999999999875 567999999997654321  1


Q ss_pred             EEeC--CeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        258 ETKD--NVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       258 ~~~~--~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      ....  ....|.|.+++  |+|.|+|.|.+..
T Consensus       155 ~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          155 PKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             cccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            1111  25689999998  9999999998754

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.76  E-value=1.1e-17  Score=144.30  Aligned_cols=160  Identities=13%  Similarity=0.179  Sum_probs=109.2

Q ss_pred             CCceEEccCCcEEEEEEEEe-ecCCeEEEEECCEEcc---CCCC-------------ceEEEcCCCCeEEEEECcCCCCC
Q psy16852        112 LKPVIAEAQSPATLKATVTG-RPTPSICWYRGKEEIL---PDNG-------------HTMEFNPTTGECVLSISEATPQD  174 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~---~~~~-------------~~~~~~~~~~~~~l~i~~~~~~d  174 (579)
                      +..+.+.+|++++|.|.+.+ .+.+.|.|++++..+.   ....             .+....   ..++|.|.+++.+|
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D   81 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKMED   81 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGGG
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCccc
Confidence            45567889999999999864 3447999999876542   1110             122222   23579999999999


Q ss_pred             CeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCC-eEEEEEEEEcc-CCCeEEEEECCEEe
Q psy16852        175 EAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDS-TVTLEAEYTGT-PTPEVKWFKNGKEI  252 (579)
Q Consensus       175 ~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~v~W~~~~~~i  252 (579)
                      +|.|+|.+.+..+.......+.|...        ...|.+....  .....|. .++|.|.+.+. |.+.+.|+++|..+
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~L~V~~~--------~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l  151 (193)
T 2if7_A           82 TGSYRAQISTKTSAKLSSYTLRILRQ--------LRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL  151 (193)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECC--------CEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEEEEcc--------CCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEc
Confidence            99999999998876555555555311        0113333222  1123455 89999999984 57899999999876


Q ss_pred             ccCceEEeCCeEEEEEcccCCC-CCeEEEEEEEcCCeeeEE
Q psy16852        253 VSKDIETKDNVTKLVIKQTTKK-TTGKYEIRVVNEAGEART  292 (579)
Q Consensus       253 ~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~a~n~~g~~~~  292 (579)
                      ...        ..|.|.....+ |.|.|+|.|.|..|....
T Consensus       152 ~~~--------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~  184 (193)
T 2if7_A          152 SSQ--------PNLTVSWDPRISSEQDYTCIAENAVSNLSF  184 (193)
T ss_dssp             ESS--------SEEEEEECTTTCSCCEEEEEEEETTEEEEE
T ss_pred             CCC--------CeEEEEeccCcCCCCcEEEEEECCCCcccc
Confidence            432        24666544444 899999999999987643

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.76  E-value=8.1e-19  Score=147.59  Aligned_cols=154  Identities=23%  Similarity=0.222  Sum_probs=108.7

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC--CC--------CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA--TE--------HYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~--~~--------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +..+.+.+|++|+|.|.+. .|.+.|.|++++..+..  ..        +.++.....+.+|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            2 SQQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             ccEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEe
Confidence            3467899999999999984 47789999999875421  00        0122333345789999999999999999998


Q ss_pred             cCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852         83 NIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE  162 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  162 (579)
                      +..|  ...+.|.|..++   ..|.+....        ....|.|.+.+.|.+.+.|++++..+......          
T Consensus        81 n~~~--~~~~~L~V~~~~---~~p~i~~~~--------~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~----------  137 (171)
T 1ccz_A           81 NITD--TMKFFLYVLEMV---SKPMIYWEC--------SNATLTCEVLEGTDVELKLYQGKEHLRSLRQK----------  137 (171)
T ss_dssp             TCCS--CEEEEEEEECCC---CCCEEEEET--------TTTEEEEECSSCSSCEEEEEETTEEEEEESSS----------
T ss_pred             CCCC--cEEEEEEEECcC---CCCEEEEec--------CCcEEEEEeCCCCCcEEEEEECCEECcCCcce----------
Confidence            8777  556677776542   123332211        11389999988899999999999877532221          


Q ss_pred             EEEEECcCCCCCCeEEEEEEEcCCceeEEEE
Q psy16852        163 CVLSISEATPQDEAVYSVKAVNTFGRAECRA  193 (579)
Q Consensus       163 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  193 (579)
                       .|.+.  ...|.|.|+|.|.|..+......
T Consensus       138 -~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~  165 (171)
T 1ccz_A          138 -TMSYQ--WTNLRAPFKCKAVNRVSQESEME  165 (171)
T ss_dssp             -EEEEE--CSCCSSCEEEEEEETTEEEEEEE
T ss_pred             -EEEEe--ccCCCceEEEEEEcccCccccee
Confidence             23333  36789999999999988765543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.76  E-value=2.2e-18  Score=154.86  Aligned_cols=185  Identities=12%  Similarity=0.067  Sum_probs=101.8

Q ss_pred             CCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCce-----eEEEEEEEEEEecccCCCCCee
Q psy16852        336 TPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG-----EAVAAATLAVEEKEESGEAPKF  410 (579)
Q Consensus       336 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~~p~~  410 (579)
                      .+.+.|+|+|..+.................|.|.+++.+|+|.|+|.+.+..+     ..+..+.|.|....   .+|.+
T Consensus        34 ~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~---~~P~l  110 (257)
T 1b6u_A           34 FQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLY---EKPSL  110 (257)
T ss_dssp             CSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSS---CCCEE
T ss_pred             CcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCC---CCcce
Confidence            45789999886543111000001112345899999999999999999986432     23445677776532   35666


Q ss_pred             ecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        411 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       411 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      ...+. ..+.+|+.++|.|.+.+. .+.|.|+|+|..+........                 .                
T Consensus       111 ~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~-----------------~----------------  155 (257)
T 1b6u_A          111 SAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGP-----------------K----------------  155 (257)
T ss_dssp             ECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBC-----------------C----------------
T ss_pred             EccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCccccccc-----------------c----------------
Confidence            65444 367899999999999865 469999999876633221100                 0                


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCe-----eEEEEEEEEEeeCCcccccccCCccccC-CCceEEecCCcEEE
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAG-----SVTCTATLSLLPESEVTDVMESPRFIKT-PETAKVMDGQSVLF  564 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~v~~~p~~~~~-~~~~~~~~g~~~~l  564 (579)
                       ........|.|.+++  |+|.|+|.|.|..+     .....+.|.|.         .+|.+..+ |.......|..+.|
T Consensus       156 -~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~---------g~p~~~~p~~~~~~~~~g~~~~l  223 (257)
T 1b6u_A          156 -VNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVT---------GNPSNSWPSPTEPSSETGNPRHL  223 (257)
T ss_dssp             -SSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCB---------CCC--------------------
T ss_pred             -cCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEe---------ccCCCCCCCCcccCccCCCeEEE
Confidence             001124568999998  99999999997632     22334555543         55555422 22234567999999


Q ss_pred             EEEecc
Q psy16852        565 TAQVGY  570 (579)
Q Consensus       565 ~C~~~~  570 (579)
                      .|.+..
T Consensus       224 ~~~~~~  229 (257)
T 1b6u_A          224 HAAAEQ  229 (257)
T ss_dssp             ------
T ss_pred             EEEEcc
Confidence            998854

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.76  E-value=8.3e-18  Score=151.78  Aligned_cols=200  Identities=16%  Similarity=0.222  Sum_probs=124.8

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEE--CCEEccCC---CeEEEEECCCCeEEEEEccc
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSH--DGTPMKEG---KEVTIYQDTDGLCKLAISEV  371 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~--~~~~~~~~---~~~~~~~~~~~~~~l~i~~~  371 (579)
                      .+.+..|..+.|.|.+...+...+.|+...     .+.....+.+..  ++......   .++.+..+..+.++|.|.++
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   84 (246)
T 4dzb_B           10 WVISKSGTSVKIECRSLDFQATTMFWYRQF-----PKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSA   84 (246)
T ss_dssp             EEEEETTSCEEEEEEESSSCCCSEEEEEEC-----TTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSC
T ss_pred             EEEEeCCCcEEEEeEecCCCceEEEEEEEC-----CCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCC
Confidence            355678888888887665554555554310     011111111111  33333322   45555544456779999999


Q ss_pred             CCCCCEEEEEEEEcCce----eEEEEEEEEEEecccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeC
Q psy16852        372 FPENAGLYSCTAVNPVG----EAVAAATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTP--SICWYRG  444 (579)
Q Consensus       372 ~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~  444 (579)
                      +.+|+|.|+|.+.+..+    .......|.|........+|.+. ..+....+..|+.++|.|.+.|.|++  .+.|+++
T Consensus        85 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  164 (246)
T 4dzb_B           85 HPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  164 (246)
T ss_dssp             CGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEEC
Confidence            99999999999987643    23344567776532223355554 34444556779999999999997765  8999999


Q ss_pred             CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCee
Q psy16852        445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGS  523 (579)
Q Consensus       445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  523 (579)
                      |..+....+...          .........+.|.|.+..              .|.|.....+| .|.|+|.|.|....
T Consensus       165 g~~l~~~~~~~~----------~~~~~~~~~~~g~~~~~s--------------~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          165 GKEVHSGVCTDP----------QPLKEQPALNDSRYALSS--------------RLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             TEEECTTEEECS----------SCEESSTTSTTCCEEEEE--------------EEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             CEECCCCccccc----------ccccccccCCCCCEEEEE--------------EEEECHHHhccCCCeEEEEEEecCCC
Confidence            998854321110          001112223456665443              39999999988 99999999998665


Q ss_pred             EE
Q psy16852        524 VT  525 (579)
Q Consensus       524 ~~  525 (579)
                      ..
T Consensus       221 ~~  222 (246)
T 4dzb_B          221 EN  222 (246)
T ss_dssp             TT
T ss_pred             Cc
Confidence            44

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.76  E-value=1.5e-17  Score=150.51  Aligned_cols=165  Identities=12%  Similarity=0.182  Sum_probs=117.6

Q ss_pred             CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEc---c--------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEI---L--------------PDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~---~--------------~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +..+.+.+|+.++|.|.+.+.|  .+.|.||+++  ..+   .              ...+..+..+...+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            4557788999999999998765  5799999942  211   0              12344444444456789999999


Q ss_pred             CCCCCeEEEEEEEcCCce---eE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC----
Q psy16852        171 TPQDEAVYSVKAVNTFGR---AE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP----  241 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~---~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~----  241 (579)
                      +.+|+|.|+|.+.+..|.   ..  ....+.|.           .+|.+...+....+.+|+.++|.|.+.+.|.+    
T Consensus        87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~-----------~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~  155 (256)
T 1nqb_A           87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS-----------SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGN  155 (256)
T ss_dssp             CGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC-----------CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSC
T ss_pred             ChhhCEEEEEEEeeccCccceeEEcCceeeeec-----------ccccEEecCcEEEEecCCcEEEEeEecCcccccccc
Confidence            999999999999987552   11  12334432           34555555666778999999999999987765    


Q ss_pred             -eEEEEE--CCEEec-------------cCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        242 -EVKWFK--NGKEIV-------------SKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       242 -~v~W~~--~~~~i~-------------~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                       .+.|++  ++..+.             ...  .........|.|.+++.+|+|.|+|.|.+..
T Consensus       156 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  219 (256)
T 1nqb_A          156 TYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHV  219 (256)
T ss_dssp             BCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             eEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCC
Confidence             999999  555331             011  1123456789999999999999999998743

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.76  E-value=9.9e-19  Score=153.91  Aligned_cols=139  Identities=19%  Similarity=0.220  Sum_probs=93.7

Q ss_pred             CeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcC-ceeE--EEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEE
Q psy16852        352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNP-VGEA--VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLK  428 (579)
Q Consensus       352 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~-~g~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~  428 (579)
                      .++.... ..+...|.|.++..+|+|.|+|.|.|. .+..  .....|.|...  ...+|.+........+.+|+.++|.
T Consensus        58 ~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~--~~~~p~v~~~~~~~~~~~g~~v~L~  134 (212)
T 1nfd_E           58 ERFSGST-SGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRG--PKSSPKVTVFPPSPEELRTNKATLV  134 (212)
T ss_dssp             TTEEEEE-ETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECC--CCBCCEEECCCCCHHHHHTTEECCC
T ss_pred             ccEEEEe-eCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccC--CCCCCEEEeeCCchHhccCCceEEE
Confidence            3444433 345568999999999999999999962 2211  23345666432  1236666654444445689999999


Q ss_pred             EEEEee-CC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecc
Q psy16852        429 ATVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKIT  506 (579)
Q Consensus       429 C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~  506 (579)
                      |.+.|. |+ +.|.|+++|..+..+....               .......| |..              .+.|.|.++.
T Consensus       135 C~~~g~~p~~~~v~W~k~g~~~~~~~~~~---------------~~~~~~~~-~~~--------------~s~L~i~~~~  184 (212)
T 1nfd_E          135 CLVNDFYPGSATVTWKANGATINDGVKTT---------------KPSKQGQN-YMT--------------SSYLSLTADQ  184 (212)
T ss_dssp             EEEEEEBSSCCEEEEEETTEEECSSCBCC---------------CCBCSSSC-EEE--------------EEBCCEEHHH
T ss_pred             EEEEeeECCccEEEEEECCeEcCCCeecC---------------CceecCCC-ceE--------------EEEEEEchhh
Confidence            999987 55 7999999999886542110               01111122 322              2449999999


Q ss_pred             cccceeEEEEEEeCCee
Q psy16852        507 RDQIGDVTCRAENVAGS  523 (579)
Q Consensus       507 ~~d~G~Y~C~a~n~~g~  523 (579)
                      .+|+|.|+|.|.|..+.
T Consensus       185 ~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          185 WKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             HHTCSCEEEEEECTTTT
T ss_pred             cCCCCeEEEEEEeCCce
Confidence            99999999999998775

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.76  E-value=3.2e-18  Score=151.47  Aligned_cols=176  Identities=14%  Similarity=0.198  Sum_probs=115.6

Q ss_pred             CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEcc-----------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEIL-----------------PDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +.++.+.+|++++|.|.+.+.+  .+.+.||+++  ..+.                 ...+..+..+...+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            4456788999999999998765  6899999963  2211                 01233333333345679999999


Q ss_pred             CCCCCeEEEEEEEcCCcee--E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEE
Q psy16852        171 TPQDEAVYSVKAVNTFGRA--E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVK  244 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~  244 (579)
                      +.+|+|.|+|.+.+..+..  .  ....+.|...       ...+|.+........+.+|+.+.|.|.+.+ .|.+ .+.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  159 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSA-------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  159 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCC-------CCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEecC-------CCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEE
Confidence            9999999999999876321  1  2234444321       112354443333334678999999999998 8988 999


Q ss_pred             EEECCEEeccC---ceEE---eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEE
Q psy16852        245 WFKNGKEIVSK---DIET---KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS  295 (579)
Q Consensus       245 W~~~~~~i~~~---~~~~---~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~  295 (579)
                      |+++|..+...   ....   ....+.|.|..... |.|.|+|.|.|..+.......
T Consensus       160 W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~  215 (219)
T 1c1e_H          160 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKK  215 (219)
T ss_dssp             EGGGTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEE
T ss_pred             EEeCCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEe
Confidence            99998764211   1110   11234688844444 569999999998876554443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.76  E-value=9.4e-18  Score=149.62  Aligned_cols=167  Identities=12%  Similarity=0.012  Sum_probs=117.1

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEc
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVN  184 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  184 (579)
                      .|.+...+.. .+.+|+.++|.|.+.+ +...+.|||++..+......   .........|.|.+++.+|+|.|+|.+.+
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~---~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   81 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK---PPERINKVKFYIPDMNSRMAGQYSCIYRV   81 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS---SCTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccccccc---ccCCcceeEEEecCCCcccCeEEEEEEec
Confidence            4555555555 7889999999999764 45799999998875421100   01123457899999999999999999987


Q ss_pred             CCceeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCC
Q psy16852        185 TFGRAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDN  262 (579)
Q Consensus       185 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~  262 (579)
                      ..+...  ....+.|..        ...+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|+|..+.. .......
T Consensus        82 ~~~~s~~S~~~~L~V~~--------~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~-~~~~~~~  150 (242)
T 1p6f_A           82 GELWSEPSNLLDLVVTE--------MYDTPTLSVHPG-PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV-QRGYGKV  150 (242)
T ss_dssp             TTEECCCCCCEEEEEEC--------CSCCCEEEEESC-SEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE-EEEECSS
T ss_pred             CCccccCCcceEEEeec--------ccCCCceEccCC-CccCCCCcEEEEEecCCC-CCEEEEEECCCccCc-cccCCCc
Confidence            644322  223444431        113555554443 357899999999998654 459999999876543 1223456


Q ss_pred             eEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        263 VTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       263 ~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      ...|.|.+++.+|+|.|+|.+.|..
T Consensus       151 ~~~l~I~~v~~~d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          151 QAEFPLGPVTTAHRGTYRCFGSYNN  175 (242)
T ss_dssp             EEEEEEEECCGGGCEEEEEEEEEET
T ss_pred             eEEEEeCCCccccCEEEEEEEECCC
Confidence            6889999999999999999998764

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.76  E-value=3e-18  Score=156.91  Aligned_cols=203  Identities=18%  Similarity=0.286  Sum_probs=113.1

Q ss_pred             CCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--EE-
Q psy16852         69 PTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EE-  145 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~-  145 (579)
                      .++.|.+.|.|++.+..|.......+            .+...+..+.+.+|++++|.|.+.+ +.+.+.|||..  .. 
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~------------~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~   69 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGM------------KVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEF   69 (270)
T ss_dssp             -------------------------C------------CCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCE
T ss_pred             chhhhHHHHHHHHhccCCccccccce------------eEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCc
Confidence            45789999999999876654433222            3334456678899999999999865 77899999821  10 


Q ss_pred             --ccC-CCC---------c-eEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCc----eeEEEEEEEEeeccccCCCC
Q psy16852        146 --ILP-DNG---------H-TMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFG----RAECRANLVLRKATTIDKPR  207 (579)
Q Consensus       146 --~~~-~~~---------~-~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~~v~~~~~~~~~~  207 (579)
                        +.. ...         . ++... ...+..+|.|.+++.+|+|.|+|.+.+...    .......+.+...     ..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-----~~  144 (270)
T 3qib_D           70 KFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLED-----LK  144 (270)
T ss_dssp             EEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESC-----ST
T ss_pred             EEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccc-----cc
Confidence              000 000         0 22221 234568999999999999999999986421    1112233444311     01


Q ss_pred             ccCCCeEec-cCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEeccCceEE--------------eCCeEEEEEcc
Q psy16852        208 VLEAPTIVR-PLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDIET--------------KDNVTKLVIKQ  270 (579)
Q Consensus       208 ~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~~~~--------------~~~~~~l~i~~  270 (579)
                      ...+|.+.. .+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+.......              ....+.|.|..
T Consensus       145 ~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~  224 (270)
T 3qib_D          145 NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSA  224 (270)
T ss_dssp             TCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEH
T ss_pred             cccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcH
Confidence            112444332 233333556999999999998 6666 899999999986533111              11125578888


Q ss_pred             cCCCC-CeEEEEEEEcCCee
Q psy16852        271 TTKKT-TGKYEIRVVNEAGE  289 (579)
Q Consensus       271 ~~~~d-~G~y~C~a~n~~g~  289 (579)
                      ...+| .|.|+|.|.|....
T Consensus       225 ~~~~d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          225 TFWQNPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             HHHHSTTCEEEEEEEECCBC
T ss_pred             HHhccCCCeEEEEEEecCCC
Confidence            87777 99999999987654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.76  E-value=1.5e-17  Score=149.27  Aligned_cols=148  Identities=10%  Similarity=0.124  Sum_probs=90.9

Q ss_pred             eEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeE-----EEEEEEEEEecccCCC------CCeeecCCCceeeec
Q psy16852        353 EVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA-----VAAATLAVEEKEESGE------APKFTKPLKPVIAEA  421 (579)
Q Consensus       353 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~~~~~------~p~~~~~~~~~~~~~  421 (579)
                      ++.+........+|.|.++..+|+|.|+|.|.|..|..     .....|.|...+....      .+.+...+....+.+
T Consensus        62 r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~  141 (238)
T 2p1y_A           62 GYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWE  141 (238)
T ss_dssp             TCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEET
T ss_pred             eEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeC
Confidence            34443333445689999999999999999999976521     1344677765321000      014555566678999


Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee--eeCCeeE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM--TDGNRSV  499 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~--~~~~~~~  499 (579)
                      |+.++|.|.+.+.|.+.+.|+|++..-  .....+... .+.         ...         ...++.+.  .....+.
T Consensus       142 G~~v~L~C~~~~~p~~~i~W~k~~~~~--~~~~~~~~~-~~~---------~~~---------~~~r~~~~~~~~~~~~~  200 (238)
T 2p1y_A          142 GETAILNCSYENSAFDYFPWYQQFPGE--GPALLISIL-SVS---------DKK---------EDGRFTIFFNKREKKLS  200 (238)
T ss_dssp             TSCEEEEEECCCTTCCEEEEEEECTTS--CCEEEEEEE-TTC---------SEE---------EETTEEEEEETTTTEEE
T ss_pred             CCeEEEEEEEecCCCCcEEEEEECCCC--CCEEEEEEc-cCC---------Ccc---------cCCceEEEecCCCCeEE
Confidence            999999999999999999999964100  000000000 000         000         01112222  2345677


Q ss_pred             EEEeecccccceeEEEEEEeCC
Q psy16852        500 LLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       500 l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      |+|.+++.+|+|.|+|.|.|..
T Consensus       201 L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          201 LHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEcCCCHHHCEEEEEEEeeCC
Confidence            9999999999999999999984

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.75  E-value=1.5e-17  Score=149.22  Aligned_cols=182  Identities=20%  Similarity=0.246  Sum_probs=119.4

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Eec--------------CCCCEEEEEeC--CEEE
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---ELH--------------ATEHYLITTVE--SVST   63 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~~--------------~~~~~~~~~~~--~~~~   63 (579)
                      +.+...|..+.+.+|++++|.|.+.+.  +...+.|||+.  .   .+.              ...++.+....  ...+
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST   81 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence            456778899999999999999999875  55689999943  2   110              23455554433  4789


Q ss_pred             EEEcCCCCCCCEEEEEEEEcCCe-----e--eEEEEEEEEEecccC-CCCC--ceecCCCceEEccCCcEEEEEEEEee-
Q psy16852         64 LEIINPTKEDIGVYTCKATNIGG-----V--ATCSANLIVLEKEES-GEAP--KFTKPLKPVIAEAQSPATLKATVTGR-  132 (579)
Q Consensus        64 L~i~~~~~~d~G~Y~C~~~~~~g-----~--~~~~~~~~v~~~~~~-~~~~--~~~~~~~~~~~~~g~~~~l~C~~~~~-  132 (579)
                      |+|.+++.+|+|.|+|.+.+...     .  ....+.|.|...+.. ..+|  .+.. +....+.+|+.++|.|.+.++ 
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~~g~~  160 (242)
T 1hxm_B           82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL-PSIAETKLQKAGTYLCLLEKFF  160 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC-CCGGGGGSSSCEEEEEEEEEES
T ss_pred             EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC-CChhhcccCCCceEEEEEeeEE
Confidence            99999999999999999987521     1  122457777653210 0011  1221 233345679999999999887 


Q ss_pred             cC-CeEEEEECCE-EccCCC-CceEEEcC-CCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852        133 PT-PSICWYRGKE-EILPDN-GHTMEFNP-TTGECVLSISEATPQDEAVYSVKAVNTFGRAEC  191 (579)
Q Consensus       133 p~-~~i~W~~~~~-~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (579)
                      |. +.|.|++++. .+.... ......+. ......|.|..... + |.|+|.+.|..+....
T Consensus       161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~  221 (242)
T 1hxm_B          161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGV  221 (242)
T ss_dssp             SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGS
T ss_pred             CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCc
Confidence            54 7999999987 453221 11111000 00124688887765 4 9999999998776533

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.75  E-value=2.4e-17  Score=128.46  Aligned_cols=103  Identities=24%  Similarity=0.307  Sum_probs=92.7

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      ...||.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+|+|..+....++.+........|.|.+++.+|+|.|+|.|.
T Consensus         4 ~~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (114)
T 2cqv_A            4 GSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   83 (114)
T ss_dssp             CCCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CCCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence            45799999999999999999999999999999999999999999988888888777778899999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEecccCCCC
Q psy16852         83 NIGGVATCSANLIVLEKEESGEA  105 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~~~~~~  105 (579)
                      |..|.....+.|.|.+.+.++..
T Consensus        84 N~~g~~~~~~~l~V~~~p~~P~~  106 (114)
T 2cqv_A           84 NKLGSRQAQVNLTVVDKPDPPAG  106 (114)
T ss_dssp             CSSCEEECCEEEEEECSCSCCCC
T ss_pred             ECCCcEEEEEEEEEECCCCCCCC
Confidence            99999988999999887654433

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.75  E-value=2.2e-15  Score=158.30  Aligned_cols=352  Identities=14%  Similarity=0.137  Sum_probs=205.6

Q ss_pred             CCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCC-CCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy16852        120 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEAT-PQDEAVYSVKAVNTFGRAECRANLVLR  198 (579)
Q Consensus       120 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~~v~  198 (579)
                      +..+.|.|.+.|.|.+.+.|.+++..+....           ...+.|..+. ...++.|+|.+.+..|...... +.+.
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~-----------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~-v~~~  158 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWN-----------RAELAISTFWPNFYQVIFEVITSGHQGYLAIDE-VKVL  158 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCE-----------EEEEEECCCTTSCEEEEEEEEECSSCCEEEECC-BEEE
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCcee-----------EEEEEEeecCCCceEEEEEEEecCCceEEEEee-EEee
Confidence            4589999999999999999999987653211           1246666542 3334788898777777544321 1111


Q ss_pred             eccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEE-EE--ECCEEeccCceEEe---CCeEEEEEcccC
Q psy16852        199 KATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVK-WF--KNGKEIVSKDIETK---DNVTKLVIKQTT  272 (579)
Q Consensus       199 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~-W~--~~~~~i~~~~~~~~---~~~~~l~i~~~~  272 (579)
                      .      .....+|.+. .+....+.+|+.+.|.|.+.|.|.+.+. |+  ++|+.+........   .....|.|.++.
T Consensus       159 ~------~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~  231 (731)
T 2v5y_A          159 G------HPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTT  231 (731)
T ss_dssp             S------SCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCC
T ss_pred             e------cccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccc
Confidence            1      0123456665 4456788999999999999999999887 88  67776654321111   124689999999


Q ss_pred             CCCCeEEEEEEEcCCee-eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeee-CCC--eEEEEECCEEc
Q psy16852        273 KKTTGKYEIRVVNEAGE-ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK-PTP--LVTWSHDGTPM  348 (579)
Q Consensus       273 ~~d~G~y~C~a~n~~g~-~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-p~~--~i~W~~~~~~~  348 (579)
                      ..|.|.|+|.|.|..|. ......+.|...+.....+...........+.|....    ..|. |..  .+.|...+.  
T Consensus       232 ~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~----~~g~~~i~~Y~v~~~~~~~--  305 (731)
T 2v5y_A          232 KRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANS----INGDGPIVAREVEYCTASG--  305 (731)
T ss_dssp             TTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSS----BSSCSCCCEEEEEEEESSS--
T ss_pred             cccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcc----cCCCCccEEEEEEEEECCC--
Confidence            99999999999999997 5556677776554432222222223334445553321    1121 111  466655421  


Q ss_pred             cCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEE--cCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeE
Q psy16852        349 KEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAV--NPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPAT  426 (579)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~  426 (579)
                         ..........  ..+.|.++...+.+.|+|.|.  |..|....+..+.+......  +             .+.+..
T Consensus       306 ---~~~~~~~~~~--~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~--p-------------~~~P~~  365 (731)
T 2v5y_A          306 ---SWNDRQPVDS--TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCAD--P-------------MRGPRK  365 (731)
T ss_dssp             ---SCEEEEECCS--SEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCC--C-------------SCCCEE
T ss_pred             ---CceEEeccCc--ceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCC--C-------------CCCCce
Confidence               1222222222  378999999999999999999  99987765544444432110  0             111223


Q ss_pred             EEEEEEeeCCCeEEEeeCCEEcCC--CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEee
Q psy16852        427 LKATVTGRPTPSICWYRGKEEILP--DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISK  504 (579)
Q Consensus       427 l~C~~~g~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~  504 (579)
                      |...........+.|.........  ...+.+.+....           ......+.      ...+........++|.+
T Consensus       366 ~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~-----------~~~~~~~~------~~~~~~~~~~~~~~i~~  428 (731)
T 2v5y_A          366 LEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQV-----------GGQEQVRE------EVSWDTENSHPQHTITN  428 (731)
T ss_dssp             EEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEES-----------SSSEEEEE------EEECCSSCSSCEEEECS
T ss_pred             eEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEcc-----------CCCCccce------eEEEEecCCcceEEECC
Confidence            333333333446777654221111  112222211000           00000000      00112234455688999


Q ss_pred             cccccceeEEEEEEeCCeeEEEEEEEEEee
Q psy16852        505 ITRDQIGDVTCRAENVAGSVTCTATLSLLP  534 (579)
Q Consensus       505 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  534 (579)
                      +.......|+..|.|..|... +..+.+..
T Consensus       429 L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T  457 (731)
T 2v5y_A          429 LSPYTNVSVKLILMNPEGRKE-SQELIVQT  457 (731)
T ss_dssp             CCSSCEEEEEEEEECSSCEEE-CCCEEEEC
T ss_pred             CCCCCEEEEEEEEEcCCCCCC-CceEEEEc
Confidence            999999999999999999864 55566553

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.75  E-value=2.4e-17  Score=151.44  Aligned_cols=183  Identities=17%  Similarity=0.217  Sum_probs=122.2

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EE---e----------c----CCCCEEEEEe-CCEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TE---L----------H----ATEHYLITTV-ESVSTLE   65 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~---~----------~----~~~~~~~~~~-~~~~~L~   65 (579)
                      .+.+...|.++.+.+|++++|.|.+.+.+.+.+.|||++  ..   +          .    ...++.+... ....+|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            466777889999999999999999977777799999964  11   1          0    1235554432 4567999


Q ss_pred             EcCCCCCCCEEEEEEEEcCCe------eeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cC-Ce
Q psy16852         66 IINPTKEDIGVYTCKATNIGG------VATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PT-PS  136 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~~g------~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~  136 (579)
                      |.+++.+|+|.|+|.+.+..+      .....+.+.|........+|.+.. .+....+.+|+.++|.|.+.+. |+ +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999998321      112335677765322223444432 2233334579999999999887 43 69


Q ss_pred             EEEEECCEEccCCCCce---EE-Ec-CCCC----eEEEEECcCCCCC-CeEEEEEEEcCCce
Q psy16852        137 ICWYRGKEEILPDNGHT---ME-FN-PTTG----ECVLSISEATPQD-EAVYSVKAVNTFGR  188 (579)
Q Consensus       137 i~W~~~~~~~~~~~~~~---~~-~~-~~~~----~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  188 (579)
                      |.|++++..+.......   .. .. ..++    ...|.|......| .|.|+|.+.|....
T Consensus       184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            99999998875432110   00 00 0122    1358888887764 77899999987543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.75  E-value=6.3e-18  Score=149.86  Aligned_cols=175  Identities=13%  Similarity=0.127  Sum_probs=117.9

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc----------------CCCCceEEEcCCCCeEEEEECc
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL----------------PDNGHTMEFNPTTGECVLSISE  169 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~----------------~~~~~~~~~~~~~~~~~l~i~~  169 (579)
                      .++.+.+|+.++|.|.+.+.+  .+.+.||++.  ..   +.                ...+..+..+...+..+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            345778999999999998765  6899999853  11   10                0123344443345678999999


Q ss_pred             CCCCCCeEEEEEEEcCCc-----eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-e
Q psy16852        170 ATPQDEAVYSVKAVNTFG-----RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-E  242 (579)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~  242 (579)
                      ++.+|+|.|+|.+.+..+     .......+.|...       ...+|.+........+.+|+.++|.|.+.+. |.+ .
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  160 (222)
T 1q9r_B           88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAA-------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT  160 (222)
T ss_dssp             CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSS-------CCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCE
T ss_pred             CCcccCeEEEEEEeccCCcccceEeCCceEEEeccC-------CCCCCeEEEccccccccCCCcEEEEEEEccEECCCCE
Confidence            999999999999998653     1112234444321       1134554433322335689999999999985 888 9


Q ss_pred             EEEEECCEEeccCc--eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEE
Q psy16852        243 VKWFKNGKEIVSKD--IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGS  295 (579)
Q Consensus       243 v~W~~~~~~i~~~~--~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~  295 (579)
                      +.|+++|..+....  ..    .....+.|.|.++..+| |.|+|.|.|..|.......
T Consensus       161 v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~  218 (222)
T 1q9r_B          161 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK  218 (222)
T ss_dssp             EEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEe
Confidence            99999987653211  00    11223568999999889 9999999999887654443

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.75  E-value=3.3e-17  Score=145.06  Aligned_cols=174  Identities=11%  Similarity=0.157  Sum_probs=115.8

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---e---c-------------CCCCEEEEEe--CCEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---L---H-------------ATEHYLITTV--ESVSTL   64 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~---~-------------~~~~~~~~~~--~~~~~L   64 (579)
                      +..|.++.+.+|++|+|.|.+.+.+  ...+.|||..  ..   +   .             ...++.+...  ....+|
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (221)
T 3m8o_H            4 LVESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFL   83 (221)
T ss_dssp             EEEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEE
T ss_pred             EEccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEE
Confidence            3457788999999999999998643  4689999832  11   1   0             1245555443  456789


Q ss_pred             EEcCCCCCCCEEEEEEEEcCC--eeeEEEEEEEEEecccCCCCCcee-cCCCceEEccCCcEEEEEEEEe-ecC--CeEE
Q psy16852         65 EIINPTKEDIGVYTCKATNIG--GVATCSANLIVLEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTG-RPT--PSIC  138 (579)
Q Consensus        65 ~i~~~~~~d~G~Y~C~~~~~~--g~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~--~~i~  138 (579)
                      +|.+++.+|+|.|+|.+.+..  ......+.+.|...+  ..+|.+. ..+...  .+|+.++|.|.+.+ .|.  +.+.
T Consensus        84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~--~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~  159 (221)
T 3m8o_H           84 QMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS--PTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVT  159 (221)
T ss_dssp             EECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC--CBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEE
T ss_pred             EECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCC--CCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEE
Confidence            999999999999999998763  223334566665321  2234443 222222  68999999999987 665  4999


Q ss_pred             EEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        139 WYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       139 W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      |++++..+....... .....++    .+.|.|......|.|.|+|.|.|..+.
T Consensus       160 W~~~g~~~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          160 WSESGQGVTARNFPP-SQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             ESCCSTTCEEEECCC-EECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             EEECCEECceEEcCc-eeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            999886552110000 0000111    146999999999999999999998654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.75  E-value=1.2e-17  Score=151.46  Aligned_cols=174  Identities=13%  Similarity=0.120  Sum_probs=115.4

Q ss_pred             ceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc-------------CCCCceEEEcCCCCeEEEEECcCCCC
Q psy16852        114 PVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL-------------PDNGHTMEFNPTTGECVLSISEATPQ  173 (579)
Q Consensus       114 ~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~~  173 (579)
                      .+.+.+|+.++|.|.+.+.|  .+.|.||+++  .   .+.             ...++.+..+...+..+|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (257)
T 1f3r_B            9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (257)
T ss_dssp             CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred             CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence            45688999999999998875  6899999852  1   110             12334444443456789999999999


Q ss_pred             CCeEEEEEEEcCCc-------eeE--EEEEEEEeeccccC----CCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC
Q psy16852        174 DEAVYSVKAVNTFG-------RAE--CRANLVLRKATTID----KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT  240 (579)
Q Consensus       174 d~G~Y~C~~~~~~~-------~~~--~~~~~~v~~~~~~~----~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  240 (579)
                      |+|.|+|.+.+..|       ...  ....+.|.......    ......++.+...+....+.+|+.++|.|.+.+.+.
T Consensus        89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  168 (257)
T 1f3r_B           89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNIN  168 (257)
T ss_dssp             CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCB
T ss_pred             cCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCC
Confidence            99999999999853       111  12344443210000    000001122333345566889999999999998888


Q ss_pred             CeEEEEE--CCEEec-------------cCce--EEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        241 PEVKWFK--NGKEIV-------------SKDI--ETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       241 ~~v~W~~--~~~~i~-------------~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      +.+.|++  +|..+.             ....  ........|.|.+++.+|+|.|+|.|.|..
T Consensus       169 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          169 NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            8999999  554321             0111  112455689999999999999999999864

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.75  E-value=7.5e-18  Score=152.51  Aligned_cols=176  Identities=14%  Similarity=0.154  Sum_probs=118.4

Q ss_pred             ceecCCCceEEccCCcEEEEEEEEeec-----CCeEEEEECCE--E---cc-------CCCCceEEEcCCCCeEEEEECc
Q psy16852        107 KFTKPLKPVIAEAQSPATLKATVTGRP-----TPSICWYRGKE--E---IL-------PDNGHTMEFNPTTGECVLSISE  169 (579)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~~--~---~~-------~~~~~~~~~~~~~~~~~l~i~~  169 (579)
                      .+...+..+.+.+|++++|.|.+.+.+     .+.|.||+++.  .   +.       .....++......+..+|.|.+
T Consensus        36 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~  115 (252)
T 3bkj_L           36 LMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISR  115 (252)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             EEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECC
Confidence            344456677889999999999998877     58999999541  1   10       1111222222234567899999


Q ss_pred             CCCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEE
Q psy16852        170 ATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWF  246 (579)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~  246 (579)
                      ++.+|+|.|+|.+.+..+... ....+.|..        ...+|.+...+....+.+|+.++|.|.+.+ .|.+ .+.|+
T Consensus       116 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~--------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  187 (252)
T 3bkj_L          116 VEAEDLGVYYCFQASLVPLTFGAGTKLELKR--------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK  187 (252)
T ss_dssp             CCGGGCEEEEEEECSBSSCEECCCEEEEECC--------CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CCcccCEEEEEEEEcCCccEECCCEEEEEeC--------CCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEE
Confidence            999999999999988754321 122344431        113455554333223346899999999998 4554 89999


Q ss_pred             ECCEEeccC-ceE---------EeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        247 KNGKEIVSK-DIE---------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       247 ~~~~~i~~~-~~~---------~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                      ++|..+... ...         .....+.|.|.++..+|+|.|+|.|.|.....
T Consensus       188 k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          188 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             ETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            999988655 100         01123568999999999999999999987553

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.74  E-value=2.1e-17  Score=149.51  Aligned_cols=178  Identities=17%  Similarity=0.173  Sum_probs=117.1

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EEe------c-----------CCCCEEEEEe--CCEEEEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TEL------H-----------ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~~------~-----------~~~~~~~~~~--~~~~~L~   65 (579)
                      .+..|.++.+.+|++++|.|.+.+.+  .+.+.|||+.  ..+      .           ...++.+...  ....+|+
T Consensus         9 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   88 (261)
T 2xqy_G            9 QLQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQ   88 (261)
T ss_dssp             EEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             eEECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEE
Confidence            34457889999999999999998765  5689999963  211      0           1245555443  3568999


Q ss_pred             EcCCCCCCCEEEEEEEEcCCe-e--eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEE
Q psy16852         66 IINPTKEDIGVYTCKATNIGG-V--ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWY  140 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~~g-~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~  140 (579)
                      |.+++.+|+|.|+|.+.+..+ .  ....+.|.|....  ..+|.+........+.+|+.++|.|.+.+. |.+ .|.|+
T Consensus        89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~  166 (261)
T 2xqy_G           89 LSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK--TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN  166 (261)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--CBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             EcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCC--CCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEe
Confidence            999999999999999998642 1  1133567775421  123443322222235679999999999875 665 99999


Q ss_pred             ECCEEccCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        141 RGKEEILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       141 ~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      +++..+........... .....+.|.|..+..+| |.|+|.+.|.....
T Consensus       167 k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~  215 (261)
T 2xqy_G          167 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  215 (261)
T ss_dssp             GGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             cCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCc
Confidence            98865421111111111 00112579999988888 99999999876543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.74  E-value=2.3e-17  Score=139.57  Aligned_cols=157  Identities=17%  Similarity=0.285  Sum_probs=108.3

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEE--CCEEc----------cCCCeEEEEECCCCeE
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSH--DGTPM----------KEGKEVTIYQDTDGLC  364 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~--~~~~~----------~~~~~~~~~~~~~~~~  364 (579)
                      .|....|+.+.|.|....                 .+.+.+.|.|++  ++..+          ....++.+.  .++  
T Consensus         8 ~v~g~~G~sv~L~~~~~~-----------------~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~--~ng--   66 (182)
T 1hnf_A            8 ETWGALGQDINLDIPSFQ-----------------MSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF--KNG--   66 (182)
T ss_dssp             EEEEETTSCEEECCTTCC-----------------CCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC--TTS--
T ss_pred             EEEEecCCCEEEeCCccc-----------------ccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC--CCC--
Confidence            355667788888873211                 122345788888  77665          234444443  233  


Q ss_pred             EEEEcccCCCCCEEEEEEEEcCceeEE--EEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEe
Q psy16852        365 KLAISEVFPENAGLYSCTAVNPVGEAV--AAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWY  442 (579)
Q Consensus       365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~  442 (579)
                      +|.|.+++.+|+|.|+|.|.|..|...  ..+.|.|...   ...|.+..        .+..++|+|.+.+.|.+.+.|+
T Consensus        67 sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~---~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~  135 (182)
T 1hnf_A           67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER---VSKPKISW--------TCINTTLTCEVMNGTDPELNLY  135 (182)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECC---CCCCEEEE--------ETTTTEEEEECSSCSSCEEEEE
T ss_pred             CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCc---CCCCEEEE--------ccCcEEEEeEccCCCCCEEEEE
Confidence            799999999999999999999888654  4556777642   12444432        2447999999999999999999


Q ss_pred             eCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      ++|..+ ....                                            ..|.+. ...+|+|.|+|.|.|..|
T Consensus       136 ~~g~~l-~~~~--------------------------------------------~~i~~~-~~~~d~G~Y~C~a~N~~~  169 (182)
T 1hnf_A          136 QDGKHL-KLSQ--------------------------------------------RVITHK-WTTSLSAKFKCTAGNKVS  169 (182)
T ss_dssp             ESSCEE-EEES--------------------------------------------SCEEEE-CCSCEEEEEEEEEECSSC
T ss_pred             ECCEEC-CCCC--------------------------------------------cEEEEe-cccCCCcEEEEEEEeCCC
Confidence            998776 1100                                            012222 246889999999999999


Q ss_pred             eEEEEEEEE
Q psy16852        523 SVTCTATLS  531 (579)
Q Consensus       523 ~~~~~~~l~  531 (579)
                      .......+.
T Consensus       170 ~~~s~~~~~  178 (182)
T 1hnf_A          170 KESSVEPVS  178 (182)
T ss_dssp             EEEEEEEEE
T ss_pred             CcEEcceec
Confidence            988777664

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.74  E-value=1.4e-17  Score=150.88  Aligned_cols=259  Identities=10%  Similarity=0.040  Sum_probs=100.0

Q ss_pred             CCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852        112 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAEC  191 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (579)
                      +....+.+|+.+.|.|.+....+..+.|...-.....       .........+.+.++..+  |.|+|++.........
T Consensus         6 P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~-------~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~   76 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKEL-------LLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTA   76 (291)
T ss_dssp             CSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCC-------CCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEE
T ss_pred             CCccEEcCCCeEEEEEeCCCCCCccceEEecCCCccc-------ccCCCceEEEEEEecccC--CeEEEEEEcCCccEEE
Confidence            3456789999999999986433345888532110000       001112235788888753  4699999755333333


Q ss_pred             EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC--eEEEEECCEEeccCceEEeCCeEEEEE
Q psy16852        192 RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP--EVKWFKNGKEIVSKDIETKDNVTKLVI  268 (579)
Q Consensus       192 ~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~v~W~~~~~~i~~~~~~~~~~~~~l~i  268 (579)
                      ...+.+.  ..+.      .+.+  .+....+.+|+.++|.|.+.+. |..  +|.|+|+++.+.............|.+
T Consensus        77 ~v~l~V~--~~P~------~v~I--~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~  146 (291)
T 1mq8_A           77 KTFLTVY--WTPE------RVEL--APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV  146 (291)
T ss_dssp             ECEEEEC--BCCS------CCCB--CCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEEC
T ss_pred             EEEEEEe--cCCC------CCEE--ecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEe
Confidence            3344443  2111      1111  1222347789999999999874 544  589999998876433111223456777


Q ss_pred             cccCCCCCeEEEEEEEcCCee--------eEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCC---
Q psy16852        269 KQTTKKTTGKYEIRVVNEAGE--------ARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP---  337 (579)
Q Consensus       269 ~~~~~~d~G~y~C~a~n~~g~--------~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~---  337 (579)
                      .....++.+.|+|+|.+..+.        ......+.|...+.....+..     +..........+.|.+.|.|++   
T Consensus       147 ~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~-----p~~l~eG~~v~l~C~~~g~~P~~~~  221 (291)
T 1mq8_A          147 LVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS-----PRVLEVDTQGTVVCSLDGLFPVSEA  221 (291)
T ss_dssp             CCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------------------------
T ss_pred             eeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecC-----CcCccCCCeEEEEEEcCCCCCCccc
Confidence            777777788999999986542        122234444433322222211     1112233445556889997654   


Q ss_pred             eEEEEECCEEccCCCeEEEEECCCCeEEEEEccc---CCC--CCEEEEEEEEcCceeEEEEEEEEEEec
Q psy16852        338 LVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEV---FPE--NAGLYSCTAVNPVGEAVAAATLAVEEK  401 (579)
Q Consensus       338 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~--d~G~Y~C~a~n~~g~~~~~~~l~v~~~  401 (579)
                      .+.|.++|+.+.....    .+++   .+.+...   ..+  +.+.|+|.|.+..........|.|...
T Consensus       222 ~v~w~~~g~~l~~~~~----~~g~---~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~  283 (291)
T 1mq8_A          222 QVHLALGDQRLNPTVT----YGND---SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF  283 (291)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             EEEEEECCEecCceee----ecCC---eEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcC
Confidence            6999999998875321    1111   2333322   233  356788998876555666777777664

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.74  E-value=4.7e-18  Score=147.73  Aligned_cols=147  Identities=14%  Similarity=0.203  Sum_probs=95.7

Q ss_pred             CCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEec-------------
Q psy16852        335 PTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK-------------  401 (579)
Q Consensus       335 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~-------------  401 (579)
                      |.+.+.|+|+|..+...      ...  ...|.|.++..+|+|.|+|.+.+..+   ..+.|.+...             
T Consensus        28 p~~~i~W~k~g~~l~~~------~~~--~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~~~~~~~~~~~~~~~~   96 (204)
T 1sy6_A           28 EAKNITWFKDGKMIGFL------TED--KKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYRMGSADDAKKDAAKKD   96 (204)
T ss_dssp             CSSEEEEEETTEEEEEE------ESS--CCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEEC--------------
T ss_pred             CCCEEEEEECCEECCCC------CCC--CCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEEEeccccccccccccc
Confidence            56789999999887532      111  22799999999999999999755322   2234444300             


Q ss_pred             ------------ccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCC-eeEEEcCCCCeEEEE
Q psy16852        402 ------------EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNG-HTMEFNPTTGECVLS  468 (579)
Q Consensus       402 ------------~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~~~l~  468 (579)
                                  .....++.+...+ .....+|+.++|.|.  |.|.|.+.|++++..+....+ ..+..          
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~----------  163 (204)
T 1sy6_A           97 DAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS----------  163 (204)
T ss_dssp             ----------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE----------
T ss_pred             cccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec----------
Confidence                        0000022222222 122238999999999  789999999999998854321 11110          


Q ss_pred             EccccCCCceeEEEEeecceeeeeeeCCeeEEEEeec-ccccceeEEEEEEeCCee-EEEEEEEEE
Q psy16852        469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI-TRDQIGDVTCRAENVAGS-VTCTATLSL  532 (579)
Q Consensus       469 i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~n~~g~-~~~~~~l~v  532 (579)
                                                 ..+.|+|.++ +.+|+|.|+|.|.|..|. .+..+.|+|
T Consensus       164 ---------------------------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          164 ---------------------------DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             ---------------------------ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             ---------------------------CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence                                       1345999999 999999999999999996 345555554

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.74  E-value=2.1e-17  Score=148.67  Aligned_cols=175  Identities=13%  Similarity=0.217  Sum_probs=103.6

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EE---e---c-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TE---L---H-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~---~---~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|||..  ..   +   .           ...++.+...  .+...|+|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (257)
T 3bn9_D            5 VQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMS   84 (257)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEE
T ss_pred             EccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEEC
Confidence            457778999999999999998765  5689999853  11   1   0           1345555543  456899999


Q ss_pred             CCCCCCCEEEEEEEEcCCe----------e---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c
Q psy16852         68 NPTKEDIGVYTCKATNIGG----------V---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P  133 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g----------~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p  133 (579)
                      +++.+|+|.|+|.+.+..|          .   ....+.|.|...+  ..+|.+........+.+|+.++|.|.+.+. |
T Consensus        85 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~--~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P  162 (257)
T 3bn9_D           85 SLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  162 (257)
T ss_dssp             SCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC--CBCCEECCCCC-----------CCCEEEEEBS
T ss_pred             CCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC--CcCCcEEEecCcccccCCCcEEEEEEEeeEEC
Confidence            9999999999999998654          1   1123567775421  223444332222235679999999999886 7


Q ss_pred             CC-eEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeE
Q psy16852        134 TP-SICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAE  190 (579)
Q Consensus       134 ~~-~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (579)
                      .+ .|.|++++..+........ .. .++    .+.|.|..+..+| |.|+|.+.|......
T Consensus       163 ~pi~v~W~k~g~~~~~~~~~~~-~~-~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~  221 (257)
T 3bn9_D          163 EPVTVSWNSGALTSGVHTFPAV-LQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  221 (257)
T ss_dssp             SCCEEEETTTTCCSSCEECCCE-EC-TTSCEEEEEECCCC--------CEEEEEEEGGGTEE
T ss_pred             CCcEEEEeeCCCcCCcEecCCe-Ec-CCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence            66 9999998875321100001 11 112    2467888888778 999999999765443

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.74  E-value=2.4e-17  Score=145.13  Aligned_cols=175  Identities=18%  Similarity=0.230  Sum_probs=112.6

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--EEe---c-------------CCCCEEEEEe--CCEEEEEEcC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--TEL---H-------------ATEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~~~---~-------------~~~~~~~~~~--~~~~~L~i~~   68 (579)
                      ..|.++.+.+|++++|.|.+.+.+  .+.+.|||+.  ...   .             ...++.+...  .+..+|+|.+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (215)
T 1c5d_H            5 LESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNS   84 (215)
T ss_dssp             EEECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESS
T ss_pred             EcCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECC
Confidence            357888999999999999998754  4689999853  211   0             1234544432  3467999999


Q ss_pred             CCCCCCEEEEEEEEcCCee---eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cCC-eEEEEECC
Q psy16852         69 PTKEDIGVYTCKATNIGGV---ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGK  143 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~  143 (579)
                      ++.+|+|.|+|.+.+..+.   ....+.|.|....  +.+|.+........+.+|+.++|.|.+.+. |.+ .|.|++++
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  162 (215)
T 1c5d_H           85 LQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ--TTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGA  162 (215)
T ss_dssp             CCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSC--CBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCcccCEEEEEEEecCCcccceEcCCEEEEecCCC--CCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCC
Confidence            9999999999999876421   2233567776321  223444332222234689999999999887 777 99999987


Q ss_pred             EEccCCCCceEEEcCCCCeEEE--EECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852        144 EEILPDNGHTMEFNPTTGECVL--SISEATPQDEAVYSVKAVNTFGRAEC  191 (579)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~l--~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (579)
                      ..+......... +.  +...+  .+.....+| |.|+|.+.|..+....
T Consensus       163 ~~~~~~~~~~~~-~~--g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~  208 (215)
T 1c5d_H          163 LSSDVHTFPAVL-QS--GLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV  208 (215)
T ss_dssp             TCCSCCBCCCEE-ET--TEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred             ccCceEecCccc-CC--CCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence            653211111111 11  22221  122444456 9999999998876543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.74  E-value=1.1e-17  Score=148.72  Aligned_cols=178  Identities=15%  Similarity=0.179  Sum_probs=117.9

Q ss_pred             CceEEccCCcEEEEEEEEeecCC---eEEEEECCEEccC--------------CCCceEEE-------cCCCCeEEEEEC
Q psy16852        113 KPVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILP--------------DNGHTMEF-------NPTTGECVLSIS  168 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~~~--------------~~~~~~~~-------~~~~~~~~l~i~  168 (579)
                      ..+.+..|++++|.|.+.+.+.+   .|.|+|++..+..              ........       ....+.++|.|.
T Consensus         9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            45678899999999999876665   4899997643210              00111111       112344679999


Q ss_pred             cCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEE-ccCCCeEEEEE
Q psy16852        169 EATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFK  247 (579)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~  247 (579)
                      +++.+|+|.|+|.+.+..+...........          ..+|.....+.......+..+.+.|.+. +.|++.+.|++
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~  158 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRV----------IAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWIS  158 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEE----------EBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEEC
T ss_pred             cCCHHHCcceEEEEEeCCCcceeeeeeeee----------ecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEE
Confidence            999999999999998876655443322221          1334444344444566677777777655 57888999999


Q ss_pred             CCEEeccCceEE------eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852        248 NGKEIVSKDIET------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV  300 (579)
Q Consensus       248 ~~~~i~~~~~~~------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~v~~  300 (579)
                      ++..+.......      ....+.|.|.++..+|+|.|+|.|.|..+....+..+.|.|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V  217 (225)
T 4fmk_A          159 SLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSV  217 (225)
T ss_dssp             SSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCB
T ss_pred             CCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEE
Confidence            876544322111      11235799999999999999999999988776666665543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.73  E-value=7.8e-17  Score=146.19  Aligned_cols=175  Identities=10%  Similarity=0.129  Sum_probs=116.6

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---c--------------cCCCCceEEEcCCCCeEEEEECcCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---I--------------LPDNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~--------------~~~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      ..+.+.+|++++|.|.+.+.+  .+.+.||+..  ..   +              ....++.+..+...+..+|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            446688999999999998765  5899999842  11   1              0113344444444556789999999


Q ss_pred             CCCCeEEEEEEEcC----CceeEEEEEEEEeecccc----CCCCcc-CCCeEeccCCceeeCCCCeEEEEEEEEccCCCe
Q psy16852        172 PQDEAVYSVKAVNT----FGRAECRANLVLRKATTI----DKPRVL-EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPE  242 (579)
Q Consensus       172 ~~d~G~Y~C~~~~~----~~~~~~~~~~~v~~~~~~----~~~~~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  242 (579)
                      .+|+|.|+|.+.+.    .+.......+.|......    ....+. .+|.+...+....+.+|+.++|.|.+.+.+.+.
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~  169 (256)
T 3umt_A           90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSN  169 (256)
T ss_dssp             GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTC
T ss_pred             cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcE
Confidence            99999999999887    222222344444321000    000000 155666666777899999999999999988889


Q ss_pred             EEEEEC--CEEec-------------cCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        243 VKWFKN--GKEIV-------------SKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       243 v~W~~~--~~~i~-------------~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      +.|+++  +....             ...  .........|.|.+++.+|+|.|+|.|.+..
T Consensus       170 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  231 (256)
T 3umt_A          170 LNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASS  231 (256)
T ss_dssp             EEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSS
T ss_pred             EEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCC
Confidence            999983  22111             011  1223455679999999999999999998754

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.73  E-value=1.6e-17  Score=147.47  Aligned_cols=133  Identities=16%  Similarity=0.200  Sum_probs=94.0

Q ss_pred             eEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEE-EeeCCCeEEE
Q psy16852        363 LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICW  441 (579)
Q Consensus       363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W  441 (579)
                      ...|.|.+++.+|+|.|+|.+.+. +.....+.|.|...+   ..|.+...+ ...+..|+.++|.|.+ .|.|.|.+.|
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~---~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W  145 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQ-DFDSAAVSLQVAAPY---SKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFW  145 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEEC-CCCCCCCCCCCCBCC---CCCEEECCC------CCSEEEEEEEEEEEBSCCEEEE
T ss_pred             eEEEEECCcccccCEEEEEEEEeC-CCceEEEEEEEEcCC---CCCcEEeCC-CceecCCceEEEEEecccccCCCeEEE
Confidence            447999999999999999999986 344455566665432   346665443 3467789999999999 7899999999


Q ss_pred             eeC-CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        442 YRG-KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       442 ~~~-~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      +++ +..+.........                                 ...++..+.|.|.++..+|+|.|+|.|.|.
T Consensus       146 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~  192 (222)
T 4i0k_A          146 KDGQGVPLTGNVTTSQM---------------------------------ANERGLFDVHSVLRVVLGANGTYSCLVRNP  192 (222)
T ss_dssp             ECTTSCBCCSEEEEEEE---------------------------------ECTTSCEEEEEEEEEECCTTCEEEEEEEET
T ss_pred             EcCCCccCCCCcceeEE---------------------------------cCCCCeEEEEEEEEEEeCCCCEEEEEEECC
Confidence            994 4433221111000                                 011233456889999999999999999999


Q ss_pred             CeeEEEEEEEEEe
Q psy16852        521 AGSVTCTATLSLL  533 (579)
Q Consensus       521 ~g~~~~~~~l~v~  533 (579)
                      .|....++.|.|.
T Consensus       193 ~g~~~~~~~l~V~  205 (222)
T 4i0k_A          193 VLQQDAHGSVTIT  205 (222)
T ss_dssp             TTTEEEEEEEECC
T ss_pred             CCCCceEEEEEEe
Confidence            9999999999864

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.73  E-value=1.3e-17  Score=153.14  Aligned_cols=178  Identities=16%  Similarity=0.217  Sum_probs=118.3

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--EEe------c-----------CCCCEEEEE--eCCEEE
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--TEL------H-----------ATEHYLITT--VESVST   63 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~~~------~-----------~~~~~~~~~--~~~~~~   63 (579)
                      +.+.. |.++.+.+|++|+|.|.+.+.  +.+.+.|||..  ...      .           ...++.+..  .....+
T Consensus         2 ~~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   80 (280)
T 3fku_X            2 VQLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAY   80 (280)
T ss_dssp             CCEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEE
T ss_pred             CeEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEE
Confidence            34555 888999999999999999765  45689999832  110      0           113454442  234678


Q ss_pred             EEEcCCCCCCCEEEEEEEEcC---------CeeeEEEEEEEEEeccc---------CCCCCceecCCCceEEccCCcEEE
Q psy16852         64 LEIINPTKEDIGVYTCKATNI---------GGVATCSANLIVLEKEE---------SGEAPKFTKPLKPVIAEAQSPATL  125 (579)
Q Consensus        64 L~i~~~~~~d~G~Y~C~~~~~---------~g~~~~~~~~~v~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~l  125 (579)
                      |.|.+++.+|+|.|+|.+.+.         .........+.|...+.         ...++.+...+. ..+.+|++++|
T Consensus        81 L~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L  159 (280)
T 3fku_X           81 MDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATL  159 (280)
T ss_dssp             EEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEE
T ss_pred             EEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEE
Confidence            999999999999999999886         12222345566654100         011334444444 78899999999


Q ss_pred             EEEEEe-ec-CCeEEEEECC--EEcc---C-------CCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCC
Q psy16852        126 KATVTG-RP-TPSICWYRGK--EEIL---P-------DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTF  186 (579)
Q Consensus       126 ~C~~~~-~p-~~~i~W~~~~--~~~~---~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  186 (579)
                      .|.+.+ .+ .+.+.||+..  ..+.   .       ....++..........|.|.+++.+|+|.|+|.+.+..
T Consensus       160 ~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          160 TCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             EEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            999977 33 3799999832  1111   0       00112222223456789999999999999999998865

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.73  E-value=8.7e-18  Score=147.51  Aligned_cols=172  Identities=15%  Similarity=0.194  Sum_probs=114.9

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEc---c-------------CCCCceEEEcCCCCeEEEEECcCCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEI---L-------------PDNGHTMEFNPTTGECVLSISEATP  172 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~---~-------------~~~~~~~~~~~~~~~~~l~i~~~~~  172 (579)
                      ..+.+.+|++++|.|.+.+.+  .+.+.||+++  ...   .             ...+..+..+...+..+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   87 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT   87 (210)
T ss_dssp             SCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCc
Confidence            445788999999999998765  3899999852  111   0             1233344333334567999999999


Q ss_pred             CCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEECCE
Q psy16852        173 QDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFKNGK  250 (579)
Q Consensus       173 ~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~  250 (579)
                      +|+|.|+|.+.+.. .......+.+...       ...+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++.
T Consensus        88 ~D~G~Y~C~~~~~~-~~~~~~~l~V~~~-------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  159 (210)
T 3d9a_H           88 EDTATYYCANWDGD-YWGQGTLVTVSAA-------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  159 (210)
T ss_dssp             GGCEEEEEEETTSS-CBCCCEEEEECCC-------CCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ccCEEEEEEEecCc-ccccceEEEeccC-------CCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCc
Confidence            99999999998853 1111234444311       1134554433323346789999999999986 888 999999887


Q ss_pred             Eecc---CceE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852        251 EIVS---KDIE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS  293 (579)
Q Consensus       251 ~i~~---~~~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~  293 (579)
                      .+..   ....   .....+.|.|.....+| |.|+|.|.|..|.....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          160 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            5321   1111   11124568999988877 99999999998875543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.73  E-value=4.6e-18  Score=151.20  Aligned_cols=181  Identities=15%  Similarity=0.119  Sum_probs=116.8

Q ss_pred             CCCccc-cccCceeeeCCCCEEEEEEEEee-CC-C-eeEEEECCEEe-cCCCCEEEEEeC----CEEEEEEcCCCCCCCE
Q psy16852          5 LAPRFI-EKIQPVVSHQEQPALFTCKVEGH-PL-P-TMTWQKDGTEL-HATEHYLITTVE----SVSTLEIINPTKEDIG   75 (579)
Q Consensus         5 ~~p~~~-~~p~~~~v~~G~~~~l~C~~~~~-~~-~-~v~W~~~g~~~-~~~~~~~~~~~~----~~~~L~i~~~~~~d~G   75 (579)
                      .+|.+. ..|....+.+|+.++|.|.+.+. |. + .++|+++|..+ ............    ....|.|.+++.+|+|
T Consensus        11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g   90 (231)
T 2w59_A           11 SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGE   90 (231)
T ss_dssp             -CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCC
Confidence            355544 56777888999999999999885 53 4 99999999877 332221111111    1357999999999999


Q ss_pred             EEEEEEEcCCeeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-c-CCeEEEEECCEEccCCCCc
Q psy16852         76 VYTCKATNIGGVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-P-TPSICWYRGKEEILPDNGH  152 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~  152 (579)
                      .|+|.+.|..+...  ..+.|........+|.+.. .+.... ..+..++|.|.+.++ | .+.|.|++++..+......
T Consensus        91 ~Y~C~~~~~~~~~~--~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~  167 (231)
T 2w59_A           91 RFTCTVQHEELPLP--LSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFV  167 (231)
T ss_dssp             CEEEEEECTTCSSC--EEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCE
T ss_pred             EEEEEEEcCCCCCc--eEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcccc
Confidence            99999998775432  3333422110112333322 222112 235679999999886 4 3799999999987654311


Q ss_pred             e--EEEcC-------CC-C----eEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        153 T--MEFNP-------TT-G----ECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       153 ~--~~~~~-------~~-~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      .  .....       .+ +    .+.|.|.....+|.|.|+|.|.|....
T Consensus       168 ~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          168 TTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             ECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             cCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            1  11110       11 2    256888888888899999999998654

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.73  E-value=6.7e-17  Score=145.20  Aligned_cols=188  Identities=14%  Similarity=0.207  Sum_probs=111.1

Q ss_pred             EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECC--EEc------------cCCCeEEEEECCCCe
Q psy16852        298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDG--TPM------------KEGKEVTIYQDTDGL  363 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~  363 (579)
                      +.+..|..+.|.|.+...+..               .+.+.+.|++++  ..+            ....++.... ..+.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~---------------~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~   74 (240)
T 1moe_A           11 LAVSLGQRATMSCRAGESVDI---------------FGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-SRTD   74 (240)
T ss_dssp             EEECTTSCEEEEEEESSCCEE---------------TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTE
T ss_pred             EEecCCCCEEEEEeCCCcccc---------------CCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe-cCCe
Confidence            456778888888875443300               003456666631  110            0123444433 3456


Q ss_pred             EEEEEcccCCCCCEEEEEEEEcCcee-EEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC--CeEE
Q psy16852        364 CKLAISEVFPENAGLYSCTAVNPVGE-AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSIC  440 (579)
Q Consensus       364 ~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~  440 (579)
                      .+|.|.++..+|+|.|+|.|.|..+. ......|.|...+....++.+...+....+.+|+.++|.|.+.|.|.  +.+.
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~  154 (240)
T 1moe_A           75 FTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMH  154 (240)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred             EEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEE
Confidence            68999999999999999999998653 33445677765432212333444556678999999999999999874  5999


Q ss_pred             EeeCC--EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee--eCCeeEEEEeecccccceeEEEE
Q psy16852        441 WYRGK--EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT--DGNRSVLLISKITRDQIGDVTCR  516 (579)
Q Consensus       441 W~~~~--~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~  516 (579)
                      |+++.  ..+    ...+.....++..  ..   .....++|         .+..  ....+.|+|.+++.+|+|.|+|.
T Consensus       155 W~k~~~g~~~----~~~~~~~~~~~~~--~~---~~~~~~r~---------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  216 (240)
T 1moe_A          155 WVKQRPEQGL----EWIGRIDPANGNS--KY---VPKFQGKA---------TITADTSSNTAYLQLTSLTSEDTAVYYCA  216 (240)
T ss_dssp             EEEECTTSCC----EEEEEEETTTTEE--EE---CGGGTTTE---------EEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEECCCCCc----EEEEEEcccCCcc--cc---CccccccE---------EEEEcccCCEEEEEECcCCHHHCEEEEEE
Confidence            99952  111    0000000001100  00   00011122         2222  24557799999999999999999


Q ss_pred             EEe
Q psy16852        517 AEN  519 (579)
Q Consensus       517 a~n  519 (579)
                      |.+
T Consensus       217 a~~  219 (240)
T 1moe_A          217 PFG  219 (240)
T ss_dssp             ECS
T ss_pred             EEe
Confidence            984

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.73  E-value=1.1e-16  Score=145.11  Aligned_cols=183  Identities=10%  Similarity=0.127  Sum_probs=122.9

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEee--cCCeEEEEECC--EE---c------------c--CCCCceEEEcCCCCeE
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGR--PTPSICWYRGK--EE---I------------L--PDNGHTMEFNPTTGEC  163 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~~---~------------~--~~~~~~~~~~~~~~~~  163 (579)
                      ++.+...+..+.+.+|++++|.|.+.+.  +.+.+.||+..  ..   +            .  ...+..+..+...+..
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            4566667888999999999999999873  66899999742  10   0            0  1124444444556678


Q ss_pred             EEEECcCCCCCCeEEEEEEEcC------------CceeEEEEEEEEeeccccCCC----CccCCCeEeccCCceeeCCCC
Q psy16852        164 VLSISEATPQDEAVYSVKAVNT------------FGRAECRANLVLRKATTIDKP----RVLEAPTIVRPLQALLVPKDS  227 (579)
Q Consensus       164 ~l~i~~~~~~d~G~Y~C~~~~~------------~~~~~~~~~~~v~~~~~~~~~----~~~~~p~~~~~~~~~~~~~g~  227 (579)
                      +|.|.+++.+|+|.|+|.+.+.            .+.......+.|........+    ....++.+...+....+.+|+
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            9999999999999999999886            222222334444321100000    000144566667777899999


Q ss_pred             eEEEEEEEEccCC-CeEEEEEC--CEEec-------------cCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        228 TVTLEAEYTGTPT-PEVKWFKN--GKEIV-------------SKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       228 ~~~l~C~~~~~p~-~~v~W~~~--~~~i~-------------~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      +++|.|.+.+.+. +.+.|++.  +....             ...  .........|.|.+++.+|+|.|.|.|.|..
T Consensus       166 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          166 RATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             CEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             CEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            9999999998776 79999982  22111             011  1223456689999999999999999998754

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.73  E-value=6.4e-17  Score=146.48  Aligned_cols=178  Identities=13%  Similarity=0.105  Sum_probs=118.8

Q ss_pred             cCCCceEEccCCcEEEEEEEEeec--CCeEEEEEC--CEE---c--------------cCCCCceEEEcCCCCeEEEEEC
Q psy16852        110 KPLKPVIAEAQSPATLKATVTGRP--TPSICWYRG--KEE---I--------------LPDNGHTMEFNPTTGECVLSIS  168 (579)
Q Consensus       110 ~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~--~~~---~--------------~~~~~~~~~~~~~~~~~~l~i~  168 (579)
                      ..+.++.+.+|+.++|.|.+.+.+  .+.+.||+.  +..   +              ....+..+..+...+..+|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            345667889999999999998744  689999982  111   1              0123445555555667889999


Q ss_pred             cCCCCCCeEEEEEEEcCCceeE-EEEEEEEeecccc----CCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC--
Q psy16852        169 EATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTI----DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP--  241 (579)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~----~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--  241 (579)
                      +++.+|+|.|+|.+.+..+... ....+.+......    ....+..+|.+...+....+.+|++++|.|.+.+.+.+  
T Consensus        86 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  165 (253)
T 3uzq_A           86 SLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYG  165 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETT
T ss_pred             CCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCC
Confidence            9999999999999998654432 2334444311000    00011234566666677789999999999999987776  


Q ss_pred             --eEEEEEC--CEEec----c---------Cc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        242 --EVKWFKN--GKEIV----S---------KD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       242 --~v~W~~~--~~~i~----~---------~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                        .+.|+++  +....    .         ..  .........|.|.+++.+|+|.|.|.|.|..
T Consensus       166 ~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~  230 (253)
T 3uzq_A          166 NSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEV  230 (253)
T ss_dssp             EECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence              8999984  22111    0         11  1223445689999999999999999998854

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.73  E-value=8e-17  Score=145.57  Aligned_cols=183  Identities=14%  Similarity=0.185  Sum_probs=116.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee--------------cCCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL--------------HATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~--------------~~~~~~~~~~~--~~~~~L~i~   67 (579)
                      ..|..+.+.+|++++|.|.+.+.  +...+.|||..  .   .+              ....++.+...  .+..+|+|.
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (253)
T 3liz_H            5 VESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMS   84 (253)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEEC
T ss_pred             EcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEEC
Confidence            45778999999999999999763  34579999832  1   11              01234544433  356789999


Q ss_pred             CCCCCCCEEEEEEEEcCC----eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC-eEEEEE
Q psy16852         68 NPTKEDIGVYTCKATNIG----GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP-SICWYR  141 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~----g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~  141 (579)
                      +++.+|+|.|+|.+.+..    ......+.+.|...  ...+|.+........+..|+.++|.|.+.+ +|.+ .+.|++
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  162 (253)
T 3liz_H           85 SLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAA--KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (253)
T ss_dssp             SCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSS--CCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCChhhCEEEEEEEecCCcceeeEECCCEEEEEecc--CCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence            999999999999998752    22233456666521  123444443333334557999999999987 5655 999999


Q ss_pred             CCEEccCCCCceEEEc-CCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy16852        142 GKEEILPDNGHTMEFN-PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV  196 (579)
Q Consensus       142 ~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~  196 (579)
                      ++..+........... .....+.|.|.....+| |.|+|.+.|..+.......+.
T Consensus       163 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~  217 (253)
T 3liz_H          163 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  217 (253)
T ss_dssp             GTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             CCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEec
Confidence            8863311000001110 00012579999999999 999999999987665554443

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.72  E-value=1.2e-17  Score=148.85  Aligned_cols=180  Identities=16%  Similarity=0.150  Sum_probs=111.4

Q ss_pred             CCccccccCcee--eeCCCCEEEEEEEEee---CCC-eeEEEECCEEecCCCC-EEEEEe----CCEEEEEEcCCCCCCC
Q psy16852          6 APRFIEKIQPVV--SHQEQPALFTCKVEGH---PLP-TMTWQKDGTELHATEH-YLITTV----ESVSTLEIINPTKEDI   74 (579)
Q Consensus         6 ~p~~~~~p~~~~--v~~G~~~~l~C~~~~~---~~~-~v~W~~~g~~~~~~~~-~~~~~~----~~~~~L~i~~~~~~d~   74 (579)
                      +|.+...|....  +.+|+.++|.|.+.+.   |.+ .|.|||++..+..... ......    .....|.|.+++.+|+
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~   94 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNG   94 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCC
Confidence            455545455544  8899999999999887   665 8999999876642210 000000    1236799999999999


Q ss_pred             EEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCCCc
Q psy16852         75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGH  152 (579)
Q Consensus        75 G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~  152 (579)
                      |.|+|.+.+..+.......+..  ......+|.+...+.......|+.++|.|.+.|+ |+ ..|.|++++..+......
T Consensus        95 g~Y~C~~~~~~~~~~~~~~v~~--~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~  172 (239)
T 1i1c_A           95 KTFKCKVNSGAFPAPIEKSISK--PEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNT  172 (239)
T ss_dssp             CCEEEEEECSSSSSCEEEEECC--CSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred             CeEEEEEecccCCCCcEEEEec--CCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceec
Confidence            9999999998775322222211  1111234444332222222358899999999885 44 489999999987532111


Q ss_pred             eEEEcCCCCe----EEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        153 TMEFNPTTGE----CVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       153 ~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      ..... .++.    ..|.|.....+|.|.|+|.|.|....
T Consensus       173 ~~~~~-~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          173 PPTMD-TDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             CCEEC-TTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CceEC-CCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            11111 1222    23555555556799999999998644

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.72  E-value=6.5e-17  Score=143.07  Aligned_cols=175  Identities=14%  Similarity=0.178  Sum_probs=117.5

Q ss_pred             CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc---C-------------CCCceEEEcCCCCeEEEEEC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL---P-------------DNGHTMEFNPTTGECVLSIS  168 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~---~-------------~~~~~~~~~~~~~~~~l~i~  168 (579)
                      +..+.+.+|++++|.|.+.+.+  .+.+.||+++  ..   +.   .             ..+..+..+...+..+|.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            3456788999999999998765  6899999853  11   10   0             12333433334456799999


Q ss_pred             cCCCCCCeEEEEEEEcCCcee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eE
Q psy16852        169 EATPQDEAVYSVKAVNTFGRA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EV  243 (579)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v  243 (579)
                      +++.+|+|.|+|.+.+..+.. .  ....+.|...       ...+|.+...+....+.+|+.++|.|.+.+. |.+ .+
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  159 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSA-------TTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTV  159 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSS-------CCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEE
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEccC-------CCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEE
Confidence            999999999999999875322 1  2234444321       1134554433333346789999999999986 888 99


Q ss_pred             EEEECCEEe---ccCce---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEE
Q psy16852        244 KWFKNGKEI---VSKDI---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG  294 (579)
Q Consensus       244 ~W~~~~~~i---~~~~~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~  294 (579)
                      .|++++...   .....   ......+.|.|.+...++ |.|+|.|.|..|....++
T Consensus       160 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          160 KWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             EEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            999988631   11111   111234678999988866 999999999998655443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.72  E-value=2.2e-16  Score=139.66  Aligned_cols=174  Identities=14%  Similarity=0.195  Sum_probs=115.7

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc--------------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL--------------PDNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      .++.+.+|++++|.|.+.+.+  .+.+.||+..  .   .+.              ...++.+..+...+..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            456788999999999998765  4789999853  1   110              112334444444567899999999


Q ss_pred             CCCCeEEEEEEEcCCc---ee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eE
Q psy16852        172 PQDEAVYSVKAVNTFG---RA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EV  243 (579)
Q Consensus       172 ~~d~G~Y~C~~~~~~~---~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v  243 (579)
                      .+|+|.|+|.+.+..+   .. .  ....+.|...       ...+|.+........+..|+.++|.|.+.+. |.+ .+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  160 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSG-------SASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITF  160 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSS-------CCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEE
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEccC-------CCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEE
Confidence            9999999999998653   11 1  1234444310       1134444422112235689999999999986 777 99


Q ss_pred             EEEE-CCEEeccCc----e---EEeCCeEEEEEcccCC--CCCeEEEEEEEcCCeeeEEE
Q psy16852        244 KWFK-NGKEIVSKD----I---ETKDNVTKLVIKQTTK--KTTGKYEIRVVNEAGEARTS  293 (579)
Q Consensus       244 ~W~~-~~~~i~~~~----~---~~~~~~~~l~i~~~~~--~d~G~y~C~a~n~~g~~~~~  293 (579)
                      .|++ +|..+....    .   ......+.|.|.....  +|.|.|+|.|.|..+.....
T Consensus       161 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          161 SWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             EEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             EeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence            9999 888775410    0   0111235688877776  78999999999998876544

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=9.4e-17  Score=147.71  Aligned_cols=176  Identities=13%  Similarity=0.165  Sum_probs=117.9

Q ss_pred             CCCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc--------------CCCCceEEEcCCCCeEEEEECc
Q psy16852        111 PLKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL--------------PDNGHTMEFNPTTGECVLSISE  169 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~l~i~~  169 (579)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.||+++  ..   +.              ...+..+..+...+..+|.|.+
T Consensus        32 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  111 (282)
T 1qok_A           32 QSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSS  111 (282)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECc
Confidence            34567888999999999998765  5899999953  11   10              1133444444345668999999


Q ss_pred             CCCCCCeEEEEEEEcCCc---eeE--EEEEEEEeeccccC----CCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC
Q psy16852        170 ATPQDEAVYSVKAVNTFG---RAE--CRANLVLRKATTID----KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT  240 (579)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~---~~~--~~~~~~v~~~~~~~----~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  240 (579)
                      ++.+|+|.|+|.+.+..|   ...  ....+.|.......    ......++.+...+....+.+|++++|.|.+.+.+ 
T Consensus       112 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-  190 (282)
T 1qok_A          112 LTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-  190 (282)
T ss_dssp             CCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-
T ss_pred             CChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-
Confidence            999999999999999865   111  12244443211000    00001234455556667789999999999999888 


Q ss_pred             CeEEEEE--CCEEec-------------cCce--EEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        241 PEVKWFK--NGKEIV-------------SKDI--ETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       241 ~~v~W~~--~~~~i~-------------~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      +.+.|+|  ++..+.             ....  ........|.|.+++.+|+|.|+|.|.+..
T Consensus       191 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  254 (282)
T 1qok_A          191 SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY  254 (282)
T ss_dssp             SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence            8999999  554331             1111  123456789999999999999999998743

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.72  E-value=4.1e-17  Score=137.15  Aligned_cols=153  Identities=17%  Similarity=0.151  Sum_probs=102.6

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEcc------------CCCeEEEEECCCCeE
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK------------EGKEVTIYQDTDGLC  364 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~------------~~~~~~~~~~~~~~~  364 (579)
                      .+.+..|+.++|.|... .+                   .+.|.|++++..+.            ...++.. ...+  .
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~-------------------~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~-~~~~--~   60 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VP-------------------LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL-DTVS--G   60 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SC-------------------CSCEEEEETTEEEEEEETTEEEECGGGTTSEEE-CTTT--C
T ss_pred             EEEEEcCCCEEEcCCCC-CC-------------------cceEEEEeCCcEEEEEcCCCcccccccCCcEEE-eCCC--C
Confidence            35677888999998752 23                   34555555554321            1112222 1122  3


Q ss_pred             EEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeC
Q psy16852        365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG  444 (579)
Q Consensus       365 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~  444 (579)
                      +|.|.+++.+|+|.|+|.+.|..|  ...+.|.|...+   ..|.+.....        ..+|.|.+.+.|.|++.|+++
T Consensus        61 sL~I~~v~~~DsG~Y~C~~~n~~~--~~~~~L~V~~~~---~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~  127 (171)
T 1ccz_A           61 SLTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMV---SKPMIYWECS--------NATLTCEVLEGTDVELKLYQG  127 (171)
T ss_dssp             CEEECSCCGGGCEEEEEECTTCCS--CEEEEEEEECCC---CCCEEEEETT--------TTEEEEECSSCSSCEEEEEET
T ss_pred             eEEECCCChhhCceEEEEEeCCCC--cEEEEEEEECcC---CCCEEEEecC--------CcEEEEEeCCCCCcEEEEEEC
Confidence            799999999999999999998877  566777776532   2344442211        238999999999999999999


Q ss_pred             CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852        445 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       445 ~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                      |..+....+                                            ..|.+.  ..+|+|.|+|.|.|..|..
T Consensus       128 ~~~l~~~~~--------------------------------------------~~l~~~--~~~~~g~Y~C~a~N~~~~~  161 (171)
T 1ccz_A          128 KEHLRSLRQ--------------------------------------------KTMSYQ--WTNLRAPFKCKAVNRVSQE  161 (171)
T ss_dssp             TEEEEEESS--------------------------------------------SEEEEE--CSCCSSCEEEEEEETTEEE
T ss_pred             CEECcCCcc--------------------------------------------eEEEEe--ccCCCceEEEEEEcccCcc
Confidence            988742211                                            113332  3678999999999999998


Q ss_pred             EEEEEEE
Q psy16852        525 TCTATLS  531 (579)
Q Consensus       525 ~~~~~l~  531 (579)
                      ..++.|.
T Consensus       162 ~~~~~l~  168 (171)
T 1ccz_A          162 SEMEVVN  168 (171)
T ss_dssp             EEEECCC
T ss_pred             cceeEEe
Confidence            8776654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.72  E-value=2.1e-17  Score=144.54  Aligned_cols=178  Identities=16%  Similarity=0.185  Sum_probs=103.8

Q ss_pred             CccccccCceee--eCCCCEEEEEEEEeeCC----CeeEEEECCEEecCCCCE-EEEEeCC----EEEEEEcCCCCCCCE
Q psy16852          7 PRFIEKIQPVVS--HQEQPALFTCKVEGHPL----PTMTWQKDGTELHATEHY-LITTVES----VSTLEIINPTKEDIG   75 (579)
Q Consensus         7 p~~~~~p~~~~v--~~G~~~~l~C~~~~~~~----~~v~W~~~g~~~~~~~~~-~~~~~~~----~~~L~i~~~~~~d~G   75 (579)
                      |.+...|....+  .+|+.++|.|.+.|.++    ..|.|||+|..+...... ......+    ...|.|.....+|+|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            445555544434  79999999999998753    499999999877533100 0011111    123343333344599


Q ss_pred             EEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCCCce
Q psy16852         76 VYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHT  153 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~  153 (579)
                      .|+|.|.|..+.......+.+  ......+|.+...........|..++|.|.+.|+ |+ +.|+|++++..+.......
T Consensus        82 ~Y~C~a~n~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  159 (207)
T 1l6x_A           82 EYKCKVSNKALPAPIEKTISK--AKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTP  159 (207)
T ss_dssp             CEEEEEECTTSSSCEEEEECC--CCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred             eEEEEEEcCcCCcceEEEecc--CCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccC
Confidence            999999998775422222321  0011223443322221112346679999999885 44 4999999998875321111


Q ss_pred             EEEcCCCCe----EEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        154 MEFNPTTGE----CVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       154 ~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      .... .++.    ..|.+.....+|.|.|+|.|.|...
T Consensus       160 ~~~~-~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          160 PVLD-SDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             CEEC-TTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ceEC-CCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            1111 1221    3455666556689999999999764

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.72  E-value=2.7e-16  Score=142.80  Aligned_cols=177  Identities=11%  Similarity=0.149  Sum_probs=116.4

Q ss_pred             CCCceEEccCCcEEEEEEEEee--cCCeEEEEECC--E--E-c-------------cCCCCceEEEcCCCCeEEEEECcC
Q psy16852        111 PLKPVIAEAQSPATLKATVTGR--PTPSICWYRGK--E--E-I-------------LPDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~--~-~-------------~~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      .+.++.+.+|+.++|.|.+.+.  +.+.+.||+..  .  . +             ....+..+..+...+..+|.|.++
T Consensus        14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   93 (257)
T 3gkz_A           14 ESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSV   93 (257)
T ss_dssp             EECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCC
Confidence            3445668899999999999874  46899999832  1  1 1             011234444433455678999999


Q ss_pred             CCCCCeEEEEEEEcCC----ceeEEEEEEEEeeccc---cCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCCC-e
Q psy16852        171 TPQDEAVYSVKAVNTF----GRAECRANLVLRKATT---IDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTP-E  242 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~----~~~~~~~~~~v~~~~~---~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~  242 (579)
                      +.+|+|.|+|.+.+..    ........+.|.....   .....+..++.+...+....+.+|++++|.|.+.+.+.+ .
T Consensus        94 ~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  173 (257)
T 3gkz_A           94 SSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSH  173 (257)
T ss_dssp             CGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGG
T ss_pred             ChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceE
Confidence            9999999999999862    1111223444432100   000011234556666667789999999999999988777 9


Q ss_pred             EEEEEC--CEEec----c---------Cc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        243 VKWFKN--GKEIV----S---------KD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       243 v~W~~~--~~~i~----~---------~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      +.|+++  +....    .         ..  .........|.|.+++.+|+|.|+|.|.+..
T Consensus       174 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          174 LYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            999983  22111    0         11  1223355679999999999999999998643

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.72  E-value=1e-16  Score=144.97  Aligned_cols=179  Identities=13%  Similarity=0.139  Sum_probs=114.4

Q ss_pred             ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE-----Ecc-------CCCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852        107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE-----EIL-------PDNGHTMEFNPTTGECVLSISEATPQD  174 (579)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~-----~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d  174 (579)
                      .+...+..+.+.+|+.++|.|.+.+.|.+.+.|++...     .+.       .....++......+..+|.|.+++.+|
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED   85 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence            44555667888999999999999988999999998531     110       011122233334556789999999999


Q ss_pred             CeEEEEEEEcCCceeE-EEEEEEEeecccc--------CCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC--CCeE
Q psy16852        175 EAVYSVKAVNTFGRAE-CRANLVLRKATTI--------DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP--TPEV  243 (579)
Q Consensus       175 ~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~--------~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v  243 (579)
                      +|.|+|.+.+..+... ....+.+......        .......++.....+....+.+|+.++|.|.+.+.+  .+.+
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  165 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWM  165 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEE
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEE
Confidence            9999999988755322 1223444321000        000000122233334556688999999999998866  6799


Q ss_pred             EEEEC--CEEecc------------------CceEE----eCCeEEEEEcccCCCCCeEEEEEEEc
Q psy16852        244 KWFKN--GKEIVS------------------KDIET----KDNVTKLVIKQTTKKTTGKYEIRVVN  285 (579)
Q Consensus       244 ~W~~~--~~~i~~------------------~~~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n  285 (579)
                      .|+++  +..+..                  .....    ......|.|.+++.+|+|.|.|.|.+
T Consensus       166 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          166 NWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            99997  332210                  01111    13445799999999999999999987

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.72  E-value=1.4e-16  Score=145.62  Aligned_cols=198  Identities=13%  Similarity=0.172  Sum_probs=127.6

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCC----CeEEEEECCCCeEEEEEcccC
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG----KEVTIYQDTDGLCKLAISEVF  372 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~  372 (579)
                      .+.+..|+.+.|.|.+. .+...+.|+...     .+.....+.+..++......    .++.+..+..+...|.|.+++
T Consensus        35 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~  108 (268)
T 3pl6_D           35 NKVTEKGKYVELRCDPI-SGHTALYWYRQS-----LGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTE  108 (268)
T ss_dssp             EEEEETTCCEEEEEBCB-TTCCEEEEEEEC-----TTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCC
T ss_pred             EEEecCCCCEEEEEEeC-CCCceEEEEEEC-----CCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCC
Confidence            35577899999999865 344556665311     12222233333344333222    456655545566799999999


Q ss_pred             CCCCEEEEEEEEcC--ceeEEEEEEEEEEecccCCCCCeee-cCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEE
Q psy16852        373 PENAGLYSCTAVNP--VGEAVAAATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEE  447 (579)
Q Consensus       373 ~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~  447 (579)
                      .+|+|.|+|.+.+.  .+.......|.|........+|.+. ..+....+..|+.++|.|.+.|.|++  .+.|+++|..
T Consensus       109 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~  188 (268)
T 3pl6_D          109 RGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  188 (268)
T ss_dssp             GGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSE
T ss_pred             cccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEE
Confidence            99999999999983  3444455677777533333456544 33444556679999999999986665  8999999988


Q ss_pred             cCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCeeE
Q psy16852        448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSV  524 (579)
Q Consensus       448 l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  524 (579)
                      +..+.+...          .........+.|.|.+..              .|.|.....+| +|.|+|.|.|.....
T Consensus       189 l~~~~~~~~----------~~~~~~~~~~~~~~~~~s--------------~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          189 VHSGVCTDP----------QPLKEQPALNDSRYSLSS--------------RLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             ECTTEEECS----------SCEESSTTCTTCCEEEEE--------------EEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             CCCCeEecc----------ccccccccCCCCcEEEEE--------------EEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            854321100          011223344556665543              38999998888 999999999986543

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.71  E-value=1.8e-17  Score=146.05  Aligned_cols=165  Identities=15%  Similarity=0.140  Sum_probs=108.3

Q ss_pred             EccCCcEEEEEEEEee---cC-CeEEEEECCEEccCCCCceEEEcCCC----CeEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        117 AEAQSPATLKATVTGR---PT-PSICWYRGKEEILPDNGHTMEFNPTT----GECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       117 ~~~g~~~~l~C~~~~~---p~-~~i~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      +.+|+.++|.|.+.+.   |. +.|.|++++..+...... ......+    ..+.|.|.+++.+|+|.|+|.+.|..+.
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~  101 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ-THREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLP  101 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEE-EEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccc-cccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCC
Confidence            6789999999999887   34 799999999876533211 1111111    2357999999999999999999998664


Q ss_pred             eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEeccCce---EEeCC-
Q psy16852        189 AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDI---ETKDN-  262 (579)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~~---~~~~~-  262 (579)
                      ......+...       ..+..+|.+...+.......|+.+.|.|.+.| +|.+ .+.|+++|..+.....   ..... 
T Consensus       102 ~~~~~~v~~~-------~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g  174 (218)
T 2rgs_A          102 SPIERTISKI-------KGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDG  174 (218)
T ss_dssp             SCEEEEECCC-------CCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTS
T ss_pred             CcceEEEeec-------CCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCC
Confidence            3122222110       01234565544333222345999999999998 6766 9999999998753211   01111 


Q ss_pred             ----eEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        263 ----VTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       263 ----~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                          .+.|.|.....+|.|.|+|.|.|....
T Consensus       175 t~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          175 SYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             CEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             CEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence                134555555556799999999997654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.71  E-value=7.4e-18  Score=150.88  Aligned_cols=173  Identities=14%  Similarity=0.139  Sum_probs=113.4

Q ss_pred             CCceEEccCCcEEEEEEEEeecC-C-eEEEEECCE--Ec---c-------CCCCceEEEcCCCCeEEEEECcCCCCCCeE
Q psy16852        112 LKPVIAEAQSPATLKATVTGRPT-P-SICWYRGKE--EI---L-------PDNGHTMEFNPTTGECVLSISEATPQDEAV  177 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p~-~-~i~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  177 (579)
                      +..+.+.+|+.++|.|.+.+.+. + .+.||+++.  .+   .       .....++......+..+|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            56677889999999999987543 4 799998631  11   0       011112222223456789999999999999


Q ss_pred             EEEEEEcCCcee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-CeEEEEECCEEe
Q psy16852        178 YSVKAVNTFGRA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-PEVKWFKNGKEI  252 (579)
Q Consensus       178 Y~C~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~i  252 (579)
                      |+|.+.+..+.. .  ....+.|..       ....+|.+...+.......|+.++|.|.+.+. |+ +.+.|+++|+.+
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~-------~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l  178 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLG-------QPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPV  178 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCC-------CCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEEC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEec-------CCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEEC
Confidence            999999887621 1  112222210       00123443332222223468899999999885 44 389999999988


Q ss_pred             ccCceE---------EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE
Q psy16852        253 VSKDIE---------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR  291 (579)
Q Consensus       253 ~~~~~~---------~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~  291 (579)
                      ......         .....+.|.|..+..+|+|.|+|.|.|..+...
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  226 (234)
T 2j6e_L          179 KAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  226 (234)
T ss_dssp             CSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCC
T ss_pred             CCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceE
Confidence            654210         112336799999999999999999999887543

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.71  E-value=3.2e-18  Score=153.15  Aligned_cols=175  Identities=14%  Similarity=0.174  Sum_probs=96.2

Q ss_pred             ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE--Ec---c-------CCCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852        107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE--EI---L-------PDNGHTMEFNPTTGECVLSISEATPQD  174 (579)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d  174 (579)
                      .+...+..+.+.+|++++|.|.+.+.|.+.+.||+++.  .+   .       .....++......+..+|.|.+++.+|
T Consensus        25 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  104 (233)
T 3bqu_C           25 TVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSED  104 (233)
T ss_dssp             CEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCC
T ss_pred             eEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHH
Confidence            34444566778899999999999888888999998532  11   0       000011111111234589999999999


Q ss_pred             CeEEEEEEEcCCceeEE-EEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEECCEE
Q psy16852        175 EAVYSVKAVNTFGRAEC-RANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFKNGKE  251 (579)
Q Consensus       175 ~G~Y~C~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~  251 (579)
                      +|.|+|.+.+..+.... ...+.+..        ...+|.+...+......+|+.++|.|.+.+. |.+ .+.|+++|..
T Consensus       105 ~G~Y~C~~~~~~~~~~~~~~~l~V~~--------~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  176 (233)
T 3bqu_C          105 VADYYCLQSDNLPYTFGGGTNLEIKR--------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE  176 (233)
T ss_dssp             CSEEEEEECSSSSCCBCCCCBC---C--------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC---
T ss_pred             CEEEEEEEecCCceeecCCEEEEEeC--------CCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCee
Confidence            99999999887542211 11223221        1125555543332233468999999999984 444 7999999988


Q ss_pred             eccC-ceE---------EeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        252 IVSK-DIE---------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       252 i~~~-~~~---------~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      +... ...         .....+.|.|.....+|+|.|+|.|.|....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          177 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             --CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            7655 110         0112357889999999999999999987643

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.71  E-value=1.4e-16  Score=146.08  Aligned_cols=181  Identities=14%  Similarity=0.173  Sum_probs=115.6

Q ss_pred             CceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE-----EccC-------CCCceEEEcCCCCeEEEEECcCCCC
Q psy16852        106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE-----EILP-------DNGHTMEFNPTTGECVLSISEATPQ  173 (579)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~-----~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~  173 (579)
                      +.+...+..+.+.+|++++|.|.+.+.|.+.+.||+++.     .+..       ....++......+..+|.|.+++.+
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   92 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE   92 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChh
Confidence            345555677889999999999999888889999998542     1110       1111222222345678999999999


Q ss_pred             CCeEEEEEEEcCCcee-EEEEEEEEeeccccC---CCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC--CCeEEEEE
Q psy16852        174 DEAVYSVKAVNTFGRA-ECRANLVLRKATTID---KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP--TPEVKWFK  247 (579)
Q Consensus       174 d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~~---~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~  247 (579)
                      |+|.|+|.+.+..+.. .....+.|.......   ......++.....+....+.+|+.++|.|.+.+.+  .+.+.|++
T Consensus        93 DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k  172 (276)
T 3auv_A           93 DFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVR  172 (276)
T ss_dssp             GCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             hCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEE
Confidence            9999999999875431 112334443210000   00000122223334556789999999999999876  47999999


Q ss_pred             CC--EEe---c---------------cCceEEe----CCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852        248 NG--KEI---V---------------SKDIETK----DNVTKLVIKQTTKKTTGKYEIRVVNE  286 (579)
Q Consensus       248 ~~--~~i---~---------------~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~a~n~  286 (579)
                      ++  ...   .               .......    .....|.|.+++.+|+|.|+|.|.|.
T Consensus       173 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          173 QAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             ECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             cCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            63  111   0               0111111    24458999999999999999999997

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.71  E-value=3.5e-17  Score=143.01  Aligned_cols=166  Identities=13%  Similarity=0.118  Sum_probs=108.7

Q ss_pred             EccCCcEEEEEEEEeec---C-CeEEEEECCEEccCCCCc-eEEEcCC--CCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        117 AEAQSPATLKATVTGRP---T-PSICWYRGKEEILPDNGH-TMEFNPT--TGECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       117 ~~~g~~~~l~C~~~~~p---~-~~i~W~~~~~~~~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      +.+|+.++|.|.+.+.+   . ..|.|++++..+...... .......  .....|.|.+++.+|+|.|+|.+.+..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            67899999999998884   2 599999999776432100 0001000  113579999999999999999999987754


Q ss_pred             EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEEEECCEEeccCce---EEeC---
Q psy16852        190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDI---ETKD---  261 (579)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~~---~~~~---  261 (579)
                      .....+.+.       ..+..+|.+...+.......|+.+.|.|.+.| .|++ .+.|+++|..+.....   ....   
T Consensus        95 ~~~~~v~~~-------~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~  167 (207)
T 2vol_A           95 PIEKTISKT-------KGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGS  167 (207)
T ss_dssp             CEEEEECCC-------CCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSC
T ss_pred             ceEEEeccC-------CCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCC
Confidence            222222210       01234566544333222335899999999998 4553 8999999998754321   1111   


Q ss_pred             --CeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        262 --NVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       262 --~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                        ..+.|.|.....+|.|.|+|.|.|....
T Consensus       168 ~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          168 YFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             EEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             EEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence              1234666666667899999999997643

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.71  E-value=1.7e-16  Score=140.09  Aligned_cols=171  Identities=14%  Similarity=0.169  Sum_probs=115.7

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc--------------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL--------------PDNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      ..+.+.+|++++|.|.+.+.+  .+.+.||+..  .   .+.              ...++.+..+...+..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            457788999999999998765  5789999853  1   111              113344444444567899999999


Q ss_pred             CCCCeEEEEEEEcCCcee---EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC--CeEEE
Q psy16852        172 PQDEAVYSVKAVNTFGRA---ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT--PEVKW  245 (579)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~v~W  245 (579)
                      .+|+|.|.|.+.+..+..   .....+.|...       ...+|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W  159 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAE-------SARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTW  159 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSS-------CCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEE
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecCC-------CCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEE
Confidence            999999999999875421   11234444321       11345554333 2346789999999999886 76  69999


Q ss_pred             EECCEEecc--Cc-eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE
Q psy16852        246 FKNGKEIVS--KD-IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR  291 (579)
Q Consensus       246 ~~~~~~i~~--~~-~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~  291 (579)
                      ++++..+..  .. ..    .....+.|.|.....+|.|.|+|.|.|..+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          160 GKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            999876421  00 00    111124689999988999999999999887643

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.71  E-value=5.9e-17  Score=143.76  Aligned_cols=174  Identities=16%  Similarity=0.177  Sum_probs=111.3

Q ss_pred             CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---c---c-----------CCCCceEEEcCCCCeEEEEECcC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---I---L-----------PDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +..+.+.+|++++|.|.+.+.+  .+.+.||+++  ..   +   .           ...+..+..+...+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            4456788999999999998766  5899999853  11   1   0           02334444343456789999999


Q ss_pred             CCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEE
Q psy16852        171 TPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFK  247 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~  247 (579)
                      +.+|+|.|+|.+.+..+... ....+.|...       ...+|.+........+..|+.++|.|.+.+. |.+ .+.|++
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~-------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  159 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAA-------KTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNS  159 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSS-------CCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCC-------CCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEec
Confidence            99999999999988632211 1234444311       0123444432222245679999999999985 776 999999


Q ss_pred             CCEEecc---CceE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852        248 NGKEIVS---KDIE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS  293 (579)
Q Consensus       248 ~~~~i~~---~~~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~  293 (579)
                      ++..+..   ....   .....+.|.|.....+| |.|+|.|.|..+.....
T Consensus       160 ~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  210 (227)
T 1mju_H          160 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD  210 (227)
T ss_dssp             GTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             CCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceE
Confidence            9875421   1111   11234578999988888 99999999977654433

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.71  E-value=2.6e-16  Score=120.19  Aligned_cols=96  Identities=28%  Similarity=0.365  Sum_probs=88.4

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      ...+|.|...|.++.+.+|+.+.|.|.+.+.|.+.+.|+++|..+....++..........|.|.+++.+|+|.|+|.|.
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A            5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence            34589999999999999999999999999999999999999999988888888877788899999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEe
Q psy16852         83 NIGGVATCSANLIVLE   98 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~   98 (579)
                      |..|.....+.|.|..
T Consensus        85 N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           85 NYKGEASDYATLDVTG  100 (103)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCcEEEEEEEEEEC
Confidence            9999998888888864

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.71  E-value=4.4e-17  Score=145.93  Aligned_cols=176  Identities=15%  Similarity=0.194  Sum_probs=114.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EE---ec------------CCCCEEEEE-eCCEEEEEEcCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TE---LH------------ATEHYLITT-VESVSTLEIINPT   70 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~---~~------------~~~~~~~~~-~~~~~~L~i~~~~   70 (579)
                      ++..|.++.+.+|+.++|.|.+. .+.+.+.|||++  ..   +.            ...++.+.. .....+|+|.+++
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   80 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT   80 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence            45678899999999999999985 456799999953  11   10            123443332 2356799999999


Q ss_pred             CCCCEEEEEEEEcCCe-----eeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cCC-eEEEEEC
Q psy16852         71 KEDIGVYTCKATNIGG-----VATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PTP-SICWYRG  142 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~~g-----~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~  142 (579)
                      .+|+|.|+|.+.+..+     .......|.|........+|.+.. .+....+.+|+.++|.|.+.+. |.+ .|.|+++
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  160 (238)
T 1bec_A           81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  160 (238)
T ss_dssp             GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred             cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence            9999999999998631     112234677765322223444432 3333445679999999999886 654 9999999


Q ss_pred             CEEccCCCCce---EEEcCCCCe----EEEEECcCCCCC-CeEEEEEEEcCCc
Q psy16852        143 KEEILPDNGHT---MEFNPTTGE----CVLSISEATPQD-EAVYSVKAVNTFG  187 (579)
Q Consensus       143 ~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~~  187 (579)
                      +..+.......   ...  .++.    ..|.|......| .|.|+|.+.|...
T Consensus       161 g~~~~~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          161 GKEVHSGVSTDPQAYKE--SNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             TEEECTTEEECSSCEEE--ETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             CEECCCceecccceEeC--CCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            98876542110   111  1122    234554444444 6789999998743

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.70  E-value=7.3e-17  Score=143.07  Aligned_cols=171  Identities=12%  Similarity=0.132  Sum_probs=113.5

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc--------------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL--------------PDNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      ..+.+.+|++++|.|.+.+.+  .+.+.||+..  ..   +.              ...+..+..+...+..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            346788999999999998766  6899999853  11   10              123344444444567899999999


Q ss_pred             CCCCeEEEEEEEcCCc-----ee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-
Q psy16852        172 PQDEAVYSVKAVNTFG-----RA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-  241 (579)
Q Consensus       172 ~~d~G~Y~C~~~~~~~-----~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-  241 (579)
                      .+|+|.|+|.+.+..+     .. .  ....+.|...       ...+|.+........+..|+.++|.|.+.+. |.+ 
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~  160 (225)
T 1op3_H           88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPA-------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  160 (225)
T ss_dssp             GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESC-------SCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCC
T ss_pred             hhhCEEEEEEEecCCCccccccceeecCCEEEecccC-------CCcCCeEEEecccccccCCCcEEEEEEEEeEECCCe
Confidence            9999999999998754     11 1  1234444321       1123444322211135679999999999985 776 


Q ss_pred             eEEEEECCEEeccC---ceE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE
Q psy16852        242 EVKWFKNGKEIVSK---DIE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR  291 (579)
Q Consensus       242 ~v~W~~~~~~i~~~---~~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~  291 (579)
                      .+.|++++..+...   ...    .....+.|.|.....+| |.|+|.|.|..+...
T Consensus       161 ~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          161 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             EEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             EEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            99999998653210   010    01123568999998888 999999999776543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.70  E-value=1.8e-16  Score=142.29  Aligned_cols=176  Identities=14%  Similarity=0.141  Sum_probs=111.8

Q ss_pred             eecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE-----Ecc---------CCCCceEEEcCCCCeEEEEECcCCCC
Q psy16852        108 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE-----EIL---------PDNGHTMEFNPTTGECVLSISEATPQ  173 (579)
Q Consensus       108 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~-----~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~  173 (579)
                      +...+..+.+.+|++++|.|.+.+.|.+.+.||++..     .+.         ...++.+  ....+..+|.|.+++.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSG--SGSGTDFTLSINSVETE   81 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETTEEEEEESSCCGG
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEE--ecCCCEEEEEECCCChH
Confidence            3445566788999999999999888889999998531     111         0122222  22345678999999999


Q ss_pred             CCeEEEEEEEcCCceeE-EEEEEEEeecccc---CCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccC--CCeEEEEE
Q psy16852        174 DEAVYSVKAVNTFGRAE-CRANLVLRKATTI---DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP--TPEVKWFK  247 (579)
Q Consensus       174 d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~---~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~  247 (579)
                      |+|.|+|.+.+..+... ....+.|......   .......+..+..+ ....+.+|++++|.|.+.+.+  .+.+.|++
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k  160 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQES-GPSLVKPSQTLSLTCSVTGDSITSDYXSXIR  160 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEE-CCSEECTTSCEEEEEEEESSCGGGSCEEEEE
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecC-CcceecCCCeEEEEEEEEccccCCcceeeEe
Confidence            99999999998754211 1234444321100   00000011122222 234588999999999999875  46899998


Q ss_pred             C--CEEec-----------------cCceEE----eCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852        248 N--GKEIV-----------------SKDIET----KDNVTKLVIKQTTKKTTGKYEIRVVNE  286 (579)
Q Consensus       248 ~--~~~i~-----------------~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~  286 (579)
                      +  +..+.                 ......    ......|.|.+++.+|+|.|+|.|.|.
T Consensus       161 ~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          161 KFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             ECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            4  22210                 111111    134568999999999999999999873

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.70  E-value=3.4e-16  Score=118.58  Aligned_cols=96  Identities=30%  Similarity=0.436  Sum_probs=84.9

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEE-EeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLIT-TVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ...||.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+++|..+....++... .......|.|.+++.+|+|.|+|.|
T Consensus         2 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (99)
T 1g1c_A            2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA   81 (99)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEE
Confidence            356899999999999999999999999999999999999999999877666543 3456789999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEe
Q psy16852         82 TNIGGVATCSANLIVLE   98 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~   98 (579)
                      .|..|.....+.|.|..
T Consensus        82 ~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           82 INIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCcEEEEEEEEEec
Confidence            99999998888888853

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.70  E-value=1.9e-15  Score=128.83  Aligned_cols=156  Identities=10%  Similarity=0.079  Sum_probs=109.7

Q ss_pred             eEEccCCcEEEEEEEEeecCC--eEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852        115 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECR  192 (579)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (579)
                      +.+..|++++|.|.+ +.|.+  .|.|++.+..+   .+..  ..  .+...|.|.+++.+|+|.|.|.+.+..+.....
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~--~~--~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~   88 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQ--SD--TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT   88 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEE--EE--SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEE--ec--CCccEEEECccCcccCceEEEEEEeCCCceEEE
Confidence            678899999999999 88877  99999855433   1111  11  345789999999999999999999988776666


Q ss_pred             EEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC----CeEEEEECCEEeccCce---EE-----
Q psy16852        193 ANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT----PEVKWFKNGKEIVSKDI---ET-----  259 (579)
Q Consensus       193 ~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~----~~v~W~~~~~~i~~~~~---~~-----  259 (579)
                      ..++|.           .+|........ .+..|+.+ |.|.+.+. |.    +++.|+|++.++.....   ..     
T Consensus        89 ~~ltV~-----------~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~  155 (210)
T 1gsm_A           89 VQLLVY-----------AFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEE  155 (210)
T ss_dssp             EEEEEE-----------BCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTT
T ss_pred             EEEEEE-----------ecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccc
Confidence            777665           34432221111 46677888 99999984 64    38999999999865431   11     


Q ss_pred             ---------eCCeEEEEEcccCCCCCeEEEEEEEcCCeeeE
Q psy16852        260 ---------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEAR  291 (579)
Q Consensus       260 ---------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~  291 (579)
                               ....+.+.+.....++.+.|+|+|.+..-...
T Consensus       156 ~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~  196 (210)
T 1gsm_A          156 EPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLE  196 (210)
T ss_dssp             CCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred             cccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCc
Confidence                     11123444556666777899999987654333

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.70  E-value=4.2e-16  Score=138.67  Aligned_cols=178  Identities=17%  Similarity=0.210  Sum_probs=112.7

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc-------------CCCCceEEEcCCCCeEEEEECcCCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL-------------PDNGHTMEFNPTTGECVLSISEATP  172 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~  172 (579)
                      ..+.+.+|++++|.|.+.+.+  .+.+.||+..  .   .+.             ...++.+..+...+..+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            446788999999999998764  5789999853  1   110             1233444444445678999999999


Q ss_pred             CCCeEEEEEEEcCC--ce----eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCC-CeEEEEEEEEcc-CCC-eE
Q psy16852        173 QDEAVYSVKAVNTF--GR----AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD-STVTLEAEYTGT-PTP-EV  243 (579)
Q Consensus       173 ~d~G~Y~C~~~~~~--~~----~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~v  243 (579)
                      +|+|.|+|.+.+..  +.    ......+.|...       ...+|.+........+..| +.++|.|.+.+. |.+ .+
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v  160 (232)
T 1dn0_B           88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSG-------SASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITF  160 (232)
T ss_dssp             GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSS-------CCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEE
T ss_pred             ccCEEEEEEEecCCcCCchhhhcccceEEEEccC-------CCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEE
Confidence            99999999998421  11    112234444321       1123444322111224467 999999999885 776 99


Q ss_pred             EEEE-CCEEeccCc----e---EEeCCeEEEEEcccCC--CCCeEEEEEEEcCCeeeEEEEEEE
Q psy16852        244 KWFK-NGKEIVSKD----I---ETKDNVTKLVIKQTTK--KTTGKYEIRVVNEAGEARTSGSVT  297 (579)
Q Consensus       244 ~W~~-~~~~i~~~~----~---~~~~~~~~l~i~~~~~--~d~G~y~C~a~n~~g~~~~~~~~~  297 (579)
                      .|++ +|..+....    .   ......+.|.|.....  +|.|.|+|.|.|..+.......+.
T Consensus       161 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~  224 (232)
T 1dn0_B          161 SWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLP  224 (232)
T ss_dssp             EEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECC
T ss_pred             EEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecC
Confidence            9999 998875410    0   0112235688888886  789999999999988765554443

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.69  E-value=4.4e-16  Score=140.44  Aligned_cols=177  Identities=12%  Similarity=0.127  Sum_probs=112.1

Q ss_pred             eecCCCceEEccCCcEEEEEEEEeec-----CCeEEEEECC--E--E-cc---------CCCCceEEEcCCCCeEEEEEC
Q psy16852        108 FTKPLKPVIAEAQSPATLKATVTGRP-----TPSICWYRGK--E--E-IL---------PDNGHTMEFNPTTGECVLSIS  168 (579)
Q Consensus       108 ~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~--~--~-~~---------~~~~~~~~~~~~~~~~~l~i~  168 (579)
                      +...+..+.+.+|+.++|.|.+.+.+     .+.+.||++.  .  . +.         ...++..  ....+..+|.|.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~L~I~   81 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSG--SGSGTDFTLKIS   81 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEE--EEETTEEEEEES
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEe--ccCCCEEEEEEC
Confidence            33445677889999999999998877     6899999842  1  1 11         0122222  223456789999


Q ss_pred             cCCCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccC-CC-CccCCCeEeccCCceeeCCCCeEEEEEEEEccC--CCeE
Q psy16852        169 EATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTID-KP-RVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTP--TPEV  243 (579)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~-~~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v  243 (579)
                      +++.+|+|.|+|.+.+..+... ....+.|....... .+ ....++.....+....+.+|+.++|.|.+.+.+  .+.+
T Consensus        82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  161 (247)
T 1svz_A           82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSM  161 (247)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred             CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEE
Confidence            9999999999999998754321 12344443211000 00 000022222223334589999999999999874  4689


Q ss_pred             EEEECC--EEe------c------------cCceEE----eCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852        244 KWFKNG--KEI------V------------SKDIET----KDNVTKLVIKQTTKKTTGKYEIRVVNE  286 (579)
Q Consensus       244 ~W~~~~--~~i------~------------~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~  286 (579)
                      .|++++  ...      .            ......    ......|.|.+++.+|+|.|.|.|.|.
T Consensus       162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            999953  211      0            111111    234568999999999999999999985

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.69  E-value=3e-16  Score=138.25  Aligned_cols=185  Identities=18%  Similarity=0.226  Sum_probs=129.2

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc-----eEEeCCeEEEEEcccCCCCCeEEEEEEE
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTGKYEIRVV  284 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~-----~~~~~~~~~l~i~~~~~~d~G~y~C~a~  284 (579)
                      .+|.+. .+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....     .........|.|.++..+|+|.|+|.|.
T Consensus        18 ~~P~~~-~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEEE-CCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCccc-CCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            455553 4555789999999999999999999999999999987653     2223457899999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCC--eEEEEECCEEccCCCeEEEEECCCC
Q psy16852        285 NEAGEARTSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTP--LVTWSHDGTPMKEGKEVTIYQDTDG  362 (579)
Q Consensus       285 n~~g~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~  362 (579)
                      |..|.......+.|...+..+..+... .......+.|....   ...|.|..  .+.|.+++........... .....
T Consensus        97 n~~g~~~~~~~l~v~~~P~~p~~~~~~-~~~~~~~l~w~~p~---~~~~~pi~~y~v~~~~~~~~~w~~~~~~~-~~~~~  171 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPSSPSIDQVE-PYSSTAQVQFDEPE---ATGGVPILKYKAEWRAVGEEVWHSKWYDA-KEASM  171 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCCCCEEEEEE-EETTEEEEEEECCS---CCCSSCEEEEEEEEEETTCCCCEEEEEEH-HHHHH
T ss_pred             ECCCceEEEEEEEECCCCCCCcceEEE-EecceEEEEEecCC---ccCCCceEEEEEEEEECCCCccccccccc-ccccc
Confidence            999998877777776555555544443 22334456664221   12233333  4788887753211100000 00000


Q ss_pred             eEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEEe
Q psy16852        363 LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE  400 (579)
Q Consensus       363 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  400 (579)
                      ...|.|.++...+.|.|+|.|.|..|.+..+..+.+..
T Consensus       172 ~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T  209 (215)
T 3mtr_A          172 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT  209 (215)
T ss_dssp             HTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred             cccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEe
Confidence            12799999999999999999999999887777666664

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.69  E-value=4.7e-17  Score=147.25  Aligned_cols=177  Identities=16%  Similarity=0.182  Sum_probs=113.0

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e---cCC---------C-CEEEEEeCCEEEEEEcCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L---HAT---------E-HYLITTVESVSTLEIINPT   70 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~---~~~---------~-~~~~~~~~~~~~L~i~~~~   70 (579)
                      +...|..+.+.+|++++|.|.+.+.+.+.+.|||.  +..   +   ...         . ++......... |+|.+++
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~   82 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVAN   82 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEES
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCC
Confidence            44568889999999999999988777789999982  111   1   000         1 33332222223 9999999


Q ss_pred             CCCCEEEEEEEEcCCe------eeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEe-ecCC-eEEEEE
Q psy16852         71 KEDIGVYTCKATNIGG------VATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTG-RPTP-SICWYR  141 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~~g------~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~  141 (579)
                      .+|+|.|+|.+.+..+      .....+.+.|........+|.+.. .+....+..|+.++|.|.+.+ +|.+ .++|++
T Consensus        83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k  162 (253)
T 3to4_D           83 MSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  162 (253)
T ss_dssp             CSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             hhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence            9999999999986533      222334666764322223444332 222223345789999999988 5556 899999


Q ss_pred             CCEEccCCCCceE--EEc--C-CCCe----EEEEECcCCCCC-CeEEEEEEEcCC
Q psy16852        142 GKEEILPDNGHTM--EFN--P-TTGE----CVLSISEATPQD-EAVYSVKAVNTF  186 (579)
Q Consensus       142 ~~~~~~~~~~~~~--~~~--~-~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~  186 (579)
                      ++..+........  ...  . .++.    +.|.|.....+| .|.|+|.+.|..
T Consensus       163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          163 NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            9988754321100  000  0 1121    468888887777 779999998864

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.69  E-value=1.5e-16  Score=141.43  Aligned_cols=173  Identities=15%  Similarity=0.220  Sum_probs=111.8

Q ss_pred             CceEEccCCcEEEEEEEEeecC----CeEEEEECC--EE---cc-------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852        113 KPVIAEAQSPATLKATVTGRPT----PSICWYRGK--EE---IL-------------PDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p~----~~i~W~~~~--~~---~~-------------~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      ..+.+.+|++++|.|.+.+.|.    +.+.||+..  ..   +.             ...+..+..+...+..+|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            4467889999999999987664    899999842  11   10             01233333333445689999999


Q ss_pred             CCCCCeEEEEEEEcCCc------ee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC
Q psy16852        171 TPQDEAVYSVKAVNTFG------RA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT  240 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~------~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~  240 (579)
                      +.+|+|.|+|.+.+..|      .. .  ....+.|...       ...+|.+........+.+|+.++|.|.+.+. |.
T Consensus        88 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~  160 (228)
T 3bae_H           88 DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSA-------KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE  160 (228)
T ss_dssp             CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSC-------CCBCCEEEEECC-----CCSEEEEEEEEEEEBSS
T ss_pred             CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCC-------CCCCCEEEEecccccccCCCCEEEEEEEccEeCC
Confidence            99999999999988654      11 1  1234444310       1134544433222335689999999999985 77


Q ss_pred             C-eEEEEECCEEeccCc---eE---EeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852        241 P-EVKWFKNGKEIVSKD---IE---TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS  293 (579)
Q Consensus       241 ~-~v~W~~~~~~i~~~~---~~---~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~  293 (579)
                      + .+.|++++..+....   ..   .....+.|.|.....++ |.|+|.|.|..+.....
T Consensus       161 p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          161 PVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             CCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             CEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            7 999999886532111   00   11124568898888866 99999999988765543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.69  E-value=2.3e-16  Score=119.78  Aligned_cols=97  Identities=26%  Similarity=0.415  Sum_probs=84.0

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEE-EeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLIT-TVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      .+.||.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+++|..+......... ...+...|.|.+++.+|+|.|+|.|
T Consensus         2 ~~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (100)
T 2kdg_A            2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA   81 (100)
T ss_dssp             CCEEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence            467899999999999999999999999999999999999999998766543333 3345579999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEec
Q psy16852         82 TNIGGVATCSANLIVLEK   99 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~   99 (579)
                      .|..|....++.|.|..+
T Consensus        82 ~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           82 KNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EcCCCeEEEEEEEEEEec
Confidence            999999888888888753

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.69  E-value=5.4e-16  Score=139.74  Aligned_cols=198  Identities=15%  Similarity=0.203  Sum_probs=123.5

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCC----CeEEEEECCCCeEEEEEcccC
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG----KEVTIYQDTDGLCKLAISEVF  372 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~  372 (579)
                      .+.+..|+.+.|.| ....+...+.|+..     ..+.....+.+..++......    .++.......+.+.|.|.+++
T Consensus        11 ~v~v~~G~~v~L~C-~~~~~~~~v~W~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~   84 (245)
T 4ei6_B           11 HQIIDMGQMVTLNC-DPVSNHLYFYWYKQ-----ILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTA   84 (245)
T ss_dssp             EEEEETTCCEEEEE-ECCTTCCEEEEEEE-----ETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCC
T ss_pred             eEEecCCCCEEEEE-EcCCCCCEEEEEEE-----CCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCC
Confidence            35577889999999 44444455555431     011111123333344433221    556655555567799999999


Q ss_pred             CCCCEEEEEEEEcC----ceeEEEEEEEEEEecccCCCCCeee-cCCCceeeecCCCeEEEEEEEee-CCC-eEEEeeCC
Q psy16852        373 PENAGLYSCTAVNP----VGEAVAAATLAVEEKEESGEAPKFT-KPLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGK  445 (579)
Q Consensus       373 ~~d~G~Y~C~a~n~----~g~~~~~~~l~v~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~  445 (579)
                      .+|+|.|+|.+.+.    .+.......|.|........+|.+. ..+....+..|+.++|.|.+.|. |.+ .+.|+++|
T Consensus        85 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g  164 (245)
T 4ei6_B           85 LEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  164 (245)
T ss_dssp             GGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             HhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECC
Confidence            99999999999953    2334445567776432222355544 34444556679999999999984 444 89999999


Q ss_pred             EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCeeE
Q psy16852        446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSV  524 (579)
Q Consensus       446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  524 (579)
                      ..+....+...          ..+......+.|.|.+..              .|.|.....+| .|.|+|.|.|.....
T Consensus       165 ~~l~~~~~~~~----------~~~~~~~~~~~g~~~~~s--------------~L~i~~~~~~d~~g~ytC~v~~~~l~~  220 (245)
T 4ei6_B          165 KEVHSGVCTDP----------QPLKEQPALNDSRYALSS--------------RLRVSATFWQNPRNHFRCQVQFYGLSE  220 (245)
T ss_dssp             EEECTTEEECS----------SCEESSTTSTTCCEEEEE--------------EEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             EECCCCccccc----------ccccccccCCCCCEEEEE--------------EEEEcHHHhccCCCeEEEEEEECCCCC
Confidence            98864321110          001112223456665443              39999998888 999999999975544

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.69  E-value=1e-15  Score=137.37  Aligned_cols=194  Identities=16%  Similarity=0.192  Sum_probs=122.0

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccC---CCeEEEEECCCCeEEEEEcccCC
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE---GKEVTIYQDTDGLCKLAISEVFP  373 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~  373 (579)
                      .+.+..|..+.|.|.+.. +...+.|+...     .+.....+.+..++.....   ..++....+..+.++|.|.+++.
T Consensus        11 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~-----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~   84 (240)
T 3q5y_A           11 HIIKEKGGRSVLTCIPIS-GHSNVVWYQQT-----LGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL   84 (240)
T ss_dssp             EEEEETTCCEEEEEECCT-TCCEEEEEEEC-----TTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             eeeecCCCcEEEEEEeCC-CCceEEEEEEC-----CCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCCh
Confidence            356778999999998653 44455554311     1111222233334333221   24566665556678999999999


Q ss_pred             CCCEEEEEEEEc--C-ceeEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEe-eCCC-eEEEeeCCEE
Q psy16852        374 ENAGLYSCTAVN--P-VGEAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTG-RPTP-SICWYRGKEE  447 (579)
Q Consensus       374 ~d~G~Y~C~a~n--~-~g~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~v~W~~~~~~  447 (579)
                      +|+|.|+|.+.+  . .........|.|........+|.+.. .+....+..|+.++|.|.+.| .|.+ .+.|+++|..
T Consensus        85 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~  164 (240)
T 3q5y_A           85 EDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE  164 (240)
T ss_dssp             GGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             hHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEE
Confidence            999999999983  2 22333445677764322334565553 344455667999999999998 5656 8999999998


Q ss_pred             cCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCeeE
Q psy16852        448 ILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSV  524 (579)
Q Consensus       448 l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  524 (579)
                      +....+..              ........|.|.+.              +.|.|..+..+| .|.|+|.|.|.....
T Consensus       165 l~~~~~~~--------------~~~~~~~~g~~~~~--------------s~L~i~~~~~~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          165 VHSGVSTD--------------PQAYKESNYSYSLS--------------SRLRVSATFWHNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             ECTTEEEC--------------SSCEEEETTEEEEE--------------EEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             CcCcEecC--------------CceeeCCCCCEEEE--------------EEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            85432110              01112223455443              339999999998 679999999976543

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.69  E-value=3.9e-16  Score=132.40  Aligned_cols=155  Identities=15%  Similarity=0.233  Sum_probs=104.8

Q ss_pred             CCceEEccCCcEEEEEEEEe-ecCCeEEEEEC-CEEcc------------CCCCceEEEcCCCCeEEEEECcCCCCCCeE
Q psy16852        112 LKPVIAEAQSPATLKATVTG-RPTPSICWYRG-KEEIL------------PDNGHTMEFNPTTGECVLSISEATPQDEAV  177 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~-~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  177 (579)
                      ..++.+.+|++++|.|.+.+ .+.+.|.|++. +..+.            ...+.+...+  .+.++|.|.+++.+|+|.
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~--~~~~sL~I~~v~~~D~G~   83 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD--KTNGALRIYNVSKEDRGD   83 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC--TTTCCEEECSCCGGGCEE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe--CCCccEEEcCCCHHHCeE
Confidence            34577889999999998743 23589999994 32221            1111233332  234579999999999999


Q ss_pred             EEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEE-EccCCCeEEEEECCEEeccCc
Q psy16852        178 YSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEY-TGTPTPEVKWFKNGKEIVSKD  256 (579)
Q Consensus       178 Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~i~~~~  256 (579)
                      |+|.+.+.. .......+.|...        ...|.+..        .+..+.|.|.+ .+ |.+.+.|++++..+..  
T Consensus        84 Y~C~v~~~~-~~~~~~~L~V~~~--------~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~--  143 (180)
T 2dru_A           84 YYMRMLHET-EDQWKITMEVYEM--------VSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS--  143 (180)
T ss_dssp             EEEEEESSS-EEEEEEEEEEECC--------CCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE--
T ss_pred             EEEEEEcCC-eEEEEEEEEEECC--------CCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC--
Confidence            999998775 4444445554311        12233321        24569999999 55 8889999999998751  


Q ss_pred             eEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEE
Q psy16852        257 IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSG  294 (579)
Q Consensus       257 ~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~  294 (579)
                          .....|.+..  .+|+|.|+|.|.|..+......
T Consensus       144 ----~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~  175 (180)
T 2dru_A          144 ----LRQKTMSYQW--TNLRAPFKCKAVNRVSQESEME  175 (180)
T ss_dssp             ----ESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEE
T ss_pred             ----CCCCEEEEEE--hhcCccEEEEEecCcCccccce
Confidence                1223455532  7899999999999998766544

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.69  E-value=3.1e-16  Score=141.62  Aligned_cols=181  Identities=14%  Similarity=0.177  Sum_probs=116.2

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E--E-ec------------CCCCEEEEE-eCCEEEEEEcC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T--E-LH------------ATEHYLITT-VESVSTLEIIN   68 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~--~-~~------------~~~~~~~~~-~~~~~~L~i~~   68 (579)
                      +.+...|.++.+.+|++++|.|.+. .+.+.+.|||+.  .  . +.            ...++.... ......|+|.+
T Consensus         4 ~~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~   82 (252)
T 1oga_E            4 GGITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS   82 (252)
T ss_dssp             -CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred             ccceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence            4567778899999999999999985 456799999953  1  1 10            123443322 12456899999


Q ss_pred             CCCCCCEEEEEEEEcCC---eeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cC-CeEEEEEC
Q psy16852         69 PTKEDIGVYTCKATNIG---GVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PT-PSICWYRG  142 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~---g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~  142 (579)
                      ++.+|+|.|+|.+.+..   ........+.|........+|.+.. .+....+.+|+.++|.|.+.+. |. +.|.|+++
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  162 (252)
T 1oga_E           83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  162 (252)
T ss_dssp             CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence            99999999999998851   1122234566654221123444432 2333344579999999999886 65 49999999


Q ss_pred             CEEccCCCCce---EE-E-cCCCCe----EEEEECcCCCC-CCeEEEEEEEcCCce
Q psy16852        143 KEEILPDNGHT---ME-F-NPTTGE----CVLSISEATPQ-DEAVYSVKAVNTFGR  188 (579)
Q Consensus       143 ~~~~~~~~~~~---~~-~-~~~~~~----~~l~i~~~~~~-d~G~Y~C~~~~~~~~  188 (579)
                      +..+.......   .. . ...++.    +.|.|...... |.|.|+|.+.|....
T Consensus       163 g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          163 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            98875432110   00 0 011222    35777766654 678999999987543

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.68  E-value=7e-16  Score=116.87  Aligned_cols=94  Identities=28%  Similarity=0.476  Sum_probs=86.6

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      .-||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+....++.+........|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence            35788999999999999999999999999999999999999999888888888887888999999999999999999999


Q ss_pred             CCeeeEEEEEEEEE
Q psy16852         84 IGGVATCSANLIVL   97 (579)
Q Consensus        84 ~~g~~~~~~~~~v~   97 (579)
                      ..|.....+.|.|.
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 3puc_A           84 SAGSVSSSCKLTIK   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEeEEEEEEEE
Confidence            99998888888875

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.68  E-value=2.1e-16  Score=118.00  Aligned_cols=90  Identities=21%  Similarity=0.303  Sum_probs=79.3

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +||.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|+++|  ..+....  ..........|.|.+++.+|+|.|+|.|.
T Consensus         1 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEEEE
Confidence            5899998999999999999999999999999999999999  8776553  33445667899999999999999999999


Q ss_pred             cCCeeeEEEEEEEE
Q psy16852         83 NIGGVATCSANLIV   96 (579)
Q Consensus        83 ~~~g~~~~~~~~~v   96 (579)
                      |..|....++.|.|
T Consensus        79 N~~G~~~~~~~l~V   92 (93)
T 1wit_A           79 NELGEDEAIFEVIV   92 (93)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEEE
Confidence            99998888877776

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1.9e-16  Score=119.28  Aligned_cols=92  Identities=15%  Similarity=0.257  Sum_probs=82.2

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      -.||.|...|.++.+.+|+.+.|.|.+  .|.+.++|||||..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            5 SSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             SCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence            358899999999999999999999999  788899999999999988888888877788999999999999999999998


Q ss_pred             CCeeeEEEEEEEEEec
Q psy16852         84 IGGVATCSANLIVLEK   99 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~   99 (579)
                      .  ....++.|.|.++
T Consensus        83 ~--~~~~~a~L~V~~~   96 (100)
T 2yuz_A           83 Y--NVTLPAKVHVISG   96 (100)
T ss_dssp             S--CCCEEEEEEEECC
T ss_pred             C--CeeEEEEEEEeCC
Confidence            7  4556778888754

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.68  E-value=4.3e-16  Score=141.58  Aligned_cols=180  Identities=18%  Similarity=0.228  Sum_probs=107.2

Q ss_pred             ceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--EE---ccCC--------------CCceEEEcCCCCeEEEEE
Q psy16852        107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EE---ILPD--------------NGHTMEFNPTTGECVLSI  167 (579)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~---~~~~--------------~~~~~~~~~~~~~~~l~i  167 (579)
                      .+...+..+.+.+|++++|.|.+.+.+.+.+.||+..  ..   +...              .+.....+...+..+|.|
T Consensus         4 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   83 (259)
T 3omz_A            4 NLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMIL   83 (259)
T ss_dssp             -------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEE
T ss_pred             ccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEE
Confidence            4455566788999999999999988888999999821  11   1000              022222233345568999


Q ss_pred             CcCCCCCCeEEEEEEEcCCce---eEEEEEEEEeeccccC------CCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc
Q psy16852        168 SEATPQDEAVYSVKAVNTFGR---AECRANLVLRKATTID------KPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT  238 (579)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~~v~~~~~~~------~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  238 (579)
                      .+++.+|+|.|+|.+.+..+.   ......+.|.......      .......|.+...+....+.+|++++|.|.+.+.
T Consensus        84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  163 (259)
T 3omz_A           84 RNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETS  163 (259)
T ss_dssp             SSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECC
T ss_pred             CCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCc
Confidence            999999999999999987652   2222344443211000      0001113556666677789999999999988874


Q ss_pred             -CCCeEEEEECC--EEec-------------cCceEE----eCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852        239 -PTPEVKWFKNG--KEIV-------------SKDIET----KDNVTKLVIKQTTKKTTGKYEIRVVNE  286 (579)
Q Consensus       239 -p~~~v~W~~~~--~~i~-------------~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~  286 (579)
                       +.+.+.|++.+  ..+.             ......    ......|.|.+++.+|+|.|.|.+.+.
T Consensus       164 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          164 WWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             CSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             cCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence             77799999843  1110             001111    123456999999999999999999753

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.68  E-value=2.3e-15  Score=136.59  Aligned_cols=199  Identities=14%  Similarity=0.189  Sum_probs=110.2

Q ss_pred             EEeccceeeeeeeeeecc--ccCceeeeecCeeEEEeeeCCCeEEEEECCEEccCCCeEEEEECCCCeEEEEEcccCCCC
Q psy16852        298 ITVAEAETVMMDVRVESH--PTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPEN  375 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  375 (579)
                      +.+.+|..+.|.|.+...  +...+.|+...     .+.....+.+..+........++.... ....++|.|.+++.+|
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D   85 (256)
T 3ux9_B           12 VSGAPGQRVTISCSGSSSNIGSNYVSWYQQL-----PGTAPKLLIYDNNQRPSGVPDRFSGSK-SGTSASLAITGLQSED   85 (256)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTSCCEEEEEC-----TTSCCEEEEBTTTBCCTTCCTTEEEEE-ETTEEEEEECSCCGGG
T ss_pred             EEEcCCCcEEEEEecCCCCCCCceEEEEEEC-----CCCCCEEEEEecCCCCCCcCCcEEEEc-cCCEEEEEECCCChhh
Confidence            557788999999987654  34445554211     011111111111111111223454433 2356789999999999


Q ss_pred             CEEEEEEEEcCce---eEEEEEEEEEEecccCCC---------------CCeeecCCCceeeecCCCeEEEEEEEeeC--
Q psy16852        376 AGLYSCTAVNPVG---EAVAAATLAVEEKEESGE---------------APKFTKPLKPVIAEAQSPATLKATVTGRP--  435 (579)
Q Consensus       376 ~G~Y~C~a~n~~g---~~~~~~~l~v~~~~~~~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--  435 (579)
                      +|.|+|.+.|..+   .......|.|...+....               .+.+.. +....+.+|+.++|.|.+.+.|  
T Consensus        86 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~  164 (256)
T 3ux9_B           86 EADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFS  164 (256)
T ss_dssp             CEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGG
T ss_pred             CEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCccc
Confidence            9999999998653   223445677765321100               123333 3345688999999999999877  


Q ss_pred             CCeEEEeeCC--EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee--CCeeEEEEeecccccce
Q psy16852        436 TPSICWYRGK--EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD--GNRSVLLISKITRDQIG  511 (579)
Q Consensus       436 ~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G  511 (579)
                      .+.+.|++++  ..+    ...+.           +..   .+...+.-.....++.+..+  .....|+|.+++.+|+|
T Consensus       165 ~~~v~W~r~~~~~~~----~~~~~-----------~~~---~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG  226 (256)
T 3ux9_B          165 SYAMSWVRQAPGKGL----EWVSA-----------ISG---SGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTA  226 (256)
T ss_dssp             GSEEEEEEECTTCCE----EEEEE-----------ECS---SSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ccEEEEEEECCCCCc----EEEEE-----------Ecc---CCCceecCccccceEEEEecCCCCEEEEEECCCChhhCE
Confidence            6799999862  111    00000           000   00000000011112223322  34667999999999999


Q ss_pred             eEEEEEEeCC
Q psy16852        512 DVTCRAENVA  521 (579)
Q Consensus       512 ~Y~C~a~n~~  521 (579)
                      .|+|.|.|..
T Consensus       227 ~Y~C~~~~~~  236 (256)
T 3ux9_B          227 VYYCARYIDF  236 (256)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEEcCC
Confidence            9999999963

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.67  E-value=1.2e-15  Score=115.47  Aligned_cols=94  Identities=24%  Similarity=0.409  Sum_probs=79.5

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+....++.+..                           
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~---------------------------   56 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYW---------------------------   56 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE---------------------------
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEE---------------------------
Confidence            46778777888899999999999999999999999999999987665544321                           


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                             ..+..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        57 -------~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           57 -------PEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ   97 (99)
T ss_dssp             -------EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -------cCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEEe
Confidence                   12345569999999999999999999999999999999885

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.67  E-value=5.4e-16  Score=114.76  Aligned_cols=89  Identities=20%  Similarity=0.156  Sum_probs=78.3

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      ..||.|+..|.++.+.+|+.++|.|.+.+ +.+.++|||||..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            46899999999999999999999999975 45789999999999988888888888888999999999999999999976


Q ss_pred             CCeeeEEEEEEEEE
Q psy16852         84 IGGVATCSANLIVL   97 (579)
Q Consensus        84 ~~g~~~~~~~~~v~   97 (579)
                      .    ..++.|.|.
T Consensus        82 ~----~~sa~L~V~   91 (93)
T 1waa_A           82 T----KSAANLKVK   91 (93)
T ss_dssp             E----EEEEEEEEE
T ss_pred             C----cEEEEEEEE
Confidence            3    456677775

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.67  E-value=7.6e-16  Score=142.18  Aligned_cols=176  Identities=12%  Similarity=0.152  Sum_probs=114.1

Q ss_pred             CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---cc--------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---IL--------------PDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +..+.+.+|++++|.|.+.+.+  .+.+.||++.  ..   +.              ...+..+..+...+..+|.|.++
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  108 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL  108 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred             CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence            3467889999999999998766  5799999953  11   10              01333444333345678999999


Q ss_pred             CCCCCeEEEEEEEcCC-c--eeE--EEEEEEEeecc----c-cCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEccCC
Q psy16852        171 TPQDEAVYSVKAVNTF-G--RAE--CRANLVLRKAT----T-IDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPT  240 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~-~--~~~--~~~~~~v~~~~----~-~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  240 (579)
                      +.+|+|.|+|.+.+.. +  ...  ....+.|....    . ...+....++.+...+....+.+|++++|.|.+.+.+.
T Consensus       109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  188 (291)
T 2gki_A          109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLF  188 (291)
T ss_dssp             CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCE
T ss_pred             CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccc
Confidence            9999999999999874 1  111  12244443200    0 00000112334444555667899999999999988776


Q ss_pred             C------eEEEEECC--E---Eec----------cCce--EEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        241 P------EVKWFKNG--K---EIV----------SKDI--ETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       241 ~------~v~W~~~~--~---~i~----------~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      +      .+.|++++  .   .+.          ....  ........|.|.+++.+|+|.|+|.|.|..
T Consensus       189 ~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          189 NSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             ETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            5      89999952  2   111          1111  123445689999999999999999998854

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.67  E-value=1.2e-15  Score=138.55  Aligned_cols=179  Identities=12%  Similarity=0.167  Sum_probs=114.4

Q ss_pred             CCceecCCCceEEccCCcEEEEEEEEeec------CCeEEEEECC--EE---cc---------CCCCceEEEcCCCCeEE
Q psy16852        105 APKFTKPLKPVIAEAQSPATLKATVTGRP------TPSICWYRGK--EE---IL---------PDNGHTMEFNPTTGECV  164 (579)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p------~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~  164 (579)
                      .+.+...+..+.+.+|+.++|.|.+.+.+      .+.+.||++.  ..   +.         ...++...  ...+...
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~--~~~~~~~   82 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGS--GSGTDFT   82 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEe--cCCCEEE
Confidence            34555566778899999999999998776      5799999852  21   11         01233322  2345679


Q ss_pred             EEECcCCCCCCeEEEEEEEcCCcee-EEEEEEEEeecccc-----CCC---Cc-cCCCeEeccCCceeeCCCCeEEEEEE
Q psy16852        165 LSISEATPQDEAVYSVKAVNTFGRA-ECRANLVLRKATTI-----DKP---RV-LEAPTIVRPLQALLVPKDSTVTLEAE  234 (579)
Q Consensus       165 l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~~v~~~~~~-----~~~---~~-~~~p~~~~~~~~~~~~~g~~~~l~C~  234 (579)
                      |.|.+++.+|+|.|+|.+.+..+.. .....+.|......     ...   .. ...+.+.. +....+.+|++++|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~  161 (264)
T 2gjj_A           83 LTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQ-SGPEVVKTGASVKISCK  161 (264)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEE-CCCEEECTTCCEEEEEE
T ss_pred             EEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeC-CCCEEEcCCCcEEEEEE
Confidence            9999999999999999998875421 11234444321000     000   00 01112222 23346889999999999


Q ss_pred             EEccCC--CeEEEEECC--E---Eec---------------cCceEE----eCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852        235 YTGTPT--PEVKWFKNG--K---EIV---------------SKDIET----KDNVTKLVIKQTTKKTTGKYEIRVVNE  286 (579)
Q Consensus       235 ~~~~p~--~~v~W~~~~--~---~i~---------------~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~a~n~  286 (579)
                      +.+.+.  +.+.|+++.  .   .+.               ......    ......|.|.+++.+|+|.|.|.|.|.
T Consensus       162 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          162 ASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            998764  699999963  2   121               011111    134578999999999999999999985

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.67  E-value=5e-16  Score=159.03  Aligned_cols=174  Identities=14%  Similarity=0.292  Sum_probs=121.6

Q ss_pred             EEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEccC------------CCeEEEEECCCCeEE
Q psy16852        298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKE------------GKEVTIYQDTDGLCK  365 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~  365 (579)
                      +.+..|..+.|.|...                  .+.|.+.+.|++++..+..            ..+...  ..++  +
T Consensus       376 ~~~~~G~~v~L~C~~~------------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~--~  433 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGA------------------PKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV--LPNG--S  433 (581)
T ss_dssp             EEEETTSCEEECCTTC------------------CSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE--CTTS--C
T ss_pred             cceecCCcEEEeeeec------------------CCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE--cCCc--e
Confidence            4466788888888641                  3456678888887653211            112221  1222  7


Q ss_pred             EEEcccCCCCCEEEEEEEEcCceeE-EEEEEEEEEecccCCCCCeeecCCCceeeecCCCe-EEEEEEEe-eCCCeEEEe
Q psy16852        366 LAISEVFPENAGLYSCTAVNPVGEA-VAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPA-TLKATVTG-RPTPSICWY  442 (579)
Q Consensus       366 l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~~g-~p~~~v~W~  442 (579)
                      |.|.+++.+|+|.|+|.+.|..|.. ...+.|.|...+   ..|.+.....  .+..|+.. .|.|.+.+ +|.|+++|+
T Consensus       434 L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~---~~p~i~~~~~--~~~~~~~~~~l~C~~~~~~P~~~i~W~  508 (581)
T 3o3u_N          434 LFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIP---GKPEIVDSAS--ELTAGVPNKVGTCVSEGSYPAGTLSWH  508 (581)
T ss_dssp             EEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCC---CCCEEESCCS--EECTTSCEEEEEEEEEEEBSCCEEEEE
T ss_pred             EEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCC---CCCEEEcCCc--ccccCCceeEEEEECCCCCCCCeEEEE
Confidence            9999999999999999999999877 677888887643   2455553333  24455554 66999998 599999999


Q ss_pred             eCCEEcCCCCCeeEEEcCCCCeEEEEEcccc-CCCceeEEEEeecceeeeeeeCCeeEEEEeecc-cccceeEEEEEEeC
Q psy16852        443 RGKEEILPDNGHTMEFNPTTGECVLSISEAT-PQDEAVYSVKASSTETKIMTDGNRSVLLISKIT-RDQIGDVTCRAENV  520 (579)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~  520 (579)
                      ++|..+....+..           +...... ..++|.|+|...              |.|..++ .++.|.|+|.|+|.
T Consensus       509 ~~g~~l~~~~~~~-----------~~~~~~~~~~~~g~y~~~s~--------------L~i~~~~~~d~~~~y~C~~~n~  563 (581)
T 3o3u_N          509 LDGKPLVPNEKGV-----------SVKEQTRRHPETGLFTLQSE--------------LMVTPARGGDPRPTFSCSFSPG  563 (581)
T ss_dssp             ETTEECCTTSTTE-----------EEEEEEEECTTTCCEEEEEE--------------EEECCCTTSCSCCCEEEEEECS
T ss_pred             ECCEECCCCCCeE-----------EEEeeeEEcCCCceEEEEEE--------------EEEEeccccCCCceEEEEEecc
Confidence            9999986533211           1122222 348999999866              9999998 55589999999999


Q ss_pred             Cee
Q psy16852        521 AGS  523 (579)
Q Consensus       521 ~g~  523 (579)
                      .+.
T Consensus       564 ~~~  566 (581)
T 3o3u_N          564 LPR  566 (581)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            754

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.67  E-value=1.1e-15  Score=136.18  Aligned_cols=180  Identities=15%  Similarity=0.201  Sum_probs=111.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCee--EEEECC-----EEe-----c-----------CCCCEEEEEe--CCEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTM--TWQKDG-----TEL-----H-----------ATEHYLITTV--ESVST   63 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v--~W~~~g-----~~~-----~-----------~~~~~~~~~~--~~~~~   63 (579)
                      ..|..+.+.+|++++|.|.+.+.+  ...+  .|||..     ..+     .           ...++.+...  .+..+
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   84 (232)
T 3qhz_H            5 RESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVV   84 (232)
T ss_dssp             EEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEE
T ss_pred             EcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEE
Confidence            456778899999999999997642  2345  999832     111     0           1135555543  35678


Q ss_pred             EEEcCCCCCCCEEEEEEEEcCC--------eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEeecC-
Q psy16852         64 LEIINPTKEDIGVYTCKATNIG--------GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-  134 (579)
Q Consensus        64 L~i~~~~~~d~G~Y~C~~~~~~--------g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-  134 (579)
                      |+|.+++.+|+|.|+|.+.+..        ........+.|...  ...+|.+........+..|+.++|.|.+.+.++ 
T Consensus        85 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~  162 (232)
T 3qhz_H           85 LTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSA--STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (232)
T ss_dssp             EEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSS--CCBCCEEEEECC-------CEEEEEEEEEEEBSS
T ss_pred             EEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecC--CCCCCEEEEecccccccCCCcEEEEEEEeeEeCC
Confidence            9999999999999999998753        12223345666532  123444443233334557999999999987554 


Q ss_pred             -CeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852        135 -PSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL  195 (579)
Q Consensus       135 -~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  195 (579)
                       ..+.|++++..+........ .. .++    .+.|.|......| |.|+|.+.|..+.......+
T Consensus       163 ~~~v~W~~~g~~~~~~~~~~~-~~-~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l  225 (232)
T 3qhz_H          163 PVTVSWNSGALTSGVHTFPAV-LQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV  225 (232)
T ss_dssp             CCEEEEGGGTBCTTEEECCCE-EC-TTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             CeEEEEEECCEecceeeccce-eC-CCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEe
Confidence             46889998764321100001 11 111    2468899988888 99999999987765554443

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.67  E-value=8.8e-16  Score=119.55  Aligned_cols=98  Identities=28%  Similarity=0.422  Sum_probs=85.8

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-CCCEEEEEeC-CEEEEEEcCCCCCCCEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVE-SVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      ...+|.|+..|.++.+.+|+.++|.|.+.|.|.+.+.|+++|..+.. ..++.+.... +..+|.|.+++.+|+|.|+|.
T Consensus        12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (116)
T 2kkq_A           12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS   91 (116)
T ss_dssp             CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEE
Confidence            45789999999999999999999999999999999999999999874 4566655444 355899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEecc
Q psy16852         81 ATNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        81 ~~~~~g~~~~~~~~~v~~~~  100 (579)
                      |.|..|.....+.|.|...+
T Consensus        92 a~N~~G~~~~~~~l~V~~~p  111 (116)
T 2kkq_A           92 AVNEAGVTTCNTRLDVTARP  111 (116)
T ss_dssp             EEETTEEEEEEEEEEEECCS
T ss_pred             EEcCCCeEEEEEEEEEeCCC
Confidence            99999999888999998654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.67  E-value=1.8e-15  Score=115.46  Aligned_cols=93  Identities=19%  Similarity=0.258  Sum_probs=80.1

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+..                           
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~---------------------------   59 (103)
T 3qp3_A            7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN---------------------------   59 (103)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE---------------------------
T ss_pred             CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEE---------------------------
Confidence            36778877888899999999999999999999999999999987766554422                           


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ++....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus        60 --------~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           60 --------TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT   99 (103)
T ss_dssp             --------ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             --------CCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEE
Confidence                    3345569999999999999999999999999999999986

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.66  E-value=9.2e-16  Score=119.43  Aligned_cols=93  Identities=22%  Similarity=0.249  Sum_probs=80.0

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.|...+....+.+|+.++|.|.+.|.|.|.+.|+|++..+..+.++.+..                           
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~---------------------------   58 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN---------------------------   58 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE---------------------------
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEE---------------------------
Confidence            58888888888999999999999999999999999999998887665554432                           


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        59 --------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~   98 (114)
T 2cqv_A           59 --------SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV   98 (114)
T ss_dssp             --------CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEE
T ss_pred             --------cCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEE
Confidence                    2334569999999999999999999999999999999986

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.66  E-value=1.4e-15  Score=135.98  Aligned_cols=180  Identities=13%  Similarity=0.195  Sum_probs=114.2

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC----CeeEEEECC--E---Ee---c----------------CCCCEEEEEe--CC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL----PTMTWQKDG--T---EL---H----------------ATEHYLITTV--ES   60 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~g--~---~~---~----------------~~~~~~~~~~--~~   60 (579)
                      .+|..+.+.+|++++|.|.+.+.+.    ..+.|||..  .   .+   .                ...++.+...  ..
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   84 (239)
T 3tv3_H            5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKN   84 (239)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGT
T ss_pred             ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCC
Confidence            4577899999999999999987653    389999832  1   11   1                1134444432  45


Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEcCCe-------------eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEE
Q psy16852         61 VSTLEIINPTKEDIGVYTCKATNIGG-------------VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKA  127 (579)
Q Consensus        61 ~~~L~i~~~~~~d~G~Y~C~~~~~~g-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C  127 (579)
                      ...|+|.+++.+|+|.|+|.+.+..+             .......+.|...  ...+|.+........+..|+.++|.|
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~l~C  162 (239)
T 3tv3_H           85 LVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSA--STKGPSVFPLAPSSKSTSGGTAALGC  162 (239)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCC--CCBCCEEEEECCCCCC--TTEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccC--CCcCCEEEEECCChhhccCCcEEEEE
Confidence            67899999999999999999976421             1112345555432  12344444333333445799999999


Q ss_pred             EEEee-cC-CeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852        128 TVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL  195 (579)
Q Consensus       128 ~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  195 (579)
                      .+.+. |. ..+.|++++..+........ .. .++    .+.|.|......| |.|+|.+.|..+.......+
T Consensus       163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~-~~-~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l  233 (239)
T 3tv3_H          163 LVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV  233 (239)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCE-EC-TTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             EEeeEeCCCeEEEEEECCccCceEecCce-EC-CCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEe
Confidence            99874 43 36889998764321111011 11 111    2468899988888 99999999987665544443

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=6.9e-16  Score=137.08  Aligned_cols=177  Identities=18%  Similarity=0.197  Sum_probs=113.0

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Eec-------------CCCCEEEEEeC--CEEEEEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---ELH-------------ATEHYLITTVE--SVSTLEI   66 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~~-------------~~~~~~~~~~~--~~~~L~i   66 (579)
                      +...|..+.+.+|++++|.|.+.+.  +...+.|||..  .   .+.             ...++.+....  +..+|+|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            5567888999999999999999764  45689999842  1   110             12334443322  5679999


Q ss_pred             cCCCCCCCEEEEEEEEcC--Ce--eeEEEEEEEEEeccc-----CCCCCceecCCCceEEccCCcEEEEEEEEee-cC-C
Q psy16852         67 INPTKEDIGVYTCKATNI--GG--VATCSANLIVLEKEE-----SGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-P  135 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~--~g--~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~  135 (579)
                      .+++.+|+|.|.|.+.+.  ..  .....+.|.|.....     .+..+.+.. +....+.+|+.++|.|.+.++ |. +
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~  162 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVI  162 (230)
T ss_dssp             CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred             CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCCe
Confidence            999999999999999874  11  112345677762110     001122221 333345578999999999887 65 6


Q ss_pred             eEEEEE-CCEEccCCCC-ceEEEcCC-CCeEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        136 SICWYR-GKEEILPDNG-HTMEFNPT-TGECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       136 ~i~W~~-~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      .|.|++ ++..+..... .....+.. ...+.|.|..... + |.|+|.+.|..+.
T Consensus       163 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          163 RVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             EEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             EEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            999999 7665543211 11111100 0124688888776 4 9999999998654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.66  E-value=8.7e-16  Score=116.28  Aligned_cols=94  Identities=24%  Similarity=0.494  Sum_probs=81.5

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCC-EEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH-YLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      .||.|...|.+..+.+|+.++|.|.+.+.|.+.+.|+++|..+..... +.........+|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            588999999999999999999999999999999999999999876544 3333344556899999999999999999999


Q ss_pred             CCeeeEEEEEEEEEe
Q psy16852         84 IGGVATCSANLIVLE   98 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~   98 (579)
                      ..|.....+.|.|.+
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999988888888863

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.66  E-value=9.8e-16  Score=135.50  Aligned_cols=168  Identities=14%  Similarity=0.219  Sum_probs=111.8

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECCE--E---c---c-------------CCCCceEEEcCCCCeEEEEECc
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGKE--E---I---L-------------PDNGHTMEFNPTTGECVLSISE  169 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~--~---~---~-------------~~~~~~~~~~~~~~~~~l~i~~  169 (579)
                      ..+.+.+|++++|.|.+.+.+  .+.+.||+...  .   +   .             ...+..+..+...+..+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS   87 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence            346788999999999998643  57999998421  0   1   0             1133444444445677899999


Q ss_pred             CCCCCCeEEEEEEEcCCc--eeEEEEEEEEeeccccCCCCccCCCeEe-ccCCceeeCCCCeEEEEEEEEc-cCC-C-eE
Q psy16852        170 ATPQDEAVYSVKAVNTFG--RAECRANLVLRKATTIDKPRVLEAPTIV-RPLQALLVPKDSTVTLEAEYTG-TPT-P-EV  243 (579)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~-~-~v  243 (579)
                      ++.+|+|.|+|.+.+...  .......+.+...       ...+|.+. ..+...  .+|+.++|.|.+.+ .|. + .+
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~-------~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v  158 (221)
T 3m8o_H           88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSA-------SPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSV  158 (221)
T ss_dssp             CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSC-------CCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEE
T ss_pred             CCHHHCEEEEEEEECCChhheECCCEEEEEecC-------CCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEE
Confidence            999999999999988631  1122234444311       11344444 222222  68999999999998 676 4 89


Q ss_pred             EEEECCEEeccCc---e-----EEeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        244 KWFKNGKEIVSKD---I-----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       244 ~W~~~~~~i~~~~---~-----~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      .|+++|..+....   .     ......+.|.|.....+|.|.|+|.|.|..+.
T Consensus       159 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          159 TWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             EESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             EEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            9999987653111   0     01112346899999999999999999998764

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.65  E-value=2.8e-15  Score=137.67  Aligned_cols=200  Identities=18%  Similarity=0.263  Sum_probs=117.9

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECC-E-Ecc---CCCeEEEEECCCCeEEEEEccc
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDG-T-PMK---EGKEVTIYQDTDGLCKLAISEV  371 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~-~-~~~---~~~~~~~~~~~~~~~~l~i~~~  371 (579)
                      .+.+..|..+.|.|.+...+...+.|+...     .+.....+.....+ . ...   ...++.+..+..+..+|.|.++
T Consensus        33 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v  107 (279)
T 2wbj_D           33 WVISKSGTSVKIECRSLDFQATTMFWYRQF-----PKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSA  107 (279)
T ss_dssp             EEEEETTSCEEEEEEESSSCEEEEEEEEEC-----SSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSC
T ss_pred             eEEecCCCeEEEEEEeCCCCCCeEEEEEeC-----CCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccC
Confidence            456778889999988644333344443211     00000011111110 0 000   1345666555556779999999


Q ss_pred             CCCCCEEEEEEEEcCce------eEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEee-CC-CeEEEe
Q psy16852        372 FPENAGLYSCTAVNPVG------EAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PT-PSICWY  442 (579)
Q Consensus       372 ~~~d~G~Y~C~a~n~~g------~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~-~~v~W~  442 (579)
                      +.+|+|.|+|.+.|..+      .....+.|.|........+|.+.. .+....+..|+.++|.|.+.|. |. +.|.|+
T Consensus       108 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  187 (279)
T 2wbj_D          108 HPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  187 (279)
T ss_dssp             CGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEE
T ss_pred             CccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEE
Confidence            99999999999998421      112335677765332234666653 2333445679999999999987 43 699999


Q ss_pred             eCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCC
Q psy16852        443 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVA  521 (579)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~  521 (579)
                      ++|..+..+.....          ..+........|.|...              +.|.|.....+| .|.|+|.|.|..
T Consensus       188 k~g~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~--------------s~L~i~~~~~~d~~~~YtC~v~n~~  243 (279)
T 2wbj_D          188 VNGKEVHSGVSTDP----------QPLKEQPALNDSRYSLS--------------SRLRVSATFWQNPRNHFRCQVQFYG  243 (279)
T ss_dssp             ETTEECCTTEEECS----------SCEESSTTSTTCCEEEE--------------EEEECCSTTTTCTTCEEEEEEEECC
T ss_pred             ECCEECCCCccccc----------ccccccccCCCCcEEEE--------------EEEEEChHHhccCCCEEEEEEEeCC
Confidence            99998854321000          00111222344555443              338888887764 678999999987


Q ss_pred             eeEE
Q psy16852        522 GSVT  525 (579)
Q Consensus       522 g~~~  525 (579)
                      ....
T Consensus       244 ~~~~  247 (279)
T 2wbj_D          244 LSEN  247 (279)
T ss_dssp             BCTT
T ss_pred             CCCC
Confidence            6543

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.65  E-value=3.9e-16  Score=114.56  Aligned_cols=79  Identities=16%  Similarity=0.357  Sum_probs=69.5

Q ss_pred             CCCccccccCceee--eCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          5 LAPRFIEKIQPVVS--HQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         5 ~~p~~~~~p~~~~v--~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +||.|+.+++++.+  .+|+.++|.|.+.+ |.+.++|+|||+.+..+.++.+...+...+|.|.+++.+|+|.|+|.|.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG   81 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence            68888887777544  68999999999965 7789999999999999889988888888999999999999999999996


Q ss_pred             cC
Q psy16852         83 NI   84 (579)
Q Consensus        83 ~~   84 (579)
                      |.
T Consensus        82 n~   83 (91)
T 2lvc_A           82 DE   83 (91)
T ss_dssp             SC
T ss_pred             ce
Confidence            53

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.65  E-value=9.6e-16  Score=138.56  Aligned_cols=170  Identities=15%  Similarity=0.188  Sum_probs=111.7

Q ss_pred             CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EE---c---c-----------CCCCceEEEcCCCCeEEEEECcC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EE---I---L-----------PDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +..+.+.+|++++|.|.+.+.+  .+.+.||++.  ..   +   .           ...+..+..+...+..+|.|.++
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   92 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL   92 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence            4567789999999999998766  5899999863  11   1   0           01233333333345679999999


Q ss_pred             CCCCCeEEEEEEEcCCcee-E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEE
Q psy16852        171 TPQDEAVYSVKAVNTFGRA-E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKW  245 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W  245 (579)
                      +.+|+|.|+|.+.+..+.. .  ....+.|...       ...+|.+........+..|+.++|.|.+.+. |.+ .+.|
T Consensus        93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W  165 (261)
T 2xqy_G           93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSA-------KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW  165 (261)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECSS-------CCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CcccCeEEEEEEecCCCcceEECCCEEEEEccC-------CCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEE
Confidence            9999999999999864311 1  1234444321       1124444432222235679999999999874 776 9999


Q ss_pred             EECCEEeccC---ce---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        246 FKNGKEIVSK---DI---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       246 ~~~~~~i~~~---~~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      ++++..+...   ..   ......+.|.|.....+| |.|+|.|.|....
T Consensus       166 ~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          166 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             GGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             ecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            9988754211   11   111224678998888878 9999999997654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.65  E-value=2.2e-15  Score=135.10  Aligned_cols=184  Identities=17%  Similarity=0.217  Sum_probs=113.9

Q ss_pred             eecCCCceEEccCCcEEEEEEEEee--cCCeEEEEECC--E---Ecc--------------CCCCceEEEcCCCCeEEEE
Q psy16852        108 FTKPLKPVIAEAQSPATLKATVTGR--PTPSICWYRGK--E---EIL--------------PDNGHTMEFNPTTGECVLS  166 (579)
Q Consensus       108 ~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~l~  166 (579)
                      +...+..+.+.+|++++|.|.+.+.  +.+.+.||+..  .   .+.              ...++.+..+...+..+|.
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (242)
T 1hxm_B            4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (242)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence            3445567788999999999999875  56899999843  1   111              1233333333333678999


Q ss_pred             ECcCCCCCCeEEEEEEEcCCc-----eeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-
Q psy16852        167 ISEATPQDEAVYSVKAVNTFG-----RAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-  238 (579)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~~-----~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-  238 (579)
                      |.+++.+|+|.|+|.+.+...     ...  ....+.|......  ......+.+.. +....+..|+.++|.|.+.+. 
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~--~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~~g~~  160 (242)
T 1hxm_B           84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLD--ADVSPKPTIFL-PSIAETKLQKAGTYLCLLEKFF  160 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCC--SCCSCBCCCCC-CCGGGGGSSSCEEEEEEEEEES
T ss_pred             ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccC--CCcCCCceEEC-CChhhcccCCCceEEEEEeeEE
Confidence            999999999999999987531     111  1234444321000  00001111211 222345679999999999985 


Q ss_pred             CC-CeEEEEECCE-EeccCc---eEEe----CCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852        239 PT-PEVKWFKNGK-EIVSKD---IETK----DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV  296 (579)
Q Consensus       239 p~-~~v~W~~~~~-~i~~~~---~~~~----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~  296 (579)
                      |. +.+.|++++. .+....   ....    ...+.|.|..... + |.|+|.|.|..+.......+
T Consensus       161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~  225 (242)
T 1hxm_B          161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEI  225 (242)
T ss_dssp             SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEE
T ss_pred             CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEe
Confidence            65 6999999987 553221   1111    1235788887765 4 99999999988765444333

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.65  E-value=1.9e-16  Score=141.16  Aligned_cols=166  Identities=15%  Similarity=0.159  Sum_probs=107.0

Q ss_pred             EccCCcEEEEEEEEee---cCC-eEEEEECCEEccCCCCc-eEEEcCC--CCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        117 AEAQSPATLKATVTGR---PTP-SICWYRGKEEILPDNGH-TMEFNPT--TGECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       117 ~~~g~~~~l~C~~~~~---p~~-~i~W~~~~~~~~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      +.+|+.++|.|.+.+.   |.+ .|.||+++..+...... .......  ...+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            6789999999999887   665 99999998765432110 0010000  123579999999999999999999987754


Q ss_pred             EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCC-CeEEEEECCEEeccCce---EEe-CC-
Q psy16852        190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPT-PEVKWFKNGKEIVSKDI---ETK-DN-  262 (579)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~i~~~~~---~~~-~~-  262 (579)
                      .....+.+.       ..+..+|.+...+.......|+.+.|.|.+.| +|. ..+.|++||..+.....   ... ++ 
T Consensus       109 ~~~~~v~~~-------~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt  181 (239)
T 1i1c_A          109 PIEKSISKP-------EGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGS  181 (239)
T ss_dssp             CEEEEECCC-------SSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSC
T ss_pred             CcEEEEecC-------CCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCC
Confidence            222222110       11234565544333222334789999999998 555 38999999998754221   111 11 


Q ss_pred             ---eEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        263 ---VTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       263 ---~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                         .+.|.|.....+|.|.|+|.|.|....
T Consensus       182 ~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          182 YFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence               133555555556799999999997743

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.65  E-value=1.8e-15  Score=135.64  Aligned_cols=181  Identities=14%  Similarity=0.195  Sum_probs=113.2

Q ss_pred             ccccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee--------------cCCCCEEEEEe--CCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL--------------HATEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~--------------~~~~~~~~~~~--~~~~~L~i   66 (579)
                      +..|.++.+.+|++|+|.|.+.+.  +...+.|||..  .   .+              ....++.....  ....+|+|
T Consensus         3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   82 (248)
T 3u2s_H            3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQM   82 (248)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEE
Confidence            456888999999999999999752  34579999832  1   11              01245555443  35678999


Q ss_pred             cCCCCCCCEEEEEEEEcCC----------------------eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEE
Q psy16852         67 INPTKEDIGVYTCKATNIG----------------------GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPAT  124 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~----------------------g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~  124 (579)
                      .+++.+|+|.|.|.+.+..                      ......+.+.|...  ...+|.+........+..|+.++
T Consensus        83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~--~~~~P~v~~~~~~~~~~~g~~~~  160 (248)
T 3u2s_H           83 NSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSA--STKGPSVFPLAPSSKSTSGGTAA  160 (248)
T ss_dssp             CSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSC--CCBCCEEEEECCC------CEEE
T ss_pred             CCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEccc--CCCCCEEEEeCCCccccCCCcEE
Confidence            9999999999999998631                      11122345666522  12344444333333445799999


Q ss_pred             EEEEEEee-c-CCeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852        125 LKATVTGR-P-TPSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL  195 (579)
Q Consensus       125 l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  195 (579)
                      |.|.+.+. | ...+.|++++..+........ .. .++    .+.|.|......| |.|+|.+.|..+.......+
T Consensus       161 L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~-~~-~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l  234 (248)
T 3u2s_H          161 LGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  234 (248)
T ss_dssp             EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-EC-TTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEEeeEECCCeEEEEeECCccCceeecCce-EC-CCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEE
Confidence            99999874 4 368999998754221100001 11 111    2468888888888 99999999987765544433

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.65  E-value=9.2e-16  Score=138.56  Aligned_cols=177  Identities=14%  Similarity=0.166  Sum_probs=113.9

Q ss_pred             CceEEccCCcEEEEEEEEee--cCCeEEEEECCE-----Ec--------------cCCCCceEEEcCCCCeEEEEECcCC
Q psy16852        113 KPVIAEAQSPATLKATVTGR--PTPSICWYRGKE-----EI--------------LPDNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~-----~~--------------~~~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      ..+.+.+|++++|.|.+.+.  +...+.||+...     .+              ....++.+..+...+..+|.|.+++
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLK   87 (253)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            45678899999999999763  357899998421     11              0113444444444567889999999


Q ss_pred             CCCCeEEEEEEEcCC----ceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cCCC-eEEE
Q psy16852        172 PQDEAVYSVKAVNTF----GRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTP-EVKW  245 (579)
Q Consensus       172 ~~d~G~Y~C~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W  245 (579)
                      .+|+|.|+|.+.+..    ........+.|...       ...+|.+........+..|+.++|.|.+.+ .|.+ .+.|
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W  160 (253)
T 3liz_H           88 SEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAA-------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW  160 (253)
T ss_dssp             GGGCEEEEEEECCBTTTBCCEECCCEEEEECSS-------CCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEE
T ss_pred             hhhCEEEEEEEecCCcceeeEECCCEEEEEecc-------CCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEE
Confidence            999999999998752    11122234444311       123555543333334567999999999998 6766 8999


Q ss_pred             EECCEEeccCc---e---EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEEE
Q psy16852        246 FKNGKEIVSKD---I---ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVT  297 (579)
Q Consensus       246 ~~~~~~i~~~~---~---~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~~  297 (579)
                      ++++..+....   .   ......+.|.|.....+| |.|+|.|.|..+.......+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~  217 (253)
T 3liz_H          161 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  217 (253)
T ss_dssp             GGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEec
Confidence            99886321100   0   112223679999999999 999999999887665554443

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.65  E-value=1.1e-15  Score=114.08  Aligned_cols=90  Identities=16%  Similarity=0.335  Sum_probs=74.5

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCC--EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      +|.+..++....+.+|+.+.|.|.+.|.|.|.+.|++++  ..+....  .+.                           
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~---------------------------   52 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVD---------------------------   52 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEE---------------------------
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEE---------------------------
Confidence            677777778888999999999999999999999999998  7764331  111                           


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              .....+.|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus        53 --------~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   93 (93)
T 1wit_A           53 --------AKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             --------EETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             --------ecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEEC
Confidence                    12344669999999999999999999999999999988863

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.65  E-value=3.7e-15  Score=112.82  Aligned_cols=93  Identities=25%  Similarity=0.381  Sum_probs=79.5

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..                           
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~---------------------------   57 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE---------------------------   57 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEE---------------------------
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEE---------------------------
Confidence            36777777788899999999999999999999999999999987666554432                           


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ++..+.|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus        58 --------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           58 --------DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             --------ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             --------eCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEE
Confidence                    3345569999999999999999999999999999999885

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.65  E-value=4.2e-16  Score=159.60  Aligned_cols=168  Identities=17%  Similarity=0.311  Sum_probs=118.6

Q ss_pred             cCceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecC------------CCCEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852         13 IQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHA------------TEHYLITTVESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      ...+.+.+|++++|.|.+ .+.|.+.++||+++..+..            ..+..+  . ...+|.|.+++.+|+|.|+|
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~--~-~~~~L~i~~v~~~D~G~Y~C  449 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV--L-PNGSLFLPAVGIQDEGIFRC  449 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE--C-TTSCEEESSCCGGGCEEEEE
T ss_pred             hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE--c-CCceEEEeccccccCeEEEE
Confidence            345789999999999999 7778889999998753210            112111  1 22479999999999999999


Q ss_pred             EEEcCCeee-EEEEEEEEEecccCCCCCceecCCCceEEccCCc-EEEEEEEEe-ecCCeEEEEECCEEccCCCCceEE-
Q psy16852         80 KATNIGGVA-TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP-ATLKATVTG-RPTPSICWYRGKEEILPDNGHTME-  155 (579)
Q Consensus        80 ~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~-  155 (579)
                      .+.+..+.. ...+.|.|...+.   .|.+..... . +.+|+. +.|.|.+.+ +|.+.|+|++++..+......... 
T Consensus       450 ~~~n~~~~~~~~~~~l~V~~~~~---~p~i~~~~~-~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~  524 (581)
T 3o3u_N          450 QAMNRNGKETKSNYRVRVYQIPG---KPEIVDSAS-E-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVK  524 (581)
T ss_dssp             EEECTTSCEEEEEEEEEEEBCCC---CCEEESCCS-E-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEE
T ss_pred             EEEcCCCceeEEEEEEEEEcCCC---CCEEEcCCc-c-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEE
Confidence            999988876 6678888876532   334433222 2 445554 467999987 599999999999988754332211 


Q ss_pred             ----EcCCCC----eEEEEECcCC-CCCCeEEEEEEEcCCce
Q psy16852        156 ----FNPTTG----ECVLSISEAT-PQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       156 ----~~~~~~----~~~l~i~~~~-~~d~G~Y~C~~~~~~~~  188 (579)
                          .+...|    .++|.|..++ .++.|.|+|.++|....
T Consensus       525 ~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          525 EQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             eeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence                111222    3579999998 55588999999998643

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.64  E-value=3.7e-15  Score=136.75  Aligned_cols=175  Identities=13%  Similarity=0.154  Sum_probs=112.5

Q ss_pred             CCceEEccCCcEEEEEEEEee--cCCeEEEEECCEE--cc-----------------CCCCceEEEcCCCCeEEEEECcC
Q psy16852        112 LKPVIAEAQSPATLKATVTGR--PTPSICWYRGKEE--IL-----------------PDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +..+.+.+|++++|.|.+.+.  +.+.+.||+....  ..                 ...++.+..+...+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            566788899999999999764  5589999984211  00                 01244444445566789999999


Q ss_pred             CCCCCeEEEEEEEcCC---------ceeEEEEEEEEee-ccc---cCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc
Q psy16852        171 TPQDEAVYSVKAVNTF---------GRAECRANLVLRK-ATT---IDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG  237 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~---------~~~~~~~~~~v~~-~~~---~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~  237 (579)
                      +.+|+|.|+|.+.+..         ........+.+.. ...   ........++.+...+. ..+.+|++++|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            9999999999998861         1111223344432 000   00000112344444444 67899999999999987


Q ss_pred             -cC-CCeEEEEEC--CEEec-------------cCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        238 -TP-TPEVKWFKN--GKEIV-------------SKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       238 -~p-~~~v~W~~~--~~~i~-------------~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                       .+ .+.+.|++.  +..+.             ...  .........|.|.+++.+|+|.|.|.+.+..
T Consensus       166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence             44 368999983  22111             011  1223455679999999999999999998865

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.64  E-value=1.8e-15  Score=134.47  Aligned_cols=169  Identities=18%  Similarity=0.175  Sum_probs=103.3

Q ss_pred             eEEEeee-CC-C-eEEEEECCEEc-cCCCeEEEEECCCC----eEEEEEcccCCCCCEEEEEEEEcCceeEEEEEEEEEE
Q psy16852        328 PVVVTGK-PT-P-LVTWSHDGTPM-KEGKEVTIYQDTDG----LCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE  399 (579)
Q Consensus       328 ~~~~~g~-p~-~-~i~W~~~~~~~-~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  399 (579)
                      .|.+.|. |. + .++|+++|..+ ....... ....++    .+.|.|.++..+|+|.|+|.|.|..+..  ...+.|.
T Consensus        34 ~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~-~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~--~~~~~v~  110 (231)
T 2w59_A           34 RCLVVNLPSDSSLSVTWTREKSGNLRPDPMVL-QEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPL--PLSKSVY  110 (231)
T ss_dssp             EEEEEEESCCTTCEEEEECSSSSCCCCCCCEE-EECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSS--CEEEEEC
T ss_pred             EEEEeCccCCCCeEEEEEcCCeeccccccccc-eECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCC--ceEEEEe
Confidence            4667775 53 4 99999999877 3322221 122222    2479999999999999999999987642  3334443


Q ss_pred             ecccCCCCCeeec-CCCceeeecCCCeEEEEEEEee-C-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccC--
Q psy16852        400 EKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-P-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP--  474 (579)
Q Consensus       400 ~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~--  474 (579)
                      .......+|.+.. .+....+ .|+.++|.|.+.|+ | .+.|.|+++|..+..+......         +.......  
T Consensus       111 ~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~---------~~~~~~~~~~  180 (231)
T 2w59_A          111 RNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTA---------VLPEERTANG  180 (231)
T ss_dssp             CCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECC---------CEECCTTSCC
T ss_pred             cCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCc---------cccCcccccc
Confidence            2111113555543 2222223 35579999999996 4 3699999999988544211000         00000000  


Q ss_pred             --CCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        475 --QDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       475 --~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                        .|.|.|...              +.|.|.....+|.|.|+|.|.|....
T Consensus       181 ~~~d~gt~~~~--------------s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          181 AGGDGDTFFVY--------------SKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             ---CCCCEEEE--------------EEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             cCCCCCeEEEE--------------EEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence              122445333              44999999999999999999998764

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.64  E-value=2.7e-16  Score=139.53  Aligned_cols=199  Identities=17%  Similarity=0.165  Sum_probs=108.1

Q ss_pred             EEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceE-EccCCcEEEEEEEEeec----CCeEEEEECCEEccCC
Q psy16852         75 GVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI-AEAQSPATLKATVTGRP----TPSICWYRGKEEILPD  149 (579)
Q Consensus        75 G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~p----~~~i~W~~~~~~~~~~  149 (579)
                      |.|.|.+.+..+....  ...+      ..|..+...+.... +..|+.++|.|.+.+++    ...|+|++++..+...
T Consensus         1 ~~~~~~~~~~~~~c~~--~~~~------~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~   72 (240)
T 4acp_A            1 GTKSCDKTHTCPPCPA--PELL------GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA   72 (240)
T ss_dssp             ------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCC
T ss_pred             CceeeeeeecCCCCCc--cccC------CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCc
Confidence            7899999886553111  1001      01223333444444 55699999999999864    3489999999987543


Q ss_pred             CCceEEEcCC---CCeEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCC
Q psy16852        150 NGHTMEFNPT---TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKD  226 (579)
Q Consensus       150 ~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g  226 (579)
                      ..........   ...+.|.|.....+|.|.|+|.+.+..+.......+.+..       .+..+|.+...+.......|
T Consensus        73 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~-------~~~~~P~V~v~~~~~~~~~g  145 (240)
T 4acp_A           73 KTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK-------GQPREPQVYTLPPSRDELTK  145 (240)
T ss_dssp             EECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC-------SCCBCCEEEEECCCGGGGGS
T ss_pred             eeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC-------CCCCCCEEEEECCChHHhcC
Confidence            1111111100   1124688887777889999999999876433332222110       12345655544333223348


Q ss_pred             CeEEEEEEEEc-cCCC-eEEEEECCEEeccCc---eE-----EeCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852        227 STVTLEAEYTG-TPTP-EVKWFKNGKEIVSKD---IE-----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAG  288 (579)
Q Consensus       227 ~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~---~~-----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g  288 (579)
                      +.++|.|.+.+ +|.+ .+.|+++|..+....   ..     .....+.|.+.....++.|.|+|+|.+..-
T Consensus       146 ~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          146 NQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            99999999998 5654 899999999875321   00     111234566766666688999999998764

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=3.3e-15  Score=117.07  Aligned_cols=94  Identities=19%  Similarity=0.282  Sum_probs=81.4

Q ss_pred             CCCcccc---ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          5 LAPRFIE---KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         5 ~~p~~~~---~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      .+|.|..   .+..+.+.+|+.++|.|.+.|.|.+.+.|+++|..+. ..++.+........|.|.+++.+|+|.|+|.|
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   98 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSV   98 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence            4777765   3577999999999999999999999999999999997 45556666667788999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEec
Q psy16852         82 TNIGGVATCSANLIVLEK   99 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~   99 (579)
                      .|..|.....+.|.|.++
T Consensus        99 ~N~~G~~~~~~~l~V~~~  116 (118)
T 2e7c_A           99 QIENMKDTATIRIRVVEK  116 (118)
T ss_dssp             ECSSCEECCEEEEEEECC
T ss_pred             EeCCCeEEEEEEEEEEcC
Confidence            999998888888888754

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=118.06  Aligned_cols=97  Identities=32%  Similarity=0.560  Sum_probs=84.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-CCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTV-ESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ..||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+.. ..++.+... .+...|.|.+++.+|+|.|+|.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            4689999999999999999999999999999999999999999875 456665554 34568999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEecc
Q psy16852         82 TNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~  100 (579)
                      .|..|.....+.|.|...+
T Consensus        86 ~N~~g~~~~~~~l~V~~~~  104 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAVN  104 (110)
T ss_dssp             ECTTCCEEECCCEEEECCS
T ss_pred             EECCCeEEEEEEEEEECCC
Confidence            9999998888888887654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.64  E-value=4.3e-15  Score=112.40  Aligned_cols=93  Identities=26%  Similarity=0.447  Sum_probs=77.2

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      +|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....+...                              
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~------------------------------   54 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA------------------------------   54 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEE------------------------------
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEE------------------------------
Confidence            67777777788899999999999999999999999999998865443221                              


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                          +..++..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        55 ----~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           55 ----EEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR   97 (99)
T ss_dssp             ----EECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ----EECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEEE
Confidence                1123334569999999999999999999999999999999875

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.64  E-value=3.5e-16  Score=119.63  Aligned_cols=95  Identities=28%  Similarity=0.481  Sum_probs=86.3

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      ...+|.|+..|.++.+.+|++++|.|.+.|.|.+.+.|+++|..+....++.........+|.|.+++.+|+|.|+|.|.
T Consensus        11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence            45788999999999999999999999999999999999999999988888887777778899999999999999999999


Q ss_pred             cCCeeeEEEEEEEEE
Q psy16852         83 NIGGVATCSANLIVL   97 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~   97 (579)
                      |..|.....+.|.|.
T Consensus        91 N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           91 NSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CSSCBCCEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999988888877773

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.64  E-value=4.3e-15  Score=132.04  Aligned_cols=181  Identities=13%  Similarity=0.183  Sum_probs=114.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee--------------cCCCCEEEEEeC--CEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL--------------HATEHYLITTVE--SVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~--------------~~~~~~~~~~~~--~~~~L~i~   67 (579)
                      ..|..+.+.+|++++|.|.+.+.  ....+.|||..  .   .+              ....++.+....  ...+|+|.
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (230)
T 3n9g_H            5 VQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELS   84 (230)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            34667999999999999999752  34579999832  1   11              012456555443  46789999


Q ss_pred             CCCCCCCEEEEEEEEcCC-----e---eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c-CCeE
Q psy16852         68 NPTKEDIGVYTCKATNIG-----G---VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-TPSI  137 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~-----g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i  137 (579)
                      +++.+|+|.|+|.+.+..     +   .....+.+.|...+  ..+|.+........+.+|+.++|.|.+.+. | .+.+
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v  162 (230)
T 3n9g_H           85 SLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  162 (230)
T ss_dssp             SCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC--CBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEE
T ss_pred             CCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC--CCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEE
Confidence            999999999999998753     1   11133456665322  233444432223334589999999999875 4 3579


Q ss_pred             EEEECCEEccCCCCc-eEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy16852        138 CWYRGKEEILPDNGH-TMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL  197 (579)
Q Consensus       138 ~W~~~~~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~v  197 (579)
                      .|  ++..+...... ..... .++    .+.|.|.....+| |.|+|.+.|..+.......+.+
T Consensus       163 ~W--~~~~~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v  223 (230)
T 3n9g_H          163 SW--NSGALTSGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  223 (230)
T ss_dssp             EE--GGGTBCTTEEECCCEEC-TTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EE--CCcccCCCeEeCCceEC-CCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccC
Confidence            99  44433211000 00011 111    2478999999999 9999999998776555444433

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.64  E-value=4.3e-15  Score=129.32  Aligned_cols=167  Identities=14%  Similarity=0.166  Sum_probs=107.7

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E---Eec-------CCCCEEEEEe---CCEEEEEEcCCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T---ELH-------ATEHYLITTV---ESVSTLEIINPTKED   73 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~---~~~-------~~~~~~~~~~---~~~~~L~i~~~~~~d   73 (579)
                      +...|..+.+.+|++++|.|.+.+.. +.+.|||..  .   .+.       ...++.....   .+...|+|.+++.+|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            55678889999999999999997654 489999843  1   111       2355665544   456899999999999


Q ss_pred             CEEEEEEEEcCCe---------e--eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEE
Q psy16852         74 IGVYTCKATNIGG---------V--ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWY  140 (579)
Q Consensus        74 ~G~Y~C~~~~~~g---------~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~  140 (579)
                      +|.|+|.+.+..+         .  ....+.|.|........+|.+       .+..+ .++|.|.+.++ |. +.|.|+
T Consensus        83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v-------~~~~~-~~~l~C~~~g~~P~~~~v~W~  154 (207)
T 1ypz_E           83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSV-------FIMKN-GTNVACLVKDFYPKEVTISLR  154 (207)
T ss_dssp             CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEE-------EEEEE-TTEEEEEEEEESSSCCEEEEE
T ss_pred             CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeE-------EEeCC-CCeEEEEEeeEeCCCeEEEEe
Confidence            9999999987532         1  113456777643211122222       22222 37999999876 43 799999


Q ss_pred             ECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCce
Q psy16852        141 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGR  188 (579)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  188 (579)
                      ++ ..+..... ..... .++...+. .....+|.|.|+|.+.|..+.
T Consensus       155 ~~-~~l~~~~~-~~~~~-~~g~y~~~-~~~~~~~~~~ytC~v~~~~~~  198 (207)
T 1ypz_E          155 SS-KKIVEFDP-AIVIS-PSGKYSAV-KLGQYGDSNSVTCSVQHNSET  198 (207)
T ss_dssp             CS-SEEEECCC-EEEEC-TTSSEEEE-ECEEESSTTTCEEEEEETTEE
T ss_pred             cC-CcccCCcc-ceEEc-CCCcEEEE-EeecccCCCcEEEEEEECCcc
Confidence            99 66543221 12222 23333333 223336789999999998654

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.63  E-value=3.6e-16  Score=138.66  Aligned_cols=180  Identities=16%  Similarity=0.168  Sum_probs=108.6

Q ss_pred             CCccccccCcee-eeCCCCEEEEEEEEeeC----CCeeEEEECCEEecCCCCEEEEE--eC---CEEEEEEcCCCCCCCE
Q psy16852          6 APRFIEKIQPVV-SHQEQPALFTCKVEGHP----LPTMTWQKDGTELHATEHYLITT--VE---SVSTLEIINPTKEDIG   75 (579)
Q Consensus         6 ~p~~~~~p~~~~-v~~G~~~~l~C~~~~~~----~~~v~W~~~g~~~~~~~~~~~~~--~~---~~~~L~i~~~~~~d~G   75 (579)
                      |+.++..|.... +..|+.++|.|.+.|..    ...|+|+|||..+..........  ++   ..+.|.|.....+|+|
T Consensus        23 P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~  102 (240)
T 4acp_A           23 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK  102 (240)
T ss_dssp             CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTC
T ss_pred             CEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCC
Confidence            344455566666 66799999999999864    33799999999885321000000  01   1257888877788899


Q ss_pred             EEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCCCce
Q psy16852         76 VYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHT  153 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~  153 (579)
                      .|+|+|.+..+.......+...  .....+|.+..........+|+.++|.|.+.++ |. ..+.|++++..+.......
T Consensus       103 ~YtC~v~h~~~~~~~~~~i~~~--~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~  180 (240)
T 4acp_A          103 EYKCKVSNKALPAPIEKTISKA--KGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATP  180 (240)
T ss_dssp             CEEEEEECC----CEEEEECCC--CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECC
T ss_pred             EEEEEEEcCCCCcccccccccc--CCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccC
Confidence            9999999977633222222210  011234444433322222358999999999885 54 4899999998864221111


Q ss_pred             EEEcCCCC---eEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        154 MEFNPTTG---ECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       154 ~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      ...+..+.   .+.|.+......+.|.|+|.+.+...
T Consensus       181 ~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          181 PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            11111111   24567766666788999999998754

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.63  E-value=2.5e-15  Score=137.18  Aligned_cols=177  Identities=13%  Similarity=0.147  Sum_probs=110.9

Q ss_pred             CceecCCCceEEccCCcEEEEEEEEeec-----CCeEEEEECC--E---Ecc---------CCCCceEEEcCCCCeEEEE
Q psy16852        106 PKFTKPLKPVIAEAQSPATLKATVTGRP-----TPSICWYRGK--E---EIL---------PDNGHTMEFNPTTGECVLS  166 (579)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~--~---~~~---------~~~~~~~~~~~~~~~~~l~  166 (579)
                      +.+...+..+.+.+|++++|.|.+.+.+     .+.+.||++.  .   .+.         ...++..  ....+..+|.
T Consensus        16 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~--~~~~~~~~L~   93 (268)
T 1x9q_A           16 VVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSG--SGSGTDFTLK   93 (268)
T ss_dssp             CCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETTEEEEE
T ss_pred             ceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEE--EcCCCEEEEE
Confidence            3445556677889999999999998776     4799999853  1   111         0122222  2234567899


Q ss_pred             ECcCCCCCCeEEEEEEEcCCceeE-EEEEEEEeeccccCCCCccCCC--------------eEeccCCceeeCCCCeEEE
Q psy16852        167 ISEATPQDEAVYSVKAVNTFGRAE-CRANLVLRKATTIDKPRVLEAP--------------TIVRPLQALLVPKDSTVTL  231 (579)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~p--------------~~~~~~~~~~~~~g~~~~l  231 (579)
                      |.+++.+|+|.|+|.+.+..+... ....+.|........ .+ .+|              .....+....+.+|+.++|
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~-p~-~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L  171 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAK-KD-AAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL  171 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC--------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCC-cc-ccccccccccccccccceEEECCCceEecCCCcEEE
Confidence            999999999999999988754211 122333332110000 00 011              1222234567889999999


Q ss_pred             EEEEEccCC--CeEEEEEC--CEEec--------------------cCceEEe----CCeEEEEEcccCCCCCeEEEEEE
Q psy16852        232 EAEYTGTPT--PEVKWFKN--GKEIV--------------------SKDIETK----DNVTKLVIKQTTKKTTGKYEIRV  283 (579)
Q Consensus       232 ~C~~~~~p~--~~v~W~~~--~~~i~--------------------~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~a  283 (579)
                      .|.+.+.+.  +.+.|+++  +..+.                    .......    .....|.|.+++.+|+|.|+|.|
T Consensus       172 ~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a  251 (268)
T 1x9q_A          172 SCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTG  251 (268)
T ss_dssp             EEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            999998653  68999984  22210                    0111111    23468999999999999999999


Q ss_pred             EcC
Q psy16852        284 VNE  286 (579)
Q Consensus       284 ~n~  286 (579)
                      .+.
T Consensus       252 ~~~  254 (268)
T 1x9q_A          252 ASY  254 (268)
T ss_dssp             EET
T ss_pred             ccC
Confidence            874

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.63  E-value=1.1e-15  Score=134.27  Aligned_cols=173  Identities=17%  Similarity=0.254  Sum_probs=108.2

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEc---c-------------CCCCceEEEcCCCCeEEEEECcCCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEI---L-------------PDNGHTMEFNPTTGECVLSISEATP  172 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~---~-------------~~~~~~~~~~~~~~~~~l~i~~~~~  172 (579)
                      ..+.+.+|++++|.|.+.+.+  .+.+.||++.  ..+   .             ...+..+..+...+..+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (215)
T ss_dssp             CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCG
T ss_pred             CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCc
Confidence            456788999999999998754  4789999853  111   0             0122333333344568999999999


Q ss_pred             CCCeEEEEEEEcCCce---eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEE
Q psy16852        173 QDEAVYSVKAVNTFGR---AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFK  247 (579)
Q Consensus       173 ~d~G~Y~C~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~  247 (579)
                      +|+|.|+|.+.+..+.   ......+.|...       ...+|.+........+..|+.++|.|.+.+. |.+ .+.|++
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~-------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  160 (215)
T 1c5d_H           88 EDTAIYFCTREDGWNYFDYWGPGTMVTVSSA-------QTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNS  160 (215)
T ss_dssp             GGCEEEEEEECCSSSCSCCBCCCEEEEECSS-------CCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ccCEEEEEEEecCCcccceEcCCEEEEecCC-------CCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEcc
Confidence            9999999999886421   112234444321       1123444332222235689999999999986 877 999999


Q ss_pred             CCEEeccCc--eEEeCCeEEE--EEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852        248 NGKEIVSKD--IETKDNVTKL--VIKQTTKKTTGKYEIRVVNEAGEARTS  293 (579)
Q Consensus       248 ~~~~i~~~~--~~~~~~~~~l--~i~~~~~~d~G~y~C~a~n~~g~~~~~  293 (579)
                      ++..+....  .....+...+  .+.....+| |.|+|.|.|..+.....
T Consensus       161 ~g~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~  209 (215)
T 1c5d_H          161 GALSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVD  209 (215)
T ss_dssp             GTTCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred             CCccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEE
Confidence            886543111  1111122111  123444456 99999999988765443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.63  E-value=4.2e-15  Score=112.72  Aligned_cols=93  Identities=24%  Similarity=0.457  Sum_probs=77.3

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      +|.+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+....+..+..                            
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~----------------------------   56 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIV----------------------------   56 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEE----------------------------
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEE----------------------------
Confidence            6777777778889999999999999999999999999999887655433221                            


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                            .....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        57 ------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           57 ------SEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL   97 (100)
T ss_dssp             ------ETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ------cCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEE
Confidence                  11223469999999999999999999999999999999986

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.63  E-value=6.4e-15  Score=110.86  Aligned_cols=91  Identities=29%  Similarity=0.377  Sum_probs=81.8

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      .+..+|.++.+.+|+.++|.|.+.+. |.+.+.||+++..+....++.+....+...|.|.+++.+|+|.|+|.+.|..|
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence            35567889999999999999999997 88899999999999888888887777788999999999999999999999999


Q ss_pred             eeEEEEEEEEEe
Q psy16852         87 VATCSANLIVLE   98 (579)
Q Consensus        87 ~~~~~~~~~v~~   98 (579)
                      .....+.|.|.+
T Consensus        83 ~~~~~~~l~V~~   94 (97)
T 2bk8_A           83 EDSSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEEEETT
T ss_pred             eEeEEEEEEEEe
Confidence            988888888753

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.63  E-value=6.6e-16  Score=138.94  Aligned_cols=170  Identities=14%  Similarity=0.168  Sum_probs=98.3

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECC--E--E-cc--------------CCCCceEEEcCCCCeEEEEECcCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E--E-IL--------------PDNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~--~-~~--------------~~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      ..+.+.+|++++|.|.+.+.+  .+.+.||+..  .  . +.              ...++.+..+...+...|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            8 GGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            356788999999999998765  5789999853  1  1 10              123344444444567899999999


Q ss_pred             CCCCeEEEEEEEcCCce---------e--E--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc
Q psy16852        172 PQDEAVYSVKAVNTFGR---------A--E--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT  238 (579)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~---------~--~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  238 (579)
                      .+|+|.|.|.+.+..+.         .  .  ....+.|...       ...+|.+........+..|+.++|.|.+.+.
T Consensus        88 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~-------~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~  160 (257)
T 3bn9_D           88 AEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA-------STKGPSVFPLAPSSKSTSGGTAALGCLVKDY  160 (257)
T ss_dssp             GGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS-------CCBCCEECCCCC-----------CCCEEEEE
T ss_pred             hhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC-------CCcCCcEEEecCcccccCCCcEEEEEEEeeE
Confidence            99999999999987541         1  1  1234444320       1124444332222235679999999999985


Q ss_pred             -CCC-eEEEEECCEEeccCc---eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCCeee
Q psy16852        239 -PTP-EVKWFKNGKEIVSKD---IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       239 -p~~-~v~W~~~~~~i~~~~---~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~  290 (579)
                       |.+ .+.|++++..+....   ..    .....+.|.|.+...+| |.|+|.|.|.....
T Consensus       161 ~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~  220 (257)
T 3bn9_D          161 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  220 (257)
T ss_dssp             BSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred             ECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence             777 999999987632110   10    01123467888887777 99999999976543

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.63  E-value=1.4e-13  Score=117.68  Aligned_cols=196  Identities=16%  Similarity=0.256  Sum_probs=125.5

Q ss_pred             CCceeeCCCCeEEEEEEEEc-cC---CCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852        218 LQALLVPKDSTVTLEAEYTG-TP---TPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS  293 (579)
Q Consensus       218 ~~~~~~~~g~~~~l~C~~~~-~p---~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~  293 (579)
                      |....+..|+.++|+|.+.+ .|   +-.++|+|||.++...       ...|.+..+...++|.|+|.+.+..|....+
T Consensus         9 P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-------T~tLti~s~t~sdSG~YqCvVTDa~Gcs~tS   81 (304)
T 3shs_A            9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATLTVADATSENAGSYKVTVQDTDTMTSVE   81 (304)
T ss_dssp             ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEEETTTCCEEE
T ss_pred             CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-------cceEEeeeccccCCeEEEEEEEECCCCeeee
Confidence            44456888999999999875 45   3389999999887542       2478999999999999999999988876655


Q ss_pred             EEEEEEeccceeeeeeee--eeccccCceeeeecCeeEEE--e-eeC-----CCeEEEEECCEEccCCCeEEEEECCCCe
Q psy16852        294 GSVTITVAEAETVMMDVR--VESHPTASFQWFIHSEPVVV--T-GKP-----TPLVTWSHDGTPMKEGKEVTIYQDTDGL  363 (579)
Q Consensus       294 ~~~~v~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~--~-g~p-----~~~i~W~~~~~~~~~~~~~~~~~~~~~~  363 (579)
                      ..+.|.......+.+.-.  +.......+.     +.+.+  . |.|     ...++|++++..+....           
T Consensus        82 s~VtVT~~a~l~i~it~P~s~~vssg~sVt-----L~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq-----------  145 (304)
T 3shs_A           82 SEVFLMEEAELIVNITEPQHFYVSSQTDVE-----LHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ-----------  145 (304)
T ss_dssp             CCCEEECBCCEEEEESSCSEEEECSSCCEE-----EEEEEEETTSCCSSTTCCCEEEEEETTEEEESSS-----------
T ss_pred             eeEEEeccCceeEEecCCCceeccCCCeEE-----EEEEEeccCCCCcccCCCceeEEeeCCeEccCcc-----------
Confidence            555554332222111100  0000001111     12233  3 344     46999999998775433           


Q ss_pred             EEEEEcccCCCCCEEEEEEEEcCcee--EEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEE--------e
Q psy16852        364 CKLAISEVFPENAGLYSCTAVNPVGE--AVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVT--------G  433 (579)
Q Consensus       364 ~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~--------g  433 (579)
                       .|++......++|.|+|.+.|..+.  .+.++.+.+..      .+.-........+..|+.+.|.-.+.        |
T Consensus       146 -~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (304)
T 3shs_A          146 -DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT------MNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSG  218 (304)
T ss_dssp             -EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE------EEEEECCCSEEEEETTSCEEECCEEEEECCSCCTT
T ss_pred             -ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc------cccchhheEeehhhcCcEEEEEEEEeeccccCCCC
Confidence             5777788889999999999998763  33444444433      22222223445688899999987654        2


Q ss_pred             eCCC--eEEEee
Q psy16852        434 RPTP--SICWYR  443 (579)
Q Consensus       434 ~p~~--~v~W~~  443 (579)
                      .|..  ++.|+.
T Consensus       219 ~~~~~~~~~~~~  230 (304)
T 3shs_A          219 MPNLTIKYNWYL  230 (304)
T ss_dssp             CCEEEEEEEEEE
T ss_pred             CCceEEEEEEEE
Confidence            3332  577875

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.63  E-value=5.8e-15  Score=141.40  Aligned_cols=177  Identities=16%  Similarity=0.178  Sum_probs=114.0

Q ss_pred             cccccCcee-eeCCCCEEEEEEEEee---CC-CeeEEEECCEEecCCCC-----EEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852          9 FIEKIQPVV-SHQEQPALFTCKVEGH---PL-PTMTWQKDGTELHATEH-----YLITTVESVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         9 ~~~~p~~~~-v~~G~~~~l~C~~~~~---~~-~~v~W~~~g~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~   78 (579)
                      ++..|.... +.+|+.++|.|.+.+.   |. ..|+|||++..+.....     +..........|.|..++.+|+|.|+
T Consensus       170 ~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~  249 (376)
T 2aty_A          170 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFK  249 (376)
T ss_pred             EEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEE
Confidence            344555555 8999999999999887   32 37999999866532110     00000112357999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c-CCeEEEEECCEEccCCCCceEEE
Q psy16852         79 CKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-TPSICWYRGKEEILPDNGHTMEF  156 (579)
Q Consensus        79 C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~  156 (579)
                      |.+.+..+.......+.+  ......+|.+...+......+|+.++|.|.+.++ | .+.|+|++++..+..........
T Consensus       250 C~~~~~~~~~~~~~~v~~--~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~  327 (376)
T 2aty_A          250 CRVNSAAFPAPIEKTISK--TKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIM  327 (376)
T ss_pred             EEEecCCCCCceEEEEcC--CCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceE
Confidence            999987654333223322  1111234555544444444468999999999885 3 46999999998874322221111


Q ss_pred             cCCC---CeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        157 NPTT---GECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       157 ~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      ....   -...|.|.....+|.|.|+|.|.|...
T Consensus       328 ~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          328 NTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             CCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            1111   124678888888889999999998754

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.62  E-value=1.3e-14  Score=129.71  Aligned_cols=193  Identities=16%  Similarity=0.224  Sum_probs=111.4

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEE-ECCEEc--cCCCeEEEEECCCCeEEEEEcccCC
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWS-HDGTPM--KEGKEVTIYQDTDGLCKLAISEVFP  373 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~-~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~  373 (579)
                      .+.+..|..+.|.|.+. .+...+.|+....     |.....+... .+....  ....++.+..+..+.+.|.|.+++.
T Consensus         8 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~-----~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            8 NKVAVTGGKVTLSCQQT-NNHNNMYWYRQDT-----GHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             EEEEETTCCEEEEEEES-SCCSEEEEEEECT-----TSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             eeEEeCCCcEEEEEEeC-CCCceEEEEEECC-----CCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            35577899999999863 2334444432210     0000001010 110000  0123444433334567999999999


Q ss_pred             CCCEEEEEEEEcCce-----eEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEee-CCC-eEEEeeCC
Q psy16852        374 ENAGLYSCTAVNPVG-----EAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGK  445 (579)
Q Consensus       374 ~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~  445 (579)
                      +|+|.|.|.+.+..+     .......|.|........+|.+.. .+....+..|+.++|.|.+.|. |.+ .+.|+++|
T Consensus        82 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  161 (238)
T 1bec_A           82 SQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  161 (238)
T ss_dssp             GGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETT
T ss_pred             ccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECC
Confidence            999999999998741     112334677765332233566653 3344456689999999999986 655 99999999


Q ss_pred             EEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCee
Q psy16852        446 EEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGS  523 (579)
Q Consensus       446 ~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  523 (579)
                      ..+..+.+..              ........|.|...              +.|.|.....+| .|.|+|.|.|....
T Consensus       162 ~~~~~~~~~~--------------~~~~~~~~g~~~~~--------------s~L~i~~~~~~d~~~~ytC~v~~~~l~  212 (238)
T 1bec_A          162 KEVHSGVSTD--------------PQAYKESNYSYCLS--------------SRLRVSATFWHNPRNHFRCQVQFHGLS  212 (238)
T ss_dssp             EEECTTEEEC--------------SSCEEEETTEEEEE--------------EEECCCHHHHTCTTCEEEEEEEECCCC
T ss_pred             EECCCceecc--------------cceEeCCCCCEEEE--------------EEEEEcHHHhccCCCeEEEEEEcCCCC
Confidence            9885432100              00011122344322              337777666655 67899999997443

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.62  E-value=1.4e-15  Score=132.80  Aligned_cols=164  Identities=16%  Similarity=0.163  Sum_probs=99.6

Q ss_pred             ccCCcEEEEEEEEeec----CCeEEEEECCEEccCCCCceEEEcCCCCe----EEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        118 EAQSPATLKATVTGRP----TPSICWYRGKEEILPDNGHTMEFNPTTGE----CVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       118 ~~g~~~~l~C~~~~~p----~~~i~W~~~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      .+|+.++|.|.+.+.+    .+.|.|++++..+.......... ..++.    ..|.|.....+|+|.|+|.+.|..+..
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~-~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE-QYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEE-CTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCcee-ccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence            6899999999998875    25999999998765432111111 11221    223444444455999999999987754


Q ss_pred             EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CCC-eEEEEECCEEeccCc---eEEe-CC-
Q psy16852        190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PTP-EVKWFKNGKEIVSKD---IETK-DN-  262 (579)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~i~~~~---~~~~-~~-  262 (579)
                      .....+.+.       ..+..+|.+...........|..+.|.|.+.|. |++ .+.|+++|..+....   .... ++ 
T Consensus        95 ~~~~~v~~~-------~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt  167 (207)
T 1l6x_A           95 PIEKTISKA-------KGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGS  167 (207)
T ss_dssp             CEEEEECCC-------CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSC
T ss_pred             ceEEEeccC-------CCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCC
Confidence            222222110       012245554433222222345669999999984 543 999999999876321   1111 11 


Q ss_pred             ---eEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        263 ---VTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       263 ---~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                         .+.|.+.....+|.|.|+|.|.|....
T Consensus       168 ~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          168 FFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence               134556555556899999999997643

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.62  E-value=7.3e-15  Score=121.08  Aligned_cols=98  Identities=35%  Similarity=0.530  Sum_probs=86.6

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ...||.|...|.++.+.+|+.++|.|.+.|.|.+.+.|||+|..+....++.+... .+...|.|.+++.+|+|.|+|.|
T Consensus        38 v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  117 (154)
T 1fhg_A           38 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA  117 (154)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEE
Confidence            34689999999999999999999999999999999999999999988777776654 34679999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEecc
Q psy16852         82 TNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~  100 (579)
                      .|..|.....+.|.|...+
T Consensus       118 ~N~~G~~~~~~~l~V~~~p  136 (154)
T 1fhg_A          118 VNSLGEATCTAELLVETMG  136 (154)
T ss_dssp             EETTEEEEEEEEEEEECC-
T ss_pred             EECCCeEEEEEEEEEeCcC
Confidence            9999998888889887543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=7.4e-16  Score=119.23  Aligned_cols=98  Identities=31%  Similarity=0.517  Sum_probs=85.7

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe-CCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV-ESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ..++|.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+........... .+..+|.|.+++.+|+|.|+|.|
T Consensus         6 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm3_A            6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA   85 (110)
T ss_dssp             CCCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEE
T ss_pred             CCCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEE
Confidence            35799999999999999999999999999999999999999998877665554433 33578999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEecc
Q psy16852         82 TNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~  100 (579)
                      .|..|.....+.|.|..++
T Consensus        86 ~n~~g~~~~~~~l~V~~~p  104 (110)
T 2dm3_A           86 TNRAGQNSFSLELVVAAKE  104 (110)
T ss_dssp             ECSSCEEEECCEEEEECCC
T ss_pred             ECCCCEEEEEEEEEEeCCC
Confidence            9999998888999998764

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.62  E-value=1.2e-15  Score=110.09  Aligned_cols=81  Identities=20%  Similarity=0.295  Sum_probs=70.1

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCS   91 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~   91 (579)
                      ++.++.+.+|+++.|.|.+.+ |.+.++|||||..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|    ...+
T Consensus         2 ~lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~   76 (84)
T 2lu7_A            2 HMTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRI   76 (84)
T ss_dssp             -CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEE
T ss_pred             CCeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEE
Confidence            467899999999999999965 77899999999999999999888888888999999999999999999855    3455


Q ss_pred             EEEEEE
Q psy16852         92 ANLIVL   97 (579)
Q Consensus        92 ~~~~v~   97 (579)
                      +.|.|.
T Consensus        77 a~l~V~   82 (84)
T 2lu7_A           77 FLVSVE   82 (84)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            667764

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.5e-15  Score=119.15  Aligned_cols=96  Identities=26%  Similarity=0.366  Sum_probs=82.5

Q ss_pred             CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      ....||.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+|+|..+.. ..++.... .  .+|.|.+++.+|+|.|+|.
T Consensus         4 ~~~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~--~~L~i~~v~~~D~G~Y~C~   80 (118)
T 2eo9_A            4 GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE-N--GVLQIRYAKLGDTGRYTCI   80 (118)
T ss_dssp             SCCCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE-T--TEEEEESCCGGGCCCEEEE
T ss_pred             CCCCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc-C--CEEEEccCCcCCCEEEEEE
Confidence            346799999999999999999999999999999999999999998864 44444432 2  3799999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEecc
Q psy16852         81 ATNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        81 ~~~~~g~~~~~~~~~v~~~~  100 (579)
                      |.|..|.....+.|.|.+.+
T Consensus        81 a~n~~g~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           81 ASTPSGEATWSAYIEVQEFG  100 (118)
T ss_dssp             EECSSCEEEEECCEEEECCS
T ss_pred             EEcCCCcEEEEEEEEEEeCC
Confidence            99999998888888888654

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=2.2e-15  Score=118.13  Aligned_cols=111  Identities=18%  Similarity=0.251  Sum_probs=85.8

Q ss_pred             CCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       405 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      ..+|.+...+....+.+|+.++|.|.+.|.|.+.+.|++++..+... .++.+..                         
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-------------------------   60 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE-------------------------   60 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE-------------------------
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc-------------------------
Confidence            35788888888889999999999999999999999999999887542 2222110                         


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCCceEEecCC
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPETAKVMDGQ  560 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~~~~~~~g~  560 (579)
                                   .+.|.|.+++.+|+|.|+|.|.|..|....++.|.|..       ...|.+...+.+.++..|.
T Consensus        61 -------------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-------~~~p~~~~~~~~~~~~~G~  117 (118)
T 2eo9_A           61 -------------NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE-------FGVPVQPPRPTDPNLIPSA  117 (118)
T ss_dssp             -------------TTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEEC-------CSCCCCCCCCCCCCCCCCC
T ss_pred             -------------CCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEe-------CCCCccCCCCCCCccCCCC
Confidence                         12599999999999999999999999999999999862       2334444555555555553

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.61  E-value=1.5e-14  Score=108.76  Aligned_cols=89  Identities=15%  Similarity=0.302  Sum_probs=74.7

Q ss_pred             eecCCCceeeecCCCeEEEEEEEee-CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce
Q psy16852        410 FTKPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE  488 (579)
Q Consensus       410 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~  488 (579)
                      +..++.+..+.+|+.++|.|.+.|. |.|.+.|++++..+..+.++.+..                              
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~------------------------------   53 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY------------------------------   53 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEE------------------------------
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEE------------------------------
Confidence            3445667889999999999999997 999999999999887666655432                              


Q ss_pred             eeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        489 TKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       489 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                           .+..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        54 -----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   93 (97)
T 2bk8_A           54 -----EDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK   93 (97)
T ss_dssp             -----ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEET
T ss_pred             -----cCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEEE
Confidence                 2334569999999999999999999999999999999885

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=3.2e-15  Score=112.52  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=74.9

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.|..++....+.+|+.+.|.|.+  .|.|.+.|+|+|..+..+.++.+..                           
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~---------------------------   56 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQ---------------------------   56 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEE---------------------------
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEE---------------------------
Confidence            47888888899999999999999999  8999999999999998777666543                           


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ++..+.|.|.++..+|+|.|+|.|.|.  ....++.|.|.
T Consensus        57 --------~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~   94 (100)
T 2yuz_A           57 --------KGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVI   94 (100)
T ss_dssp             --------CSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEE
T ss_pred             --------eCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEe
Confidence                    344566999999999999999999998  55667777765

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=3.2e-15  Score=113.04  Aligned_cols=91  Identities=32%  Similarity=0.551  Sum_probs=79.3

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      ...||.|...|.+..+.+|+.++|.|.+.+.|.+.+.|+++|..+.....   ........|.|.+++.+|+|.|+|.|.
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~   84 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHIQDALPEDHGTYTCLAE   84 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC---EEETTEEEEEECSCCTTCCBCEEEEEE
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce---EeeCCeEEEEECCCChhhCEEEEEEEE
Confidence            34689999999999999999999999999999999999999998875543   234566899999999999999999999


Q ss_pred             cCCeeeEEEEEEEE
Q psy16852         83 NIGGVATCSANLIV   96 (579)
Q Consensus        83 ~~~g~~~~~~~~~v   96 (579)
                      |..|.....+.|.|
T Consensus        85 N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           85 NALGQVSCSAWVTV   98 (99)
T ss_dssp             CSSCEEEEECCEEE
T ss_pred             ECCCeEEEEEEEEE
Confidence            99998877777765

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.61  E-value=3.4e-15  Score=111.69  Aligned_cols=89  Identities=18%  Similarity=0.368  Sum_probs=77.7

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +.-||.|...|.++.+.+|+.++|.|.+.+.| +.+.|+|+|..+....++...    ...|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~   80 (95)
T 2ckn_A            6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GEEVEVRDSIPADSGLYACVTS   80 (95)
T ss_dssp             SSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEE
T ss_pred             CCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CCEEEECCCChHHCEEEEEEec
Confidence            45678899999999999999999999999887 799999999998876665443    3589999999999999999999


Q ss_pred             cCCeeeEEEEEEEE
Q psy16852         83 NIGGVATCSANLIV   96 (579)
Q Consensus        83 ~~~g~~~~~~~~~v   96 (579)
                      |..|.....+.|.|
T Consensus        81 n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           81 SPSGSDTTYFSVNV   94 (95)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             cCCCcEEEEEEEEE
Confidence            99998888777766

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.61  E-value=8.7e-15  Score=108.24  Aligned_cols=88  Identities=18%  Similarity=0.256  Sum_probs=72.4

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.|..++.+..+.+|+.++|.|.+.+ |.+.+.|+|+|..+..+.++.+..                           
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~---------------------------   55 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIE---------------------------   55 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEE---------------------------
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEE---------------------------
Confidence            5788888899999999999999999985 567899999999998776665432                           


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ++..+.|.|.+++.+|+|.|+|.|.|.    ..++.|.|.
T Consensus        56 --------~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa~L~V~   91 (93)
T 1waa_A           56 --------DGKKHILILHNCQLGMTGEVSFQAANT----KSAANLKVK   91 (93)
T ss_dssp             --------ETTEEEEEECSCCGGGCEEEEEEETTE----EEEEEEEEE
T ss_pred             --------ECCEEEEEECCCChhhCEEEEEEECCC----cEEEEEEEE
Confidence                    445567999999999999999999874    456777765

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.61  E-value=7.2e-15  Score=132.81  Aligned_cols=195  Identities=14%  Similarity=0.119  Sum_probs=117.2

Q ss_pred             EEEeccceeeeeeeeeeccccCceeeeecCeeEEEeeeCCCeEEEEECCEEcc---CCC-eEEEEECCCCeEEEEEcccC
Q psy16852        297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMK---EGK-EVTIYQDTDGLCKLAISEVF  372 (579)
Q Consensus       297 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~W~~~~~~~~---~~~-~~~~~~~~~~~~~l~i~~~~  372 (579)
                      .+.+..|..+.|.|.....+...+.|+..     ..+.+...+.+..++....   ... ++....+....  |.|.+++
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~--L~I~~v~   82 (253)
T 3to4_D           10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQ-----DLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE--LRLQVAN   82 (253)
T ss_dssp             EEEEESSCCEEEEEECSCTTCCCEEEEEE-----ETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC--CEEEEES
T ss_pred             eEEEeCCCcEEEEEEeCCCCcceEEEEEE-----CCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe--EEEccCC
Confidence            35577899999999876666666666542     1122222233332221100   011 44444333322  9999999


Q ss_pred             CCCCEEEEEEEEcCce------eEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEEEEEEEe-eCCC-eEEEee
Q psy16852        373 PENAGLYSCTAVNPVG------EAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTG-RPTP-SICWYR  443 (579)
Q Consensus       373 ~~d~G~Y~C~a~n~~g------~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~v~W~~  443 (579)
                      .+|+|.|.|.+.+..+      .......|.|........+|.+.. .+....+..|+.++|.|.+.| .|.+ .+.|++
T Consensus        83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k  162 (253)
T 3to4_D           83 MSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  162 (253)
T ss_dssp             CSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             hhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence            9999999999987643      222344677765333334565543 233334456789999999998 6666 899999


Q ss_pred             CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCe
Q psy16852        444 GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAG  522 (579)
Q Consensus       444 ~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g  522 (579)
                      +|..+........          .......+...|.|...              +.|.|.....+| .|.|+|.|.|..-
T Consensus       163 ~g~~l~~~~~~~~----------~~~~~~~~~~~g~~~~~--------------s~l~i~~~~~~d~~~~ytC~v~h~~l  218 (253)
T 3to4_D          163 NGKEVHSGVSTDP----------QPLKEQPALNDSRYALS--------------SRLRVSATFWQNPRNHFRCQVQFYGL  218 (253)
T ss_dssp             TTEEECTTEEECS----------SCEESSTTCTTCCEEEE--------------EEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             CCEECCCceeccc----------ccccccccCCCCCEEEE--------------EEEEECHHHhccCCCEEEEEEEeCCC
Confidence            9998854321100          00111112244555443              348899888888 7799999999743

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.60  E-value=8.5e-15  Score=112.88  Aligned_cols=95  Identities=21%  Similarity=0.282  Sum_probs=77.9

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeC-------CEEEEEEcCCCCCCCEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-------SVSTLEIINPTKEDIGV   76 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~   76 (579)
                      .+||+|.+ ..   ...+..+.|.|.+.|.|.|.|+|+|||..+..+.+.......       ....|.|.+++.+|+|.
T Consensus         2 ~~pP~I~l-~~---~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   77 (126)
T 1he7_A            2 HMPASVQL-HT---AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN   77 (126)
T ss_dssp             CCCCCCCC-CC---CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEE
T ss_pred             CCCCEEEc-cC---CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEE
Confidence            47888722 22   337789999999999999999999999999887776544332       24789999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEEecccC
Q psy16852         77 YTCKATNIGGVATCSANLIVLEKEES  102 (579)
Q Consensus        77 Y~C~~~~~~g~~~~~~~~~v~~~~~~  102 (579)
                      |+|.|.|..|....++.+.|...|..
T Consensus        78 YtC~A~N~~G~~~~t~~l~v~~~P~~  103 (126)
T 1he7_A           78 YTLLAANPFGQASASIMAAFMDNPFE  103 (126)
T ss_dssp             EEEEEEETTEEEEEEEEECCCSCTTS
T ss_pred             EEEEEEECCCeEEEEEEEEEEcCCCC
Confidence            99999999999999999988876543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.60  E-value=1.4e-14  Score=119.34  Aligned_cols=94  Identities=27%  Similarity=0.502  Sum_probs=79.3

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.+...+....+..|+.++|.|.+.|.|.|.+.|++++..+....++.+..+                          
T Consensus        40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~--------------------------   93 (154)
T 1fhg_A           40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD--------------------------   93 (154)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEC--------------------------
T ss_pred             CCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEEC--------------------------
Confidence            477888777888999999999999999999999999999999877666554331                          


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus        94 --------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  133 (154)
T 1fhg_A           94 --------EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE  133 (154)
T ss_dssp             --------TTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             --------CCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEe
Confidence                    1123469999999999999999999999999999999875

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.60  E-value=1.7e-15  Score=116.93  Aligned_cols=94  Identities=28%  Similarity=0.352  Sum_probs=76.0

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEee---CCCeeEEEECCEE-ec--CCCCEEEEEe--C----CEEEEEEcCCCCC
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGTE-LH--ATEHYLITTV--E----SVSTLEIINPTKE   72 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~---~~~~v~W~~~g~~-~~--~~~~~~~~~~--~----~~~~L~i~~~~~~   72 (579)
                      .-|.|+..|.++.|.+|++++|.|.+.+.   |.|.|.|||+... +.  ...++.+...  .    ...+|+|.+++.+
T Consensus         6 ~~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   85 (126)
T 2dav_A            6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN   85 (126)
T ss_dssp             SSCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred             cccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcc
Confidence            34779999999999999999999999875   7889999997421 11  1344444321  1    2588999999999


Q ss_pred             CCEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852         73 DIGVYTCKATNIGGVATCSANLIVLE   98 (579)
Q Consensus        73 d~G~Y~C~~~~~~g~~~~~~~~~v~~   98 (579)
                      |+|.|+|+|.|..|..+..+.|+|.+
T Consensus        86 DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           86 FAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999999999999999999987

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.59  E-value=5.7e-15  Score=112.46  Aligned_cols=91  Identities=22%  Similarity=0.264  Sum_probs=78.3

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC--CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .|+.|...|.++.+.+|++++|.|.+.+ +.+.+.|||+|..+....  ++.+...+....|.|.+++.+|+|.|+|.|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   84 (103)
T 1x44_A            6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTT   84 (103)
T ss_dssp             SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred             CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEEC
Confidence            3555888999999999999999999977 668999999999998777  6788877788999999999999999999997


Q ss_pred             cCCeeeEEEEEEEEEecc
Q psy16852         83 NIGGVATCSANLIVLEKE  100 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~  100 (579)
                      |    ....+.|.|...+
T Consensus        85 n----~~~~~~l~V~~~p   98 (103)
T 1x44_A           85 G----GQSSAKLSVDLKS   98 (103)
T ss_dssp             T----EEEEEEEEEECCC
T ss_pred             C----CcEEEEEEEeCCC
Confidence            6    4666778887653

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=2.9e-15  Score=113.86  Aligned_cols=93  Identities=15%  Similarity=0.238  Sum_probs=80.4

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      ..||.|+..|.++.+.+|+.++|.|.+.+.+. +.+.|||||..+..+.++.+...+...+|.|.+++.+|+|.|+|.+.
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   85 (104)
T 2eny_A            6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR   85 (104)
T ss_dssp             CCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET
T ss_pred             cCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC
Confidence            35778999999999999999999999987764 47999999999988888888888888899999999999999999984


Q ss_pred             cCCeeeEEEEEEEEEecc
Q psy16852         83 NIGGVATCSANLIVLEKE  100 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~  100 (579)
                      +    ...++.|.|.++|
T Consensus        86 ~----~~~~a~L~V~~~p   99 (104)
T 2eny_A           86 G----LTSKASLIVRERS   99 (104)
T ss_dssp             T----EEEEECEEEECCC
T ss_pred             C----eeEEEEEEEeCCC
Confidence            3    5667888887643

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.59  E-value=2.7e-14  Score=128.86  Aligned_cols=150  Identities=15%  Similarity=0.210  Sum_probs=94.8

Q ss_pred             CeEEEEECCCCeEEEEEcccCCCCCEEEEEEEEcCc---eeEEEEEEEEEEecccCCCCCeeec-CCCceeeecCCCeEE
Q psy16852        352 KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV---GEAVAAATLAVEEKEESGEAPKFTK-PLKPVIAEAQSPATL  427 (579)
Q Consensus       352 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l  427 (579)
                      .++.......+...|.|.+++.+|+|.|.|.+.+..   ........|.|........+|.+.. .+....+..|+.++|
T Consensus        64 ~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L  143 (252)
T 1oga_E           64 EGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATL  143 (252)
T ss_dssp             TTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred             CcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEE
Confidence            344443333445689999999999999999999861   1222334577765322234666653 233344567999999


Q ss_pred             EEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeec
Q psy16852        428 KATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKI  505 (579)
Q Consensus       428 ~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~  505 (579)
                      .|.+.|. |.+ .|.|+++|..+..+.....          ...........|.|...              +.|.|...
T Consensus       144 ~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~----------~~~~~~~~~~~gt~~~~--------------s~L~i~~~  199 (252)
T 1oga_E          144 VCLATGFYPDHVELSWWVNGKEVHSGVSTDP----------QPLKEQPALNDSRYSLS--------------SRLRVSAT  199 (252)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEECSSEEECS----------SCEESCTTSTTCCEEEE--------------EEEEEEHH
T ss_pred             EEEEeeEcCCCcEEEEEECCEECCCCccccc----------ccccccccCCCCCEEEE--------------EEEEECHH
Confidence            9999986 654 9999999988754311000          00001122344555433              34888887


Q ss_pred             ccc-cceeEEEEEEeCCeeEE
Q psy16852        506 TRD-QIGDVTCRAENVAGSVT  525 (579)
Q Consensus       506 ~~~-d~G~Y~C~a~n~~g~~~  525 (579)
                      ..+ |.|.|+|.|.|..+...
T Consensus       200 ~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          200 FWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             HHTCTTCEEEEEEEECCBCTT
T ss_pred             HhccCCCEEEEEEEcCCCCCC
Confidence            764 57889999999866543

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=4.3e-15  Score=113.21  Aligned_cols=92  Identities=20%  Similarity=0.341  Sum_probs=81.2

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      ..||.|...|.++.+.+|+.++|.|.+.+ +.+.+.|+|+|..+....++.+...+....|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            46899999999999999999999999987 77799999999999888888888888788999999999999999999988


Q ss_pred             CCeeeEEEEEEEEEecc
Q psy16852         84 IGGVATCSANLIVLEKE  100 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~~  100 (579)
                          ....+.|.|..++
T Consensus        85 ----~~~~~~l~V~~~p   97 (103)
T 2edf_A           85 ----SKSTASLHVEEKA   97 (103)
T ss_dssp             ----CEEEEEEEECCCS
T ss_pred             ----CCcEEEEEEeCCC
Confidence                3566778887553

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.59  E-value=1.1e-14  Score=131.62  Aligned_cols=179  Identities=11%  Similarity=0.189  Sum_probs=110.3

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Ee--------------cCCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---EL--------------HATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~--------------~~~~~~~~~~~--~~~~~L~i~   67 (579)
                      ..|..+.+.+|++|+|.|.+.+..  ...+.|||..  .   .+              ....++.....  .+..+|+|.
T Consensus        28 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  107 (256)
T 3sob_H           28 VESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMN  107 (256)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEEC
Confidence            345678899999999999997532  3579999832  1   11              01245555433  356789999


Q ss_pred             CCCCCCCEEEEEEEEcCCe-----------eeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c-C
Q psy16852         68 NPTKEDIGVYTCKATNIGG-----------VATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-T  134 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~g-----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~  134 (579)
                      +++.+|+|.|+|.+.+..+           .....+.+.|...+  ..+|.+........+.+|+.++|.|.+.+. | +
T Consensus       108 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~  185 (256)
T 3sob_H          108 SLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  185 (256)
T ss_dssp             SCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSC--CBCCEEEEECCC-----TTEEEEEEEEEEEBSSC
T ss_pred             CCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCC--CCCCEEEEECCCcccccCCcEEEEEEEEEEECCC
Confidence            9999999999999986431           12233456665322  234444432233345689999999999774 4 3


Q ss_pred             CeEEEEECCEEccCCCCc-eEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy16852        135 PSICWYRGKEEILPDNGH-TMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECRANL  195 (579)
Q Consensus       135 ~~i~W~~~~~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  195 (579)
                      ..+.|  ++..+...... ..... .++    .+.|.|.....+| |.|+|.+.|..+.......+
T Consensus       186 ~~v~W--~~~~~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~  247 (256)
T 3sob_H          186 VTVSW--NSGALTSGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  247 (256)
T ss_dssp             CEEEE--GGGTBCTTEEECCCEEC-TTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             eEEEE--CCcccCCCeEeCCceeC-CCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEe
Confidence            58999  44333211000 00011 111    2468899999999 99999999987665544444

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=2.8e-15  Score=113.65  Aligned_cols=95  Identities=32%  Similarity=0.476  Sum_probs=80.3

Q ss_pred             CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-TEHYLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      ....||.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+++|..+.. ..++..   ....+|.|.+++.+|+|.|+|.
T Consensus         4 ~~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~   80 (100)
T 2edj_A            4 GSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI---QEQGTLQIKNLRISDTGTYTCV   80 (100)
T ss_dssp             SCCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE---CTTCCEEEESCCTTTCCEEEEE
T ss_pred             CCCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE---cCCCEEEEccCCcccCEEEEEE
Confidence            345789999999999999999999999999999999999999998873 333322   2235799999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEec
Q psy16852         81 ATNIGGVATCSANLIVLEK   99 (579)
Q Consensus        81 ~~~~~g~~~~~~~~~v~~~   99 (579)
                      |.|..|.....+.|.|.++
T Consensus        81 a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           81 ATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             EECSSCCCBCCEEEEEESC
T ss_pred             EEcCCCCEEEEEEEEEecC
Confidence            9999998888888888753

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.59  E-value=1.2e-14  Score=108.79  Aligned_cols=89  Identities=13%  Similarity=0.216  Sum_probs=75.1

Q ss_pred             CCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       404 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      ...+|.+...+....+.+|+.+.|.|.+.|.| |.+.|+++|..+..+.++.+    .                      
T Consensus         6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~----~----------------------   58 (95)
T 2ckn_A            6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI----T----------------------   58 (95)
T ss_dssp             SSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEE----C----------------------
T ss_pred             CCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEE----e----------------------
Confidence            34578888888888999999999999999998 79999999988865554332    0                      


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                                   .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        59 -------------~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           59 -------------GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             -------------SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -------------CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence                         234999999999999999999999999988888876

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.59  E-value=1.5e-16  Score=139.74  Aligned_cols=177  Identities=17%  Similarity=0.149  Sum_probs=109.2

Q ss_pred             CCccc-cccCceeeeCCCCEEEEEEEEeeCC---CeeEEEECCEEecCCC-CEEE-EEe---CCEEEEEEcCCCCCCCEE
Q psy16852          6 APRFI-EKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQKDGTELHATE-HYLI-TTV---ESVSTLEIINPTKEDIGV   76 (579)
Q Consensus         6 ~p~~~-~~p~~~~v~~G~~~~l~C~~~~~~~---~~v~W~~~g~~~~~~~-~~~~-~~~---~~~~~L~i~~~~~~d~G~   76 (579)
                      +|.+. ..|....+.+|+.++|.|.+.+.++   +.|.|  ++..+.... .... ...   .....|+|.+++.+|+|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~   80 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT   80 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence            45554 4588888999999999999988654   68999  443332110 0000 000   124678888889999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEEecccCCCCCceec-CCCceEEccCCcEEEEEEEEee-cC-CeEEEEECCEEccCCCCce
Q psy16852         77 YTCKATNIGGVATCSANLIVLEKEESGEAPKFTK-PLKPVIAEAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHT  153 (579)
Q Consensus        77 Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~  153 (579)
                      |+|.+.+..+.......+.+   .....+|.+.. .+....+.+|+.++|.|.+.|+ |+ +.|.|++++..+.......
T Consensus        81 Y~C~~~~~~~~~~~~~~i~~---~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  157 (214)
T 1ow0_A           81 FTCTAAYPESKTPLTATLSK---SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT  157 (214)
T ss_dssp             EEEEECCSSCSSCEEEEEEC---CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE
T ss_pred             EEEEEecCCCCCceeEeecc---CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee
Confidence            99999987654332233321   11123444432 2222335679999999999886 43 5999999998876542111


Q ss_pred             --EEEcC--CCCe----EEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        154 --MEFNP--TTGE----CVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       154 --~~~~~--~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                        .....  .++.    ..|.+.....++.|.|+|.|.|...
T Consensus       158 ~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          158 WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             CCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             cCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence              11110  2222    2344554444568999999999754

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.59  E-value=3.5e-14  Score=118.24  Aligned_cols=159  Identities=16%  Similarity=0.184  Sum_probs=108.3

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEEe-cCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTEL-HATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      +...|.+..|.+|+++.|+|.+....+..+.|.-  ++..+ ..+        .....|.|.+++. | |.|.|.+....
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~~--------~~~~~l~l~~vs~-~-g~y~C~~~c~~   71 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG--------NNRKVYELSNVQE-D-SQPMCYSNCPD   71 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEECSSS--------SSEEEEEEEEECS-C-BCCEEEEECSS
T ss_pred             eEEECCCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccEeccC--------CceeEEEEEecCc-C-CEEEEEEECCC
Confidence            3456788899999999999999643333477753  11122 111        2336789999983 4 99999997665


Q ss_pred             eeeEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEe-ecCC--eEEEEECCEEccCCCCceEEEcCCCCe
Q psy16852         86 GVATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTG-RPTP--SICWYRGKEEILPDNGHTMEFNPTTGE  162 (579)
Q Consensus        86 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~  162 (579)
                      ......+.|.|+..|     ......+.+..+.+|+.++|.|.+.+ .|..  .|+||+++..+....     .......
T Consensus        72 ~~~~~~~~l~V~~~P-----~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~-----~~~~~~~  141 (185)
T 1iam_A           72 GQSTAKTFLTVYWTP-----ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-----AVGEPAE  141 (185)
T ss_dssp             CEEEEECEEEEEBCC-----SEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-----CCTTTEE
T ss_pred             CceEEEEEEEEeCCC-----CCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc-----CCCcccc
Confidence            567778888888643     22333334445789999999999987 4543  589999998875421     1112233


Q ss_pred             EEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        163 CVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       163 ~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      .+|.+...+.+|...|+|+|.+..+
T Consensus       142 ~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          142 VTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             EEEEEeceeccCCCeEEEEEEecCc
Confidence            4677776666666699999998765

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.59  E-value=2.1e-15  Score=116.27  Aligned_cols=97  Identities=26%  Similarity=0.457  Sum_probs=72.9

Q ss_pred             CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      .+..+|.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+++|..+.....+..  ......|.|.+++.+|+|.|+|.|
T Consensus         6 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a   83 (108)
T 3kvq_A            6 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLYTCQA   83 (108)
T ss_dssp             -----CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEE--ETTTTEEEECSCCGGGCEEEEEEE
T ss_pred             CccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEE--eCCCcEEEEeecCcccCEEEEEEE
Confidence            355789999999999999999999999999999999999999998876666543  334468999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEecc
Q psy16852         82 TNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~~  100 (579)
                      .|..|.....+.|.|...+
T Consensus        84 ~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           84 CSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             C----CEEEEEEEEEEC--
T ss_pred             EeCCCceEEEEEEEEeCCC
Confidence            9999999988999887653

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.59  E-value=1.6e-14  Score=127.84  Aligned_cols=174  Identities=13%  Similarity=0.177  Sum_probs=108.0

Q ss_pred             ccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee---c-----------CCCCEEEEEe--CCEEEEEEcC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL---H-----------ATEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~---~-----------~~~~~~~~~~--~~~~~L~i~~   68 (579)
                      .|..+.+.+|++|+|.|.+.+.  +...+.|||..  .   .+   .           ...++.+...  ....+|+|.+
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (226)
T 3mlr_H            6 ESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTT   85 (226)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESS
T ss_pred             cCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECC
Confidence            4557999999999999999753  24579999832  1   11   0           1134544433  2567899999


Q ss_pred             CCCCCCEEEEEEEEcCCe-------ee--EEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-c-CCeE
Q psy16852         69 PTKEDIGVYTCKATNIGG-------VA--TCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-TPSI  137 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~~g-------~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i  137 (579)
                      ++.+|+|.|+|.+.+..+       ..  ...+.+.|...+  ..+|.+........+.+|+.++|.|.+.+. | .+.+
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~--~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v  163 (226)
T 3mlr_H           86 LQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  163 (226)
T ss_dssp             CCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC--CBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEE
T ss_pred             CCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC--CCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEE
Confidence            999999999999976421       01  122355554321  233444322222334579999999999775 4 3689


Q ss_pred             EEEECCEEccCCCC-ceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEE
Q psy16852        138 CWYRGKEEILPDNG-HTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAEC  191 (579)
Q Consensus       138 ~W~~~~~~~~~~~~-~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (579)
                      .|  ++..+..... ...... .++    .+.|.|.....+| |.|+|.+.|..+....
T Consensus       164 ~W--~~~~~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~  218 (226)
T 3mlr_H          164 SW--NSGALTSGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  218 (226)
T ss_dssp             EE--GGGTCCTTEEECCCEEC-TTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEE
T ss_pred             EE--CCccccCCeEeCCcEEC-CCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCe
Confidence            99  3332221100 000011 111    2478899998889 9999999998765443

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.58  E-value=3.6e-15  Score=114.92  Aligned_cols=91  Identities=24%  Similarity=0.471  Sum_probs=69.0

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      +|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....++.+.                             
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~-----------------------------   60 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK-----------------------------   60 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEE-----------------------------
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEe-----------------------------
Confidence            788887888889999999999999999999999999999887655443321                             


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEee
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLP  534 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  534 (579)
                              ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus        61 --------~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           61 --------DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG  100 (108)
T ss_dssp             --------TTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC
T ss_pred             --------CCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeC
Confidence                    1234599999999999999999999999999999999873

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.58  E-value=2.9e-15  Score=114.49  Aligned_cols=94  Identities=18%  Similarity=0.312  Sum_probs=79.6

Q ss_pred             CCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       405 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+..                          
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~--------------------------   65 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT--------------------------   65 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEE--------------------------
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE--------------------------
Confidence            357888888888999999999999999999999999999998887665554432                          


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                               ....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus        66 ---------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           66 ---------TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             ---------CSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEEC
T ss_pred             ---------CCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEEE
Confidence                     2334569999999999999999999999999999999874

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.58  E-value=6.9e-15  Score=131.45  Aligned_cols=176  Identities=14%  Similarity=0.187  Sum_probs=110.1

Q ss_pred             CceEEccCCcEEEEEEEEeec----CCeEEEEECCE-----Ec---c------C----------CCCceEEEcCCCCeEE
Q psy16852        113 KPVIAEAQSPATLKATVTGRP----TPSICWYRGKE-----EI---L------P----------DNGHTMEFNPTTGECV  164 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~-----~~---~------~----------~~~~~~~~~~~~~~~~  164 (579)
                      ..+.+.+|++++|.|.+.+.+    ...+.||+...     .+   .      .          ..++.+..+...+..+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   87 (239)
T 3tv3_H            8 GPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVF   87 (239)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEE
T ss_pred             CCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEE
Confidence            456788999999999998655    34899998421     11   0      0          1223333333456688


Q ss_pred             EEECcCCCCCCeEEEEEEEcCCc-----------ee--EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEE
Q psy16852        165 LSISEATPQDEAVYSVKAVNTFG-----------RA--ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTL  231 (579)
Q Consensus       165 l~i~~~~~~d~G~Y~C~~~~~~~-----------~~--~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l  231 (579)
                      |.|.+++.+|+|.|.|.+.+..+           ..  .....+.+..       ....+|.+........+..|+.++|
T Consensus        88 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~-------~~~~~P~v~~~~~~~~~~~g~~v~l  160 (239)
T 3tv3_H           88 LKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSS-------ASTKGPSVFPLAPSSKSTSGGTAAL  160 (239)
T ss_dssp             EEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECC-------CCCBCCEEEEECCCCCC--TTEEEE
T ss_pred             EEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeecc-------CCCcCCEEEEECCChhhccCCcEEE
Confidence            99999999999999999976421           00  1112333321       1123455553333334557999999


Q ss_pred             EEEEEc-cCCC-eEEEEECCEEeccCc---e----EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852        232 EAEYTG-TPTP-EVKWFKNGKEIVSKD---I----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV  296 (579)
Q Consensus       232 ~C~~~~-~p~~-~v~W~~~~~~i~~~~---~----~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~  296 (579)
                      .|.+.+ .|.+ .+.|++++..+....   .    ......+.|.|......| |.|+|.|.|..+.......+
T Consensus       161 ~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l  233 (239)
T 3tv3_H          161 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV  233 (239)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEe
Confidence            999988 5544 689999886332111   0    111123578899888888 99999999988665544433

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=7.5e-15  Score=111.00  Aligned_cols=89  Identities=28%  Similarity=0.458  Sum_probs=74.0

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.......                              
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~------------------------------   59 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC------------------------------   59 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE------------------------------
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe------------------------------
Confidence            36777777788889999999999999999999999999998775432211                              


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                              ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        60 --------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           60 --------EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             --------ETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEEE
T ss_pred             --------eCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEE
Confidence                    123456999999999999999999999999988888876

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2.4e-14  Score=112.13  Aligned_cols=91  Identities=16%  Similarity=0.302  Sum_probs=74.0

Q ss_pred             CCeeec---CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        407 APKFTK---PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       407 ~p~~~~---~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      +|.+..   ......+.+|+.+.|.|.+.|.|.|.+.|++++..+. ..++.+.                          
T Consensus        21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~--------------------------   73 (118)
T 2e7c_A           21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVR--------------------------   73 (118)
T ss_dssp             EEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEE--------------------------
T ss_pred             CCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEE--------------------------
Confidence            566654   2456789999999999999999999999999999885 3333322                          


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                               .....+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus        74 ---------~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  114 (118)
T 2e7c_A           74 ---------TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV  114 (118)
T ss_dssp             ---------ECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEE
T ss_pred             ---------ECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEE
Confidence                     23345569999999999999999999999999999999875

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.58  E-value=2.8e-14  Score=109.53  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=74.2

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCC---CeeEEEECCEEecC---CCCEEEEE--eC----CEEEEEEcCCCCCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQKDGTELHA---TEHYLITT--VE----SVSTLEIINPTKED   73 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~---~~v~W~~~g~~~~~---~~~~~~~~--~~----~~~~L~i~~~~~~d   73 (579)
                      .|.|+..|.++.+.+|++++|.|.+.|.|.   +.|.|||++.....   ..++.+..  ..    ....|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            588999999999999999999999999887   89999998732211   23444321  11    25789999999999


Q ss_pred             CEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         74 IGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        74 ~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      +|.|+|.|.|..|.....+.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999988888885

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.57  E-value=1.6e-14  Score=109.54  Aligned_cols=91  Identities=22%  Similarity=0.424  Sum_probs=76.8

Q ss_pred             CcCCCCccccccCc-eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852          2 AEVLAPRFIEKIQP-VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus         2 ~~~~~p~~~~~p~~-~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      ....+|.|+..+.+ +.+.+|++++|.|.+ +.|.+.+.|+|+|..+..+ .++.+...+....|.|.+++.+|+|.|+|
T Consensus        11 ~~~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (104)
T 1pd6_A           11 DEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC   89 (104)
T ss_dssp             CCSTTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEE
T ss_pred             CccCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEE
Confidence            45678999998887 899999999999999 6788899999999999877 67777777778899999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEE
Q psy16852         80 KATNIGGVATCSANLIVL   97 (579)
Q Consensus        80 ~~~~~~g~~~~~~~~~v~   97 (579)
                      .+.+    ...++.+.|.
T Consensus        90 ~a~~----~~~~~~l~V~  103 (104)
T 1pd6_A           90 VVGG----EKCSTELFVK  103 (104)
T ss_dssp             EETT----EEECCEEEEE
T ss_pred             EECC----CcEEEEEEEe
Confidence            9933    4455566653

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=9.2e-15  Score=111.60  Aligned_cols=92  Identities=18%  Similarity=0.361  Sum_probs=79.1

Q ss_pred             CCCCccccccCc---eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          4 VLAPRFIEKIQP---VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         4 ~~~p~~~~~p~~---~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      ..||.++..|..   +.+.+|+.++|.|.+.+.+.+ +.|||+|..+....++.+...+....|.|.+++.+|+|.|+|.
T Consensus         5 ~~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   83 (104)
T 2e6p_A            5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECR   83 (104)
T ss_dssp             CSSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEE
T ss_pred             CCCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEE
Confidence            357888888888   899999999999999988888 9999999999888888887777889999999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEecc
Q psy16852         81 ATNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        81 ~~~~~g~~~~~~~~~v~~~~  100 (579)
                      +.|..+    .+.|.|.+++
T Consensus        84 a~n~~~----~~~l~V~~~P   99 (104)
T 2e6p_A           84 TEGVSA----FFGVTVQDPS   99 (104)
T ss_dssp             CSSCCC----CEEEEEECCC
T ss_pred             ECCceE----EEEEEEcCCC
Confidence            988633    5667776553

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.57  E-value=6.8e-14  Score=124.57  Aligned_cols=196  Identities=15%  Similarity=0.212  Sum_probs=115.1

Q ss_pred             EEeccceeeeeeeeeeccc--cCce--eeeecCeeEEEeeeCCCeE-EEEECCE---E---ccCCCeEEEEEC-CCCeEE
Q psy16852        298 ITVAEAETVMMDVRVESHP--TASF--QWFIHSEPVVVTGKPTPLV-TWSHDGT---P---MKEGKEVTIYQD-TDGLCK  365 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~~--~~~~--~~~~~~~~~~~~g~p~~~i-~W~~~~~---~---~~~~~~~~~~~~-~~~~~~  365 (579)
                      +.+..|+.+.|.|......  ...+  .|+...     .+.....+ .+...+.   .   -....++....+ ..+.+.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   84 (232)
T 3qhz_H           10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQP-----PGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVV   84 (232)
T ss_dssp             SEECTTSCEEEEEEEESCGGGCTTCEEEEEEEC-----TTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEE
T ss_pred             EEECCCCcEEEEEEEeCcccccceeEeEEEEEC-----CCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEE
Confidence            4477899999999876432  2334  665421     11111111 1211211   1   111245555443 356788


Q ss_pred             EEEcccCCCCCEEEEEEEEcCc--------eeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCC
Q psy16852        366 LAISEVFPENAGLYSCTAVNPV--------GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTP  437 (579)
Q Consensus       366 l~i~~~~~~d~G~Y~C~a~n~~--------g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~  437 (579)
                      |.|.+++.+|+|.|.|.+.+..        ........|.|..  ....+|.+........+..|+.++|.|.+.+.+++
T Consensus        85 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~--~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~  162 (232)
T 3qhz_H           85 LTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSS--ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (232)
T ss_dssp             EEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECS--SCCBCCEEEEECC-------CEEEEEEEEEEEBSS
T ss_pred             EEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEec--CCCCCCEEEEecccccccCCCcEEEEEEEeeEeCC
Confidence            9999999999999999999763        1222334566653  22245666533333345679999999999986543


Q ss_pred             --eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEE
Q psy16852        438 --SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTC  515 (579)
Q Consensus       438 --~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  515 (579)
                        .+.|++++..+....                 ........|.|...              +.|+|.....+| |.|+|
T Consensus       163 ~~~v~W~~~g~~~~~~~-----------------~~~~~~~~g~~~~~--------------s~L~i~~~~~~~-g~ytC  210 (232)
T 3qhz_H          163 PVTVSWNSGALTSGVHT-----------------FPAVLQSSGLYSLS--------------SVVTVPSSSLGT-QTYIC  210 (232)
T ss_dssp             CCEEEEGGGTBCTTEEE-----------------CCCEECTTSCEEEE--------------EEEEEEGGGGGT-CCCEE
T ss_pred             CeEEEEEECCEecceee-----------------ccceeCCCCCEEEE--------------EEEEEchhhcCC-CEEEE
Confidence              688999885431100                 00011223444332              449999999999 99999


Q ss_pred             EEEeCCeeEEEEEEEEE
Q psy16852        516 RAENVAGSVTCTATLSL  532 (579)
Q Consensus       516 ~a~n~~g~~~~~~~l~v  532 (579)
                      .|.|..+.......|.+
T Consensus       211 ~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          211 NVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             EEEEGGGTEEEEEECCC
T ss_pred             EEEeCCCCccEEEEeCC
Confidence            99999988877777664

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=9.9e-15  Score=112.84  Aligned_cols=94  Identities=24%  Similarity=0.421  Sum_probs=78.9

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....+..+..                           
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~---------------------------   60 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV---------------------------   60 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEE---------------------------
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEE---------------------------
Confidence            58888888888999999999999999999999999999998886655433321                           


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                             .....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        61 -------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  101 (110)
T 2dm3_A           61 -------RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA  101 (110)
T ss_dssp             -------CTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEE
T ss_pred             -------ecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEe
Confidence                   11224569999999999999999999999999999999986

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=9.2e-15  Score=110.75  Aligned_cols=92  Identities=23%  Similarity=0.352  Sum_probs=76.0

Q ss_pred             CCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEE
Q psy16852        404 SGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSV  482 (579)
Q Consensus       404 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c  482 (579)
                      ...+|.+...+....+..|+.++|.|.+.|.|.|.+.|++++..+.... ++.+                          
T Consensus         5 ~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~--------------------------   58 (100)
T 2edj_A            5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI--------------------------   58 (100)
T ss_dssp             CCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE--------------------------
T ss_pred             CCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE--------------------------
Confidence            3458888888888899999999999999999999999999998875322 2211                          


Q ss_pred             EeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       483 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                  ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        59 ------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (100)
T 2edj_A           59 ------------QEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT   97 (100)
T ss_dssp             ------------CTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEE
T ss_pred             ------------cCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEe
Confidence                        012249999999999999999999999999999999875

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.57  E-value=2e-14  Score=107.42  Aligned_cols=87  Identities=24%  Similarity=0.401  Sum_probs=76.3

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      .|.|...|.++.+.+|++++|.|.+ +.|.+.+.|||+|..+..+.++.+...+....|.|.+++.+|+|.|+|.+    
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----   82 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----   82 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----
Confidence            4788999999999999999999999 77888999999999998888888887777889999999999999999999    


Q ss_pred             eeeEEEEEEEEE
Q psy16852         86 GVATCSANLIVL   97 (579)
Q Consensus        86 g~~~~~~~~~v~   97 (579)
                      |....++.|.|.
T Consensus        83 g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 GSSKVKFDLKVI   94 (95)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCceEEEEEEEe
Confidence            445556677664

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.57  E-value=1.5e-14  Score=128.42  Aligned_cols=177  Identities=18%  Similarity=0.179  Sum_probs=108.7

Q ss_pred             cCCCceEEccCCcEEEEEEEEee--cCCeEEEEECC--E---Ecc-------------CCCCceEEEcCCCCeEEEEECc
Q psy16852        110 KPLKPVIAEAQSPATLKATVTGR--PTPSICWYRGK--E---EIL-------------PDNGHTMEFNPTTGECVLSISE  169 (579)
Q Consensus       110 ~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~---~~~-------------~~~~~~~~~~~~~~~~~l~i~~  169 (579)
                      ..+..+.+.+|++++|.|.+.+.  +...+.||+..  .   .+.             ...++.+..+...+..+|.|.+
T Consensus         6 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (230)
T 1ypz_F            6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (230)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             ccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECc
Confidence            34566788999999999999764  56789999853  1   110             1122333333334678999999


Q ss_pred             CCCCCCeEEEEEEEcC--Cc--eeEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-CeE
Q psy16852        170 ATPQDEAVYSVKAVNT--FG--RAECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-PEV  243 (579)
Q Consensus       170 ~~~~d~G~Y~C~~~~~--~~--~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v  243 (579)
                      ++.+|+|.|.|.+.+.  ..  .......+.|..............|.+.. +....+..|+.++|.|.+.+. |. +.+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~~v  164 (230)
T 1ypz_F           86 LEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVIRV  164 (230)
T ss_dssp             CCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCCEE
T ss_pred             CChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCCeEE
Confidence            9999999999999874  11  11112344443100000000011222222 222334568899999999985 75 599


Q ss_pred             EEEE-CCEEeccCc---eEEe----CCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        244 KWFK-NGKEIVSKD---IETK----DNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       244 ~W~~-~~~~i~~~~---~~~~----~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      .|++ +|..+....   ....    ...+.|.|..... + |.|+|.|.|..+.
T Consensus       165 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          165 YWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             EEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             EEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            9999 887664321   1111    1235688888775 4 9999999998754

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.56  E-value=1.4e-14  Score=109.64  Aligned_cols=90  Identities=22%  Similarity=0.358  Sum_probs=79.3

Q ss_pred             CCCccccccCc-eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          5 LAPRFIEKIQP-VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         5 ~~p~~~~~p~~-~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      -+|.|...+.+ +.+.+|+.++|.|.+. .|.+.+.|||+|..+..+.++.+...+....|.|.+++.+|+|.|+|.|  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            58899988887 7899999999999998 6888999999999998888888888888889999999999999999999  


Q ss_pred             CCeeeEEEEEEEEEec
Q psy16852         84 IGGVATCSANLIVLEK   99 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~   99 (579)
                        |....++.|.|.++
T Consensus        83 --g~~~~~~~l~V~~~   96 (100)
T 2yuv_A           83 --GDEKCSTELFVRSG   96 (100)
T ss_dssp             --TTEEEEEEEEECCS
T ss_pred             --CCceEEEEEEEecC
Confidence              55667778888653

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.56  E-value=4.1e-14  Score=109.05  Aligned_cols=85  Identities=18%  Similarity=0.221  Sum_probs=67.0

Q ss_pred             cCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEE
Q psy16852        421 AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVL  500 (579)
Q Consensus       421 ~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l  500 (579)
                      .+..+.|.|.+.|+|.|+|+|+|+|.+|..+.++.+.+...            ..+                .....+.|
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~------------~~~----------------~~~~~~~L   65 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP------------AAN----------------ETVRHGCL   65 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECC------------CSS----------------CCCEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeec------------ccc----------------ccccceEE
Confidence            56789999999999999999999999998776655432100            000                01123569


Q ss_pred             EEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        501 LISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       501 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      .|.++..+|+|.|+|.|.|.+|....++.|.|.
T Consensus        66 ~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~   98 (126)
T 1he7_A           66 RLNQPTHVNNGNYTLLAANPFGQASASIMAAFM   98 (126)
T ss_dssp             EEESCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             EECcCCCCCCEEEEEEEEECCCeEEEEEEEEEE
Confidence            999999999999999999999999999999865

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=6.4e-15  Score=112.37  Aligned_cols=94  Identities=22%  Similarity=0.296  Sum_probs=75.1

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEee---CCCeeEEEECCE-EecC--CCCEEEEEe-C-----CEEEEEEcCCCCC
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGH---PLPTMTWQKDGT-ELHA--TEHYLITTV-E-----SVSTLEIINPTKE   72 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~---~~~~v~W~~~g~-~~~~--~~~~~~~~~-~-----~~~~L~i~~~~~~   72 (579)
                      .++.|+..|.++.|.+|++++|.|.+.+.   |.|.|.|||+.. .+..  ..++.+... .     ...+|+|.+++.+
T Consensus        11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            46778999999999999999999999874   678999999752 2221  233333221 1     1589999999999


Q ss_pred             CCEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852         73 DIGVYTCKATNIGGVATCSANLIVLE   98 (579)
Q Consensus        73 d~G~Y~C~~~~~~g~~~~~~~~~v~~   98 (579)
                      |+|.|+|+|.|..|..+..+.|.|.+
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            99999999999999998899998864

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.55  E-value=5.9e-14  Score=109.17  Aligned_cols=94  Identities=23%  Similarity=0.388  Sum_probs=78.0

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      .+|.|+..+....+.+|+.++|.|.+.|.|.|.+.|++++..+... .++.+..+                         
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~-------------------------   68 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQD-------------------------   68 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEEC-------------------------
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeC-------------------------
Confidence            4788888888999999999999999999999999999999988643 33333210                         


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                               ....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        69 ---------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  108 (116)
T 2kkq_A           69 ---------NTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT  108 (116)
T ss_dssp             ---------TTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ---------CCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEe
Confidence                     1123469999999999999999999999999999999986

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.55  E-value=8.4e-15  Score=105.56  Aligned_cols=80  Identities=20%  Similarity=0.355  Sum_probs=63.4

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +..+.+.+|+.+.|.|.+.+ |.|.|.|+|+|..|..+.++.+..                                   
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~-----------------------------------   46 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQ-----------------------------------   46 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEE-----------------------------------
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEee-----------------------------------
Confidence            45677899999999999965 999999999999998877766544                                   


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ++..+.|+|.+++.+|+|.|+|.|.|    ...++.|.|.
T Consensus        47 ~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~l~V~   82 (84)
T 2lu7_A           47 AGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFLVSVE   82 (84)
T ss_dssp             CSSCEEEEESSCSSTTCEEEEEECTT----TCEEEEEEEC
T ss_pred             cCCeEEEEecCCCCcccEEEEEEECC----EEEEEEEEEE
Confidence            34455688888888889999999855    4556677764

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=105.74  Aligned_cols=86  Identities=17%  Similarity=0.276  Sum_probs=65.3

Q ss_pred             CCCeeecCCCce--eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        406 EAPKFTKPLKPV--IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       406 ~~p~~~~~~~~~--~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      .||.+..++...  .+.+|+.+.|.|.+.+ |.|.+.|+|+|..|..+.++.+..                         
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~-------------------------   56 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLEN-------------------------   56 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEE-------------------------
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEe-------------------------
Confidence            366666666654  4568999999999965 889999999999998877766543                         


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEE
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS  531 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  531 (579)
                                ++....|.|.++..+|+|.|+|.|.|.    ..++.|+
T Consensus        57 ----------~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~lt   90 (91)
T 2lvc_A           57 ----------EGPHRRLVLPATQPSDGGEFQCVAGDE----CAYFTVT   90 (91)
T ss_dssp             ----------ETTEEEEEESSCCGGGCSEEEEECSSC----EEEEEEE
T ss_pred             ----------cCCeEEEEeCCCChhhcEEEEEEEcce----EEEEEEE
Confidence                      445566888888888899999998664    4455554

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.55  E-value=3.3e-14  Score=107.83  Aligned_cols=93  Identities=20%  Similarity=0.247  Sum_probs=74.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEE--eC---CEEEEEEcCCCCCCCEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT--VE---SVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~--~~---~~~~L~i~~~~~~d~G~Y~   78 (579)
                      .+||++.....   ...|+.+.|.|.+.|.|.|.++|+++|..+..+.......  ..   ..+.|.|.+++.+|+|.|+
T Consensus         2 ~~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   78 (103)
T 1wwb_X            2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             CCCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEE
Confidence            47888754322   3468899999999999999999999999998776543321  11   2456999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEec
Q psy16852         79 CKATNIGGVATCSANLIVLEK   99 (579)
Q Consensus        79 C~~~~~~g~~~~~~~~~v~~~   99 (579)
                      |.|.|..|....++.|.|.+.
T Consensus        79 C~A~N~~G~~~~~~~l~V~~~   99 (103)
T 1wwb_X           79 LIAKNEYGKDEKQISAHFMGW   99 (103)
T ss_dssp             EEEECSSCEEEEEEEECCSCC
T ss_pred             EEEEeCCCcEeEEEEEEECCC
Confidence            999999999999988888754

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.55  E-value=7e-14  Score=105.98  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .||.+.....   ...|+.+.|.|.+.|.|.|+++|+++|..+..+.+..+.+.           .              
T Consensus         3 ~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~-----------~--------------   54 (103)
T 1wwb_X            3 FAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIH-----------V--------------   54 (103)
T ss_dssp             CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEE-----------E--------------
T ss_pred             CCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEE-----------e--------------
Confidence            3566542222   34578899999999999999999999999876654322210           0              


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                           .......+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus        55 -----~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   97 (103)
T 1wwb_X           55 -----TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM   97 (103)
T ss_dssp             -----ECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCS
T ss_pred             -----cCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEC
Confidence                 0001124569999999999999999999999999999999865

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.55  E-value=6.7e-15  Score=111.54  Aligned_cols=92  Identities=25%  Similarity=0.377  Sum_probs=74.4

Q ss_pred             CCCcccccc----CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEE-EEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852          5 LAPRFIEKI----QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL-ITTVESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus         5 ~~p~~~~~p----~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      .||.|...|    ..+.+.+|+.++|.|.+.|.|.+.+.|+++|..+....... .........|.|.+++.+|+|.|+|
T Consensus         3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   82 (100)
T 3caf_A            3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   82 (100)
T ss_dssp             EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEE
Confidence            477787655    46889999999999999999999999999999886543211 1222334589999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEE
Q psy16852         80 KATNIGGVATCSANLIV   96 (579)
Q Consensus        80 ~~~~~~g~~~~~~~~~v   96 (579)
                      .|.|..|.....+.|.|
T Consensus        83 ~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           83 VVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEEEE
Confidence            99999998888777776

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.55  E-value=1.4e-14  Score=129.80  Aligned_cols=177  Identities=11%  Similarity=0.098  Sum_probs=108.3

Q ss_pred             CCceEEccCCcEEEEEEEEe--ecCCeEEEEECC--E---Ec---c-----------CCCCceEEEcCCCCeEEEEECcC
Q psy16852        112 LKPVIAEAQSPATLKATVTG--RPTPSICWYRGK--E---EI---L-----------PDNGHTMEFNPTTGECVLSISEA  170 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~--~p~~~i~W~~~~--~---~~---~-----------~~~~~~~~~~~~~~~~~l~i~~~  170 (579)
                      +.++.+.+|++++|.|.+.+  .+...+.||+..  .   .+   .           ...++.+..+...+..+|.|.++
T Consensus         6 ~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   85 (248)
T 3u2s_H            6 SGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSL   85 (248)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            35677889999999999975  234789999842  1   11   0           01233344444456788999999


Q ss_pred             CCCCCeEEEEEEEcCCc--------------------e--eEEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCe
Q psy16852        171 TPQDEAVYSVKAVNTFG--------------------R--AECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDST  228 (579)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~--------------------~--~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  228 (579)
                      +.+|+|.|.|.+.+..+                    .  ......+.|..       ....+|.+........+..|+.
T Consensus        86 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~-------~~~~~P~v~~~~~~~~~~~g~~  158 (248)
T 3u2s_H           86 RVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSS-------ASTKGPSVFPLAPSSKSTSGGT  158 (248)
T ss_dssp             CGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECS-------CCCBCCEEEEECCC------CE
T ss_pred             CHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcc-------cCCCCCEEEEeCCCccccCCCc
Confidence            99999999999986310                    0  11112333321       1123455543333334556999


Q ss_pred             EEEEEEEEc-cC-CCeEEEEECCEEeccCc---e----EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEEEEE
Q psy16852        229 VTLEAEYTG-TP-TPEVKWFKNGKEIVSKD---I----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV  296 (579)
Q Consensus       229 ~~l~C~~~~-~p-~~~v~W~~~~~~i~~~~---~----~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~~~~  296 (579)
                      ++|.|.+.+ .| ...+.|++++..+....   .    ......+.|.|......| |.|+|.|.|..+.......+
T Consensus       159 ~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l  234 (248)
T 3u2s_H          159 AALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  234 (248)
T ss_dssp             EEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEE
Confidence            999999987 45 34899999885321110   0    111223578888888888 99999999987665544433

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=2.8e-15  Score=113.69  Aligned_cols=90  Identities=20%  Similarity=0.293  Sum_probs=76.8

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC----CEEEEEeCCEEEEEEcCCCCCCCEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE----HYLITTVESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      -.||.|...|.++.+.+|+.++|.|.+.+.+ +.+.|||+|..+....    ++.+...+....|.|.+++.+|+|.|+|
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   84 (101)
T 2edk_A            6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQV   84 (101)
T ss_dssp             CCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEE
T ss_pred             cCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEE
Confidence            4678999999999999999999999998888 8999999999987765    5677777777899999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEEe
Q psy16852         80 KATNIGGVATCSANLIVLE   98 (579)
Q Consensus        80 ~~~~~~g~~~~~~~~~v~~   98 (579)
                      .|.|    ....+.+.|.+
T Consensus        85 ~a~n----~~~~~~l~V~~   99 (101)
T 2edk_A           85 ITNG----GQCEAELIVEE   99 (101)
T ss_dssp             ECSS----CEECCBEEEEC
T ss_pred             EEcC----CcEEEEEEEeC
Confidence            9976    34455666654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.55  E-value=8.6e-15  Score=112.13  Aligned_cols=92  Identities=24%  Similarity=0.356  Sum_probs=79.9

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +-.||.|...|.++.+.+|++++|.|.+.+.+.+ +.|||+|..+....++.+...+....|.|.+++.+|+|.|+|.|.
T Consensus         5 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (106)
T 2dlt_A            5 SSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPD   83 (106)
T ss_dssp             SCCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEE
T ss_pred             CCCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEc
Confidence            4568999999999999999999999999988876 999999999988888888777778899999999999999999999


Q ss_pred             cCCeeeEEEEEEEEE
Q psy16852         83 NIGGVATCSANLIVL   97 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~   97 (579)
                      |.  .....+.+.|.
T Consensus        84 n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           84 GY--ALSLSAKLNFL   96 (106)
T ss_dssp             TS--CCCCCBCEEEE
T ss_pred             cC--CceEEEEEEEE
Confidence            87  33445566665

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=2.9e-14  Score=110.04  Aligned_cols=112  Identities=15%  Similarity=0.197  Sum_probs=78.1

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEee---CCCeEEEeeCCEE-cC--CCCCeeEEEcCCCCeEEEEEccccCCCceeE
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGR---PTPSICWYRGKEE-IL--PDNGHTMEFNPTTGECVLSISEATPQDEAVY  480 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~~v~W~~~~~~-l~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  480 (579)
                      .|.|...+....+.+|+.++|.|.+.|.   |.|.|.|||++.. +.  ...++.+..           ......     
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~-----------~~~~~~-----   70 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE-----------TFERHS-----   70 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEE-----------EEETTT-----
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEcc-----------cccccc-----
Confidence            4567777888899999999999999874   8999999997421 11  122222210           000000     


Q ss_pred             EEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEeeCCcccccccCCccccCCC
Q psy16852        481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEVTDVMESPRFIKTPE  552 (579)
Q Consensus       481 ~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~v~~~p~~~~~~~  552 (579)
                                   ....+.|.|.++..+|+|.|+|.|.|..|..++++.|.|+..     -...|.+.+.|.
T Consensus        71 -------------~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~~-----~~~~p~~~i~~~  124 (126)
T 2dav_A           71 -------------RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES-----TGTTPNIDSGPS  124 (126)
T ss_dssp             -------------TEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECC-----CCSCCCCCCSCC
T ss_pred             -------------ccceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEec-----CCCCCeEEeccC
Confidence                         012356999999999999999999999999999999999731     134555555553

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=2.8e-14  Score=108.24  Aligned_cols=90  Identities=21%  Similarity=0.255  Sum_probs=75.7

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC----------CEEEEEeCCEEEEEEcCCCCCCC
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE----------HYLITTVESVSTLEIINPTKEDI   74 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~----------~~~~~~~~~~~~L~i~~~~~~d~   74 (579)
                      .+|.|...|.++.+.+|+.++|.|.+.+  .+.+.|+|||..|..+.          ++.+...+..++|.|.+++.+|+
T Consensus         7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~   84 (112)
T 2e6q_A            7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS   84 (112)
T ss_dssp             SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred             CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence            3578999999999999999999999986  66899999999998776          67766666678999999999999


Q ss_pred             EEEEEEEEcCCeeeEEEEEEEEEec
Q psy16852         75 GVYTCKATNIGGVATCSANLIVLEK   99 (579)
Q Consensus        75 G~Y~C~~~~~~g~~~~~~~~~v~~~   99 (579)
                      |.|+|..-+   ....++.|.|...
T Consensus        85 G~Y~~~~~~---~~~ssA~L~V~~~  106 (112)
T 2e6q_A           85 GALVGFSCP---GVQDSAALTIQES  106 (112)
T ss_dssp             SEEEEEEET---TEEEEEEEEEECS
T ss_pred             ccEEEEEEC---CeeEEEEEEEeCC
Confidence            999774433   3456788998764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.54  E-value=7.1e-14  Score=108.47  Aligned_cols=89  Identities=22%  Similarity=0.347  Sum_probs=78.5

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      .||.|...|.+..+.+|++++|.|.+.+.  +.+.|||+|..+..+.++.+...+....|.|.+++.+|+|.|+|.|   
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   92 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC---   92 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE---
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe---
Confidence            56789899999999999999999999764  6899999999998888888888888889999999999999999999   


Q ss_pred             CeeeEEEEEEEEEec
Q psy16852         85 GGVATCSANLIVLEK   99 (579)
Q Consensus        85 ~g~~~~~~~~~v~~~   99 (579)
                       +.....+.|.|...
T Consensus        93 -~~~~~~~~l~V~~~  106 (113)
T 2edh_A           93 -GKERTSAMLTVRAM  106 (113)
T ss_dssp             -TTEEEEEEEEECCC
T ss_pred             -CCCCEEEEEEEeCC
Confidence             55677788888654

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.54  E-value=5.4e-14  Score=134.64  Aligned_cols=165  Identities=12%  Similarity=0.086  Sum_probs=110.1

Q ss_pred             EccCCcEEEEEEEEee---cC-CeEEEEECCEEccCCCCce---EEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCcee
Q psy16852        117 AEAQSPATLKATVTGR---PT-PSICWYRGKEEILPDNGHT---MEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRA  189 (579)
Q Consensus       117 ~~~g~~~~l~C~~~~~---p~-~~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  189 (579)
                      +.+|+.++|.|.+.+.   |. ..|.||+++..+.......   ...........|.|..++.+|+|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            6789999999999887   32 4799999987654221110   110111123579999999999999999999886643


Q ss_pred             EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-C-CCeEEEEECCEEeccCce---E-----E
Q psy16852        190 ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-P-TPEVKWFKNGKEIVSKDI---E-----T  259 (579)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~i~~~~~---~-----~  259 (579)
                      .....+.+.       ..+..+|.+...+.......|+.++|.|.+.+. | ...|+|++||..+.....   .     .
T Consensus       260 ~~~~~v~~~-------~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt  332 (376)
T 2aty_A          260 PIEKTISKT-------KGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNES  332 (376)
T ss_pred             ceEEEEcCC-------CCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCC
Confidence            332222211       012346666555554445568999999999985 4 448999999988743221   0     1


Q ss_pred             eCCeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852        260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAG  288 (579)
Q Consensus       260 ~~~~~~l~i~~~~~~d~G~y~C~a~n~~g  288 (579)
                      ....+.|.|.....+|.|.|+|+|.|...
T Consensus       333 y~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          333 YFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            11235677777777889999999998764

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.54  E-value=3.4e-13  Score=119.76  Aligned_cols=197  Identities=13%  Similarity=0.168  Sum_probs=118.6

Q ss_pred             EEeccceeeeeeeeeec--cccCceeeeecCeeEEEeee-CCCeEEEEECCE----EccCCCeEEEEEC-CCCeEEEEEc
Q psy16852        298 ITVAEAETVMMDVRVES--HPTASFQWFIHSEPVVVTGK-PTPLVTWSHDGT----PMKEGKEVTIYQD-TDGLCKLAIS  369 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~g~-p~~~i~W~~~~~----~~~~~~~~~~~~~-~~~~~~l~i~  369 (579)
                      +.+.+|..+.|.|....  .....+.|+...     .+. +...+.+..++.    .-....++.+..+ ..+.+.|.|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~-----~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (230)
T 3n9g_H           10 EVRKPGASTKVSCKASGYTFTHYYMHWVRQA-----PGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELS   84 (230)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEC-----TTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEcCCCCEEEEEEeecceecCcEEEEEEEC-----CCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            55788999999998764  233456665321     000 000111111110    0112245555443 3467789999


Q ss_pred             ccCCCCCEEEEEEEEcCc-----e---eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCC--CeE
Q psy16852        370 EVFPENAGLYSCTAVNPV-----G---EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPT--PSI  439 (579)
Q Consensus       370 ~~~~~d~G~Y~C~a~n~~-----g---~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v  439 (579)
                      +++.+|+|.|.|.+.+..     +   .......|.|..  ....+|.+........+..|+.++|.|.+.+.++  +.+
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~--~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v  162 (230)
T 3n9g_H           85 SLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSS--ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  162 (230)
T ss_dssp             SCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECS--SCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEE
T ss_pred             CCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEe--cCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEE
Confidence            999999999999998754     1   112334566653  2224566653333334568999999999998543  378


Q ss_pred             EEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        440 CWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       440 ~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .|  ++..+....               .-........|.|...              +.|+|.....+| |.|+|.|.|
T Consensus       163 ~W--~~~~~~~~~---------------~~~~~~~~~~g~~~~~--------------s~L~i~~~~~~~-~~ytC~v~h  210 (230)
T 3n9g_H          163 SW--NSGALTSGV---------------HTFPAVLQSSGLYSLS--------------SVVTVPSSSLGT-QTYICNVNH  210 (230)
T ss_dssp             EE--GGGTBCTTE---------------EECCCEECTTSCEEEE--------------EEEEEESTTBTT-BCCEEEEEE
T ss_pred             EE--CCcccCCCe---------------EeCCceECCCCCEEEE--------------EEEEECHHHcCC-CeEEEEEEE
Confidence            99  554442210               0001112233555433              459999999999 999999999


Q ss_pred             CCeeEEEEEEEEEe
Q psy16852        520 VAGSVTCTATLSLL  533 (579)
Q Consensus       520 ~~g~~~~~~~l~v~  533 (579)
                      ..+.......+.|.
T Consensus       211 ~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          211 KPSNTKVDKRVEPK  224 (230)
T ss_dssp             GGGTEEEEEECCCC
T ss_pred             CCCCcceEEEccCC
Confidence            99888777777653

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=5.2e-14  Score=108.65  Aligned_cols=95  Identities=28%  Similarity=0.442  Sum_probs=77.6

Q ss_pred             CCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       405 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      ..+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.. ..++.+..+                        
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~------------------------   61 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD------------------------   61 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEEC------------------------
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEEC------------------------
Confidence            3588888888888999999999999999999999999999988865 333333220                        


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                ....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        62 ----------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  101 (110)
T 2dm2_A           62 ----------LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ  101 (110)
T ss_dssp             ----------TTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEE
T ss_pred             ----------CCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEE
Confidence                      0122458999999999999999999999999999999986

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.53  E-value=3.9e-14  Score=108.95  Aligned_cols=91  Identities=20%  Similarity=0.348  Sum_probs=78.6

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .-.||.|...|.++.+.+|+.++|.|.+.+.  +.+.|+|++..+..+.++.+...+....|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   82 (108)
T 2dm7_A            5 SSGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG   82 (108)
T ss_dssp             SCCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEET
T ss_pred             cCCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEc
Confidence            3578999999999999999999999999764  68999999999988888888877788899999999999999999994


Q ss_pred             cCCeeeEEEEEEEEEec
Q psy16852         83 NIGGVATCSANLIVLEK   99 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~   99 (579)
                      |    ....+.+.|...
T Consensus        83 n----~~~~~~l~V~~~   95 (108)
T 2dm7_A           83 Q----ERTSATLTVRAL   95 (108)
T ss_dssp             T----EEEEEECEEECC
T ss_pred             C----CEEEEEEEEecC
Confidence            3    466677777753

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=5.8e-14  Score=106.92  Aligned_cols=93  Identities=31%  Similarity=0.423  Sum_probs=81.4

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .-.||.|...|.++.+.+|+.++|.|.+ +.|.+.+.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.  
T Consensus         5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--   81 (103)
T 2dku_A            5 SSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD--   81 (103)
T ss_dssp             SCCCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE--
T ss_pred             CCCCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE--
Confidence            3468999999999999999999999995 7788899999999999888888887777788999999999999999998  


Q ss_pred             cCCeeeEEEEEEEEEecc
Q psy16852         83 NIGGVATCSANLIVLEKE  100 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~  100 (579)
                        .|.....+.|.|...+
T Consensus        82 --~g~~~~~~~l~V~~~p   97 (103)
T 2dku_A           82 --IGQAQSRAQLLVQGRR   97 (103)
T ss_dssp             --CSSCBCCEEEEEECSC
T ss_pred             --eCCceEEEEEEEeCcc
Confidence              4666667888887654

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.53  E-value=4.2e-14  Score=104.77  Aligned_cols=83  Identities=16%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      ++.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+|+|..+.....         ..|.|.+++.+|+|.|+|.+.|..
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~   73 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDR   73 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSS
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------CeEEECCCCHHhCEEEEEEEEcCC
Confidence            57788899999999999999999999999999999999998875532         579999999999999999999998


Q ss_pred             eeeE-EEEEEEEE
Q psy16852         86 GVAT-CSANLIVL   97 (579)
Q Consensus        86 g~~~-~~~~~~v~   97 (579)
                      |... ..+.+.|.
T Consensus        74 g~~~s~~~~l~V~   86 (91)
T 3bfo_A           74 DSQDSKKVEIIID   86 (91)
T ss_dssp             CEEECCCEEEEEC
T ss_pred             CCEEeeeEEEEEe
Confidence            8654 34566663

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.53  E-value=2.7e-14  Score=108.77  Aligned_cols=91  Identities=23%  Similarity=0.341  Sum_probs=80.0

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      -.||.|...|.++.+.+|++++|.|.+.+.|.+ +.|++++..+..+.++.+...+....|.|.+++.+|+|.|+|.   
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2e7b_A            6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS---   81 (103)
T ss_dssp             CCCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE---
T ss_pred             CCCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE---
Confidence            468999999999999999999999999998888 9999999999878888888777788999999999999999998   


Q ss_pred             CCeeeEEEEEEEEEec
Q psy16852         84 IGGVATCSANLIVLEK   99 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~   99 (579)
                       .|.....+.|.|...
T Consensus        82 -~g~~~~~~~l~V~~~   96 (103)
T 2e7b_A           82 -FGDQTTSATLTVTAL   96 (103)
T ss_dssp             -CSSCBCCBCEEEECC
T ss_pred             -ECCcEEEEEEEEEec
Confidence             355666677777654

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.53  E-value=8.7e-14  Score=122.54  Aligned_cols=167  Identities=14%  Similarity=0.226  Sum_probs=105.8

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Eec---------CCCCEEEEEe--CCEEEEEEcCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---ELH---------ATEHYLITTV--ESVSTLEIINPT   70 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~~---------~~~~~~~~~~--~~~~~L~i~~~~   70 (579)
                      +...|..+.+.+|++++|.|.+.+.+  ...+.|||..  .   .+.         ...++.....  .....|+|.+++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   83 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence            55678889999999999999997543  3579999842  1   121         1356665543  457899999999


Q ss_pred             CCCCEEEEEEEEcCC------ee--eEEEEEEEEEecccCCCCCceecCCCceEEccCCcEEEEEEEEee-cC-CeEEEE
Q psy16852         71 KEDIGVYTCKATNIG------GV--ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-PT-PSICWY  140 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~~------g~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~  140 (579)
                      .+|+|.|+|.+.+..      +.  ....+.|.|........+|.+.       +.. ..++|.|.+.++ |. ..|.|+
T Consensus        84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~-------~~~-~~~~L~C~~~g~~P~~i~v~W~  155 (229)
T 1hxm_A           84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVF-------VMK-NGTNVACLVKEFYPKDIRINLV  155 (229)
T ss_dssp             GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEE-------EEE-ETTEEEEEEESCBSSCCEEEEE
T ss_pred             HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEE-------EcC-CCCeEEEEEEEEeCCCEEEEEe
Confidence            999999999998753      11  1123567776422111222222       111 224999999875 44 399999


Q ss_pred             ECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        141 RGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      ++ ..+..... .... ..++...+. .....++.|.|+|.+.|..+
T Consensus       156 ~~-~~~~~~~~-~~~~-~~dg~y~~~-~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          156 SS-KKITEFDP-AIVI-SPSGKYNAV-KLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             CS-SEEEECCC-EEEE-CTTSSEEEE-EEEEETTTTTCEEEEEETTE
T ss_pred             cC-CEEecCcc-ceEE-CCCCcEEEE-ECcccCCCCcEEEEEEeCCC
Confidence            99 66543322 1222 223333333 22233688999999998764

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.52  E-value=4.7e-14  Score=106.83  Aligned_cols=92  Identities=21%  Similarity=0.373  Sum_probs=71.4

Q ss_pred             CCeeecCC----CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEE
Q psy16852        407 APKFTKPL----KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV  482 (579)
Q Consensus       407 ~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c  482 (579)
                      +|.+...+    ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+...                          
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~--------------------------   57 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG--------------------------   57 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTC--------------------------
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEccccccccc--------------------------
Confidence            55555433    346788999999999999999999999999988865432110                          


Q ss_pred             EeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       483 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                              .......+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        58 --------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           58 --------YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             --------CEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             --------EEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEE
Confidence                    011123356999999999999999999999999998888876

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.51  E-value=2.5e-13  Score=104.20  Aligned_cols=98  Identities=15%  Similarity=0.150  Sum_probs=71.7

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCC---CeEEEeeCCEEcCC---CCCeeEEEcCCCCeEEEEEccccCCCceeE
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPT---PSICWYRGKEEILP---DNGHTMEFNPTTGECVLSISEATPQDEAVY  480 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~---~~v~W~~~~~~l~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  480 (579)
                      .|.|...+....+.+|+.++|.|.+.|.|.   |.|.|+|++.....   ..++.+..             .....    
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~-------------~~~~~----   66 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD-------------SYDRA----   66 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEE-------------EEETT----
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEee-------------EEecc----
Confidence            577777788889999999999999999998   99999997622111   11111100             00000    


Q ss_pred             EEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       481 ~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                  .....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        67 ------------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           67 ------------SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             ------------TTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ------------cccceEEEEEecCCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence                        01124569999999999999999999999999999999875

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=2.1e-13  Score=105.82  Aligned_cols=90  Identities=23%  Similarity=0.401  Sum_probs=75.7

Q ss_pred             CCCccccccCc---eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          5 LAPRFIEKIQP---VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         5 ~~p~~~~~p~~---~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      -||.++..|..   +.+.+|+.+.|.|.+. .|.+.+.|||+|..+..+.++.+...+....|.|.+++.+|+|.|+|.+
T Consensus         9 ~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   87 (113)
T 2cpc_A            9 DVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI   87 (113)
T ss_dssp             SCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEES
T ss_pred             cCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEE
Confidence            36667676766   7889999999999995 7778999999999998877877777677789999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEec
Q psy16852         82 TNIGGVATCSANLIVLEK   99 (579)
Q Consensus        82 ~~~~g~~~~~~~~~v~~~   99 (579)
                      .|    ....+.|.|..+
T Consensus        88 ~n----~~~~~~l~V~~~  101 (113)
T 2cpc_A           88 DD----ESASFTVTVTEP  101 (113)
T ss_dssp             SS----CEEEEEEEEECC
T ss_pred             ec----CcEEEEEEEecC
Confidence            87    455677888754

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.50  E-value=2e-15  Score=132.56  Aligned_cols=170  Identities=15%  Similarity=0.097  Sum_probs=105.9

Q ss_pred             ecCCCceEEccCCcEEEEEEEEeecC---CeEEEEECCEEccCCCCce-E-EEc-CCCCeEEEEECcCCCCCCeEEEEEE
Q psy16852        109 TKPLKPVIAEAQSPATLKATVTGRPT---PSICWYRGKEEILPDNGHT-M-EFN-PTTGECVLSISEATPQDEAVYSVKA  182 (579)
Q Consensus       109 ~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~~-~-~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~  182 (579)
                      ...+....+.+|+.++|.|.+.++++   +.|.|  ++..+....... . ... .......|.|.++..+|+|.|+|.+
T Consensus         8 ~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~   85 (214)
T 1ow0_A            8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA   85 (214)
T ss_dssp             EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEE
T ss_pred             EECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEE
Confidence            34456666789999999999988754   68999  433332110000 0 000 0013457888889999999999999


Q ss_pred             EcCCceeEEEEEEEEeeccccCCCCccCCCeEecc-CCceeeCCCCeEEEEEEEEcc-CC-CeEEEEECCEEeccCc---
Q psy16852        183 VNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP-LQALLVPKDSTVTLEAEYTGT-PT-PEVKWFKNGKEIVSKD---  256 (579)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~i~~~~---  256 (579)
                      .+..+.......+.+        ..+..+|.+... +....+..|+.++|.|.+.|. |. +.+.|++||..+....   
T Consensus        86 ~~~~~~~~~~~~i~~--------~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  157 (214)
T 1ow0_A           86 AYPESKTPLTATLSK--------SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT  157 (214)
T ss_dssp             CCSSCSSCEEEEEEC--------CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE
T ss_pred             ecCCCCCceeEeecc--------CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee
Confidence            987664333333321        012345655332 222336679999999999984 54 4999999999886542   


Q ss_pred             --eEEe---CC-----eEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852        257 --IETK---DN-----VTKLVIKQTTKKTTGKYEIRVVNEAG  288 (579)
Q Consensus       257 --~~~~---~~-----~~~l~i~~~~~~d~G~y~C~a~n~~g  288 (579)
                        ....   ..     .+.|.+.....++.|.|+|+|.|...
T Consensus       158 ~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          158 WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             CCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             cCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence              1111   11     12344554444568999999999764

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=2.2e-14  Score=111.64  Aligned_cols=92  Identities=27%  Similarity=0.331  Sum_probs=76.9

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT-VESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      .|+.|...|.++.+.+|+.++|.|.+.+.|.+.+.|||+|..+..+.++.+.. .+....|.|.+++.+|+|.|+|.+  
T Consensus        12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~--   89 (115)
T 2cr6_A           12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA--   89 (115)
T ss_dssp             SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE--
T ss_pred             CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE--
Confidence            34578888999999999999999999998988999999999998776655442 245678999999999999999995  


Q ss_pred             CCeeeEEEEEEEEEecc
Q psy16852         84 IGGVATCSANLIVLEKE  100 (579)
Q Consensus        84 ~~g~~~~~~~~~v~~~~  100 (579)
                        |.....+.|.|..++
T Consensus        90 --g~~~~~~~L~V~~~p  104 (115)
T 2cr6_A           90 --GDQRASAALRVTEKP  104 (115)
T ss_dssp             --TTEECCEEEEEECCS
T ss_pred             --CCeeEEEEEEEECCC
Confidence              566777888887643

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.49  E-value=3.2e-15  Score=117.88  Aligned_cols=95  Identities=24%  Similarity=0.260  Sum_probs=74.4

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCe-EEEeeCCEEcCC--CCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPS-ICWYRGKEEILP--DNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~l~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      +|.+.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+..  ..++.+...                        
T Consensus        14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~------------------------   68 (122)
T 2cry_A           14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI------------------------   68 (122)
T ss_dssp             SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEE------------------------
T ss_pred             CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEe------------------------
Confidence            777776 6777899999999999999999996 999999988754  233332110                        


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccc-eeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQI-GDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                             ...++..+.|.|.+++.+|+ |.|+|.|.|.+|.....+.|.|+
T Consensus        69 -------~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~  112 (122)
T 2cry_A           69 -------STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ  112 (122)
T ss_dssp             -------EETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             -------cCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEEEEEEEEC
Confidence                   00012256799999999999 99999999999999988888875

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.49  E-value=2.3e-13  Score=100.78  Aligned_cols=83  Identities=12%  Similarity=0.220  Sum_probs=68.0

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      ++.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+                                 
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------------------------------   49 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------------------------------   49 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------------------------------
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------------------------------
Confidence            45566666777899999999999999999999999999988754321                                 


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLSLL  533 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  533 (579)
                                 +.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus        50 -----------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           50 -----------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID   86 (91)
T ss_dssp             -----------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             -----------CeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEEe
Confidence                       2489999999999999999999999755 45666653

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.49  E-value=2.6e-13  Score=104.42  Aligned_cols=92  Identities=21%  Similarity=0.291  Sum_probs=74.1

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCE-Eec-------CCCCEEEEEe-CCEEEEEEcCCCCCCCEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGT-ELH-------ATEHYLITTV-ESVSTLEIINPTKEDIGV   76 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~-~~~-------~~~~~~~~~~-~~~~~L~i~~~~~~d~G~   76 (579)
                      +|.|...|.++.+.+|++++|.|.+.+.+.+.+.|++++. .+.       ...++..... ....+|.|.+++.+|+|.
T Consensus         6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~   85 (108)
T 3m45_A            6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQ   85 (108)
T ss_dssp             --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEE
T ss_pred             CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeE
Confidence            5778889999999999999999999988888999999875 221       2235554332 347899999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEEe
Q psy16852         77 YTCKATNIGGVATCSANLIVLE   98 (579)
Q Consensus        77 Y~C~~~~~~g~~~~~~~~~v~~   98 (579)
                      |+|.+.| .+.....+.|.|.+
T Consensus        86 Y~C~~~n-~~~~~~~~~L~V~~  106 (108)
T 3m45_A           86 YTCSLFT-MPVKTSKAYLTVLG  106 (108)
T ss_dssp             EEEEECS-SSCEEEEEEEEEEC
T ss_pred             EEEEEEc-CCCcEEEEEEEEEc
Confidence            9999999 78788888888864

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.49  E-value=1.8e-13  Score=121.09  Aligned_cols=170  Identities=13%  Similarity=0.168  Sum_probs=107.1

Q ss_pred             ceEEccCCcEEEEEEEEee--cCCeEEEEECC--E---Ec---c-----------CCCCceEEEcCCCCeEEEEECcCCC
Q psy16852        114 PVIAEAQSPATLKATVTGR--PTPSICWYRGK--E---EI---L-----------PDNGHTMEFNPTTGECVLSISEATP  172 (579)
Q Consensus       114 ~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~---~~---~-----------~~~~~~~~~~~~~~~~~l~i~~~~~  172 (579)
                      .+.+.+|++++|.|.+.+.  +...+.||+..  .   .+   .           ...++.+..+...+..+|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA   88 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence            5678899999999999753  34789999842  1   11   0           1123444444445678899999999


Q ss_pred             CCCeEEEEEEEcCCc-------eeE--EEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEc-cC-CC
Q psy16852        173 QDEAVYSVKAVNTFG-------RAE--CRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TP-TP  241 (579)
Q Consensus       173 ~d~G~Y~C~~~~~~~-------~~~--~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~  241 (579)
                      +|+|.|.|.+.+..+       ...  ....+.+..       ....+|.+........+..|..+.|.|.+.+ .| .+
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~-------~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  161 (226)
T 3mlr_H           89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSS-------GTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  161 (226)
T ss_dssp             GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECC-------CCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCC
T ss_pred             ccCEEEEEeEccCCCcccccchhhhhCCccEEeecc-------CCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCe
Confidence            999999999976421       000  112333321       1123455543333333568999999999987 44 34


Q ss_pred             eEEEEECCEEeccCc-----e----EEeCCeEEEEEcccCCCCCeEEEEEEEcCCeeeEEE
Q psy16852        242 EVKWFKNGKEIVSKD-----I----ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTS  293 (579)
Q Consensus       242 ~v~W~~~~~~i~~~~-----~----~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~~~~~  293 (579)
                      .+.|  ++..+....     .    ......+.|.|.....+| |.|+|.|.|..+.....
T Consensus       162 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  219 (226)
T 3mlr_H          162 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  219 (226)
T ss_dssp             EEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEE
T ss_pred             EEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeE
Confidence            8999  443322111     0    111123578899998889 99999999987654433

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=105.17  Aligned_cols=98  Identities=19%  Similarity=0.272  Sum_probs=71.5

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEee---CCCeEEEeeCCE-EcCCC--CCeeEEEcCCCCeEEEEEccccCCCceeE
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGR---PTPSICWYRGKE-EILPD--NGHTMEFNPTTGECVLSISEATPQDEAVY  480 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~~v~W~~~~~-~l~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  480 (579)
                      .+.|+..+..+.+.+|+.++|.|.+.|.   |.|.|.|||++. .+...  .++.+..             .....    
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~-------------~~~~~----   74 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKE-------------SHNSA----   74 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEE-------------EECSS----
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEecc-------------ccccc----
Confidence            4566677788899999999999999875   789999999752 22211  1222210             00000    


Q ss_pred             EEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        481 SVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       481 ~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                  .....+.|+|.++..+|+|.|+|.|.|..|..++.+.|.|+
T Consensus        75 ------------~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~  115 (118)
T 2edn_A           75 ------------SNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE  115 (118)
T ss_dssp             ------------SCEEEEEEEESSCCTTTCSCEEEEEECSSCEEEEEECCEEE
T ss_pred             ------------cccceEEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEEE
Confidence                        01124569999999999999999999999999999999986

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.48  E-value=1.7e-12  Score=120.87  Aligned_cols=168  Identities=17%  Similarity=0.174  Sum_probs=105.1

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeC--------------CCeeEEEEC--CE--E-e-c-CC----------CCEEEE----
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHP--------------LPTMTWQKD--GT--E-L-H-AT----------EHYLIT----   56 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~--------------~~~v~W~~~--g~--~-~-~-~~----------~~~~~~----   56 (579)
                      ++..+.+.+|++++|.|.....+              ...+.||+.  |.  . + . .+          ....+.    
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            56779999999999999986443              236999872  32  1 1 0 10          111111    


Q ss_pred             -----EeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEecccCCCCCceecCCCceE-EccCC-cEEEEEEE
Q psy16852         57 -----TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFTKPLKPVI-AEAQS-PATLKATV  129 (579)
Q Consensus        57 -----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~g~-~~~l~C~~  129 (579)
                           ...++.+|+|.+++.+|+|.|+|.+.+..+.....+.+.|..      +|.+...+.... +..|+ .++|.|.+
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~------pP~V~v~p~~~~~~~~G~~~vtL~C~a  317 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK------PPKVSLMPATLARAAPGEAPPELLCLV  317 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB------CCEEEEESSSCCCCCTTCCCCCEEEEE
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc------CCeEeeccCcceeecCCCccEEEEEEe
Confidence                 122468999999999999999999999888777777777764      334433333322 34676 79999999


Q ss_pred             Eee-cC--CeEEEE-ECCE---EccCCCC---ceEEEcCCCC----eEEEEECcCCC-CCCeEEEEEEEcCC
Q psy16852        130 TGR-PT--PSICWY-RGKE---EILPDNG---HTMEFNPTTG----ECVLSISEATP-QDEAVYSVKAVNTF  186 (579)
Q Consensus       130 ~~~-p~--~~i~W~-~~~~---~~~~~~~---~~~~~~~~~~----~~~l~i~~~~~-~d~G~Y~C~~~~~~  186 (579)
                      .++ |.  +.|+|+ +++.   .+.....   .....+ .++    .+.|.+...+. ++.+.|+|.+.|..
T Consensus       318 ~GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~-~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          318 SHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHH-SDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             EEEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEEC-TTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             cCCcCCCCcEEEEEecCCCCCceecccccccccccccC-CCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence            875 55  699995 7651   1111100   000111 122    13466665543 34459999999875

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=2.3e-13  Score=103.47  Aligned_cols=87  Identities=21%  Similarity=0.362  Sum_probs=69.7

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC--CeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN--GHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      ++.+...+....+.+|+.++|.|.+.+ |.+.+.|+|++..+..+.  ++.+.                           
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~---------------------------   58 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIR---------------------------   58 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEE---------------------------
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEE---------------------------
Confidence            444777788889999999999999987 779999999999987665  33432                           


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              .++....|.|.+++.+|+|.|+|.|.|    ...++.|.|.
T Consensus        59 --------~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~V~   95 (103)
T 1x44_A           59 --------VEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVD   95 (103)
T ss_dssp             --------EETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEEEE
T ss_pred             --------EcCCEEEEEECCCCcccCEEEEEEECC----CcEEEEEEEe
Confidence                    244556799999999999999999988    4666777765

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=2.5e-13  Score=106.21  Aligned_cols=97  Identities=25%  Similarity=0.330  Sum_probs=77.1

Q ss_pred             CCcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeC----CEEEEEEcCCCCCCCEE
Q psy16852          1 MAEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE----SVSTLEIINPTKEDIGV   76 (579)
Q Consensus         1 ~~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~   76 (579)
                      |....||.+...+... +  .+...|.|.+.|.|.+.+.|+|+|..+..+.........    ....|.|.+++.+|+|.
T Consensus         3 L~V~~pP~i~~~~~~~-~--~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   79 (118)
T 1wwc_A            3 LTVYYPPRVVSLEEPE-L--RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN   79 (118)
T ss_dssp             -CCCCCCCCCCCCCCC-C--CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             EEEecCCceeccCCCe-e--ccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEE
Confidence            3456788877764433 2  366789999999999999999999999877766554332    35789999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEEecc
Q psy16852         77 YTCKATNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        77 Y~C~~~~~~g~~~~~~~~~v~~~~  100 (579)
                      |+|.|.|..|....++.+.|...|
T Consensus        80 Y~C~a~N~~G~~~~~~~l~v~~~P  103 (118)
T 1wwc_A           80 YTLIAKNPLGTANQTINGHFLKEP  103 (118)
T ss_dssp             EEEEEEETTEEEEEEEEECCSCCC
T ss_pred             EEEEEECCCCeEeeEEEEEEccCC
Confidence            999999999999988888776543

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.47  E-value=1.9e-12  Score=116.97  Aligned_cols=196  Identities=14%  Similarity=0.190  Sum_probs=113.7

Q ss_pred             EEeccceeeeeeeeeecc--ccCceeeeecCeeEEEeeeCCCeE-EEEECC-EE---ccCCCeEEEEEC-CCCeEEEEEc
Q psy16852        298 ITVAEAETVMMDVRVESH--PTASFQWFIHSEPVVVTGKPTPLV-TWSHDG-TP---MKEGKEVTIYQD-TDGLCKLAIS  369 (579)
Q Consensus       298 v~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~p~~~i-~W~~~~-~~---~~~~~~~~~~~~-~~~~~~l~i~  369 (579)
                      +.+.+|+.+.|.|.....  ....+.|+...     .+.....+ ....++ ..   -....++....+ ..+.++|.|.
T Consensus        33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  107 (256)
T 3sob_H           33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQA-----PGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMN  107 (256)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEEC-----TTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EEEcCCCCEEEEEEeeccccCCCEEEEEEEC-----CCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEEC
Confidence            457889999999987642  23456664321     11111111 111111 10   011245555433 3466789999


Q ss_pred             ccCCCCCEEEEEEEEcCce-----------eEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEee-C-C
Q psy16852        370 EVFPENAGLYSCTAVNPVG-----------EAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGR-P-T  436 (579)
Q Consensus       370 ~~~~~d~G~Y~C~a~n~~g-----------~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~  436 (579)
                      +++.+|+|.|.|.+.+..+           .......|.|..  ....+|.+........+..|+.++|.|.+.+. | .
T Consensus       108 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~--~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~  185 (256)
T 3sob_H          108 SLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSS--ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  185 (256)
T ss_dssp             SCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECS--SCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSC
T ss_pred             CCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEec--CCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCC
Confidence            9999999999999987531           122334566653  22345666533333345689999999999874 4 3


Q ss_pred             CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEE
Q psy16852        437 PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCR  516 (579)
Q Consensus       437 ~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  516 (579)
                      +.+.|  ++..+....               .-........|.|...              +.|+|.....+| |.|+|.
T Consensus       186 ~~v~W--~~~~~~~~~---------------~~~~~~~~~~g~~~~~--------------s~L~i~~~~~~d-~~ytC~  233 (256)
T 3sob_H          186 VTVSW--NSGALTSGV---------------HTFPAVLQSSGLYSLS--------------SVVTVPSSSLGT-QTYICN  233 (256)
T ss_dssp             CEEEE--GGGTBCTTE---------------EECCCEECTTSCEEEE--------------EEEEEEGGGTTT-CCCEEE
T ss_pred             eEEEE--CCcccCCCe---------------EeCCceeCCCCCEEEE--------------EEEEECHHHcCC-ceEEEE
Confidence            47999  444332110               0001112233555432              449999999999 999999


Q ss_pred             EEeCCeeEEEEEEEEE
Q psy16852        517 AENVAGSVTCTATLSL  532 (579)
Q Consensus       517 a~n~~g~~~~~~~l~v  532 (579)
                      |.|..+.......+.+
T Consensus       234 v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          234 VNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             EEEGGGTEEEEEECCC
T ss_pred             EEeCCCCcceEEEecc
Confidence            9999988777777664

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.47  E-value=5.8e-13  Score=115.78  Aligned_cols=167  Identities=13%  Similarity=0.158  Sum_probs=102.0

Q ss_pred             ecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--E---Ecc-------CCCCceEEEc-CCCCeEEEEECcCCCCCC
Q psy16852        109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--E---EIL-------PDNGHTMEFN-PTTGECVLSISEATPQDE  175 (579)
Q Consensus       109 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~---~~~-------~~~~~~~~~~-~~~~~~~l~i~~~~~~d~  175 (579)
                      ...+..+.+.+|+.++|.|.+.+.+ ..+.||+..  .   .+.       ...+..+..+ ...+..+|.|.+++.+|+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~   83 (207)
T 1ypz_E            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS   83 (207)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred             EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence            3345667889999999999997543 489999853  1   111       1234444443 336678999999999999


Q ss_pred             eEEEEEEEcCCc---------ee--EEEEEEEEeeccccCCCCccCCCeEeccCCceeeCCCCeEEEEEEEEcc-CC-Ce
Q psy16852        176 AVYSVKAVNTFG---------RA--ECRANLVLRKATTIDKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGT-PT-PE  242 (579)
Q Consensus       176 G~Y~C~~~~~~~---------~~--~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~  242 (579)
                      |.|.|.+.+..+         ..  .....+.|....     ....+|.+..       ..+ .+.|.|.+.+. |. +.
T Consensus        84 G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~-----~~~~~P~v~~-------~~~-~~~l~C~~~g~~P~~~~  150 (207)
T 1ypz_E           84 GTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKS-----QPPAKPSVFI-------MKN-GTNVACLVKDFYPKEVT  150 (207)
T ss_dssp             EEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCC-----CCCCCCEEEE-------EEE-TTEEEEEEEEESSSCCE
T ss_pred             EEEEEEEecCCcccccccccceeeecCccEEEEccCC-----CCCCCCeEEE-------eCC-CCeEEEEEeeEeCCCeE
Confidence            999999987632         11  112344443210     0112333321       111 26999999874 54 69


Q ss_pred             EEEEECCEEeccCceE-EeCCeEEEEEcccCC-CCCeEEEEEEEcCCeee
Q psy16852        243 VKWFKNGKEIVSKDIE-TKDNVTKLVIKQTTK-KTTGKYEIRVVNEAGEA  290 (579)
Q Consensus       243 v~W~~~~~~i~~~~~~-~~~~~~~l~i~~~~~-~d~G~y~C~a~n~~g~~  290 (579)
                      +.|+++ ..+...... .......+.+..... ++.|.|+|.|.|..+..
T Consensus       151 v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          151 ISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             EEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred             EEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCccE
Confidence            999999 666543211 111112233333333 67899999999987653

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.47  E-value=1.2e-13  Score=107.10  Aligned_cols=100  Identities=24%  Similarity=0.426  Sum_probs=78.3

Q ss_pred             eeEEEEEEEEEEecccCCCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEE
Q psy16852        388 GEAVAAATLAVEEKEESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL  467 (579)
Q Consensus       388 g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l  467 (579)
                      |....++.|.|..     .+|.+...+....+.+|+.+.|.|.+.+.  |.+.|+|++..+..+.++.+..         
T Consensus         5 g~~~~~~~l~V~~-----~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~---------   68 (113)
T 2edh_A            5 SSGRTSAMLTVRA-----LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQ---------   68 (113)
T ss_dssp             CCCCCCCCCCCCC-----SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEE---------
T ss_pred             CCCcEEEEEEEEc-----CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEE---------
Confidence            4444555666665     35788777888899999999999999764  6899999999887666655432         


Q ss_pred             EEccccCCCceeEEEEeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       468 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                                                ++..+.|.|.+++.+|+|.|+|.|    |....++.|.|.
T Consensus        69 --------------------------~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~  104 (113)
T 2edh_A           69 --------------------------DGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVR  104 (113)
T ss_dssp             --------------------------ETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEEC
T ss_pred             --------------------------CCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEEe
Confidence                                      444566999999999999999999    777888888875

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=3.4e-13  Score=105.43  Aligned_cols=93  Identities=19%  Similarity=0.272  Sum_probs=69.3

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      +|.+..... ..  ..+...|.|.+.|.|.|.+.|+|+|..+..+.+..+.....                         
T Consensus         8 pP~i~~~~~-~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-------------------------   59 (118)
T 1wwc_A            8 PPRVVSLEE-PE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE-------------------------   59 (118)
T ss_dssp             CCCCCCCCC-CC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEEC-------------------------
T ss_pred             CCceeccCC-Ce--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEecc-------------------------
Confidence            666554322 12  23667899999999999999999999997765544322000                         


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                            .....+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus        60 ------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  100 (118)
T 1wwc_A           60 ------GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL  100 (118)
T ss_dssp             ------SSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             ------CccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEc
Confidence                  01134569999999999999999999999999999998864

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=9.3e-14  Score=104.66  Aligned_cols=86  Identities=19%  Similarity=0.386  Sum_probs=72.4

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      ...+|..+.+.+|+.++|.|.+.+.| +.+.|+|++..+....++.+.    ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus         6 ~~~~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~   80 (99)
T 2cr3_A            6 SGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSD   80 (99)
T ss_dssp             CSCCEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEE
T ss_pred             CCCCCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceE
Confidence            34567889999999999999998876 699999999988766665443    3589999999999999999999999988


Q ss_pred             EEEEEEEEEec
Q psy16852         89 TCSANLIVLEK   99 (579)
Q Consensus        89 ~~~~~~~v~~~   99 (579)
                      ...+.|.|...
T Consensus        81 ~~~~~l~V~~~   91 (99)
T 2cr3_A           81 TTYFSVNVSDA   91 (99)
T ss_dssp             EEEEEECBCSC
T ss_pred             EEEEEEEEecC
Confidence            77777777653

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.8e-13  Score=103.85  Aligned_cols=89  Identities=15%  Similarity=0.259  Sum_probs=72.3

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      .++.|..++.+..+.+|+.++|.|.+.+.|.+ .+.|+|+|..+..+.++.+..                          
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~--------------------------   60 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR--------------------------   60 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEE--------------------------
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEE--------------------------
Confidence            36778888888999999999999999988754 899999999987766655433                          


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                               ++..+.|.|.+++.+|+|.|+|.|.|    ...++.|.|.
T Consensus        61 ---------~~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~a~L~V~   96 (104)
T 2eny_A           61 ---------QGRKYILVVREAAPSDAGEVVFSVRG----LTSKASLIVR   96 (104)
T ss_dssp             ---------ETTEEEEEECSCCTTTCSCEEEEETT----EEEEECEEEE
T ss_pred             ---------cCCEEEEEECCCCHHHCEEEEEEECC----eeEEEEEEEe
Confidence                     44556799999999999999999844    5678888875

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.46  E-value=1.8e-13  Score=124.32  Aligned_cols=177  Identities=14%  Similarity=0.182  Sum_probs=106.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEee--CCCeeEEEECC--E---Ee---c-----------CCCCEEEEEeC--CEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQKDG--T---EL---H-----------ATEHYLITTVE--SVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~g--~---~~---~-----------~~~~~~~~~~~--~~~~L~i~   67 (579)
                      ..|..+.+.+|++++|.|.+.+.  ....+.|||..  .   .+   .           ...++......  ...+|+|.
T Consensus        28 ~q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  107 (267)
T 3u1s_H           28 VQSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELR  107 (267)
T ss_dssp             EECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEEC
T ss_pred             EeeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEEC
Confidence            34567889999999999999652  34589999832  1   11   0           12455554432  45789999


Q ss_pred             CCCCCCCEEEEEEEEcC------Ce------------e-------eEEEEEEEEEecccCCCCCceecCCCceEEccCCc
Q psy16852         68 NPTKEDIGVYTCKATNI------GG------------V-------ATCSANLIVLEKEESGEAPKFTKPLKPVIAEAQSP  122 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~------~g------------~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~  122 (579)
                      +++.+|+|.|+|.+.+.      .+            .       ....+.+.|...  ...+|.+..........+|+.
T Consensus       108 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~--~~~~P~v~~~~~~~~~~~g~~  185 (267)
T 3u1s_H          108 GLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSA--STKGPSVFPLAPSSKSTSGGT  185 (267)
T ss_dssp             SCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCC--CCBCCEEEEECCCGGGEETTE
T ss_pred             CCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCC--CCCCCEEEEecCCcccCCCCc
Confidence            99999999999999621      01            0       111345566422  123444442122222347999


Q ss_pred             EEEEEEEEee-c-CCeEEEEECCEEccCCCCceEEEcCCCC----eEEEEECcCCCCCCeEEEEEEEcCCceeEEE
Q psy16852        123 ATLKATVTGR-P-TPSICWYRGKEEILPDNGHTMEFNPTTG----ECVLSISEATPQDEAVYSVKAVNTFGRAECR  192 (579)
Q Consensus       123 ~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (579)
                      ++|.|.+.++ | ++.+.|  ++..+.............++    .+.|.|.....+| +.|+|.+.|..+.....
T Consensus       186 ~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  258 (267)
T 3u1s_H          186 AALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  258 (267)
T ss_dssp             EEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEE
T ss_pred             EEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceE
Confidence            9999999774 4 468999  44433221100000001111    2468888888888 99999999987654433

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.5e-13  Score=104.60  Aligned_cols=88  Identities=18%  Similarity=0.356  Sum_probs=72.2

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.+..++....+.+|+.++|.|.+.+ |.+.+.|++++..+..+.++.+.                            
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~----------------------------   57 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVV----------------------------   57 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEE----------------------------
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEE----------------------------
Confidence            4788888888899999999999999997 88899999999888766555443                            


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                             .++..+.|.|.+++.+|+|.|+|.|.|    ...++.|.|.
T Consensus        58 -------~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~   94 (103)
T 2edf_A           58 -------CEGTMAMLVIRGASLKDAGEYTCEVEA----SKSTASLHVE   94 (103)
T ss_dssp             -------EETTEEEEEESSCCTTTCSEEEEECSS----CEEEEEEEEC
T ss_pred             -------ECCCEEEEEECCCCcccCEEEEEEEcc----CCcEEEEEEe
Confidence                   244566799999999999999999999    3667777765

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.46  E-value=4.5e-13  Score=100.02  Aligned_cols=88  Identities=25%  Similarity=0.395  Sum_probs=71.0

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      ..|.|...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+..+.++.+..                           
T Consensus         7 ~~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~---------------------------   58 (95)
T 2k1m_A            7 PVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLAT---------------------------   58 (95)
T ss_dssp             CCCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEE---------------------------
T ss_pred             CCCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEE---------------------------
Confidence            35677777888899999999999999 78999999999999887666655432                           


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ++....|.|.+++.+|+|.|+|.|    |....++.|.|.
T Consensus        59 --------~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~l~V~   94 (95)
T 2k1m_A           59 --------EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI   94 (95)
T ss_dssp             --------ETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEEEEEE
T ss_pred             --------cCCEEEEEEcCCCcccCEEEEEEE----CCceEEEEEEEe
Confidence                    344556899999999999999999    666677777764

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.46  E-value=3.7e-13  Score=104.41  Aligned_cols=94  Identities=19%  Similarity=0.300  Sum_probs=73.1

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECCEEecCCCCEEEEEe-C-------CEEEEEEcCCCCC
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDGTELHATEHYLITTV-E-------SVSTLEIINPTKE   72 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g~~~~~~~~~~~~~~-~-------~~~~L~i~~~~~~   72 (579)
                      ...+|.|...|.+..+.+|++++|.|.+.+.+  .+.+.|++++..+........... .       ....|.|.+++.+
T Consensus         7 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   86 (112)
T 3so5_A            7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT   86 (112)
T ss_dssp             -CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGG
T ss_pred             CCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccc
Confidence            45689999999999999999999999998653  579999999998865432111111 0       1478999999999


Q ss_pred             CCEEEEEEEEcCCeee-EEEEEEEE
Q psy16852         73 DIGVYTCKATNIGGVA-TCSANLIV   96 (579)
Q Consensus        73 d~G~Y~C~~~~~~g~~-~~~~~~~v   96 (579)
                      |+|.|+|.|.|..|.. +..+.|.|
T Consensus        87 D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           87 SEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999999873 45666665

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.46  E-value=1.1e-13  Score=105.96  Aligned_cols=91  Identities=20%  Similarity=0.331  Sum_probs=73.3

Q ss_pred             CCCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       405 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      ..+|.+..++....+.+|+.+.|.|.+.+.|.+ +.|++++..+..+.++.+..                          
T Consensus         6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~--------------------------   58 (106)
T 2dlt_A            6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISH--------------------------   58 (106)
T ss_dssp             CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEE--------------------------
T ss_pred             CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEE--------------------------
Confidence            357888888889999999999999999988887 99999999887766655432                          


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                               ++....|.|.++..+|+|.|+|.|.|.  ....++.|.|.
T Consensus        59 ---------~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           59 ---------VGRFHKLVIDDVRPEDEGDYTFVPDGY--ALSLSAKLNFL   96 (106)
T ss_dssp             ---------ETTEEEEEESSCCTTTCSCEEEEEETS--CCCCCBCEEEE
T ss_pred             ---------eCCEEEEEECCCCcCCCEEEEEEEccC--CceEEEEEEEE
Confidence                     344566999999999999999999998  44455566654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	579
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-19
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-12
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-10
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-17
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-11
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	4e-11
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-16
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	9e-11
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-09
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-07
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-16
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-13
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-12
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-16
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-13
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	8e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-15
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-10
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-06
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-14
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-08
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-14
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	5e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	8e-14
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	6e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-13
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-09
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	6e-11
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	5e-09
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-08
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-13
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-11
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	8e-08
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	7e-13
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-09
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	5e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-06
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	5e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-13
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-12
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-10
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	9e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-12
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-06
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-12
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	5e-07
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	6e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	5e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-12
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	7e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	9e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	8e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	9e-12
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-11
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-06
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-06
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-04
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-11
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-05
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	5e-11
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	7e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-10
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-10
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	6e-05
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	3e-10
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	3e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	0.003
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-10
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.002
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-09
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	3e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-09
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-09
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-09
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-09
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	4e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.002
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-09
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	6e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-09
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	1e-04
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-09
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	6e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	7e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	4e-09
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	3e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	8e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	7e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-04
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	7e-09
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	8e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	3e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-08
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	5e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	4e-07
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.003
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	5e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	2e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	2e-04
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.001
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	7e-07
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-06
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	4e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	1e-06
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	4e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	5e-06
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	8e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	8e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.001
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	5e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.002
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	8e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	9e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	7e-04
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	2e-04
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	2e-04
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	4e-04
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	0.003
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	5e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	7e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.001
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.003
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.002

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-19
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           P+ I+  +       +      KV G    T TW K   ++  +EH  +   E+ S L I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 67  INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEESGEAPKFT 109
           +   +E  G YT    N  G      NL V++K    + P  T
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP---DPPAGT 100

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 5e-14
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
           P+  +  +     A     L   VTG    +  W + +++I       +E +       L
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG--SKL 58

Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKP 206
           +I  A  +    Y++   N  G  + + NL     T +DKP
Sbjct: 59  TILAARQEHCGCYTLLVENKLGSRQAQVNL-----TVVDKP 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 6e-12
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVI 268
           P I++  +   V    +V L  + TGT      W K  K+I   +   +E  +N +KL I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
               ++  G Y + V N+ G  +   ++T+ 
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVV 91

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 6e-11
 Identities = 22/140 (15%), Positives = 36/140 (25%), Gaps = 41/140 (29%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
           P+  +  +     A     L   VTG    +  W + +++I       +E +       L
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG--SKL 58

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
           +I  A  +    Y                                 T   EN  GS    
Sbjct: 59  TILAARQEHCGCY---------------------------------TLLVENKLGSRQAQ 85

Query: 528 ATLSLLPESEVTDVMESPRF 547
             L+      V D  + P  
Sbjct: 86  VNLT------VVDKPDPPAG 99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
             VTG      TW      ++E + + +    +G  KL I     E+ G Y+    N +G
Sbjct: 22  GKVTGTQPITCTWMKFRKQIQESEHMKVENSENG-SKLTILAARQEHCGCYTLLVENKLG 80

Query: 389 EAVAAATLAVEEKEESGEAPKFT 411
              A   L V +K    + P  T
Sbjct: 81  SRQAQVNLTVVDKP---DPPAGT 100

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 2e-17
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 6  APRFI--EKIQPVVSHQE--QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES- 60
          AP +   EK++  +          F C   G+P+PTM W K+G E           V + 
Sbjct: 1  APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
            +L + +    D G YTC   N  G    + +L V+
Sbjct: 61 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 1e-13
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 105 APKFTKPLKP----VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 160
           AP +T   K         A +    +    G P P++ W +  +E   ++     +    
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG-YKVRN 59

Query: 161 GECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
               L +    P D+  Y+    N +G      +L
Sbjct: 60  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 94

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 1e-12
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 211 APTIVRPL----QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD----IETKDN 262
           AP          +   VP  +TV       G P P ++W KNGKE   +      + ++ 
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 263 VTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
              L+++       G Y   V NE G    +  + +
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 17/71 (23%), Positives = 26/71 (36%)

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
                G P P + W  +G   K+   +  Y+  +    L +  V P + G Y+C   N  
Sbjct: 26  RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEY 85

Query: 388 GEAVAAATLAV 398
           G       L V
Sbjct: 86  GSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 38/131 (29%)

Query: 407 APKFTKPLKP----VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
           AP +T   K         A +    +    G P P++ W +  +E   ++     +    
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG-YKVRN 59

Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
               L +    P D+  Y                                 TC  EN  G
Sbjct: 60  QHWSLIMESVVPSDKGNY---------------------------------TCVVENEYG 86

Query: 523 SVTCTATLSLL 533
           S+  T  L ++
Sbjct: 87  SINHTYHLDVV 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.4 bits (179), Expect = 1e-16
 Identities = 30/95 (31%), Positives = 38/95 (40%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
           PRFI K       + Q A F C+V     P +TW KD  EL  +  Y+     +   L I
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 67  INPTKEDIGVYTCKATNIGGVATCSANLIVLEKEE 101
                +D G YT +A N  G       L V    E
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.4 bits (135), Expect = 9e-11
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
           P+F              A     V     P + W++   E+     +   +N       L
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGND--YGL 59

Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANL 195
           +I+     D+  Y+V+A N++G  E    L
Sbjct: 60  TINRVKGDDKGEYTVRAKNSYGTKEEIVFL 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.0 bits (121), Expect = 7e-09
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVI 268
           P  +       V +  +         +  P V W K+ +E+            N   L I
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
            +      G+Y +R  N  G       + +T 
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR 93

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.1 bits (116), Expect = 4e-08
 Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 35/130 (26%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
           P+F              A     V     P + W++   E+     +   +N       L
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGND--YGL 59

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
           +I+     D+  Y                                 T RA+N  G+    
Sbjct: 60  TINRVKGDDKGEY---------------------------------TVRAKNSYGTKEEI 86

Query: 528 ATLSLLPESE 537
             L++   SE
Sbjct: 87  VFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (107), Expect = 7e-07
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
             V     P+VTW  D   +K+  +    +       L I+ V  ++ G Y+  A N  G
Sbjct: 23  CRVIASSPPVVTWHKDDRELKQSVKYM-KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 81

Query: 389 EAVAAATLAVEEKEE 403
                  L V    E
Sbjct: 82  TKEEIVFLNVTRHSE 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 3e-16
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
          AP+  E+IQ     Q   A F  +V G P P   W K+G ++  ++       E      
Sbjct: 4  APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 66 I-INPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
          +  + T ED      KA NI G  +  A L+V  K
Sbjct: 64 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 2e-13
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           EAPK  + ++       S A  +  V G+P P   WY+   +I   +     +       
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
           +  I + T +D A   VKA+N  G     A L+++
Sbjct: 63  L-VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 3e-12
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIETKDNVT 264
           +EAP I   +Q+  V + S         G P PE +W+KNG +I           +DNV 
Sbjct: 2   MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 61

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           +LVI+  T + +    ++ +N AGE  +   + +
Sbjct: 62  ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 7e-10
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 34/126 (26%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
           EAPK  + ++       S A  +  V G+P P   WY+   +I   +     +       
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
           +  I + T +D A                                     +A N+AG  +
Sbjct: 63  L-VIRDVTGEDSASI---------------------------------MVKAINIAGETS 88

Query: 526 CTATLS 531
             A L 
Sbjct: 89  SHAFLL 94

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 8e-09
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
              V     A F+       V V GKP P   W  +G  ++    +  Y   D +C+L I
Sbjct: 13  SQTVGQGSDAHFR-------VRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVI 65

Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEEK 401
            +V  E++      A+N  GE  + A L V+ K
Sbjct: 66  RDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 70.6 bits (172), Expect = 9e-16
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 6  APRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
          AP++ +K + V+  ++ Q     CKV G P P + W  +   L      +  +      L
Sbjct: 2  APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS-----GL 56

Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
           I      D G Y C+ATN  G       + V
Sbjct: 57 VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 62.5 bits (151), Expect = 6e-13
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 105 APKFT-KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           APK+  KP K ++ +     T+   VTG P P++ W    + +               + 
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT-------DS 54

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
            L I      D+  Y  +A N  G       +
Sbjct: 55  GLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 58.6 bits (141), Expect = 1e-11
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 211 APTIV-RPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIK 269
           AP    +P + ++V +   VT+  + TG P P V W  N K +        D+   LVIK
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS--GLVIK 59

Query: 270 QTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
                  G Y  R  NE G+      V +
Sbjct: 60  GVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.6 bits (128), Expect = 8e-10
 Identities = 22/126 (17%), Positives = 34/126 (26%), Gaps = 41/126 (32%)

Query: 407 APKFT-KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
           APK+  KP K ++ +     T+   VTG P P++ W    + +               + 
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT-------DS 54

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
            L I      D+  Y                                  CRA N  G   
Sbjct: 55  GLVIKGVKNGDKGYY---------------------------------GCRATNEHGDKY 81

Query: 526 CTATLS 531
               + 
Sbjct: 82  FETLVQ 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 52.5 bits (125), Expect = 2e-09
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPV 387
           P  VTG P P V WSH+  P+  G+             L I  V   + G Y C A N  
Sbjct: 24  PCKVTGLPAPNVVWSHNAKPLSGGRATVTD------SGLVIKGVKNGDKGYYGCRATNEH 77

Query: 388 GEAVAAATLAV 398
           G+      + V
Sbjct: 78  GDKYFETLVQV 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 9e-15
 Identities = 25/91 (27%), Positives = 44/91 (48%)

Query: 8  RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEII 67
          R + K + +  ++ + A F+C  +G P+PT+TW + G  L  +  + +TT +  ST EI 
Sbjct: 1  RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 68 NPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
          +    D G Y+    N  G       L + +
Sbjct: 61 SVQASDEGNYSVVVENSEGKQEAEFTLTIQK 91

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 4e-10
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 166
           +     + +       A       G P P++ W R  + +     H +            
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE-- 58

Query: 167 ISEATPQDEAVYSVKAVNTFGRAECRANLVLRK 199
           IS     DE  YSV   N+ G+ E    L ++K
Sbjct: 59  ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 91

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 20/103 (19%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
           +TV E E+       +  P  +  W    + +  + +     T       +         
Sbjct: 9   MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS------- 61

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
                        V   + G YS    N  G+  A  TL +++
Sbjct: 62  -------------VQASDEGNYSVVVENSEGKQEAEFTLTIQK 91

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 214 IVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTK---LVIKQ 270
           I+   +++ V +  +     +  G P P V W + G+ + +                I  
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTI 298
                 G Y + V N  G+     ++TI
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 17/123 (13%), Positives = 27/123 (21%), Gaps = 35/123 (28%)

Query: 409 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 468
           +     + +       A       G P P++ W R  + +     H +            
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE-- 58

Query: 469 ISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTA 528
           IS     DE  Y                                 +   EN  G      
Sbjct: 59  ISSVQASDEGNY---------------------------------SVVVENSEGKQEAEF 85

Query: 529 TLS 531
           TL+
Sbjct: 86  TLT 88

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.6 bits (164), Expect = 1e-14
 Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 7   PRFIEKIQP--VVSHQEQPALFTCKVEGHPLPTMTWQKDGT--ELHATEHYLITTVESVS 62
           P    +       ++  Q     C  +G P PTM+W KDG   E    +       +  S
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 63  TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
            L I N  K D   Y C A N  G    S +L V  K
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 106 PKFTKPLKPVIAEAQ--SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           P        V A A      TL     G P P++ W +  E I  +     +   +    
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANL-VLRK 199
            L+I      DEA Y   A N  G  +   +L V  K
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDT-DGLCKLAISEVFPENAGLYSCTAVNPVGE 389
             G P P ++W+ DG P++  +E        D   +L I  V   +   Y C A N  GE
Sbjct: 29  ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE 88

Query: 390 AVAAATLAVEEK 401
             A+  L V  K
Sbjct: 89  QDASIHLKVFAK 100

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 212 PTIVRPLQALLVPKD--STVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVT 264
           PT+      +    +   +VTL  +  G P P + W K+G+ I +++         D+ +
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 265 KLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           +L I+   K    +Y     N+AGE   S  + +  
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 25/128 (19%), Positives = 34/128 (26%), Gaps = 35/128 (27%)

Query: 408 PKFTKPLKPVIAEAQ--SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
           P        V A A      TL     G P P++ W +  E I  +     +   +    
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
            L+I      DEA Y                                  C AEN AG   
Sbjct: 64  ELTIRNVDKNDEAEY---------------------------------VCIAENKAGEQD 90

Query: 526 CTATLSLL 533
            +  L + 
Sbjct: 91  ASIHLKVF 98

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 4e-14
 Identities = 28/105 (26%), Positives = 38/105 (36%), Gaps = 14/105 (13%)

Query: 7   PRFIEKI-QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH------------- 52
           P     +     +       F CKV     P + W K   +  +                
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 53  YLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
            + TT + +  L I N T ED G YTC A N  G++  SA L VL
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 5e-10
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 23/131 (17%)

Query: 404 SGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT 462
           S   P     L                 V     P I W +  E+     G         
Sbjct: 1   SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL----- 55

Query: 463 GECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG 522
                              +K         TD    VL I  +T +  G+ TC A N  G
Sbjct: 56  -----------------PYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 98

Query: 523 SVTCTATLSLL 533
               +A L++L
Sbjct: 99  ISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 4e-09
 Identities = 20/106 (18%), Positives = 26/106 (24%), Gaps = 12/106 (11%)

Query: 102 SGEAPKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEI-----------LPD 149
           S   P     L                 V     P I W +  E+            L  
Sbjct: 1   SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 60

Query: 150 NGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
                         VL I   T +D   Y+  A N+ G +   A L
Sbjct: 61  LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 106

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 17/106 (16%)

Query: 210 EAPTIVRPL-QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK------------- 255
             P +   L           V    +      P ++W K+ ++  SK             
Sbjct: 3   HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 256 ---DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
                 T   +  L I+  T +  G+Y     N  G +  S  +T+
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 7/101 (6%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
            +      V    +V S      QW  H E       P  L                 + 
Sbjct: 15  ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA-------AGVN 67

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
                +  L I  V  E+AG Y+C A N +G +  +A L V
Sbjct: 68  TTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 8e-14
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 12/105 (11%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQKD---------GTELHATEHY 53
              F+ + Q           F+ +V G  L   P + W K          G  L   + Y
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 54  LITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
              +   +  L I +      G Y C+ +        + NL V E
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 10/106 (9%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILPDNG-------HTM 154
              F    +          T  A V G      P + W++GK   L            + 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 155 EFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKA 200
           +         L I++A P     Y  +            NL + +A
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA 109

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 8/103 (7%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
             V    ++    RV           +   PVV   K   +   S  G  ++        
Sbjct: 14  GEVTVGGSITFSARVAGAS-------LLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
                L +L I++  P   G Y C          +   L V E
Sbjct: 67  SK-VYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 15/128 (11%), Positives = 23/128 (17%), Gaps = 29/128 (22%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILPDNGHTMEFNPTTG 463
              F    +          T  A V G      P + W++GK   L            + 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
                                        +      L I+       G   C        
Sbjct: 64  --------------------------DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKF 97

Query: 524 VTCTATLS 531
                 L+
Sbjct: 98  DCSNFNLT 105

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 25/108 (23%), Positives = 34/108 (31%), Gaps = 17/108 (15%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTP---TPEVKWFKNGKE------------IVSK 255
               V   Q   V    ++T  A   G      P VKWFK                  S 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 256 DIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
           D  +K  + +L I       TG Y   V  +     +  +  +TV EA
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCS--NFNLTVHEA 109

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.0 bits (157), Expect = 1e-13
 Identities = 18/92 (19%), Positives = 30/92 (32%)

Query: 5  LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
          L P+ +   + +               G P PT TW    +        L+    S +++
Sbjct: 1  LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
             +  + D G Y  K  N  G       +IV
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.3 bits (124), Expect = 2e-09
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 2/94 (2%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
            PK     + +  +A     L+    G P P+  W  G           +  +  +    
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG--AALAPELLVDAKSSTTS 59

Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
           +    A   D   Y +K  N  G  E    ++++
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNV---TKLV 267
            P I+   + + +    T  LE ++ G P P   W               D     T + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 268 IKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
                +  +G Y+++V NE GE      V +
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 14/124 (11%), Positives = 26/124 (20%), Gaps = 35/124 (28%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
            PK     + +  +A     L+    G P P+  W  G           +  +  +    
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG--AALAPELLVDAKSSTTS 59

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
           +    A   D   Y                                   + +N  G    
Sbjct: 60  IFFPSAKRADSGNY---------------------------------KLKVKNELGEDEA 86

Query: 527 TATL 530
              +
Sbjct: 87  IFEV 90

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
           T    +++++  T + +       V   G P P  TW+   +      E+ +   +    
Sbjct: 7   TASRKIKIKAGFTHNLE-------VDFIGAPDPTATWTVGDSGAALAPELLVDAKSST-T 58

Query: 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
            +        ++G Y     N +GE  A   + V+
Sbjct: 59  SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 64.1 bits (155), Expect = 2e-13
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 5  LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
          + P F + I  +   +   A F CKVEG+P P + W KD   +  + H+ I   E  +  
Sbjct: 7  VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 66

Query: 65 EII-NPTKEDIGVYTCKATNIGGVATCSANLIV 96
            I     +D   YTCKA N  G ATC+A L+V
Sbjct: 67 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 57.2 bits (137), Expect = 6e-11
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 100 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
           E+    P FTK +  +     S A     V G P P + W++    +  ++ H       
Sbjct: 3   EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV-KESRHFQIDYDE 61

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
            G C L+ISE    D+A Y+ KAVN+ G A C A L+
Sbjct: 62  EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 98

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 51.8 bits (123), Expect = 5e-09
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 204 DKPRVLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS----KDIET 259
           +KP V   P   + +  + V + S    + +  G P PEV WFK+   +      +    
Sbjct: 3   EKPHV--KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 60

Query: 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
           ++    L I +       KY  + VN  GEA  +  + +
Sbjct: 61  EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 48.3 bits (114), Expect = 8e-08
 Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
           D+ V     A F          V G P P V W  D  P+KE +   I  D +G C L I
Sbjct: 17  DMEVVEGSAARFD-------CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTI 69

Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
           SEV  ++   Y+C AVN +GEA   A L VE 
Sbjct: 70  SEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 32/130 (24%), Positives = 44/130 (33%), Gaps = 34/130 (26%)

Query: 402 EESGEAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
           E+    P FTK +  +     S A     V G P P + W++    +  ++ H       
Sbjct: 3   EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV-KESRHFQIDYDE 61

Query: 462 TGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA 521
            G C L+ISE    D+A Y                                 TC+A N  
Sbjct: 62  EGNCSLTISEVCGDDDAKY---------------------------------TCKAVNSL 88

Query: 522 GSVTCTATLS 531
           G  TCTA L 
Sbjct: 89  GEATCTAELL 98

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.7 bits (154), Expect = 3e-13
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
          P +++ I    +       ++C   G P P + W +DG  L +     ++       L  
Sbjct: 2  PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG----ELRF 57

Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIV 96
               ED G+Y C A N  G    SA L V
Sbjct: 58 SKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.6 bits (138), Expect = 3e-11
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
           P +   +    A+  S        +G+P P++ W R  + +   N   +          L
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG------GEL 55

Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
             S+   +D  +Y   A N  G     A L ++
Sbjct: 56  RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.5 bits (130), Expect = 4e-10
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQT 271
           P  +  +        S +      +G P P V+W ++G+ + S++        +L   + 
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG-GELRFSKL 60

Query: 272 TKKTTGKYEIRVVNEAGEARTSGSVTI 298
             + +G Y+    N+ G    S  +T+
Sbjct: 61  VLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 39/124 (31%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
           P +   +    A+  S        +G+P P++ W R  + +   N   +           
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE------- 54

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
                                           L  SK+  +  G   C AEN  G+V  +
Sbjct: 55  --------------------------------LRFSKLVLEDSGMYQCVAENKHGTVYAS 82

Query: 528 ATLS 531
           A L+
Sbjct: 83  AELT 86

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.9 bits (113), Expect = 8e-08
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 305 TVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLC 364
            V+ D   +      +         V +GKP P V W  DG P+      +  +      
Sbjct: 6   DVITDTEADIGSDLRWS-------CVASGKPRPAVRWLRDGQPLA-----SQNRIEVSGG 53

Query: 365 KLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
           +L  S++  E++G+Y C A N  G   A+A L V+
Sbjct: 54  ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 7e-13
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTE---LHATEHYLITTVESVS 62
           P F+ +IQ V  +  Q A F C   G  +        G +       E  + ++   ++
Sbjct: 2  TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 63 TLEIINPTKEDIGVYTCKATNIGGVAT-CSANLIV 96
          +  ++N TK D G Y C     GGV     A L+V
Sbjct: 61 SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 1e-09
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP-DNGHTMEFNPTTGE 162
             P F + ++ V   A   AT + +  GR       +    ++           +     
Sbjct: 1   RTPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAE-CRANLVLR 198
              ++   T +D   Y        G      A LV++
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 96

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 5e-07
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 2/83 (2%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILP-DNGHTMEFNPTTGE 464
             P F + ++ V   A   AT + +  GR       +    ++           +     
Sbjct: 1   RTPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 465 CVLSISEATPQDEAVYSVKASST 487
              ++   T +D   Y     + 
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTE 82

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 12/102 (11%), Positives = 23/102 (22%), Gaps = 18/102 (17%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
           + V   +             A  + +                            KE+ + 
Sbjct: 11  VEVNAGQFATFQCSAIGRTVAGDRLW-----------------LQGIDVRDAPLKEIKVT 53

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAA-ATLAV 398
                +    +      +AG Y C      G  ++  A L V
Sbjct: 54  SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS------KDIETKDNV 263
             P  +R +Q + V      T +    G      + +  G ++        K   ++  +
Sbjct: 1   RTPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 264 TKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
               +  TTK+  GKY   +  E G    S    + V
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGGVG-ISNYAELVV 95

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 8e-13
 Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 406 EAPKFT-----KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 460
           E PK       +    ++  A +   L   ++G P P++ W +   +            P
Sbjct: 3   EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP 62

Query: 461 TTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENV 520
                                +  +    ++ T  +RS+  +    ++  G  T   +N 
Sbjct: 63  EDTGDS------DEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNP 116

Query: 521 AGSVTCTATLSLL 533
            G      T+ ++
Sbjct: 117 VGEDQVNLTVKVI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 1e-12
 Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 29/117 (24%)

Query: 11  EKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH---------------------- 48
                +V            + G P PT+ WQK  T+ +                      
Sbjct: 14  RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 73

Query: 49  -------ATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
                        + T +  S   +    KED GVYT    N  G    +  + V++
Sbjct: 74  DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-10
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 9/113 (7%)

Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGK---------PTPLVTWSHDGTP 347
           TI V     + +DV +   P  +  W                           W  D   
Sbjct: 18  TIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKL 77

Query: 348 MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
           + E +     + T       +     E+ G+Y+ T  NPVGE     T+ V +
Sbjct: 78  LCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 9e-08
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 37/126 (29%)

Query: 210 EAPTIVRPL-----QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-------- 256
           E P I           ++V   + + L+   +G P P V W K   +             
Sbjct: 3   EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP 62

Query: 257 ------------------------IETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEART 292
                                   +ET  + +   ++   K+  G Y + V N  GE + 
Sbjct: 63  EDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV 122

Query: 293 SGSVTI 298
           + +V +
Sbjct: 123 NLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 6e-07
 Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 32/124 (25%)

Query: 104 EAPKFT-----KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP 158
           E PK       +    ++  A +   L   ++G P P++ W +   +            P
Sbjct: 3   EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP 62

Query: 159 ---------------------------TTGECVLSISEATPQDEAVYSVKAVNTFGRAEC 191
                                      T    + ++  A  +DE VY+V   N  G  + 
Sbjct: 63  EDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV 122

Query: 192 RANL 195
              +
Sbjct: 123 NLTV 126

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 6  APRFIEKI-QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
          AP    K      +   Q     C   G+P+P + W                 + S   L
Sbjct: 4  APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW------RKLDGSQTSKWLSSEPLL 57

Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
           I N   ED G Y C+A NI G  T    +I+
Sbjct: 58 HIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 105 APKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           AP           A      TL+    G P P I W +           +      + E 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK--------LDGSQTSKWLSSEP 55

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
           +L I     +DE  Y  +A N  GR   +  ++
Sbjct: 56  LLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 88

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 211 APTI-VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIK 269
           AP+I  +            VTLE    G P P++KW K      SK      +   L I+
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQ 60

Query: 270 QTTKKTTGKYEIRVVNEAGEARTSGSVTI 298
               +  G YE    N  G     G + I
Sbjct: 61  NVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.9 bits (100), Expect = 6e-06
 Identities = 14/69 (20%), Positives = 19/69 (27%), Gaps = 7/69 (10%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
             G P P + W                +       L I  V  E+ G Y C A N  G  
Sbjct: 29  AFGNPVPQIKWRKLDGSQT-------SKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD 81

Query: 391 VAAATLAVE 399
                + + 
Sbjct: 82  TYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.8 bits (92), Expect = 6e-05
 Identities = 22/126 (17%), Positives = 30/126 (23%), Gaps = 42/126 (33%)

Query: 407 APKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
           AP           A      TL+    G P P I W +           +      + E 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK--------LDGSQTSKWLSSEP 55

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT 525
           +L I     +DE  Y                                  C AEN+ G  T
Sbjct: 56  LLHIQNVDFEDEGTY---------------------------------ECEAENIKGRDT 82

Query: 526 CTATLS 531
               + 
Sbjct: 83  YQGRII 88

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 4e-12
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 9   FIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQ---------KDGTELHATEHYLIT 56
           FIEK Q       +   F  KV+   L   PT+ W          K G  L   E +   
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 57  TVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEKEES 102
           +      ++II       G Y C+ T      +CS +L V E   +
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 108

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 5e-07
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 10/106 (9%)

Query: 108 FTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILPDNGH-------TMEFN 157
           F +  +    +     T  A V        P+I W++GK   L            T E +
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 158 PTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTI 203
                  + I +A       Y  +         C  +L + ++T  
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 108

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 8/107 (7%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
            TV   E +    +V++            +P +   K   +   S  G  ++  +    +
Sbjct: 10  GTVKVGEDITFIAKVKAEDLLR-------KPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEEKEES 404
                  ++ I +     AG Y C           +  L V E   +
Sbjct: 63  SR-VYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 108

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 19/133 (14%), Positives = 33/133 (24%), Gaps = 29/133 (21%)

Query: 410 FTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
           F +  +    +     T  A V        P+I W++GK   L            T E  
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE-- 60

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
                                     +      + I K   +  G+  C         +C
Sbjct: 61  ------------------------RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSC 96

Query: 527 TATLSLLPESEVT 539
           +  L +   +  T
Sbjct: 97  SFDLEVHESTGTT 109

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 215 VRPLQALLVPKDSTVTLEAEYTGTP---TPEVKWFKNGKEIV------------SKDIET 259
           +   Q   V     +T  A+         P +KWFK     +            + +  +
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEAETVMMD 309
           +    ++ I +      G Y   V  +      S  + +  +   T  +D
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 113

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 5e-12
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 13/93 (13%)

Query: 26  FTCKVEGHPLPTMTWQKDGTELHATEHYLI-------TTVESVSTLEIINPTKEDIGVYT 78
               V+G P P++ W  +G+ L+ T                    L +  PT  + G YT
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 79  CKATNIGGVATCSANLIVLEKEESGEAPKFTKP 111
             A N  G A+ S     ++       P    P
Sbjct: 80  LLAANPFGQASASIMAAFMDN------PFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 328 PVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQD------TDGLCKLAISEVFPENAGLYSC 381
           P  V G+P P + W  +G+ + E   +           T     L +++    N G Y+ 
Sbjct: 21  PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL 80

Query: 382 TAVNPVGEAVAAATLAVEEKEESGEAPKFTKP 413
            A NP G+A A+   A  +       P    P
Sbjct: 81  LAANPFGQASASIMAAFMDN------PFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 7e-08
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 16/106 (15%)

Query: 117 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEF-----NPTTGECVLSISEAT 171
           A       +  +V G+P PS+ W      +   +    EF     N T     L +++ T
Sbjct: 12  AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT 71

Query: 172 PQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVLEAPTIVRP 217
             +   Y++ A N FG+A                   ++ P    P
Sbjct: 72  HVNNGNYTLLAANPFGQASASIMA-----------AFMDNPFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 38/134 (28%)

Query: 419 AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEA 478
           A       +  +V G+P PS+ W      +   +    EF                    
Sbjct: 12  AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN-------------- 57

Query: 479 VYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLPESEV 538
                                L +++ T    G+ T  A N  G  + +   +       
Sbjct: 58  --------------ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA------- 96

Query: 539 TDVMESPRFIKTPE 552
              M++P F   PE
Sbjct: 97  --FMDNP-FEFNPE 107

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 10/82 (12%)

Query: 229 VTLEAEYTGTPTPEVKWFKNGKEIVSKDI----------ETKDNVTKLVIKQTTKKTTGK 278
             +     G P P ++W  NG  +                       L + Q T    G 
Sbjct: 18  WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77

Query: 279 YEIRVVNEAGEARTSGSVTITV 300
           Y +   N  G+A  S       
Sbjct: 78  YTLLAANPFGQASASIMAAFMD 99

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 9e-12
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 3  EVLAPRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEH-YLITTVES 60
          E  +  F +K++P     +      T ++       + W K+G E+  +   Y+  ++ +
Sbjct: 2  EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 60

Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
            TL I   +  D   Y C          CS  L V E
Sbjct: 61 KRTLTISQCSLADDAAYQCVVGG----EKCSTELFVKE 94

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 101 ESGEAPKFTKPLKPVI-AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 159
           +  ++  F K L+P           L   +       + W +  +EI   +G    F   
Sbjct: 1   DEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEI-QMSGSKYIFESI 58

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAE 190
             +  L+IS+ +  D+A Y           E
Sbjct: 59  GAKRTLTISQCSLADDAAYQCVVGGEKCSTE 89

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 403 ESGEAPKFTKPLKPVI-AEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT 461
           +  ++  F K L+P           L   +       + W +  +EI   +G    F   
Sbjct: 1   DEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEI-QMSGSKYIFESI 58

Query: 462 TGECVLSISEATPQDEAVYSVKASSTET 489
             +  L+IS+ +  D+A Y       + 
Sbjct: 59  GAKRTLTISQCSLADDAAYQCVVGGEKC 86

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
           V        V W  +G  ++      I++       L IS+    +   Y C      G 
Sbjct: 28  VELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV----GG 83

Query: 390 AVAAATLAVEE 400
              +  L V+E
Sbjct: 84  EKCSTELFVKE 94

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.4 bits (140), Expect = 2e-11
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
            F     P    + + A+  C V     PT+ W+  G ++   +      V S + L+I
Sbjct: 2  LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDV-RFIVLSNNYLQI 60

Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIV 96
              K D G Y C+   +        ++ V
Sbjct: 61 RGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 2/91 (2%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE--IVSKDIETKDNVTKLVIK 269
                        +     +  +   +  P + W   G++  +         +   L I+
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 270 QTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
              K   G Y       A        + + V
Sbjct: 62  GIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 12/90 (13%), Positives = 21/90 (23%), Gaps = 3/90 (3%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
             F     P   +    A +   V     P+I W     +++                 L
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN---NYL 58

Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANL 195
            I      DE  Y  +            ++
Sbjct: 59  QIRGIKKTDEGTYRCEGRILARGEINFKDI 88

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 12/82 (14%), Positives = 19/82 (23%), Gaps = 3/82 (3%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
             F     P   +    A +   V     P+I W     +++                 L
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN---NYL 58

Query: 468 SISEATPQDEAVYSVKASSTET 489
            I      DE  Y  +      
Sbjct: 59  QIRGIKKTDEGTYRCEGRILAR 80

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 12/101 (11%), Positives = 24/101 (23%), Gaps = 21/101 (20%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIY 357
               E E  ++   V S    +  W      V++      +V  ++              
Sbjct: 11  QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ----------- 59

Query: 358 QDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
                     I  +   + G Y C         +    + V
Sbjct: 60  ----------IRGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 4e-11
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL-----HATEHYLITTVES 60
          AP       P   H          V+G+P P + W  +G  L       T+ ++    E 
Sbjct: 4  APTITFLESPTSDHHW---CIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
             L++ NPT  + G YT  A N  G      +   +  
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTT---G 161
           AP  T    P          +  TV G P P++ W+     +        + + T     
Sbjct: 4   APTITFLESPTSDH---HWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTID 204
              L +   T  +   Y++ A N +G+ E + +        ID
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 328 PVVVTGKPTPLVTWSHDGTP----MKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
           P  V G P P + W ++G           ++ +   T+    L +      N G Y+  A
Sbjct: 22  PFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIA 81

Query: 384 VNPVGEAVAAATLAVEEK 401
            N  G+     +      
Sbjct: 82  KNEYGKDEKQISAHFMGW 99

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 11/100 (11%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIV--------SKDIET 259
           V  APTI           D    +     G P P ++WF NG  +               
Sbjct: 1   VHFAPTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
            +    L +   T    G Y +   NE G+     S    
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 19/127 (14%), Positives = 30/127 (23%), Gaps = 33/127 (25%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
           AP  T    P          +  TV G P P++ W+     +        + + T     
Sbjct: 4   APTITFLESPTSDH---HWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE- 59

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
                                            L +   T    GD T  A+N  G    
Sbjct: 60  -----------------------------YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK 90

Query: 527 TATLSLL 533
             +   +
Sbjct: 91  QISAHFM 97

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.6 bits (138), Expect = 5e-11
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 6  APRFIEKIQPVVSHQ---EQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS 62
           P F E+    +  +   E+    TC+   +P  T  W+ +GTEL          + +  
Sbjct: 4  GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY-RLVAGD 62

Query: 63 TLEIINPTKEDIGVYTCKATNIGGVAT-CSANL 94
           +       +D G Y C ATN  G      A+L
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 6/91 (6%)

Query: 105 APKFTKPLKPVIAE---AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 161
            P F +     +     A+   TL       P  +  W     E+               
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-- 61

Query: 162 ECVLSISEATPQDEAVYSVKAVNTFGRAECR 192
             ++  +    +D   Y   A N  G    R
Sbjct: 62  -DLVISNPVKAKDAGSYQCVATNARGTVVSR 91

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 211 APTIVRPLQALLVPKDS---TVTLEAEYTGTPTPEVKWFKNGKEIV--SKDIETKDNVTK 265
            P         L P+ S    VTL       P    +W  NG E+               
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTS 293
           ++      K  G Y+    N  G   + 
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSR 91

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.7 bits (107), Expect = 7e-07
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
                P     W  +GT +K G +         L  +  + V  ++AG Y C A N  G 
Sbjct: 30  RARANPPATYRWKMNGTELKMGPDSRYRLVAGDL--VISNPVKAKDAGSYQCVATNARGT 87

Query: 390 AV-AAATL 396
            V   A+L
Sbjct: 88  VVSREASL 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 16/128 (12%), Positives = 28/128 (21%), Gaps = 40/128 (31%)

Query: 407 APKFTKPLKPVIAE---AQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTG 463
            P F +     +     A+   TL       P  +  W     E+               
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV---- 59

Query: 464 ECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS 523
                                              +++ + +     G   C A N  G+
Sbjct: 60  --------------------------------AGDLVISNPVKAKDAGSYQCVATNARGT 87

Query: 524 VT-CTATL 530
           V    A+L
Sbjct: 88  VVSREASL 95

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 1e-10
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKVEGHPLPT-------MTWQKDGTELHATEHYLITTVE 59
           PR          ++ + A+  CK E  P  T          +       +   + +++ +
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 60  SVSTLEIINPTKEDI-GVYTCKATNIGGVATCSANLIV 96
             S L I N   E   G Y C  T+  G       L V
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 6/99 (6%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSI-----CWYRGKEEILPDNGHTMEFNPTT 160
           P+               A L       P  +            + ++  +      + + 
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 161 GECVLSISEATPQDEA-VYSVKAVNTFGRAECRANLVLR 198
           G   L I     + +   Y     ++ G  +    L +R
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 15/124 (12%), Positives = 25/124 (20%), Gaps = 29/124 (23%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
           P+               A L       P  +   +    +                    
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG----------- 51

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQI-GDVTCRAENVAGSVTC 526
                            S +   + +   RS L I  +  +   G   C   +  GS   
Sbjct: 52  -----------------SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 94

Query: 527 TATL 530
             TL
Sbjct: 95  IITL 98

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 14/108 (12%)

Query: 292 TSGSVTITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEG 351
            +   +  + E ET M+  + ES P  +   +                T S D   M   
Sbjct: 6   KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI-------------TDSEDKALMNGS 52

Query: 352 KEVTIYQDTDGLCKLAISEVF-PENAGLYSCTAVNPVGEAVAAATLAV 398
           +       + G  +L I  +    + G Y C   +  G   A  TL V
Sbjct: 53  ESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 10/98 (10%), Positives = 29/98 (29%), Gaps = 11/98 (11%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSK----------DIETKD 261
           P +     +  + +  T  L  +    P      +    +   K           + +  
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 262 NVTKLVIKQ-TTKKTTGKYEIRVVNEAGEARTSGSVTI 298
             ++L I+    +   G+Y     +  G  +   ++ +
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT----EHYLITTVESVS 62
          PR +   +P +  +         V G+P PT+ W  +G  L  +      Y      S  
Sbjct: 6  PRVVSLEEPELRLEH---CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 62

Query: 63 TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
           L    PT  + G YT  A N  G A  + N   L++
Sbjct: 63 CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 325 HSEPVVVTGKPTPLVTWSHDGTPMKEG---KEVTIYQDTDGLCKLAISEVFPENAGLYSC 381
           H    VV G P P + W H+G P++E          +       L  ++    N G Y+ 
Sbjct: 20  HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL 79

Query: 382 TAVNPVGEAVAAATLAVEEK 401
            A NP+G A         ++
Sbjct: 80  IAKNPLGTANQTINGHFLKE 99

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP--TTGEC 163
           P+     +P +        ++  V G P P++ W    + +       +E+       E 
Sbjct: 6   PRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 62

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
            L  ++ T  +   Y++ A N  G A    N 
Sbjct: 63  CLLFNKPTHYNNGNYTLIAKNPLGTANQTING 94

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 34/126 (26%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 467
           P+     +P +        ++  V G P P++ W    + +       +E+         
Sbjct: 6   PRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY--------- 53

Query: 468 SISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT 527
                                     + +   LL +K T    G+ T  A+N  G+   T
Sbjct: 54  ----------------------YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT 91

Query: 528 ATLSLL 533
                L
Sbjct: 92  INGHFL 97

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 10/100 (10%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS-------KDIETK 260
           V   P +V   +  L        +E    G P P + W  NG+ +            E +
Sbjct: 2   VYYPPRVVSLEEPELR---LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 58

Query: 261 DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
            +   L+  + T    G Y +   N  G A  + +     
Sbjct: 59  ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 98

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 5  LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLIT--TVESVS 62
            P+++ K   +++      +  C    +P+    + K+G +++      IT     S  
Sbjct: 4  PVPQYVSK--DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 61

Query: 63 TLEIINPTKEDIGVYTCKATNIGGVA-TCSANLIVL 97
           L       ED GVYTC+  N  G     S  L V+
Sbjct: 62 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 105 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
            P++    K ++A+A     +       P     +++  +++  +    +  +  T    
Sbjct: 5   VPQYVS--KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRA 193
           L      P+DE VY+ +  N  G+ +  +
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHS 91

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
            P++    K ++A+A     +       P     +++  +++  +    +  +  T    
Sbjct: 5   VPQYVS--KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 467 LSISEATPQDEAVYSVKAS 485
           L      P+DE VY+ +  
Sbjct: 63  LLFKTTLPEDEGVYTCEVD 81

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 211 APTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTK 265
            P  V   + ++        +   Y   P     +FKNGK++            + +  +
Sbjct: 5   VPQYVS--KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 266 LVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           L+ K T  +  G Y   V N  G+ +   S+ +TV
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQ-KHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVT-IYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
           +    P     +  +G  +    E      +     +L      PE+ G+Y+C   N VG
Sbjct: 26  MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG 85

Query: 389 EAVA-AATLAV 398
           +    +  L V
Sbjct: 86  KPQKHSLKLTV 96

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 4e-10
 Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 4   VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQ-------KDGTELHATEHYLIT 56
           V  P  I   Q   +   +     C +   P P            + GT    T   + T
Sbjct: 4   VNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST 63

Query: 57  TVESVSTLEIINPTKE-DIGVYTCKATNIGGVATCSANLIVLEKEESG 103
               +STL I N  +     +Y C A N  G  T    L     E SG
Sbjct: 64  EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 111

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 20/110 (18%), Positives = 32/110 (29%), Gaps = 14/110 (12%)

Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
           T      E   +   + S P      +   E V+ +G        +              
Sbjct: 15  TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI------------- 61

Query: 357 YQDTDGLCKLAISEVFPE-NAGLYSCTAVNPVGEAVAAATLAVEEKEESG 405
             +   +  L IS +       +Y+CTA N  G       L  +  E SG
Sbjct: 62  STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 111

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 6/98 (6%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTM-----EFNP 158
             P      +   A       +K  +   P P    +  KE +L                
Sbjct: 5   NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 159 TTGECVLSISEATP-QDEAVYSVKAVNTFGRAECRANL 195
                 L+IS       + +Y+  A N+FG       L
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 102

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 23/127 (18%), Positives = 30/127 (23%), Gaps = 29/127 (22%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
             P      +   A       +K  +   P P    +  KE +L           T    
Sbjct: 5   NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI--- 61

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDV-TCRAENVAGSV 524
                                       +G  S L IS I R     +  C A N  GS 
Sbjct: 62  -------------------------STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD 96

Query: 525 TCTATLS 531
           T    L 
Sbjct: 97  TEIIRLK 103

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 8  RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEII 67
             + +  V     + A F  ++   P     W+  G  L A+    I        L + 
Sbjct: 3  EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILH 61

Query: 68 NPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
          N      G  + +A N    A  +ANL V E
Sbjct: 62 NCQLGMTGEVSFQAAN----AKSAANLKVKE 88

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 3/84 (3%)

Query: 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 166
           +  KPL  V       A  +  +   P     W    + +       +  +      +L 
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKK--HILI 59

Query: 167 ISEATPQDEAVYSVKAVNTFGRAE 190
           +           S +A N    A 
Sbjct: 60  LHNCQLGMTGEVSFQAANAKSAAN 83

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 3/81 (3%)

Query: 409 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 468
           +  KPL  V       A  +  +   P     W    + +       +  +      +L 
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKK--HILI 59

Query: 469 ISEATPQDEAVYSVKASSTET 489
           +           S +A++ ++
Sbjct: 60  LHNCQLGMTGEVSFQAANAKS 80

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 214 IVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD---IETKDNVTKLVIKQ 270
           + +PL  + V    T   E E    P    +W   G+ + +     I        L++  
Sbjct: 4   VEKPLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 271 TTKKTTGKYEIRVVNEAGEAR 291
                TG+   +  N    A 
Sbjct: 63  CQLGMTGEVSFQAANAKSAAN 83

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 1e-09
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 22 QPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVSTLEIINPTKEDIGVYTC 79
          QP    C VEG   P + W KDG  +   +  +  ++    +  L + +  + D G Y C
Sbjct: 12 QPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWC 71

Query: 80 KATNIGGVA-TCSANLIV 96
          +  + G    +    L V
Sbjct: 72 QVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 11/78 (14%), Positives = 22/78 (28%)

Query: 115 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 174
           +      P  L  +V G   P I W +    +   +   +  +       LS+      D
Sbjct: 6   LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 65

Query: 175 EAVYSVKAVNTFGRAECR 192
              Y  +  +       +
Sbjct: 66  AGRYWCQVEDGGETEISQ 83

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 4e-07
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 223 VPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLVIKQTTKKTTG 277
           V +   V L     G   P+++W K+G  + + D     +  +  +  L +K   +   G
Sbjct: 8   VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAG 67

Query: 278 KYEIRVVNEAGEARTSGSVTITVA 301
           +Y  +V +       S  V +TV 
Sbjct: 68  RYWCQVEDGGETE-ISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVT-IYQDTDGLCKLA 367
            + V                  V G   P + W  DG  ++   ++     +   +  L+
Sbjct: 5   KLTVSQGQPVKLN-------CSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 57

Query: 368 ISEVFPENAGLYSCTAVNPVGEAVAA-ATLAVE 399
           +  V   +AG Y C   +     ++    L VE
Sbjct: 58  LKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 11/69 (15%), Positives = 20/69 (28%)

Query: 417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQD 476
           +      P  L  +V G   P I W +    +   +   +  +       LS+      D
Sbjct: 6   LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 65

Query: 477 EAVYSVKAS 485
              Y  +  
Sbjct: 66  AGRYWCQVE 74

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 9  FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVSTLEI 66
            ++++   ++  +     C+V       + W K+G E+       Y I        L I
Sbjct: 3  VTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIVLEK 99
             TK D   Y+   T        SA L V  K
Sbjct: 62 EGATKADAAEYSVMTTG----GQSSAKLSVDLK 90

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 2e-09
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 107 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 166
             TK L+   A       L+  V+     ++ W++  EEI+P             + +L 
Sbjct: 2   MVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 167 ISEATPQDEAVYSVKAVNTFGRAE 190
           I  AT  D A YSV        A+
Sbjct: 61  IEGATKADAAEYSVMTTGGQSSAK 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 409 KFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 468
             TK L+   A       L+  V+     ++ W++  EEI+P             + +L 
Sbjct: 2   MVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 469 ISEATPQDEAVYSVKASSTETK 490
           I  AT  D A YSV  +  ++ 
Sbjct: 61  IEGATKADAAEYSVMTTGGQSS 82

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 213 TIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD-----IETKDNVTKLV 267
            + + L+         V LE E +      VKWFKNG+EI+        I  +     L+
Sbjct: 2   MVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 268 IKQTTKKTTGKYEIRVVNEAGEAR 291
           I+  TK    +Y +        A+
Sbjct: 61  IEGATKADAAEYSVMTTGGQSSAK 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 5/73 (6%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEG-KEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVG 388
               +    V W  +G  +  G K     +       L I      +A  YS        
Sbjct: 22  CEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQS 81

Query: 389 EAVAAATLAVEEK 401
                A L+V+ K
Sbjct: 82  S----AKLSVDLK 90

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 9  FIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEII 67
           +E+ +           F C  +   P  T+ W +       +       ++    L I 
Sbjct: 5  TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-----MDFNGILTIR 59

Query: 68 NPTKEDIGVYTCKATNIGGVATCSANLIV 96
          N    D G Y C  +N+  +   +A L V
Sbjct: 60 NVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 6/76 (7%)

Query: 324 IHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTA 383
           +       +  P   + W+         + +           L I  V P +AG Y CT 
Sbjct: 20  VTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG------ILTIRNVQPSDAGTYVCTG 73

Query: 384 VNPVGEAVAAATLAVE 399
            N        ATL V+
Sbjct: 74  SNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 214 IVRPLQALLVPKDSTVTLEAE-YTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTT 272
            V   ++  V   + VT      + +P   + W +     +       + +  L I+   
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--LTIRNVQ 62

Query: 273 KKTTGKYEIRVVNEAGEARTSGSVTI 298
               G Y     N     + + ++ +
Sbjct: 63  PSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 108 FTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLS 166
             +  +       +  T   T  +  P  ++ W R     LP               +L+
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN-------GILT 57

Query: 167 ISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
           I    P D   Y     N F   +  A L ++
Sbjct: 58  IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 9/36 (25%), Positives = 12/36 (33%)

Query: 496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS 531
              +L I  +     G   C   N+      TATL 
Sbjct: 52  FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 17/87 (19%), Positives = 32/87 (36%)

Query: 6  APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
           P   ++   V+  +  P +  C +EG+        K   + +  + +     +   +L 
Sbjct: 2  YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 66 IINPTKEDIGVYTCKATNIGGVATCSA 92
           + P   D G Y C A    GVA+   
Sbjct: 62 FLRPQASDEGHYQCFAETPAGVASSRV 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 3/96 (3%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 163
           + P        V+    +P  L+  + G        ++   +      H           
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE--G 58

Query: 164 VLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRK 199
            L        DE  Y   A    G A  R  +  RK
Sbjct: 59  SLVFLRPQASDEGHYQCFAETPAGVASSRV-ISFRK 93

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS---KDIETKDNVTKL 266
           + P +      +L  +++   LE    G        +K   +  +    +   + +   L
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           V  +      G Y+      AG A +S  ++   
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGVA-SSRVISFRK 93

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 2/88 (2%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGEC 465
           + P        V+    +P  L+  + G        ++   +      H           
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE--G 58

Query: 466 VLSISEATPQDEAVYSVKASSTETKIMT 493
            L        DE  Y   A +      +
Sbjct: 59  SLVFLRPQASDEGHYQCFAETPAGVASS 86

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 2e-09
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 16  VVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDI 74
           +VS   +  +  C +       T+TW KD ++   +        +    L  +    ED 
Sbjct: 12  LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 71

Query: 75  GVYTCKATNIGGVATCSANLIVLEKE 100
           G Y C   N         +   +E E
Sbjct: 72  GHYYCVVRNSSYCLRIKISAKFVENE 97

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 1/73 (1%)

Query: 330 VVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGE 389
           +   +    +TW  D +      E           KL       E++G Y C   N    
Sbjct: 26  LNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK-EKLWFVPAKVEDSGHYYCVVRNSSYC 84

Query: 390 AVAAATLAVEEKE 402
                +    E E
Sbjct: 85  LRIKISAKFVENE 97

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 9/99 (9%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESV---- 61
           P       P        A+ TC   +G P    +W KDG  +   +        +     
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 62  ----STLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
                 L     T  D G Y C+A N  G A  S    +
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKD-----------IET 259
           P+         V   +   L      G+P  E  WFK+G  +++ D              
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 260 KDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
                 L+    T   +G+Y  +  N  G A  S +  +   E
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 105

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 7/83 (8%)

Query: 327 EPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLA-------ISEVFPENAGLY 379
                 G P    +W  DG  M            +    +           V   ++G Y
Sbjct: 23  TCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEY 82

Query: 380 SCTAVNPVGEAVAAATLAVEEKE 402
            C A N  G A+ +    ++  E
Sbjct: 83  YCQAQNGYGTAMRSEAAHMDAVE 105

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 32/135 (23%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
           P       P      + A L  +   G P     W++    +L  +              
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTR--------- 53

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
                             +   +    D     L+   +T    G+  C+A+N  G+   
Sbjct: 54  ------------------AFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR 95

Query: 527 TATLSLLPESEVTDV 541
           +    +    +  ++
Sbjct: 96  SEAAHM----DAVEL 106

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 4e-09
 Identities = 15/104 (14%), Positives = 25/104 (24%), Gaps = 14/104 (13%)

Query: 7   PRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTEL------------HATEHY 53
           P  +      +           C V G       W+ +G+ +                  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 54  LITTVESVSTLEIINPTKEDIGV-YTCKATNIGGVATCSANLIV 96
                  ++ L I           +TC A N  G+      LI 
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 22/125 (17%), Positives = 32/125 (25%), Gaps = 25/125 (20%)

Query: 408 PKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
           P    P  + +  +  S   L   VTG+ +    W      I  D+    E   +     
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP- 60

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIG-DVTCRAENVAGSVT 525
                                          +VL IS+I         TC A+N  G   
Sbjct: 61  ----------------------ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA 98

Query: 526 CTATL 530
               L
Sbjct: 99  AYIQL 103

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 17/106 (16%)

Query: 212 PTIVRPL-QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS---------------K 255
           P IV P  + + V   S + L    TG  +    W  NG  I                  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 256 DIETKDNVTKLVIKQTTKKTTG-KYEIRVVNEAGEARTSGSVTITV 300
           +      +T L I +   +     +     N  G       +   V
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 107

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 8e-05
 Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 9/101 (8%)

Query: 297 TITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTI 356
           T+ V     + +   V    +    W  +                   G      +    
Sbjct: 11  TMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV--------IDEDDPVLGEDYYSVENPAN 62

Query: 357 YQDTDGLCKLAISEVFPENAG-LYSCTAVNPVGEAVAAATL 396
            + +  +  L ISE+        ++C A N  G   A   L
Sbjct: 63  KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 7e-09
 Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 7   PRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVES----- 60
           P       P  +     A+ TC   +G P    TW KDG  +            S     
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 61  --VSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
                L     +  D G Y+C+A N  G    S  + +
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 164
           P       P  A   + A L  +   G P     W++    +  +   T  F+ ++    
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 165 L-----SISEATPQDEAVYSVKAVNTFGRAECRANLVLR 198
                      +  D   YS +A N +G       + + 
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 329 VVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLA------ISEVFPENAGLYSCT 382
               G P    TW  DG  M    + T                     +   + G YSC 
Sbjct: 25  SEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE 84

Query: 383 AVNPVGEAVAAATLAVEEKE 402
           A N  G  + +  + +E  E
Sbjct: 85  ARNGYGTPMTSNAVRMEAVE 104

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 11/102 (10%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKD----------IETK 260
           P+             +   L      G+P  E  WFK+G  + +                
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 261 DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAE 302
               +LV    +   TG+Y     N  G   TS +V +   E
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 16/126 (12%), Positives = 35/126 (27%), Gaps = 29/126 (23%)

Query: 408 PKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECV 466
           P       P  A   + A L  +   G P     W++    +  +   T  F+       
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS------- 55

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
                                 +  + +     L+   ++    G+ +C A N  G+   
Sbjct: 56  ---------------------NSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT 94

Query: 527 TATLSL 532
           +  + +
Sbjct: 95  SNAVRM 100

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 7e-09
 Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 7/100 (7%)

Query: 6   APRFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKDGTEL-----HATEHYLITTVE 59
              +I++          P    C V+     P +TW K               +      
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 60  SVSTLEIINPTKEDIGVYTCKATNIGG-VATCSANLIVLE 98
           S   L        D G Y C A      + + S  L V +
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD 102

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 12/94 (12%), Positives = 18/94 (19%), Gaps = 4/94 (4%)

Query: 104 EAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGE 162
           +   + K        A  P  L+  V      P + W +                     
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 163 CVLS---ISEATPQDEAVYSVKAVNTFGRAECRA 193
                       P D   Y   A       E  +
Sbjct: 62  ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHS 95

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 17/138 (12%), Positives = 28/138 (20%), Gaps = 38/138 (27%)

Query: 406 EAPKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGE 464
           +   + K        A  P  L+  V      P + W +                     
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 465 CVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV 524
               I                                   +  +  G   C A   +  +
Sbjct: 62  ISFFILH------------------------------FEPVLPNDNGSYRCSANFQSNLI 91

Query: 525 -TCTATLSLLPESEVTDV 541
            + + TL       VTDV
Sbjct: 92  ESHSTTLY------VTDV 103

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 15/95 (15%)

Query: 6  APRFIEKIQP--VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
           PR  E+  P      +       C+  G+PLP +   KDGT                  
Sbjct: 2  GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------- 50

Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
             +  T++  G Y C+A +  G  T    + VL 
Sbjct: 51 --SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 17/93 (18%)

Query: 105 APKFTKPLKP--VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGE 162
            P+  +   P        S  T      G P P +   +               + T   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK---------------DGTFPL 46

Query: 163 CVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
            +      T   E  Y  +A +T G       +
Sbjct: 47  PIGESVTVTRDLEGTYLCRARSTQGEVTREVTV 79

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 12/92 (13%)

Query: 211 APTIVRPL--QALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVI 268
            P +           P++S  T   +  G P PE+K  K+              +     
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD----------GTFPLPIGES 51

Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
              T+   G Y  R  +  GE     +V +  
Sbjct: 52  VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKN-----------GKEIVSKDIETK 260
            ++      + VP++ ++ L   Y+G  +P V+W               +          
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 261 DNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
            + + +     T+K  G+Y   V  E G+     S+ +TV
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 11/99 (11%)

Query: 10  IEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGT--------ELHATEHYLITTVES 60
           +   Q  V   E +    TC   G   P + W+                T  Y      S
Sbjct: 4   VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS 63

Query: 61  VSTLEIINPTKEDIGVYTCKATNIGGVATCSA--NLIVL 97
            S +   + T++D G YTC  +  GG        +L VL
Sbjct: 64  SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 10/91 (10%), Positives = 25/91 (27%)

Query: 309 DVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAI 368
           DV+V  + +                      + +       +       + T     +  
Sbjct: 10  DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITF 69

Query: 369 SEVFPENAGLYSCTAVNPVGEAVAAATLAVE 399
           S V  ++ G Y+C      G+     ++ + 
Sbjct: 70  SSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 6/98 (6%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNP------T 159
                    V         L  T +G  +P + W   +        +  +         T
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 160 TGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVL 197
                ++ S  T +D   Y+       G+     ++ L
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 23  PALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT 82
           P +   K E + LP + W KD   L     +          L ++N  ++  G YTC A+
Sbjct: 22  PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG---VKDRLIVMNVAEKHRGNYTCHAS 78

Query: 83  NIGGVATCSA----NLIVLEKE 100
                           I LE+ 
Sbjct: 79  YTYLGKQYPITRVIEFITLEEN 100

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 10/64 (15%), Positives = 24/64 (37%)

Query: 237 GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSV 296
               P+++W+K+ K ++  +I       +L++    +K  G Y           +   + 
Sbjct: 31  NNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITR 90

Query: 297 TITV 300
            I  
Sbjct: 91  VIEF 94

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 4/69 (5%)

Query: 331 VTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEA 390
                 P + W  D  P+                +L +  V  ++ G Y+C A       
Sbjct: 29  NENNELPKLQWYKDCKPLLLDNIHFSGVKD----RLIVMNVAEKHRGNYTCHASYTYLGK 84

Query: 391 VAAATLAVE 399
               T  +E
Sbjct: 85  QYPITRVIE 93

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 122 PATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK 181
           P            P + WY+  + +L DN H            L +     +    Y+  
Sbjct: 22  PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR-----LIVMNVAEKHRGNYTCH 76

Query: 182 AVNTFGRAECRANLVLRKATTIDKPR 207
           A  T+   +     V+ +  T+++ +
Sbjct: 77  ASYTYLGKQYPITRVI-EFITLEENK 101

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 7e-07
 Identities = 21/90 (23%), Positives = 26/90 (28%), Gaps = 1/90 (1%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEI 66
          P    ++           L  C+VEG  L    W     E  AT            TL  
Sbjct: 3  PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 67 INPTKEDIGVYTCKATNIGGVATCSANLIV 96
          +          TC A N  G A  S  + V
Sbjct: 63 VTSDLNRK-NVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 2/90 (2%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS--KDIETKDNVTKLVIK 269
           PT+   +    V     V L  +  G    +  W     E  +         ++   +  
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 270 QTTKKTTGKYEIRVVNEAGEARTSGSVTIT 299
            T+            N+ G A  S  V ++
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 3/90 (3%)

Query: 106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVL 165
           P     +     +      L+  V GR      W   + E       +            
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 166 SISEATPQDEAVYSVKAVNTFGRAECRANL 195
             S+   +     +  A N  GRAE    +
Sbjct: 63  VTSDLNRK---NVTCWAENDVGRAEVSVQV 89

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQ 270
           P      + L VP ++   L  E         + W++   +I              V+  
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPS------VLNV 55

Query: 271 TTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           T    +  +     N  G A +S + T+ +
Sbjct: 56  TGVTQSTMFSCEAHNLKGLA-SSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLE 65
          P F  + + +      P   +C+        T+ W +  T++                  
Sbjct: 2  PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV--------- 52

Query: 66 IINPTKEDIGVYTCKATNIGGVAT-CSANLIV 96
          +         +++C+A N+ G+A+  +A + +
Sbjct: 53 LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 5e-06
 Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 6/91 (6%)

Query: 7  PRFIE-KIQPVVSHQEQPALFTCKVEG---HPLPTMTWQKDGTELHATEHYLIT--TVES 60
          PR +   +QP +    +     C+V         T+   +    LH            E+
Sbjct: 2  PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 61 VSTLEIINPTKEDIGVYTCKATNIGGVATCS 91
           +T       ++    ++C A         +
Sbjct: 62 TATFNSTADREDGHRNFSCLAVLDLMSRGGN 92

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 5  LAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVST 63
          L     E+  PV   +    +FTC     +P  +  W  +               ++   
Sbjct: 3  LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62

Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSA 92
          L I      D+G Y+C AT+     T S 
Sbjct: 63 LYIAKTEASDLGNYSCFATSHIDFITKSV 91

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (100), Expect = 8e-06
 Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 3/106 (2%)

Query: 298 ITVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGK---EV 354
           I     +   +  R+     A+                        D     E +   E+
Sbjct: 12  IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTEL 71

Query: 355 TIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAVEE 400
                 +G   L I  V   + G Y+C   +   +  AA  L VE+
Sbjct: 72  LKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 117

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 17/108 (15%), Positives = 25/108 (23%), Gaps = 23/108 (21%)

Query: 14  QPVVSHQEQPALFTCKVEGHPLPTMTWQKD-----------------------GTELHAT 50
            P+ +     A   C++      T                                   T
Sbjct: 10  HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRT 69

Query: 51  EHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
           E    +  E    L I N    D G YTC   +       +  L V +
Sbjct: 70  ELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 117

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 15/130 (11%), Positives = 30/130 (23%), Gaps = 32/130 (24%)

Query: 111 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-------------------- 150
           P  P+ A     A L   ++     +                                  
Sbjct: 8   PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRG 67

Query: 151 -GHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANLVLRKATTIDKPRVL 209
               ++ +   G+  L I      DE  Y+    +   + E    L           +V 
Sbjct: 68  RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL-----------KVE 116

Query: 210 EAPTIVRPLQ 219
           +    + P +
Sbjct: 117 DPFYWINPGR 126

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 15/140 (10%), Positives = 27/140 (19%), Gaps = 21/140 (15%)

Query: 413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA 472
           P  P+ A     A L   ++     +               H                  
Sbjct: 8   PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAP---- 63

Query: 473 TPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL 532
                     +  +   K      +  L I  +     G  TC   + +        L  
Sbjct: 64  --------EYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK- 114

Query: 533 LPESEVTDVMESPRFIKTPE 552
                   V +   +I    
Sbjct: 115 --------VEDPFYWINPGR 126

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 5   LAPRFIEKIQPVVSHQE-QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVS- 62
           +    +   +P V   E  P   +C   G   P + W+ D  +      Y      S   
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 63  -------TLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
                   +   + T+ED G YTC  +  GG +     + ++
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 11/103 (10%)

Query: 209 LEAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFK-----------NGKEIVSKDI 257
           + + T+      + +P+++ V L   Y+G  +P V+W             N K   S + 
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 258 ETKDNVTKLVIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
                 T +  K  T++ TG Y   V  E G +     V + V
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV 104

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 19/112 (16%)

Query: 294 GSVTI-------TVAEAETVMMDVRVESHPTASFQWFIHSEPVVVTGKPTPLVTWSHDGT 346
           GSVT+        + E   V +        +   +W                +T S++  
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 347 PMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
                  +T    T             E+ G Y+C      G +     + +
Sbjct: 63  VTFLPTGITFKSVT------------REDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 11/95 (11%), Positives = 20/95 (21%), Gaps = 6/95 (6%)

Query: 7  PRFIEKIQPVVSHQEQPALFTCKVEG---HPLPTMTWQKDGTELHATEHYLITTVESVST 63
           R      P      +     C+VEG       T+   +   EL               T
Sbjct: 5  ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAE---VT 61

Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLIVLE 98
            ++         ++C+                  
Sbjct: 62 TTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSA 96

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 10/98 (10%), Positives = 22/98 (22%), Gaps = 9/98 (9%)

Query: 212 PTIVRPLQALLVPKDSTVTLEAEYTGT---PTPEVKWFKNGKEIVSKDIETKDNVTKLVI 268
             +         P    +TL  +  G        V   +  KE+  +    +       +
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64

Query: 269 KQTTKKTTGKYEIRVVNEAGEA------RTSGSVTITV 300
                    ++  R   +           TS    +  
Sbjct: 65  LVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQT 102

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 5e-05
 Identities = 14/97 (14%), Positives = 24/97 (24%), Gaps = 7/97 (7%)

Query: 1  MAEVLAPRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVE 59
          +A    P        + S        TC         T+ W        +          
Sbjct: 1  LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG--- 57

Query: 60 SVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
              L + +    D G Y+C           + +L+V
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRAG---RPAGTVHLLV 91

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 6/92 (6%)

Query: 210 EAPTIVRPLQALLVPKDSTVTLEAEYT-GTPTPEVKWFKNGKEIVSKDIETKDNVTKLVI 268
             P        L      +VTL            V W        S          +L++
Sbjct: 5   RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL 64

Query: 269 KQTTKKTTGKYEIRVVNEAGEARTSGSVTITV 300
           +      +G Y           R +G+V + V
Sbjct: 65  RSVQLHDSGNYSCYRAG-----RPAGTVHLLV 91

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-05
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 7  PRFIEKIQPVVSHQE-QPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTL 64
          P  +E  +PVV+         TC++       ++ W+        T    + +    S L
Sbjct: 3  PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG-----LDTSLGAVQSDTGRSVL 57

Query: 65 EIINPTKEDIGVYTCKATNIGGVATCSANLIV 96
           + N +    G   C  +  G     +  L+V
Sbjct: 58 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 9e-05
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 11/92 (11%)

Query: 14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESV----------ST 63
          Q +         F       PL  + W+K   ++   E+       S            +
Sbjct: 3  QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 64 LEIINPTKEDIGVYTCKATNIGGVATCSANLI 95
          L I N T  D   Y  ++ NI         ++
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTMKFFLYVL 93

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 113 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPT--------TGECV 164
           + +        T        P   + W + K+++            +        T    
Sbjct: 3   QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 165 LSISEATPQDEAVYSVKAVNTFGRAECRANLV 196
           L+I   T  DE  Y +++ N     +    ++
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITDTMKFFLYVL 93

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 14/97 (14%)

Query: 208 VLEAPTIVRPLQALLVPKDSTVTLEAEYTG-TPTPEVKWFKNGKEIVSKDIETKDNVTKL 266
           +L+AP  V         ++  + L       T   +V + +N      KD +   + +  
Sbjct: 6   LLQAPRWV-------FKEEDPIHLRCHSWKNTALHKVTYLQN-----GKDRKYFHHNSDF 53

Query: 267 VIKQTTKKTTGKYEIRVVNEAGEARTSGSVTITVAEA 303
            I + T K +G Y  R +  +    +S +V IT+ +A
Sbjct: 54  HIPKATLKDSGSYFCRGLVGSKNV-SSETVNITITQA 89

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 13/84 (15%), Positives = 25/84 (29%)

Query: 215 VRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKK 274
             P    L     +V+L    TG  +P   W       ++  +  +   + L +   +  
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64

Query: 275 TTGKYEIRVVNEAGEARTSGSVTI 298
               Y      E+ +      V I
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEI 88

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 22  QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA 81
             A   C  + +        ++G     +  Y +   +    L I N ++ D GVY C +
Sbjct: 13  GTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRK---NLLIFNLSEGDSGVYQCLS 69

Query: 82  TNIGGVATCSANLIVLEKE 100
                  T    +     E
Sbjct: 70  EERVKNKTVFQVVAKHVLE 88

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 11/78 (14%), Positives = 21/78 (26%)

Query: 321 QWFIHSEPVVVTGKPTPLVTWSHDGTPMKEGKEVTIYQDTDGLCKLAISEVFPENAGLYS 380
            +F H     +       +            K  +      G   L I  +   ++G+Y 
Sbjct: 7   HFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQ 66

Query: 381 CTAVNPVGEAVAAATLAV 398
           C +   V        +A 
Sbjct: 67  CLSEERVKNKTVFQVVAK 84

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 15/127 (11%)

Query: 411 TKPLKPVIAEAQSPATLKATVTGRPTPS----ICWYRGKEEILPDNGHTMEFNPTTGECV 466
           T P + +       A L    T  P       I W     +           N    + +
Sbjct: 8   TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPAD-----------NQKVDQVI 56

Query: 467 LSISEATPQDEAVYSVKASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC 526
           +  S     D+    +K     T        + + ++ +    IG   C+ +   G    
Sbjct: 57  ILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK 116

Query: 527 TATLSLL 533
              L +L
Sbjct: 117 KIHLVVL 123

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 59  ESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL 97
              +++ + N    DIG Y CK     GVA    +L+VL
Sbjct: 85  SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 8/115 (6%)

Query: 292 TSGSVTITVAEAETVMMDVRVESHPTAS----FQWFIHSEPVVVTGKPTPLVTWSHDGTP 347
           T+    I  A+ ET  +  +    P        +W I         +   L +       
Sbjct: 8   TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 67

Query: 348 MKEGKEVTIYQDTDGLCK----LAISEVFPENAGLYSCTAVNPVGEAVAAATLAV 398
                +  ++  ++ L      + ++ +   + G Y C      G A     L V
Sbjct: 68  YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 17/113 (15%), Positives = 28/113 (24%), Gaps = 26/113 (23%)

Query: 109 TKPLKPVIAEAQSPATLKATVTGRPTPS----ICWYR----------------------G 142
           T P + +       A L    T  P       I W                         
Sbjct: 8   TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 67

Query: 143 KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFGRAECRANL 195
               L    H    +  +G+  ++++     D   Y  K     G A  + +L
Sbjct: 68  YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 120

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 11/88 (12%)

Query: 22 QPALFTCK--VEGHPLPTMTWQKDGTELHATEHYLIT-------TVESVSTLEIINPTKE 72
                         +  + W++  T +   +  +          + +   L+I N T++
Sbjct: 11 HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD 70

Query: 73 DIGVYTCKATNIGGVATCSA--NLIVLE 98
          D G Y     +  G    +   +L +LE
Sbjct: 71 DSGTYNVTVYSTNGTRILNKALDLRILE 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	579
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.77
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.77
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.76
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.76
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.75
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.74
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.74
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.71
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.69
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.68
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.68
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.68
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.67
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.66
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.66
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.64
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.64
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.62
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.62
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.62
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.62
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.62
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.61
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.61
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.61
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.6
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.59
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.59
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.59
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.59
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.58
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.58
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.58
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.58
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.58
d2avga1	110	Cardiac myosin binding protein C, different domain	99.57
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.57
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.57
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.57
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.57
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.57
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.56
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.56
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.56
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.56
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.56
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.56
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.56
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.56
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.55
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.55
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.55
d2avga1	110	Cardiac myosin binding protein C, different domain	99.55
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.54
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.54
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.54
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.54
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.54
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.53
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.53
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.52
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.52
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.52
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.51
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.51
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.5
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.5
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.5
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.5
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.49
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.49
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.49
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.49
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.47
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.46
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.45
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.45
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.45
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.45
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.45
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.44
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.43
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.43
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.42
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.4
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.4
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.39
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.39
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.39
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.39
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.38
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.38
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.37
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.36
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.35
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.33
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.33
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.32
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.28
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.28
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.27
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.24
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.22
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.2
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.11
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.09
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.09
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.08
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.08
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	99.0
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.96
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.93
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.93
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.92
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.91
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.9
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.89
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.89
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.89
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.88
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.87
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.87
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.86
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.86
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.86
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.85
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.85
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.85
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.84
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.84
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.84
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.83
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.82
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.82
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.82
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.82
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.81
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.8
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.79
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.79
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.78
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.78
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.78
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.77
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.77
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.76
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.76
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.75
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.74
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.74
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.72
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.72
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.72
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.71
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.71
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.7
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.7
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.7
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.68
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.68
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.67
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.66
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.66
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.65
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.65
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.65
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.64
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.63
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.62
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.62
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.61
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.6
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.59
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.58
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.56
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.54
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.54
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.54
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.53
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.53
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.52
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.51
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.51
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.51
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.5
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.48
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.48
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.48
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.47
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.47
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.47
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.46
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.46
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.46
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.45
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.45
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.45
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.44
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.44
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.43
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.43
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.42
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.42
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.41
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.4
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.39
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.39
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.39
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.38
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.38
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.38
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.38
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.37
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.37
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.37
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.37
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.37
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.37
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.36
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.36
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.35
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.35
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.34
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.34
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.34
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.33
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.33
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.33
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.32
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.32
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.31
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.3
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.3
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.29
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.29
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.28
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.28
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.28
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.27
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.27
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.27
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.27
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.26
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.26
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.26
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.25
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.25
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.25
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.24
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.24
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.24
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.23
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.23
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.22
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.22
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.22
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.22
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.22
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.22
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.21
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.21
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.21
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.2
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.2
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.2
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.2
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.2
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.2
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.2
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.2
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.19
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.19
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.19
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.19
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.18
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.18
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.18
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.18
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.17
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.17
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	98.17
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.17
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.16
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.16
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.15
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.15
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.15
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.15
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.15
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.14
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.14
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.13
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.11
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.1
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	98.1
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.1
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	98.1
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.1
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.09
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.09
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.08
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.08
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.08
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.08
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.08
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.08
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.08
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.07
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.07
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	98.07
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.07
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	98.07
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.06
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	98.05
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.05
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.04
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.04
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.04
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.04
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.04
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	98.04
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.03
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.03
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	98.03
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.02
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.02
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.02
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.02
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	98.02
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.01
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.0
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	98.0
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.0
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.99
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.99
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.99
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.99
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.98
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.98
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.97
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.97
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.97
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.97
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.97
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.96
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.96
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.96
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.95
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.95
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.95
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.92
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.92
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.92
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.92
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.92
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.91
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.91
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.91
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.9
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.89
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.89
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.89
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.88
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.88
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.86
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.86
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.86
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.85
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.85
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.84
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.84
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.84
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.83
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.83
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.83
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.81
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.81
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.81
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.81
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.8
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.8
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.8
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.8
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.79
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.79
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.78
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.77
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.77
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.77
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.77
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.77
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.76
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.76
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.76
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.75
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.74
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.74
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.73
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.72
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.7
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.7
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.69
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.69
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.68
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.67
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.67
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.67
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.67
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.65
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.65
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.64
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.64
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.64
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.64
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.64
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.63
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.63
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.63
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.63
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.62
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.62
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.62
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.61
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.59
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.58
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.58
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.58
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.58
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.57
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.57
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.57
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.57
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.56
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.56
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.55
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.55
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.54
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.54
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.54
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.53
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.53
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.52
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.52
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.51
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.51
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.51
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.51
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.51
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.5
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.49
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.49
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.49
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.46
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.45
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.43
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.43
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.4

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-18  Score=129.53  Aligned_cols=95  Identities=26%  Similarity=0.347  Sum_probs=89.2

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      |+|+..|.++.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....++.+.......+|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            77888999999999999999999999999999999999999988899888888889999999999999999999999999


Q ss_pred             eeEEEEEEEEEeccc
Q psy16852         87 VATCSANLIVLEKEE  101 (579)
Q Consensus        87 ~~~~~~~~~v~~~~~  101 (579)
                      ....++.|.|.+.|.
T Consensus        81 ~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          81 SRQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEECCEEEEEECSCS
T ss_pred             EEEEEEEEEEEecCC
Confidence            999999999987653

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.77  E-value=4.2e-19  Score=131.21  Aligned_cols=94  Identities=31%  Similarity=0.378  Sum_probs=86.7

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      +|+|+..|.++.+.+|+++.|.|.+.|.|.+.|+|+++|..+..+.++.....++...|.|.+++.+|+|.|+|.|.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            58999999999999999999999999999999999999999988877777777778899999999999999999999999


Q ss_pred             eeeEEEEEEEEEec
Q psy16852         86 GVATCSANLIVLEK   99 (579)
Q Consensus        86 g~~~~~~~~~v~~~   99 (579)
                      |.....+.|.|...
T Consensus        81 G~~~~~~~l~V~~~   94 (97)
T d1koaa1          81 GTKEEIVFLNVTRH   94 (97)
T ss_dssp             EEEEEEECCEEECS
T ss_pred             CEEEEEEEEEEeec
Confidence            99988888888754

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.77  E-value=9.4e-19  Score=128.17  Aligned_cols=92  Identities=20%  Similarity=0.285  Sum_probs=86.9

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      ++|.|+..+.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+..+.++..........|.|.+++.+|+|.|+|.|.|.
T Consensus         1 l~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            68999999999999999999999999999999999999999998888888888888999999999999999999999999


Q ss_pred             CeeeEEEEEEEE
Q psy16852         85 GGVATCSANLIV   96 (579)
Q Consensus        85 ~g~~~~~~~~~v   96 (579)
                      .|..+..+.|.|
T Consensus        81 ~G~~~~~~~l~V   92 (93)
T d1wiua_          81 LGEDEAIFEVIV   92 (93)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999988888877

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.76  E-value=6.7e-18  Score=125.97  Aligned_cols=94  Identities=36%  Similarity=0.562  Sum_probs=86.3

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeC-CEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE-SVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .++|.|...|.++.+.+|+++.|.|.+.|.|.+.+.|++||..+..+.++.+.... +..+|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (102)
T d1fhga_           6 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV   85 (102)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence            46899999999999999999999999999999999999999999988888876654 47889999999999999999999


Q ss_pred             cCCeeeEEEEEEEEE
Q psy16852         83 NIGGVATCSANLIVL   97 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~   97 (579)
                      |..|....++.|.|.
T Consensus        86 N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          86 NSLGEATCTAELLVE  100 (102)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCcEEEEEEEEEEE
Confidence            999999988888875

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.76  E-value=9.4e-18  Score=124.10  Aligned_cols=93  Identities=31%  Similarity=0.444  Sum_probs=84.3

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEE-EeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLIT-TVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      -+|+|+..|.+..+.+|+.++|.|.+.|.|.|.++||+||..+..+.+.... ..++..+|.|.+++.+|+|.|+|.|.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            3789999999999999999999999999999999999999999887775544 345678999999999999999999999


Q ss_pred             CCeeeEEEEEEEEE
Q psy16852         84 IGGVATCSANLIVL   97 (579)
Q Consensus        84 ~~g~~~~~~~~~v~   97 (579)
                      ..|....++.|.|.
T Consensus        83 ~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          83 IAGETSSHAFLLVQ   96 (98)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99999988988885

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=1.5e-17  Score=123.05  Aligned_cols=94  Identities=24%  Similarity=0.409  Sum_probs=81.4

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.|...+....+.+|+.++|.|.+.|.|.|.++|++++..|..+.+..+..                           
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~---------------------------   55 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYW---------------------------   55 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE---------------------------
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEe---------------------------
Confidence            37888888889999999999999999999999999999999998776644322                           


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                             ..+..+.|+|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus        56 -------~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          56 -------PEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             -------EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -------ccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEE
Confidence                   23345569999999999999999999999999999999986

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.75  E-value=8e-18  Score=121.41  Aligned_cols=87  Identities=24%  Similarity=0.427  Sum_probs=76.4

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST  487 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~  487 (579)
                      |.|...+.+..+..|+.+.|.|.+.|.|.|+++|+++|..+..+.++.+.                              
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~------------------------------   51 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS------------------------------   51 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE------------------------------
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee------------------------------
Confidence            56777788889999999999999999999999999999999876655431                              


Q ss_pred             eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                               .+.|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus        52 ---------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          52 ---------GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             ---------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ---------eeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence                     1249999999999999999999999999999999885

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.2e-18  Score=125.42  Aligned_cols=91  Identities=22%  Similarity=0.252  Sum_probs=78.7

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST  487 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~  487 (579)
                      |.|...+....+.+|+.+.|.|.+.|.|.|++.|++++..+..+.++.+..                             
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~-----------------------------   51 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN-----------------------------   51 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE-----------------------------
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEE-----------------------------
Confidence            556666778889999999999999999999999999999997776665533                             


Q ss_pred             eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                            .+..++|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus        52 ------~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   91 (101)
T d2cqva1          52 ------SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV   91 (101)
T ss_dssp             ------CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEE
T ss_pred             ------ecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEE
Confidence                  3345669999999999999999999999999999999987

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=5.7e-18  Score=123.91  Aligned_cols=92  Identities=14%  Similarity=0.254  Sum_probs=80.8

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      +|.|..++.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..                            
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~----------------------------   53 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA----------------------------   53 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEE----------------------------
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecc----------------------------
Confidence            6888888889999999999999999999999999999999887776665433                            


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                             .+..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus        54 -------~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          54 -------KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             -------ETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             -------cccceeeccccccccccEEEEEEEEECCCEEEEEEEEEEC
Confidence                   3455669999999999999999999999999999999873

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.74  E-value=1.5e-17  Score=124.09  Aligned_cols=94  Identities=27%  Similarity=0.502  Sum_probs=81.5

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.|++.|+++|..|..+.++.+..+                          
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~--------------------------   60 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD--------------------------   60 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEC--------------------------
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEe--------------------------
Confidence            478888888889999999999999999999999999999999988777665431                          


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ....++|.|.++..+|+|.|+|.|.|.+|....++.|.|+
T Consensus        61 --------~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          61 --------EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             --------TTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             --------cCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEE
Confidence                    1224559999999999999999999999999999999986

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=5.7e-18  Score=125.03  Aligned_cols=91  Identities=21%  Similarity=0.322  Sum_probs=78.9

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST  487 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~  487 (579)
                      |.|+..+....+.+|+.+.|.|.+.|.|.|+|.|++++..|..+.++.+..                             
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~-----------------------------   52 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY-----------------------------   52 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCC-----------------------------
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEe-----------------------------
Confidence            677777888899999999999999999999999999999997766654322                             


Q ss_pred             eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                            ++..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus        53 ------~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   92 (97)
T d1koaa1          53 ------NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT   92 (97)
T ss_dssp             ------STTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEE
T ss_pred             ------cCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEe
Confidence                  3445569999999999999999999999999999999986

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=6.5e-18  Score=121.87  Aligned_cols=88  Identities=26%  Similarity=0.499  Sum_probs=79.6

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      +|.|+..|.+..+.+|+++.|.|.+.|.|.|.++|+|||..+..+.++.+.  .  ..|.|.+++.+|+|.|+|.|.|..
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~--~--~~L~i~~v~~~D~G~Y~C~a~N~~   76 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS--G--GELRFSKLVLEDSGMYQCVAENKH   76 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE--T--TEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee--e--eeEEEEeecccCCEEEEEEEEeCC
Confidence            488999999999999999999999999999999999999999888776553  2  479999999999999999999999


Q ss_pred             eeeEEEEEEEEE
Q psy16852         86 GVATCSANLIVL   97 (579)
Q Consensus        86 g~~~~~~~~~v~   97 (579)
                      |....++.|.|.
T Consensus        77 G~~~~~~~l~V~   88 (89)
T d1cs6a4          77 GTVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            998888888874

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.71  E-value=3.2e-18  Score=124.58  Aligned_cols=90  Identities=28%  Similarity=0.483  Sum_probs=83.0

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      +|+..|.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+..+.++.+........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 rii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1tnna_           1 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK   80 (91)
T ss_dssp             CCSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCB
T ss_pred             CEEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCE
Confidence            47788999999999999999999999999999999999998888888888888999999999999999999999999998


Q ss_pred             eEEEEEEEEE
Q psy16852         88 ATCSANLIVL   97 (579)
Q Consensus        88 ~~~~~~~~v~   97 (579)
                      ...++.|.|.
T Consensus        81 ~~~~~~l~V~   90 (91)
T d1tnna_          81 QEAEFTLTIQ   90 (91)
T ss_dssp             CCEEEEEECC
T ss_pred             EEEEEEEEEE
Confidence            8888877764

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.69  E-value=6.6e-17  Score=116.59  Aligned_cols=86  Identities=30%  Similarity=0.504  Sum_probs=73.5

Q ss_pred             CCccccccCc-eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          6 APRFIEKIQP-VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         6 ~p~~~~~p~~-~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      +|.|...|.. +.+.+|+++.|.|.+.|.|.|.++|+++|..+..+ ++..  ..  ..|.|.+++.+|+|.|+|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~--~~--~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV--TD--SGLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE--ET--TEEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEE--ee--eeEEECCCChhhCEEEEEEEEEC
Confidence            5888887755 67899999999999999999999999999999644 3433  22  35999999999999999999999


Q ss_pred             CeeeEEEEEEEE
Q psy16852         85 GGVATCSANLIV   96 (579)
Q Consensus        85 ~g~~~~~~~~~v   96 (579)
                      .|.....+.|.|
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888887776

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.68  E-value=1.4e-17  Score=121.09  Aligned_cols=89  Identities=18%  Similarity=0.324  Sum_probs=75.1

Q ss_pred             eecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee
Q psy16852        410 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET  489 (579)
Q Consensus       410 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~  489 (579)
                      |+..|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+..                               
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~-------------------------------   50 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-------------------------------   50 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEE-------------------------------
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeee-------------------------------
Confidence            3445667889999999999999999999999999999887766655433                               


Q ss_pred             eeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                          ....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus        51 ----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          51 ----TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             ----CSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEECC
T ss_pred             ----ecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEEE
Confidence                3445669999999999999999999999999999999874

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.68  E-value=1.2e-16  Score=115.13  Aligned_cols=86  Identities=24%  Similarity=0.432  Sum_probs=70.1

Q ss_pred             CCeeecCC-CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        407 APKFTKPL-KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       407 ~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      +|.|...+ ....+.+|+.+.|.|.+.|.|.|++.|+++|..+..+ ++.+.                            
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~----------------------------   52 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT----------------------------   52 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE----------------------------
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEe----------------------------
Confidence            46666544 4467889999999999999999999999999998533 22221                            


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                                 ...|+|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        53 -----------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          53 -----------DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             -----------TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -----------eeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence                       113999999999999999999999999999998886

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=8.1e-17  Score=119.58  Aligned_cols=94  Identities=29%  Similarity=0.459  Sum_probs=78.1

Q ss_pred             CCCccccccCc--eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCC--EEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          5 LAPRFIEKIQP--VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH--YLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         5 ~~p~~~~~p~~--~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      +||.|...+..  ..+..|++++|.|.+.|.|.|.+.|+++|..+.....  .........+.|.|.+++.+|+|.|+|.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            68998876665  5668899999999999999999999999999864432  2223445568899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEe
Q psy16852         81 ATNIGGVATCSANLIVLE   98 (579)
Q Consensus        81 ~~~~~g~~~~~~~~~v~~   98 (579)
                      |.|..|.....+.|.|+.
T Consensus        82 a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          82 AENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEE
Confidence            999999999999998864

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.4e-16  Score=116.97  Aligned_cols=94  Identities=22%  Similarity=0.376  Sum_probs=73.0

Q ss_pred             CCeeecCCC--ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        407 APKFTKPLK--PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       407 ~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      ||.+...+.  +.++..|+.+.|.|.+.|.|.|.+.|+++|..+........                            
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~----------------------------   54 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDE----------------------------   54 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCS----------------------------
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccce----------------------------
Confidence            566664433  34677899999999999999999999999998865432111                            


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                           ........+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        55 -----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          55 -----KHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF   98 (100)
T ss_dssp             -----SEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -----eEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEE
Confidence                 01112334669999999999999999999999999999999985

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=3.5e-16  Score=113.46  Aligned_cols=86  Identities=22%  Similarity=0.302  Sum_probs=69.1

Q ss_pred             CCeeec-CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        407 APKFTK-PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       407 ~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      +|.+.. .+....+.+|+.++|.|.+.|.|.|.+.|++++.......                                 
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~---------------------------------   50 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW---------------------------------   50 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC---------------------------------
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe---------------------------------
Confidence            455554 3577889999999999999999999999999764332110                                 


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus        51 --------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          51 --------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             --------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             --------eeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence                    1123459999999999999999999999999999999875

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.66  E-value=2e-16  Score=116.32  Aligned_cols=82  Identities=20%  Similarity=0.368  Sum_probs=68.2

Q ss_pred             eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852        417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN  496 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~  496 (579)
                      ..+..|+.+.|.|.+.|.|.|++.|+++|..+..+.++..                                  ......
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~----------------------------------~~~~~~   60 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG----------------------------------YKVRNQ   60 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTC----------------------------------CEEEGG
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceee----------------------------------EEEcCC
Confidence            5678999999999999999999999999999865543221                                  011233


Q ss_pred             eeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        497 RSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          61 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            456999999999999999999999999999999987

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=2.9e-16  Score=113.96  Aligned_cols=87  Identities=29%  Similarity=0.427  Sum_probs=72.6

Q ss_pred             CCCccccc-cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          5 LAPRFIEK-IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         5 ~~p~~~~~-p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +||.|... |.++.+.+|++++|.|.+.|.|.|.|.|+|++.......      ......|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N   76 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW------LSSEPLLHIQNVDFEDEGTYECEAEN   76 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC------SBSSSEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe------eeeeeEEEeCCCCccCCEEEEEEEEE
Confidence            57777764 788999999999999999999999999999775443221      11235799999999999999999999


Q ss_pred             CCeeeEEEEEEEEE
Q psy16852         84 IGGVATCSANLIVL   97 (579)
Q Consensus        84 ~~g~~~~~~~~~v~   97 (579)
                      ..|....++.|.|.
T Consensus        77 ~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          77 IKGRDTYQGRIIIH   90 (91)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99998888888774

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3e-16  Score=111.42  Aligned_cols=81  Identities=21%  Similarity=0.435  Sum_probs=66.7

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      |.|..+|.+..+.+|+++.|.|.+.|.|.| +|+|||||..+.....         ..+.|.....+|+|.|+|.|.|..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~---------~~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SPSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------SSEEEEECCCSSCEEEEEEEEETT
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC---------cceEEecCCccccEEEEEEEEcCC
Confidence            789999999999999999999999999987 8999999999865421         234555566789999999999999


Q ss_pred             eeeEE-EEEEEE
Q psy16852         86 GVATC-SANLIV   96 (579)
Q Consensus        86 g~~~~-~~~~~v   96 (579)
                      |...+ .+.|.|
T Consensus        73 G~~~S~~~~v~V   84 (85)
T d1rhfa2          73 GLASSRTATVHL   84 (85)
T ss_dssp             EEEECCCEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            96543 566665

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.64  E-value=1.8e-16  Score=116.61  Aligned_cols=83  Identities=25%  Similarity=0.389  Sum_probs=69.5

Q ss_pred             CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852         14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHY-LITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA   92 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~   92 (579)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++||..+....+. .........+|.|.+++.+|+|.|+|.|.|..|....++
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   92 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   92 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEE
Confidence            3467889999999999999999999999999998654322 122333456899999999999999999999999988888


Q ss_pred             EEEE
Q psy16852         93 NLIV   96 (579)
Q Consensus        93 ~~~v   96 (579)
                      .|.|
T Consensus        93 ~l~V   96 (97)
T d3dara1          93 HLDV   96 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8877

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-15  Score=112.41  Aligned_cols=91  Identities=23%  Similarity=0.375  Sum_probs=78.3

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEec------CCCCEEEEEeCCEEEEEEcCCC-CCCCEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELH------ATEHYLITTVESVSTLEIINPT-KEDIGVY   77 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~------~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y   77 (579)
                      ||.|...+.+..+.+|+.++|.|.+.|.|.+ .+.||+++....      ...++..........|.|.+++ .+|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            8999999999999999999999999998877 799999764321      2345777777788999999998 5799999


Q ss_pred             EEEEEcCCeeeEEEEEEEE
Q psy16852         78 TCKATNIGGVATCSANLIV   96 (579)
Q Consensus        78 ~C~~~~~~g~~~~~~~~~v   96 (579)
                      +|.|.|..|.....+.|.|
T Consensus        82 ~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          82 RCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999999999988888877

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-15  Score=109.59  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=71.9

Q ss_pred             CCCccccccC-ceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          5 LAPRFIEKIQ-PVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         5 ~~p~~~~~p~-~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      ++|.++.+|. .+.+.+|+++.|+|.+. +.|.+.|+|++++..+.     ........+.|+|.+++.+|+|.|+|.|.
T Consensus         1 vkP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~As   75 (90)
T d1gsma1           1 VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG-----AVQSDTGRSVLTVRNASLSAAGTRVCVGS   75 (90)
T ss_dssp             CCSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC-----CEEEESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CcCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee-----eeeccCceeeEEcCccChhhCCcEEEEEE
Confidence            3566666654 48889999999999985 67888999999776552     12344567899999999999999999999


Q ss_pred             cCCeeeEEEEEEEEE
Q psy16852         83 NIGGVATCSANLIVL   97 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~   97 (579)
                      |..|..+.++.|.|+
T Consensus        76 n~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          76 CGGRTFQHTVQLLVY   90 (90)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEEC
Confidence            999999998888874

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-15  Score=108.10  Aligned_cols=81  Identities=30%  Similarity=0.456  Sum_probs=65.4

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      |.|...+....+.+|+.+.|.|.+.|.|.| +|+|+|||..+.....                                 
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~---------------------------------   48 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------------------------------   48 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------------------------------
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC---------------------------------
Confidence            677777888889999999999999999998 9999999998854321                                 


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEEE
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLSL  532 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v  532 (579)
                                 +.++|.....+|+|.|+|.|.|..|... ..+.|.|
T Consensus        49 -----------~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          49 -----------SPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             -----------SSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -----------cceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEE
Confidence                       1145566667899999999999999654 4677776

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3e-15  Score=108.31  Aligned_cols=81  Identities=15%  Similarity=0.279  Sum_probs=66.7

Q ss_pred             CceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+....                                      ....
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--------------------------------------~~~~   50 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK--------------------------------------VTNE   50 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE--------------------------------------EEEE
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccceeee--------------------------------------eeee
Confidence            34557789999999999999999999999876553221                                      1123


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ...++|.|.+++.+|+|.|+|+|.|..|....+++|.|.
T Consensus        51 ~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          51 GTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             TTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            455679999999999999999999999999999999874

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.62  E-value=2.4e-15  Score=113.91  Aligned_cols=105  Identities=22%  Similarity=0.254  Sum_probs=72.7

Q ss_pred             CCCeeecC-CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        406 EAPKFTKP-LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       406 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      ..|.+... +.+.++..|++++|.|.+.|.|.|.|.|++++.........       ++               ......
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~-------~~---------------~~~~~~   60 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGP-------DG---------------LPYLKV   60 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-----------------------------------CEEE
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceecc-------CC---------------ceeEee
Confidence            46777765 57899999999999999999999999999976543211000       00               000001


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      .........+...+.|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus        61 ~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          61 LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             ECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             cccceeEEecCCcEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            111111222334577999999999999999999999999999999987

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=5.5e-16  Score=112.60  Aligned_cols=91  Identities=19%  Similarity=0.335  Sum_probs=75.2

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      .+.|...|.+..+.+|+.+.|.|.+.|.|.|.++|+++|..+............. ++|.|.+++.+|+|.|+|.|.|..
T Consensus         1 k~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~   79 (92)
T d1epfa2           1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILA   79 (92)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGG
T ss_pred             CcEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECc
Confidence            3678889999999999999999999999999999999999987665443333332 469999999999999999999987


Q ss_pred             eeeEEEEEEEEE
Q psy16852         86 GVATCSANLIVL   97 (579)
Q Consensus        86 g~~~~~~~~~v~   97 (579)
                      +.......+.|.
T Consensus        80 ~~~~~~~~i~Vi   91 (92)
T d1epfa2          80 RGEINFKDIQVI   91 (92)
T ss_dssp             GTEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            766665666553

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-15  Score=107.56  Aligned_cols=86  Identities=16%  Similarity=0.216  Sum_probs=68.2

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      |+.+..+.....+..|+++.|.|.+. |.|.|+|.|++.+.++..                                   
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----------------------------------   47 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----------------------------------   47 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----------------------------------
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----------------------------------
Confidence            34444444557788999999999985 789999999987655421                                   


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                           .......++|+|.+++.+|+|.|+|+|+|..|....+++|.|
T Consensus        48 -----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          48 -----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             -----EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -----eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEE
Confidence                 111344567999999999999999999999999999999987

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-16  Score=111.15  Aligned_cols=72  Identities=26%  Similarity=0.260  Sum_probs=62.2

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +.+.++.+|+.+.|.|.+.|.|.|++.|+|+|..+...                                          
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~------------------------------------------   48 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI------------------------------------------   48 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT------------------------------------------
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee------------------------------------------
Confidence            46678999999999999999999999999998776433                                          


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                            +.+.+++.+|+|.|+|+|.|.+|+.+..+.|.|.
T Consensus        49 ------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          49 ------GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL   82 (84)
T ss_dssp             ------TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ------eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEE
Confidence                  2344677899999999999999999999999875

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.3e-15  Score=109.44  Aligned_cols=86  Identities=26%  Similarity=0.436  Sum_probs=72.8

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCC--EEEEEEcCCCCCCCEEEEEEEEcCCeeeE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVES--VSTLEIINPTKEDIGVYTCKATNIGGVAT   89 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~   89 (579)
                      .|.++.+.+|++++|.|.+.+.|.+.+.|+|+|..+....+........  ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            4788999999999999999999999999999999998776655555444  46799999999999999999999988654


Q ss_pred             -EEEEEEEE
Q psy16852         90 -CSANLIVL   97 (579)
Q Consensus        90 -~~~~~~v~   97 (579)
                       ..+.|.|.
T Consensus        82 S~~~~l~V~   90 (91)
T d1rhfa1          82 SQPVWLTVE   90 (91)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence             46777764

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=1.8e-15  Score=109.77  Aligned_cols=90  Identities=14%  Similarity=0.232  Sum_probs=72.8

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST  487 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~  487 (579)
                      +.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....+..+..                             
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~-----------------------------   52 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV-----------------------------   52 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEE-----------------------------
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeee-----------------------------
Confidence            445566778899999999999999999999999999999987665444322                             


Q ss_pred             eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                             ...+.|.|.+++.+|+|.|+|.|.|..|.......|+|.
T Consensus        53 -------~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          53 -------LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI   91 (92)
T ss_dssp             -------CTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             -------eeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEEE
Confidence                   011239999999999999999999998888777777763

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.6e-15  Score=109.18  Aligned_cols=95  Identities=18%  Similarity=0.183  Sum_probs=72.6

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .||.++....   ...++...|.|.+.|.|.|++.|+++|..|..+.+..+....                         
T Consensus         3 ~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~-------------------------   54 (103)
T d1wwbx_           3 FAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHV-------------------------   54 (103)
T ss_dssp             CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEE-------------------------
T ss_pred             cCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecc-------------------------
Confidence            3677754322   235677889999999999999999999999876655543210                         


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                           .......+.|.|.+++.+|+|.|+|.|.|.+|+++.++.|.|.
T Consensus        55 -----~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~   97 (103)
T d1wwbx_          55 -----TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM   97 (103)
T ss_dssp             -----ECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCS
T ss_pred             -----cccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEE
Confidence                 0011224569999999999999999999999999999999864

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.4e-15  Score=109.56  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=74.6

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      ||.+...+....+.+|+.++|.|.+.|.|+| .+.|++++.......                    .....+.      
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~--------------------~~~~~~~------   55 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKAL--------------------MNGSESR------   55 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEEC--------------------CTTGGGT------
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeec--------------------ccCCCce------
Confidence            6788878888889999999999999999988 799999753221000                    0001111      


Q ss_pred             cceeeeeeeCCeeEEEEeecc-cccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKIT-RDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                         +.+...+..+.|.|.++. .+|+|.|+|.|.|.+|.....+.|.|+
T Consensus        56 ---~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          56 ---FFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             ---EEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ---EEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEEC
Confidence               133445667789999998 579999999999999999999999873

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=3.8e-15  Score=107.78  Aligned_cols=82  Identities=20%  Similarity=0.297  Sum_probs=66.6

Q ss_pred             cCCCceeeecCCCeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        412 KPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      ..+....+.+|+.+.|.|.+. +.|.|.+.|+|++..+..+....                                   
T Consensus         7 ~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~-----------------------------------   51 (89)
T d1gl4b_           7 EEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD-----------------------------------   51 (89)
T ss_dssp             CSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE-----------------------------------
T ss_pred             cCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe-----------------------------------
Confidence            345667899999999999997 57888999999887765432110                                   


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                           ..+.|+|.+++.+|+|.|+|.|.|..|.+..++.|.|+
T Consensus        52 -----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          52 -----FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             -----ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             -----eceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence                 12349999999999999999999999999999999873

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.58  E-value=1.5e-15  Score=111.83  Aligned_cols=90  Identities=26%  Similarity=0.399  Sum_probs=74.8

Q ss_pred             CCCCccccccCceeeeCC---CCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQE---QPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G---~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      -++|.|+..|.+..+.+|   ++++|.|.+.|.|.|.++|++||..+............+ ..|.|..+..+|+|.|+|.
T Consensus         2 ~~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~   80 (97)
T d1cs6a1           2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQCV   80 (97)
T ss_dssp             CEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEEE
T ss_pred             CcCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEEE
Confidence            468999999999988876   789999999999999999999999997665444444433 6789999999999999999


Q ss_pred             EEcCCeeeEE-EEEE
Q psy16852         81 ATNIGGVATC-SANL   94 (579)
Q Consensus        81 ~~~~~g~~~~-~~~~   94 (579)
                      |.|..|...+ .+.|
T Consensus        81 a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          81 ATNARGTVVSREASL   95 (97)
T ss_dssp             EEETTEEEECCCEEE
T ss_pred             EEECCCEEEEEEEEE
Confidence            9999997643 4544

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.2e-16  Score=114.03  Aligned_cols=89  Identities=19%  Similarity=0.236  Sum_probs=72.1

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      .|.+...+.+.++.+|+.+.|.|.+.|.|.|.++|++++..+....+.                                
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~--------------------------------   49 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--------------------------------   49 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--------------------------------
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee--------------------------------
Confidence            577777778888999999999999999999999999998766322110                                


Q ss_pred             ceeeeeeeCCeeEEEEeecccccce-eEEEEEEeCCeeEEEEEEEEE
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIG-DVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                           ......+.|.|.+++.+|.| .|+|.|.|.+|.+..++.|.|
T Consensus        50 -----~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          50 -----SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             -----CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCC
T ss_pred             -----eeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEEE
Confidence                 11233456999999999999 799999999999998888765

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.58  E-value=5.7e-15  Score=108.43  Aligned_cols=86  Identities=14%  Similarity=0.214  Sum_probs=69.1

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +.+..+..|+++.|.|.+.|.|.|.+.|+++|..+.......+..                                 ..
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~---------------------------------~~   56 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR---------------------------------HN   56 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES---------------------------------CS
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeee---------------------------------ee
Confidence            356789999999999999999999999999999987655433321                                 01


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEE
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSL  532 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  532 (579)
                      ....+.|.|.+++.+|+|.|+|.|.|.+|.. ..++.|+|
T Consensus        57 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~V   96 (97)
T d1biha3          57 RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV   96 (97)
T ss_dssp             SSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEE
T ss_pred             ecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEE
Confidence            2234569999999999999999999999975 45788886

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.58  E-value=3.9e-15  Score=112.76  Aligned_cols=93  Identities=29%  Similarity=0.314  Sum_probs=71.3

Q ss_pred             CCCccccc-cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC----CCCEEEE---------EeCCEEEEEEcCCC
Q psy16852          5 LAPRFIEK-IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA----TEHYLIT---------TVESVSTLEIINPT   70 (579)
Q Consensus         5 ~~p~~~~~-p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~----~~~~~~~---------~~~~~~~L~i~~~~   70 (579)
                      .+|.|... |.++.+.+|++++|.|.+.|.|.|.|.|+|++.....    .......         .......|+|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            46888775 7899999999999999999999999999997654321    1110011         11124789999999


Q ss_pred             CCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         71 KEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      .+|+|.|+|.|.|..|....++.|+|+
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999999998888873

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-14  Score=105.01  Aligned_cols=84  Identities=15%  Similarity=0.211  Sum_probs=70.4

Q ss_pred             cccC-ceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeE
Q psy16852         11 EKIQ-PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVAT   89 (579)
Q Consensus        11 ~~p~-~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~   89 (579)
                      ..|. .+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....   .........|.|.+++.+|+|.|+|.|.|..|..+
T Consensus         5 i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~   81 (90)
T d1vcaa2           5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLE   81 (90)
T ss_dssp             EESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred             EECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEE
Confidence            3444 4667899999999999999999999999887654332   23455678999999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy16852         90 CSANLIVL   97 (579)
Q Consensus        90 ~~~~~~v~   97 (579)
                      .++.|.|+
T Consensus        82 ~~~~v~V~   89 (90)
T d1vcaa2          82 KGIQVEIY   89 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            98888875

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-14  Score=108.47  Aligned_cols=100  Identities=16%  Similarity=0.202  Sum_probs=73.8

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeC---CCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCceeEEE
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEAVYSV  482 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c  482 (579)
                      .|.|+..+.+.++..|+.++|.|.+.|.|   .|.|.|++++..... .....+..           ....         
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~-----------~~~~---------   63 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQL-----------HDSY---------   63 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEE-----------EEEE---------
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEe-----------eeee---------
Confidence            45677778889999999999999999999   578999998754322 22211111           0000         


Q ss_pred             EeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       483 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                             ........+.|.|.+++.+|+|.|+|.|+|..|...+++.|.|.
T Consensus        64 -------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          64 -------DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             -------ETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -------EEecccCEEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEE
Confidence                   00011234569999999999999999999999999999999986

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.57  E-value=3.5e-15  Score=109.60  Aligned_cols=85  Identities=24%  Similarity=0.339  Sum_probs=70.1

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEE--EeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeE-
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLIT--TVESVSTLEIINPTKEDIGVYTCKATNIGGVAT-   89 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-   89 (579)
                      ++++.+.+|+++.|.|.+.|.|.+.+.|+++|..+.........  ......+|.|.+++.+|+|.|+|.|.|..|... 
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            57899999999999999999999999999999998755443322  223446899999999999999999999998754 


Q ss_pred             EEEEEEEE
Q psy16852         90 CSANLIVL   97 (579)
Q Consensus        90 ~~~~~~v~   97 (579)
                      .++.|.|+
T Consensus        90 ~s~~L~Vl   97 (97)
T d1biha3          90 HSLKLTVV   97 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEC
Confidence            46777763

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.3e-15  Score=116.93  Aligned_cols=93  Identities=24%  Similarity=0.329  Sum_probs=78.1

Q ss_pred             CCCccc-----cccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC-----------------------------C
Q psy16852          5 LAPRFI-----EKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA-----------------------------T   50 (579)
Q Consensus         5 ~~p~~~-----~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~-----------------------------~   50 (579)
                      .||++.     ..|..+.|.+|+.++|.|.+.|.|.|.+.|++++..+..                             .
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            477764     357789999999999999999999999999997754421                             2


Q ss_pred             CCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         51 EHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        51 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      .++.+........|.|.+++.+|+|.|+|.|.|..|.....+.|.|+
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            34566667778899999999999999999999999999998888885

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.3e-15  Score=108.12  Aligned_cols=83  Identities=20%  Similarity=0.330  Sum_probs=68.7

Q ss_pred             cccccCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      ++..|.+..+.+|+++.|.|.+. +.|.+.+.|+|+|..+......   ..  ...|+|.+++.+|+|.|+|.|.|..|.
T Consensus         5 ~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~---~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1gl4b_           5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM---DF--NGILTIRNVQPSDAGTYVCTGSNMFAM   79 (89)
T ss_dssp             EECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE---EE--TTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             EEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE---ee--ceEEEEecCCcccCEEEEEEEEECCCE
Confidence            34457889999999999999997 5677899999999877655321   12  247999999999999999999999998


Q ss_pred             eEEEEEEEE
Q psy16852         88 ATCSANLIV   96 (579)
Q Consensus        88 ~~~~~~~~v   96 (579)
                      ...++.|.|
T Consensus        80 ~~~~~~l~V   88 (89)
T d1gl4b_          80 DQGTATLHV   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888888776

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.5e-15  Score=106.78  Aligned_cols=74  Identities=16%  Similarity=0.168  Sum_probs=65.0

Q ss_pred             ceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEE
Q psy16852         15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSANL   94 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~   94 (579)
                      +..|.+|++++|.|.+.|.|.|.+.|++++..+....          ..|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~----------~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v   77 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG----------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI   77 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEES----------SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceeee----------eeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence            4679999999999999999999999999876554322          469999999999999999999999999999888


Q ss_pred             EEEe
Q psy16852         95 IVLE   98 (579)
Q Consensus        95 ~v~~   98 (579)
                      .|+.
T Consensus        78 ~V~~   81 (84)
T d2nxyb2          78 VVLA   81 (84)
T ss_dssp             CEEC
T ss_pred             EEEe
Confidence            8874

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.7e-15  Score=105.88  Aligned_cols=72  Identities=15%  Similarity=0.164  Sum_probs=61.6

Q ss_pred             eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852        417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN  496 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~  496 (579)
                      ..+.+|+.++|.|.+.|.|.|++.|++++..+..                                             .
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~---------------------------------------------~   43 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------------------------------------------G   43 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE---------------------------------------------E
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeeccccee---------------------------------------------e
Confidence            4588999999999999999999999997644321                                             1


Q ss_pred             eeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        497 RSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ...|+|.++..+|+|.|+|.|.|..|.....+.|.|+
T Consensus        44 ~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~   80 (84)
T d2nxyb2          44 GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL   80 (84)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEE
T ss_pred             eeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEE
Confidence            2248999999999999999999999999999999886

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.56  E-value=1.8e-15  Score=110.81  Aligned_cols=84  Identities=26%  Similarity=0.512  Sum_probs=71.2

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      .|.|...|.++.+.+|+.++|.|.+.|.|.+ .+.|++||..+....... .......+|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNA-ALRKDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTE-EECTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeeccee-eecccceEEEEeccChhcCeEEEEEEEeC
Confidence            5889999999999999999999999998865 799999999987554332 23344568999999999999999999999


Q ss_pred             CeeeEE
Q psy16852         85 GGVATC   90 (579)
Q Consensus        85 ~g~~~~   90 (579)
                      .|...+
T Consensus        81 ~G~~~s   86 (94)
T d1biha1          81 AGVASS   86 (94)
T ss_dssp             TEEEEC
T ss_pred             CCEEEE
Confidence            997654

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.5e-14  Score=106.73  Aligned_cols=94  Identities=20%  Similarity=0.276  Sum_probs=69.9

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .||.+.....   ...+....|.|.+.|.|.|++.|+++|..|..+.+..+...                          
T Consensus         4 ~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~--------------------------   54 (105)
T d1wwca_           4 YPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY--------------------------   54 (105)
T ss_dssp             CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEE--------------------------
T ss_pred             cCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEE--------------------------
Confidence            3666653222   12344456888999999999999999999977665543220                          


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                           .......+.|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus        55 -----~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~   97 (105)
T d1wwca_          55 -----QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL   97 (105)
T ss_dssp             -----ECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             -----eecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEE
Confidence                 1112234569999999999999999999999999999999875

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.7e-16  Score=108.50  Aligned_cols=79  Identities=28%  Similarity=0.367  Sum_probs=67.4

Q ss_pred             CCcccc--ccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          6 APRFIE--KIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         6 ~p~~~~--~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +|+|..  .|.++.+.+|+.+.|.|.+.|.|.|.++|+|+|..+....             .+.+++.+|+|.|+|.|.|
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N   68 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARS   68 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEc
Confidence            577743  4788999999999999999999999999999998775443             2345788999999999999


Q ss_pred             CCeeeEEEEEEEEE
Q psy16852         84 IGGVATCSANLIVL   97 (579)
Q Consensus        84 ~~g~~~~~~~~~v~   97 (579)
                      ..|..+..+.|.|.
T Consensus        69 ~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          69 TQGEVTREVTVNVL   82 (84)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99999888888885

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.8e-14  Score=107.54  Aligned_cols=95  Identities=25%  Similarity=0.335  Sum_probs=75.7

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeC----CEEEEEEcCCCCCCCEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVE----SVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~   78 (579)
                      ..+||+++...+.   ..+....|.|.+.|.|.|.+.|++||..+..+.+.......    ..+.|.|.+++.+|+|.|+
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            3678888664332   24455668889999999999999999999877766544322    2467999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEecc
Q psy16852         79 CKATNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        79 C~~~~~~g~~~~~~~~~v~~~~  100 (579)
                      |.|.|..|..+.++.|.|.++|
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          79 LIAKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EEEEETTEEEEEEEEECCSCCC
T ss_pred             EEEEcCCCEEEEEEEEEEEeCC
Confidence            9999999999999998887654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=5.7e-15  Score=108.60  Aligned_cols=89  Identities=17%  Similarity=0.294  Sum_probs=69.9

Q ss_pred             CCeeecCCCceeeecC---CCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        407 APKFTKPLKPVIAEAQ---SPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      +|.|...+.+..+.+|   +.++|.|.+.|.|.|.++|+++|..+....+..+..                         
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~-------------------------   58 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL-------------------------   58 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEE-------------------------
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEe-------------------------
Confidence            6777777777776665   689999999999999999999999987655433321                         


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEE
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLS  531 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~  531 (579)
                                 .....|.|..+..+|+|.|+|.|.|.+|... .++.|+
T Consensus        59 -----------~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          59 -----------VAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             -----------ETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             -----------eeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence                       1224588888999999999999999999864 456664

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-14  Score=105.41  Aligned_cols=90  Identities=22%  Similarity=0.428  Sum_probs=74.6

Q ss_pred             cCCCCccccccCc-eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCC-CCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          3 EVLAPRFIEKIQP-VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHAT-EHYLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         3 ~~~~p~~~~~p~~-~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      +--+|.|++.+++ ..|.+|+++.|.|.+. .|.+.++||+||..+..+ ..+.+...++...|.|.+++.+|+|.|+|.
T Consensus         2 e~~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~   80 (94)
T d1pd6a_           2 EKKSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV   80 (94)
T ss_dssp             CSTTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEE
T ss_pred             CCCCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEE
Confidence            4567889998776 5799999999999985 588899999999999754 456777778889999999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEE
Q psy16852         81 ATNIGGVATCSANLIVL   97 (579)
Q Consensus        81 ~~~~~g~~~~~~~~~v~   97 (579)
                      |.|    ...++.|.|.
T Consensus        81 a~n----~~~s~~l~V~   93 (94)
T d1pd6a_          81 VGG----EKCSTELFVK   93 (94)
T ss_dssp             ETT----EEECCEEEEE
T ss_pred             Eee----EEEEEEEEEE
Confidence            965    3455566664

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.9e-14  Score=107.45  Aligned_cols=88  Identities=17%  Similarity=0.176  Sum_probs=65.8

Q ss_pred             eeecCCCeEEE---EEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        418 IAEAQSPATLK---ATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       418 ~~~~g~~~~l~---C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      .+..|....+.   |.+.|.|.|++.|+++|..|..+.+.......           ..  +               ...
T Consensus         8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~-----------~~--~---------------~~~   59 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLE-----------PA--A---------------NET   59 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEEC-----------CC--S---------------SCC
T ss_pred             EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeee-----------ee--e---------------eee
Confidence            45556666555   58999999999999999999776655443210           00  0               012


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ...+.|.|.++..+|+|.|+|.|.|.+|.+.+++.|.|.
T Consensus        60 ~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~   98 (107)
T d1he7a_          60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM   98 (107)
T ss_dssp             CEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             ccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEE
Confidence            234669999999999999999999999999999999864

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.9e-15  Score=117.18  Aligned_cols=114  Identities=15%  Similarity=0.256  Sum_probs=78.0

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +..+++.+|+.++|.|.+.|.|.|.+.|++++..+................    .......+.+.+  .....+..+..
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~r~~~~~   89 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTG----DSDEWVFDKKLL--CETEGRVRVET   89 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCC----CSSCCCCSCCCC--CSCSSSCEEEE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccc----cceeeecCCcee--eccCceEEEEE
Confidence            456789999999999999999999999999988775543322211000000    000000000000  01112345566


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ....+.|+|.++..+|+|.|+|.|.|.+|.+.+++.|.|.
T Consensus        90 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          90 TKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             ETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            7788899999999999999999999999999999999874

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.8e-16  Score=112.67  Aligned_cols=89  Identities=25%  Similarity=0.236  Sum_probs=74.9

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCE-EEEEEEEcC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIG-VYTCKATNI   84 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~   84 (579)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+.....  .........|.|.+++.+|+| .|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcC
Confidence            48889999999999999999999999999999999999977653221  122345688999999999999 799999999


Q ss_pred             CeeeEEEEEEEE
Q psy16852         85 GGVATCSANLIV   96 (579)
Q Consensus        85 ~g~~~~~~~~~v   96 (579)
                      .|....++.|.|
T Consensus        80 ~G~~~~s~~l~V   91 (92)
T d2ifga1          80 VGRAEVSVQVNV   91 (92)
T ss_dssp             TEECCEEECCCC
T ss_pred             CCEEEEEEEEEE
Confidence            998887776654

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=110.74  Aligned_cols=96  Identities=17%  Similarity=0.208  Sum_probs=70.5

Q ss_pred             eecCCCceeeecCCCeEEEEEEEeeC---CCeEEEeeCCEEcC---CCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        410 FTKPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEIL---PDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       410 ~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~~~l~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      |...+.+.++.+|+.++|.|.+.|.|   .|+|.|+|++....   ...+..+..             ..          
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~-------------~~----------   59 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE-------------TF----------   59 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEE-------------EE----------
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeecc-------------ce----------
Confidence            44566778899999999999999998   57999999875431   111111110             00          


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEee
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLLP  534 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  534 (579)
                            ........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus        60 ------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  104 (113)
T d2dava1          60 ------ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE  104 (113)
T ss_dssp             ------ETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             ------eeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEc
Confidence                  011122345699999999999999999999999999999999863

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.9e-15  Score=107.19  Aligned_cols=87  Identities=15%  Similarity=0.238  Sum_probs=69.0

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      |.+.++.+|+.+.|.|.+.|.|.|.+.|+|++..+....+..+...                                 .
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~---------------------------------~   49 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVS---------------------------------E   49 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEE---------------------------------T
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeec---------------------------------c
Confidence            3556789999999999999999999999999999876554433221                                 1


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLL  533 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~  533 (579)
                      +...+.|+|.+++.+|+|.|+|.|.|..|.. +..+.|+|.
T Consensus        50 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          50 QHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             TEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             cCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            1224569999999999999999999999975 457788764

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-14  Score=109.59  Aligned_cols=93  Identities=19%  Similarity=0.244  Sum_probs=75.0

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeC---CCeeEEEECCEEecCC---CCEEEEEe------CCEEEEEEcCCCCCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHP---LPTMTWQKDGTELHAT---EHYLITTV------ESVSTLEIINPTKED   73 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~---~~~v~W~~~g~~~~~~---~~~~~~~~------~~~~~L~i~~~~~~d   73 (579)
                      .|.|+..|.++.+.+|++++|.|.+.|.|   .|.|.|+|++......   .+......      ...+.|.|.+++.+|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            46789999999999999999999999988   4689999987543221   22222211      124689999999999


Q ss_pred             CEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852         74 IGVYTCKATNIGGVATCSANLIVLE   98 (579)
Q Consensus        74 ~G~Y~C~~~~~~g~~~~~~~~~v~~   98 (579)
                      +|.|+|.|.|..|..+.++.|.|.+
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEe
Confidence            9999999999999999999999864

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.6e-14  Score=104.26  Aligned_cols=84  Identities=23%  Similarity=0.311  Sum_probs=71.3

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCC--CEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATE--HYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      |++++.++.+.+|+++.|.|.+. .|.+.+.||++|..+..+.  .+.....+...+|.|.+++.+|+|.|+|.|.|   
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---   78 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG---   78 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT---
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec---
Confidence            67789999999999999999994 6778999999999987554  46677777889999999999999999999965   


Q ss_pred             eeEEEEEEEEE
Q psy16852         87 VATCSANLIVL   97 (579)
Q Consensus        87 ~~~~~~~~~v~   97 (579)
                       ...++.++|.
T Consensus        79 -~~~~a~l~V~   88 (90)
T d1x44a1          79 -GQSSAKLSVD   88 (90)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -ceEEEEEEEE
Confidence             4556677775

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.54  E-value=7.4e-15  Score=107.42  Aligned_cols=83  Identities=16%  Similarity=0.268  Sum_probs=67.7

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .|.|...+....+.+|+.+.|.|.+.|.|.| .+.|+++|..+.........                            
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~----------------------------   53 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL----------------------------   53 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE----------------------------
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee----------------------------
Confidence            6788888888999999999999999999976 79999999988654433221                            


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT  525 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  525 (579)
                              ....++|.|.++..+|+|.|+|.|.|..|...
T Consensus        54 --------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          54 --------RKDEGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             --------CTTSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             --------cccceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence                    11223499999999999999999999999754

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.8e-15  Score=112.73  Aligned_cols=93  Identities=27%  Similarity=0.331  Sum_probs=74.1

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC---CCeeEEEECCEEec---CCCCEEEEEe------CCEEEEEEcCCCCCCCE
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP---LPTMTWQKDGTELH---ATEHYLITTV------ESVSTLEIINPTKEDIG   75 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~---~~~v~W~~~g~~~~---~~~~~~~~~~------~~~~~L~i~~~~~~d~G   75 (579)
                      .|+..|.++.+.+|++++|.|.+.|.|   .|.|.|+|++....   ....+.....      .....|.|.+++.+|+|
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            478889999999999999999999987   47999999875431   2223322211      12467999999999999


Q ss_pred             EEEEEEEcCCeeeEEEEEEEEEecc
Q psy16852         76 VYTCKATNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~~~~~~v~~~~  100 (579)
                      .|+|.|.|..|..+..+.|.|.+++
T Consensus        82 ~Y~C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          82 NYRCEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEEEECSSCEEEECCEEEEECCC
T ss_pred             EEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            9999999999999999999997553

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=5.1e-14  Score=103.37  Aligned_cols=89  Identities=21%  Similarity=0.401  Sum_probs=70.9

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCC-CeeEEEE-CCEEec-CCCCEEEE-EeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQK-DGTELH-ATEHYLIT-TVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~-~g~~~~-~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      +...|....+.+|+++.|.|.+.|.|. +.+.|++ +|..+. ...++... ......+|.|.+++.+|+|.|+|.|.|.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            456788899999999999999998875 6999999 556554 34455543 3456789999999999999999999999


Q ss_pred             Ceee-EEEEEEEEE
Q psy16852         85 GGVA-TCSANLIVL   97 (579)
Q Consensus        85 ~g~~-~~~~~~~v~   97 (579)
                      .|.. ..++.|.|+
T Consensus        83 ~G~~~~~tv~l~V~   96 (97)
T d1epfa1          83 DGTQSEATVNVKIF   96 (97)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            8864 456777664

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=4e-14  Score=103.98  Aligned_cols=86  Identities=17%  Similarity=0.294  Sum_probs=64.3

Q ss_pred             CCceeeecCCCeEEEEEEEeeCC-CeEEEeeC-CEEcCCC-CCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPT-PSICWYRG-KEEILPD-NGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~-~~~l~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      +....+..|+.+.|.|.+.|.|+ |+|.|+++ |..+... .++.+.                                 
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~---------------------------------   53 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV---------------------------------   53 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEE---------------------------------
T ss_pred             CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEE---------------------------------
Confidence            45667899999999999999985 69999994 4444332 222221                                 


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCeeE-EEEEEEEEe
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV-TCTATLSLL  533 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~  533 (579)
                       ......++|.|.+++.+|+|.|+|.|.|..|.. .+++.|+|.
T Consensus        54 -~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          54 -WNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             -EEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             -eecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence             113345679999999999999999999999964 456777763

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.53  E-value=7.5e-15  Score=105.21  Aligned_cols=83  Identities=18%  Similarity=0.276  Sum_probs=65.8

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      .+++++....|.+|++++|+|.+.+ .|.+.+.|||||+.+....        ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         4 ~Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~--------~~~~l~I~~v~~~dsG~Y~C~a~n~~~   75 (89)
T d1fnla2           4 WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH--------HNSDFHIPKATLKDSGSYFCRGLVGSK   75 (89)
T ss_dssp             SEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE--------ECCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec--------cccccEECccceeccceEEEEEEeCCC
Confidence            4566777788999999999999864 4556899999998874321        125789999999999999999999888


Q ss_pred             eeE-EEEEEEEEe
Q psy16852         87 VAT-CSANLIVLE   98 (579)
Q Consensus        87 ~~~-~~~~~~v~~   98 (579)
                      ... ..+.|+|++
T Consensus        76 ~~~S~~v~itV~E   88 (89)
T d1fnla2          76 NVSSETVNITITQ   88 (89)
T ss_dssp             EEECCCEEEEEEC
T ss_pred             CeEEeeEEEEEEe
Confidence            654 457777754

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.4e-14  Score=105.26  Aligned_cols=94  Identities=21%  Similarity=0.261  Sum_probs=76.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEe--C---CEEEEEEcCCCCCCCEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTV--E---SVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~--~---~~~~L~i~~~~~~d~G~Y~   78 (579)
                      -+||.|+.....   ..+..+.|.|.+.|.|.|.+.|++||+.+..+........  .   ..+.|.|.+++.+|+|.|+
T Consensus         2 ~~pP~it~~~~~---~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (103)
T d1wwbx_           2 HFAPTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             ccCCeeEEcCCC---ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEE
Confidence            368888653332   4678889999999999999999999999987766654432  1   2467999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEecc
Q psy16852         79 CKATNIGGVATCSANLIVLEKE  100 (579)
Q Consensus        79 C~~~~~~g~~~~~~~~~v~~~~  100 (579)
                      |.|.|..|..+.++.|.|.++|
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~P  100 (103)
T d1wwbx_          79 LIAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEECSSCEEEEEEEECCSCCC
T ss_pred             EEEeccCCEEEEEEEEEEEeCC
Confidence            9999999999999888887643

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=106.96  Aligned_cols=90  Identities=28%  Similarity=0.454  Sum_probs=66.3

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE---CCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK---DGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~---~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +|.|. .+.++.|.+|++++|.|.+.|.|.|.+.|++   ++..+...............+|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            68887 5999999999999999999999877665543   2222222222222222234679999999999999999999


Q ss_pred             cCCeeeEEE-EEEEE
Q psy16852         83 NIGGVATCS-ANLIV   96 (579)
Q Consensus        83 ~~~g~~~~~-~~~~v   96 (579)
                      |..|...+. +.|.|
T Consensus        81 N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          81 TEGGVGISNYAELVV   95 (96)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999986544 67776

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.52  E-value=1.5e-14  Score=103.45  Aligned_cols=81  Identities=14%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      +++++....|.+|++++|+|.+.+. |.+.+.|||||..+...        .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         3 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~--------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~   74 (88)
T d2fcba2           3 LVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS--------RSDPNFSIPQANHSHSGDYHCTGNIGYTL   74 (88)
T ss_dssp             EEEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------SSCCEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             EEEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc--------ccccccccCccCHHHCCeEEEEEEeCCCC
Confidence            4556667779999999999999654 55689999999887432        22367999999999999999999999886


Q ss_pred             eE-EEEEEEEE
Q psy16852         88 AT-CSANLIVL   97 (579)
Q Consensus        88 ~~-~~~~~~v~   97 (579)
                      .. ..+.|.|.
T Consensus        75 ~~S~~v~l~V~   85 (88)
T d2fcba2          75 YSSKPVTITVQ   85 (88)
T ss_dssp             EECCCEEEEEC
T ss_pred             EEeeeEEEEEe
Confidence            54 45677775

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-14  Score=107.66  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=72.2

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEECCEEecC---CCCEEEEEeC--CEEEEEEcCCCCCCCEEEEEE
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKDGTELHA---TEHYLITTVE--SVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~~g~~~~~---~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      |.|++.|....+.+|+++.|.|.+.|.| .|.++|+|++..+..   ..........  ....|.|.+++.+|+|.|+|.
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCS   83 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEE
Confidence            5678889999999999999999999988 589999998876532   2222222222  245799999999999999999


Q ss_pred             EEcCCeeeEE-EEEEEEEe
Q psy16852         81 ATNIGGVATC-SANLIVLE   98 (579)
Q Consensus        81 ~~~~~g~~~~-~~~~~v~~   98 (579)
                      |.|..|.... ++.|.|.+
T Consensus        84 A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          84 ANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEETTEEEECCCEEEEEEC
T ss_pred             EEcCCCeEEEEEEEEEEEE
Confidence            9999997654 67888764

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.1e-13  Score=102.32  Aligned_cols=101  Identities=24%  Similarity=0.218  Sum_probs=71.4

Q ss_pred             CeeecCCC-ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        408 PKFTKPLK-PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       408 p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      |.+..+.. ...+..|+.+.|.|.+.|.|.|.+.|+++|..+..........        ...... ....         
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~--------~~~~~~-~~~~---------   63 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGED--------YYSVEN-PANK---------   63 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEE--------EEEECC-SSCG---------
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeee--------eeeecc-ceee---------
Confidence            44554443 3567889999999999999999999999999987654433211        000000 0000         


Q ss_pred             ceeeeeeeCCeeEEEEeecccccce-eEEEEEEeCCeeEEEEEEEE
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIG-DVTCRAENVAGSVTCTATLS  531 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~  531 (579)
                           ......++|+|.+++.+|.| .|+|.|.|.+|.+++.+.|+
T Consensus        64 -----~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          64 -----RRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             -----GGEEEEEEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             -----ecccceEEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence                 01112467999999999999 59999999999998888886

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-14  Score=102.57  Aligned_cols=83  Identities=22%  Similarity=0.277  Sum_probs=66.5

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      +++++....|.+|++++|+|.+.+. +...+.|||||+.+.....        ...|.|.+++.+|+|.|+|+|.|..+.
T Consensus         3 Lilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~--------~~~l~i~~~~~~dsG~Y~C~a~n~~~~   74 (89)
T d1f2qa2           3 LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------NHNISITNATVEDSGTYYCTGKVWQLD   74 (89)
T ss_dssp             EEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC--------SSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc--------cceEEEeeeeeecCcEEEEEEEeCCCC
Confidence            4566777779999999999999665 4458999999998864432        257999999999999999999998876


Q ss_pred             eE-EEEEEEEEec
Q psy16852         88 AT-CSANLIVLEK   99 (579)
Q Consensus        88 ~~-~~~~~~v~~~   99 (579)
                      .. ..+.|+|++.
T Consensus        75 ~~S~~v~i~V~~~   87 (89)
T d1f2qa2          75 YESEPLNITVIKA   87 (89)
T ss_dssp             EECCCEEEEEECS
T ss_pred             eEeeeEEEEEEeC
Confidence            54 4577888754

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=3.8e-15  Score=111.01  Aligned_cols=87  Identities=22%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +++....+++++.|.+|+.+.|.|.+ .+.|.+.|.|+|+|..+......+.......++|.|.+++.+|+|.|+|.|.|
T Consensus         3 l~~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (105)
T d1cs6a2           3 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS   82 (105)
T ss_dssp             ECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCcccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEE
Confidence            44533444566899999999999997 68899999999999876544433344444556899999999999999999999


Q ss_pred             CCeeeEEE
Q psy16852         84 IGGVATCS   91 (579)
Q Consensus        84 ~~g~~~~~   91 (579)
                      ..|....+
T Consensus        83 ~~g~~~~~   90 (105)
T d1cs6a2          83 HIDFITKS   90 (105)
T ss_dssp             EETTEEEE
T ss_pred             CCCCEEEE
Confidence            77765543

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.51  E-value=2e-15  Score=108.48  Aligned_cols=85  Identities=21%  Similarity=0.178  Sum_probs=74.3

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGV   87 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~   87 (579)
                      +|.+++.++.+.+|+++.|.|.+ +.|.+.+.|||||..+..+.++.+...++...|.|.+++.+|+|.|+|.|.|..  
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~--   79 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK--   79 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB--
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE--
Confidence            46778999999999999999998 468889999999999999999988888888999999999999999999996643  


Q ss_pred             eEEEEEEEEE
Q psy16852         88 ATCSANLIVL   97 (579)
Q Consensus        88 ~~~~~~~~v~   97 (579)
                        .++.|.|.
T Consensus        80 --~sa~l~V~   87 (89)
T d1tiua_          80 --SAANLKVK   87 (89)
T ss_dssp             --CCEEEEEE
T ss_pred             --EEEEEEEE
Confidence              34566664

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=5.1e-14  Score=103.13  Aligned_cols=88  Identities=18%  Similarity=0.311  Sum_probs=69.7

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      ..|.+.  ..+..+.+|+.++|+|.+.+ |.+.+.|+++|..+..+.++.+.                            
T Consensus         4 ~~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~----------------------------   52 (96)
T d1l6za2           4 TQPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLS----------------------------   52 (96)
T ss_dssp             CCCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEE----------------------------
T ss_pred             CCCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceecc----------------------------
Confidence            356554  35667899999999999875 66799999999999877665542                            


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  533 (579)
                               ...++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus        53 ---------~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~   92 (96)
T d1l6za2          53 ---------QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII   92 (96)
T ss_dssp             ---------TTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEEC
T ss_pred             ---------CCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEE
Confidence                     2234599999999999999999999999765 46788864

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.8e-14  Score=102.91  Aligned_cols=92  Identities=16%  Similarity=0.152  Sum_probs=64.7

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEee--CCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYR--GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~--~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      +|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++  ++.......+..                             
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~-----------------------------   51 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK-----------------------------   51 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEE-----------------------------
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCcee-----------------------------
Confidence            67776 4788999999999999999999988655433  222211111100                             


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEE-EEEEEEe
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTC-TATLSLL  533 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~  533 (579)
                           .+......+.|.|.++..+|+|.|+|.|.|..|.... .+.|.|+
T Consensus        52 -----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          52 -----VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             -----EEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             -----EEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence                 0111223456999999999999999999999998654 4788873

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=2.9e-14  Score=104.47  Aligned_cols=91  Identities=22%  Similarity=0.330  Sum_probs=73.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +.+|.+  .+.+..+.+|++++|+|.+.+ +.+.+.|+++|..+....+....  ....+|.|.+++.+|+|.|+|.|.|
T Consensus         3 v~~P~i--~~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N   77 (96)
T d1l6za2           3 VTQPFL--QVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLS--QNNSILRIDPIKREDAGEYQCEISN   77 (96)
T ss_dssp             CCCCCE--ECSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEE--TTTTEEEECSCCGGGCEEEEEEEES
T ss_pred             CCCCeE--EcCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceecc--CCceEEEEeccchhhceEEEEEEEe
Confidence            345654  467788999999999999866 55799999999999888777553  3446899999999999999999999


Q ss_pred             CCeeeE-EEEEEEEEec
Q psy16852         84 IGGVAT-CSANLIVLEK   99 (579)
Q Consensus        84 ~~g~~~-~~~~~~v~~~   99 (579)
                      ..|... ..+.|.|..+
T Consensus        78 ~~g~~~S~~~~L~V~~~   94 (96)
T d1l6za2          78 PVSVRRSNSIKLDIIFD   94 (96)
T ss_dssp             SSCCEECCCCEEEECCS
T ss_pred             CCCCeEEEeEEEEEEcC
Confidence            988665 4578888654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.3e-14  Score=105.33  Aligned_cols=95  Identities=14%  Similarity=0.171  Sum_probs=68.1

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCC-CCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILP-DNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      +.++..+...++..|+++.|.|.+.|.| .|.+.|+|++..+.. ..+........                        
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~------------------------   59 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEE------------------------   59 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEEC------------------------
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEec------------------------
Confidence            4455556677899999999999999998 589999998765522 11111111000                        


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  533 (579)
                             .......|.|.+++.+|+|.|+|.|.|..|... .++.|.|.
T Consensus        60 -------~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          60 -------KNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             -------SSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             -------CCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence                   011234599999999999999999999999865 47788775

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.8e-14  Score=102.88  Aligned_cols=86  Identities=22%  Similarity=0.390  Sum_probs=66.8

Q ss_pred             eecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee
Q psy16852        410 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET  489 (579)
Q Consensus       410 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~  489 (579)
                      ++.++.+..+..|+.+.|.|.+. .|.|.+.|++++.++..+.+..+.                                
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~--------------------------------   49 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYR--------------------------------   49 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEE--------------------------------
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEE--------------------------------
Confidence            44567888999999999999994 788999999999998766543322                                


Q ss_pred             eeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                       +..++..+.|.|.++..+|+|.|+|.|.|.    ..++.|.|+
T Consensus        50 -~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~a~l~V~   88 (90)
T d1x44a1          50 -IRVEGKKHILIIEGATKADAAEYSVMTTGG----QSSAKLSVD   88 (90)
T ss_dssp             -EEEETTEEEEEEEEECTTTCSEEEEEETTE----EEEEEEEEE
T ss_pred             -EEEeCCccEEEECccccccCEEEEEEEecc----eEEEEEEEE
Confidence             233455677999999999999999999763    455666664

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.4e-15  Score=111.83  Aligned_cols=98  Identities=16%  Similarity=0.311  Sum_probs=71.7

Q ss_pred             CeeecCCCceeeecCCCeEEEEEE-EeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      |.+.....+..+..|+.++|.|.+ .|.|.|.+.|++++..+....++.....  +.                       
T Consensus         3 P~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~--~~-----------------------   57 (104)
T d1nbqa2           3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS--NS-----------------------   57 (104)
T ss_dssp             CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCT--TC-----------------------
T ss_pred             CcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEee--CC-----------------------
Confidence            333333445678899999999998 4899999999999998876654432110  00                       


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                         ........+.|.|.++..+|+|.|+|.|+|..|....++.|+|.
T Consensus        58 ---~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~v~  101 (104)
T d1nbqa2          58 ---SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME  101 (104)
T ss_dssp             ---CCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCE
T ss_pred             ---cEEEeecccceEECCCCcccCcEEEEEEEECCCceEEEEEEEEE
Confidence               01112345669999999999999999999999998887766653

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.6e-14  Score=104.15  Aligned_cols=88  Identities=26%  Similarity=0.387  Sum_probs=73.4

Q ss_pred             cCceeeeCCCCEEEEE---EEEeeCCCeeEEEECCEEecCCCCEEEEEeC-------CEEEEEEcCCCCCCCEEEEEEEE
Q psy16852         13 IQPVVSHQEQPALFTC---KVEGHPLPTMTWQKDGTELHATEHYLITTVE-------SVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C---~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      |.++.+.+|..+.+.|   .+.|.|.|.+.|++||..+..+.........       ....|.|.++..+|+|.|+|.|.
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            5667787888877666   7889999999999999999877766554432       24679999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEecc
Q psy16852         83 NIGGVATCSANLIVLEKE  100 (579)
Q Consensus        83 ~~~g~~~~~~~~~v~~~~  100 (579)
                      |..|....++.|.|.++|
T Consensus        84 N~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          84 NPFGQASASIMAAFMDNP  101 (107)
T ss_dssp             ETTEEEEEEEEECCCSCT
T ss_pred             eCCCEEEEEEEEEEEcCC
Confidence            999999999998887654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2e-14  Score=108.73  Aligned_cols=97  Identities=18%  Similarity=0.335  Sum_probs=67.0

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEE-eeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .|.+..   +..+..|+.+.|.|.+. |.|.+.|+|++++..+.....+....                ..         
T Consensus         5 ~p~~~~---~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~----------------~~---------   56 (110)
T d1f97a2           5 KPTISV---PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRA----------------FM---------   56 (110)
T ss_dssp             CCEEEC---CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBS----------------CS---------
T ss_pred             cceeCC---CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEe----------------ec---------
Confidence            444443   34588999999999985 89999999999999886554322211                00         


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEE--EEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCT--ATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~  533 (579)
                        ..........+.|.|.+++.+|+|.|+|.|.|.+|....+  +.|+|.
T Consensus        57 --~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          57 --NSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             --SSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             --CceEEEeecccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEE
Confidence              0012223445669999999999999999999999987654  455553

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.48  E-value=5.7e-14  Score=100.37  Aligned_cols=74  Identities=9%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             eeeecCCCeEEEEEEEee-CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        417 VIAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      ..+.+|+.++|.|.+.+. |.+.+.|+|+|..+...                                           .
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-------------------------------------------~   46 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-------------------------------------------R   46 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------------------------------------------S
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-------------------------------------------c
Confidence            457899999999999754 56699999998776321                                           1


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEEEe
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLSLL  533 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  533 (579)
                      ....|.|.+++.+|+|.|+|.|.|..|... ..+.|+|+
T Consensus        47 ~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~   85 (88)
T d2fcba2          47 SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQ   85 (88)
T ss_dssp             SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEe
Confidence            233489999999999999999999999754 56788875

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.48  E-value=3.7e-14  Score=100.45  Aligned_cols=74  Identities=15%  Similarity=0.191  Sum_probs=62.5

Q ss_pred             cCCCCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          3 EVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         3 ~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      ++-+|.++.+|....+.+|++++|+|.+.+.+.+ .+.||++|..+....          .+|.|.+++.+|+|.|+|+|
T Consensus         2 ~lPkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~~~~~d~G~Y~C~a   71 (84)
T d1fnla1           2 DLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------SSYFIDAATVNDSGEYRCQT   71 (84)
T ss_dssp             CCCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC----------SEEEESSCCGGGCEEEEEEC
T ss_pred             CCCCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc----------eeeEecCCcccCCEEEEEEc
Confidence            5667888889999999999999999999988876 477889998776443          47999999999999999998


Q ss_pred             EcCCe
Q psy16852         82 TNIGG   86 (579)
Q Consensus        82 ~~~~g   86 (579)
                      .+...
T Consensus        72 ~~s~~   76 (84)
T d1fnla1          72 NLSTL   76 (84)
T ss_dssp             SSSCC
T ss_pred             cCCCc
Confidence            76433

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=5.7e-14  Score=106.18  Aligned_cols=93  Identities=26%  Similarity=0.314  Sum_probs=68.4

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEecCCCCEE--------EEEeCCEEEEEEcCCCCCCCE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHATEHYL--------ITTVESVSTLEIINPTKEDIG   75 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~~~~~~--------~~~~~~~~~L~i~~~~~~d~G   75 (579)
                      +||.+-....+..+.+|++++|.|.+. |.|.+.++|+++|..+.......        .........|.|.+++.+|+|
T Consensus         1 VPP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G   80 (110)
T d1f97a2           1 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG   80 (110)
T ss_dssp             BCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCE
T ss_pred             CCCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCE
Confidence            356555544556789999999999984 78999999999998875443221        223334568999999999999


Q ss_pred             EEEEEEEcCCeeeEEE--EEEEEE
Q psy16852         76 VYTCKATNIGGVATCS--ANLIVL   97 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~~--~~~~v~   97 (579)
                      .|+|.|.|..|....+  +.+.|+
T Consensus        81 ~Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          81 EYYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             EEEEEEECSSSCCEECCCEEEEEE
T ss_pred             EEEEEEEECCCcEEEEEEEEEEEE
Confidence            9999999999977654  455554

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.2e-14  Score=103.35  Aligned_cols=81  Identities=15%  Similarity=0.103  Sum_probs=66.3

Q ss_pred             CcCCCCccccccCceeeeCCCCEEEEEEEEeeCC-CeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      ..--+|.|...++.+.+.+|++++|.|.+.+.+. ++|+|+|+|..+....+.. ...  +.+|.|.+++.+|+|.|+|.
T Consensus         2 ~P~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~-~~~--~~~L~I~~v~~~D~G~Y~C~   78 (93)
T d1n26a1           2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRW-AGM--GRRLLLRSVQLHDSGNYSCY   78 (93)
T ss_dssp             CSSCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEE-EEE--SSEEEECSCCGGGCEEEEEE
T ss_pred             CCCCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEE-ecC--CCEEEECCCChhcCEEEEEE
Confidence            3446899999999999999999999999987665 5899999999887654432 222  24799999999999999999


Q ss_pred             EEcCC
Q psy16852         81 ATNIG   85 (579)
Q Consensus        81 ~~~~~   85 (579)
                      |.|..
T Consensus        79 a~n~~   83 (93)
T d1n26a1          79 RAGRP   83 (93)
T ss_dssp             SSSSC
T ss_pred             ECCcc
Confidence            97653

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.45  E-value=7.3e-14  Score=103.95  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             cCCCceeeecCCCeEEEEEE-EeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        412 KPLKPVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      .+..++.+.+|+.+.|.|.+ .|.|.|.|.|+|+|..+..........                                
T Consensus         9 ~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~--------------------------------   56 (105)
T d1cs6a2           9 EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV--------------------------------   56 (105)
T ss_dssp             SCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE--------------------------------
T ss_pred             CCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeee--------------------------------
Confidence            34456789999999999997 689999999999987664332222211                                


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEE
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTA  528 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  528 (579)
                         ....+.|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus        57 ---~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          57 ---SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             ---CTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             ---ecCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence               11223499999999999999999999999877654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-14  Score=101.96  Aligned_cols=87  Identities=13%  Similarity=0.140  Sum_probs=66.8

Q ss_pred             CCCCeeecCCCceeeecCCCeEEEEEEEeeCC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        405 GEAPKFTKPLKPVIAEAQSPATLKATVTGRPT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       405 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      ..+|.+..++...++.+|+.++|.|.+.|.|+ ++|.|+|++..+....+....                          
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~--------------------------   57 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG--------------------------   57 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE--------------------------
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec--------------------------
Confidence            35788888888899999999999999998775 599999999888655432211                          


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                                  ...+|.|.+++.+|+|.|+|.|.|..+.   ++.|.|
T Consensus        58 ------------~~~~L~I~~v~~~D~G~Y~C~a~n~~~~---t~~l~V   91 (93)
T d1n26a1          58 ------------MGRRLLLRSVQLHDSGNYSCYRAGRPAG---TVHLLV   91 (93)
T ss_dssp             ------------ESSEEEECSCCGGGCEEEEEESSSSCSC---EEEEEE
T ss_pred             ------------CCCEEEECCCChhcCEEEEEEECCcccc---EEEEEE
Confidence                        1235999999999999999999876543   334544

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.45  E-value=1.4e-14  Score=104.02  Aligned_cols=84  Identities=19%  Similarity=0.278  Sum_probs=66.0

Q ss_pred             eecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee
Q psy16852        410 FTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET  489 (579)
Q Consensus       410 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~  489 (579)
                      +..++.+..+.+|+++.|.|.+ +.|.|.+.|+++|..+..+.++.+..                               
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~-------------------------------   51 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIE-------------------------------   51 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEE-------------------------------
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEe-------------------------------
Confidence            4566788899999999999998 58999999999999998887776654                               


Q ss_pred             eeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                          ++..+.|.|.++..+|+|.|+|.|.|..+    ++.|.|.
T Consensus        52 ----~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----sa~l~V~   87 (89)
T d1tiua_          52 ----DGKKHILILHNCQLGMTGEVSFQAANAKS----AANLKVK   87 (89)
T ss_dssp             ----CSSCEEEECCSCCSCCCSEECCBCSSCBC----CEEEEEE
T ss_pred             ----eceeEEEEEcCCChhcCEEEEEEECceEE----EEEEEEE
Confidence                34455688888888888889998877544    3555553

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.6e-13  Score=101.78  Aligned_cols=90  Identities=20%  Similarity=0.321  Sum_probs=70.8

Q ss_pred             CCccccccCc-eeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEE---eC---------CEEEEEEcCCCCC
Q psy16852          6 APRFIEKIQP-VVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT---VE---------SVSTLEIINPTKE   72 (579)
Q Consensus         6 ~p~~~~~p~~-~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~---~~---------~~~~L~i~~~~~~   72 (579)
                      +|.|+.++.. +.+..|++++|.|.+.|.|.+.+.|++||..+..........   ..         ..+.|+|.+++.+
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            4677765544 778899999999999999999999999999886554322211   11         1368999999999


Q ss_pred             CCE-EEEEEEEcCCeeeEEEEEEE
Q psy16852         73 DIG-VYTCKATNIGGVATCSANLI   95 (579)
Q Consensus        73 d~G-~Y~C~~~~~~g~~~~~~~~~   95 (579)
                      |.| .|+|.|.|..|.....+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999887766654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.7e-13  Score=97.05  Aligned_cols=74  Identities=11%  Similarity=0.108  Sum_probs=57.8

Q ss_pred             eeeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        417 VIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      ..+.+|+.++|.|.+.+.+ ..++.|+|+|..+....                                           
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-------------------------------------------   46 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------------------------------------------   46 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------------------------------------------
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-------------------------------------------
Confidence            4578999999999997664 45999999998874332                                           


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEEEe
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLSLL  533 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  533 (579)
                      ..+.|.|.+++.+|+|.|+|.|.|..|... ..+.|+|+
T Consensus        47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~   85 (89)
T d1f2qa2          47 ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI   85 (89)
T ss_dssp             CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEE
Confidence            123488999999999999999999988643 55667654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.8e-13  Score=99.33  Aligned_cols=88  Identities=18%  Similarity=0.308  Sum_probs=65.0

Q ss_pred             CCCeeecCCCc-eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCC-CeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        406 EAPKFTKPLKP-VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDN-GHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       406 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      .+|.|...+.+ ..+.+|+.+.|.|.+. .|.|.+.|+++|..|..+. ++.+.                          
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~--------------------------   56 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFE--------------------------   56 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEE--------------------------
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeee--------------------------
Confidence            46677766654 5789999999999985 6999999999999987654 33332                          


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                               ..+..+.|.|.++..+|+|.|+|.|.|    ...++.|.|+
T Consensus        57 ---------~~~~~~~L~I~~~~~~D~G~Y~c~a~n----~~~s~~l~V~   93 (94)
T d1pd6a_          57 ---------SIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFVK   93 (94)
T ss_dssp             ---------EETTEEEEEECSCSSSSCEEEEEEETT----EEECCEEEEE
T ss_pred             ---------ccCCeEEeecCCCCceecEEEEEEEee----EEEEEEEEEE
Confidence                     234456688888888889999999866    3455566653

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.6e-15  Score=110.64  Aligned_cols=92  Identities=23%  Similarity=0.323  Sum_probs=71.5

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCEEE-------EEeCCEEEEEEcCCCCCCCEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHYLI-------TTVESVSTLEIINPTKEDIGV   76 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~~~-------~~~~~~~~L~i~~~~~~d~G~   76 (579)
                      +||.+...+.+..+.+|+.++|.|.+ .|.|.+.+.|+|+|..+........       ......+.|.|.+++.+|+|.
T Consensus         1 VPP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   80 (104)
T d1nbqa2           1 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE   80 (104)
T ss_dssp             BCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCC
T ss_pred             CCCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcE
Confidence            57777776777889999999999998 4789999999999998755432211       112234679999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEE
Q psy16852         77 YTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        77 Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      |+|.|.|..|....+..+.|
T Consensus        81 Y~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          81 YSCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EEEEEECSSSCCEECCCBCC
T ss_pred             EEEEEEECCCceEEEEEEEE
Confidence            99999999998776554443

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=98.45  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=58.4

Q ss_pred             ceeeecCCCeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        416 PVIAEAQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ...+.+|++++|.|.+.+ .|.+++.|+|||..+...                                           
T Consensus        11 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-------------------------------------------   47 (89)
T d1fnla2          11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-------------------------------------------   47 (89)
T ss_dssp             CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-------------------------------------------
T ss_pred             CCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee-------------------------------------------
Confidence            345789999999999975 566699999998776321                                           


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeEE-EEEEEEEe
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSVT-CTATLSLL  533 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  533 (579)
                      ...+.|.|.+++.+|+|.|+|.|.|..|... ..+.|+|+
T Consensus        48 ~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          48 HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT   87 (89)
T ss_dssp             EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEE
Confidence            1123488999999999999999999998754 56777765

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6e-14  Score=98.79  Aligned_cols=80  Identities=21%  Similarity=0.322  Sum_probs=63.1

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      +|.|..+|....+.+|++++|+|.+.+.+.+ .+.|+++|..+....          ..|.|.+++.+|+|.|+|+|.+.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~v~~~d~G~Y~C~a~~s   70 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQHQQV   70 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEECTTS
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc----------ceeEECCCChhhCCcEEEEecCC
Confidence            5889999999999999999999999888776 577899998876543          46999999999999999999775


Q ss_pred             CeeeEEEEEEEEE
Q psy16852         85 GGVATCSANLIVL   97 (579)
Q Consensus        85 ~g~~~~~~~~~v~   97 (579)
                      .+  +..+.|.|+
T Consensus        71 ~~--S~~v~l~V~   81 (82)
T d1f2qa1          71 NE--SEPVYLEVF   81 (82)
T ss_dssp             SC--CCCEEEEEE
T ss_pred             CC--cccEEEEEE
Confidence            44  334555553

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.40  E-value=8.5e-14  Score=98.88  Aligned_cols=79  Identities=19%  Similarity=0.286  Sum_probs=63.8

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCC-eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLP-TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      +|.+...|....|.+|++++|+|.+.+.+.+ .+.|++||..+....          ..|.|.+++.+|+|.|+|++.|.
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------~~l~i~~v~~~dsG~Y~C~a~ns   73 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQT   73 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEECTTS
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------cceEEeeccccCCcEEEEECCCC
Confidence            4567778899999999999999999887765 699999999886543          46899999999999999999775


Q ss_pred             CeeeEEEEEEEE
Q psy16852         85 GGVATCSANLIV   96 (579)
Q Consensus        85 ~g~~~~~~~~~v   96 (579)
                      .++  ..+.|.|
T Consensus        74 ~~S--~~v~l~V   83 (85)
T d2fcba1          74 SLS--DPVHLTV   83 (85)
T ss_dssp             BCC--CCEEEEE
T ss_pred             ccc--ccEEEEE
Confidence            443  3345555

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.4e-14  Score=107.37  Aligned_cols=97  Identities=22%  Similarity=0.213  Sum_probs=71.6

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      ||.+. .+....+.+|+.+.|.|.+.|.| .+.+.|++++..+..+....+..           .               
T Consensus         7 Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~-----------~---------------   59 (115)
T d2crya1           7 PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTV-----------E---------------   59 (115)
T ss_dssp             SCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEE-----------E---------------
T ss_pred             CCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEee-----------e---------------
Confidence            56665 34556788999999999999865 55899999998886543211110           0               


Q ss_pred             cceeeeeeeCCeeEEEEeeccccc-ceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQ-IGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                         .....++..+.|.|.++..+| +|.|+|.|.|.+|.++..+.|.|+
T Consensus        60 ---~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          60 ---TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             ---EEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             ---eeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEE
Confidence               011112334679999999998 699999999999999999999876

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.8e-14  Score=105.67  Aligned_cols=100  Identities=15%  Similarity=0.220  Sum_probs=68.7

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      ++.+........+.+|++++|.|.+.|.|.|.+.|++++..+..........            .....+  .       
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~------------~~~~~~--~-------   62 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKI------------TASYED--R-------   62 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEE------------CTTTTT--T-------
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeecccee------------eccccc--e-------
Confidence            3444445566779999999999999999999999999764432211100000            000000  0       


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                          .  ....+.|.|.+++.+|+|.|+|.|.|..|.....+.|+|.
T Consensus        63 ----~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          63 ----V--TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             ----C--EEETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECC
T ss_pred             ----e--eecCceEEEecccccceeeEEEEEEECCCCEEEEEEEEEE
Confidence                0  0012469999999999999999999999999888888764

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.1e-13  Score=102.79  Aligned_cols=99  Identities=18%  Similarity=0.232  Sum_probs=67.4

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecc
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASST  487 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~  487 (579)
                      |.+..+.....+.+|++++|.|.+.|.|.|.+.|++++......    ...   +.    .+. ....+.          
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~----~~~---~~----~~~-~~~~~~----------   59 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTAL----VCY---NS----QIT-APYADR----------   59 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEE----EEE---TT----EEC-GGGTTT----------
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceee----ecc---cc----ccc-cceeeE----------
Confidence            44555666678999999999999999999999999854322100    000   00    000 000010          


Q ss_pred             eeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        488 ETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       488 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                           .....++|+|.++..+|+|.|+|.|.|..|.....+.|+|.
T Consensus        60 -----~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          60 -----VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             -----EEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEE
T ss_pred             -----EEecCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEE
Confidence                 01123469999999999999999999999998888777764

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.4e-14  Score=105.89  Aligned_cols=88  Identities=20%  Similarity=0.377  Sum_probs=67.2

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCE----------EEEEeCCEEEEEEcCCCCCCCEE
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHY----------LITTVESVSTLEIINPTKEDIGV   76 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~----------~~~~~~~~~~L~i~~~~~~d~G~   76 (579)
                      +.+...+.++.+.+|++++|.|.+.|.|.|.+.|++++..+......          +....  ..+|.|.+++.+|+|.
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~   82 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL--PTGITFKSVTREDTGT   82 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE--TTEEECSCCCTTSCSE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeec--CceEEEecccccceee
Confidence            34555677899999999999999999999999999976544221110          00111  2479999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEE
Q psy16852         77 YTCKATNIGGVATCSANLIV   96 (579)
Q Consensus        77 Y~C~~~~~~g~~~~~~~~~v   96 (579)
                      |+|.|.|..|.....+.+.|
T Consensus        83 Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          83 YTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEEEEEETTSSCEECCEEEC
T ss_pred             EEEEEEECCCCEEEEEEEEE
Confidence            99999999998887766655

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=7.3e-14  Score=102.61  Aligned_cols=86  Identities=20%  Similarity=0.255  Sum_probs=69.3

Q ss_pred             ccCceeeeCCCCEEEEEEEE-eeCCCeeEEEECCEEecC--CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeee
Q psy16852         12 KIQPVVSHQEQPALFTCKVE-GHPLPTMTWQKDGTELHA--TEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVA   88 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~-~~~~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   88 (579)
                      .|..+.+.+|+.+.|.|.+. +.+.+.|.|||+|..+..  ....++....  .+|.|.+++.+|+|.|+|.|.|..|..
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~   85 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCL   85 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET--TEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC--CEEEeccceecCCEEEEEEEECCCCeE
Confidence            45668899999999999885 567889999999876542  2223333333  479999999999999999999999999


Q ss_pred             EEEEEEEEEec
Q psy16852         89 TCSANLIVLEK   99 (579)
Q Consensus        89 ~~~~~~~v~~~   99 (579)
                      ..++.|.|++.
T Consensus        86 ~~~~~L~V~~~   96 (101)
T d1iray1          86 RIKISAKFVEN   96 (101)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEEeC
Confidence            99999999864

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.7e-13  Score=98.60  Aligned_cols=79  Identities=15%  Similarity=0.177  Sum_probs=61.4

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      ...+.+|+++.|.|.+.| |+|.+.|+++|..+..........                                     
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~-------------------------------------   47 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLM-------------------------------------   47 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCT-------------------------------------
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecc-------------------------------------
Confidence            456889999999999997 778999999998886543221110                                     


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ..+.|.|.++..+|+|.|+|.|.|..|..+.+..|.+
T Consensus        48 ~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~   84 (92)
T d1olza1          48 GRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK   84 (92)
T ss_dssp             TTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             eeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEE
Confidence            1123999999999999999999999998776666554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=4.6e-13  Score=99.41  Aligned_cols=90  Identities=19%  Similarity=0.266  Sum_probs=68.0

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC----------CCCEEEEEeCCEEEEEEcCCCCCCCE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA----------TEHYLITTVESVSTLEIINPTKEDIG   75 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~----------~~~~~~~~~~~~~~L~i~~~~~~d~G   75 (579)
                      +|.+..++..+.+.+|++++|.|.+.|.|.|.+.|++++.....          ....+....  .++|+|.+++.+|+|
T Consensus         1 k~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~tL~I~~v~~~D~G   78 (102)
T d1f97a1           1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS--SSGITFSSVTRKDNG   78 (102)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE--TTEEEESCCCGGGCE
T ss_pred             CCCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEec--CCEEEEeECCccCCE
Confidence            46677778889999999999999999999999999985432210          000011111  247999999999999


Q ss_pred             EEEEEEEcCCeeeEEEEEEEEE
Q psy16852         76 VYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      .|+|.|.|..|.....+.+.|.
T Consensus        79 ~Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          79 EYTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEEEECCCCEEEEEEEEEE
Confidence            9999999999987776666554

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.2e-13  Score=100.42  Aligned_cols=91  Identities=13%  Similarity=0.077  Sum_probs=72.4

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEe-eCCC--eeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLP--TMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCK   80 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (579)
                      ..||++...|.+..+.+|+.++|+|.+.| .|.+  .+.|+++++.+.....   ......+.|.|.....+|+|.|+|+
T Consensus         2 ~~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~   78 (103)
T d1iama1           2 WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCR   78 (103)
T ss_dssp             BCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEE
T ss_pred             CCCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEE
Confidence            57899999999999999999999999986 4544  6889999998854321   1112357899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEE
Q psy16852         81 ATNIGGVATCSANLIVL   97 (579)
Q Consensus        81 ~~~~~g~~~~~~~~~v~   97 (579)
                      |.|..|....+..+.+.
T Consensus        79 A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          79 TELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEEECGGGTSCEEEEEC
T ss_pred             EEeCCCCccCeEeeeEc
Confidence            99988877666666653

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.36  E-value=8.6e-13  Score=93.21  Aligned_cols=74  Identities=18%  Similarity=0.170  Sum_probs=57.5

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      ..|.+...+...++.+|+.++|.|.+.|.|.+ .+.|++++..+..+                                 
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~---------------------------------   50 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------------------------------   50 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS---------------------------------
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec---------------------------------
Confidence            35777777777889999999999999999988 46678887665321                                 


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                                  ...|.|.+++.+|+|.|+|.|.|..++.
T Consensus        51 ------------~~~l~i~~~~~~d~G~Y~C~a~~s~~S~   78 (84)
T d1fnla1          51 ------------ASSYFIDAATVNDSGEYRCQTNLSTLSD   78 (84)
T ss_dssp             ------------CSEEEESSCCGGGCEEEEEECSSSCCCC
T ss_pred             ------------ceeeEecCCcccCCEEEEEEccCCCccc
Confidence                        2238888888889999999988766544

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.6e-12  Score=95.24  Aligned_cols=72  Identities=18%  Similarity=0.294  Sum_probs=57.5

Q ss_pred             ceeeecCCCeEEEE------EEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee
Q psy16852        416 PVIAEAQSPATLKA------TVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET  489 (579)
Q Consensus       416 ~~~~~~g~~~~l~C------~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~  489 (579)
                      .+.+..|....|.|      .+.+.|.|.|.|+++|.+|..+.++....                               
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~-------------------------------   56 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV-------------------------------   56 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE-------------------------------
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec-------------------------------
Confidence            35678899999999      56789999999999999997654433211                               


Q ss_pred             eeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE
Q psy16852        490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT  525 (579)
Q Consensus       490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  525 (579)
                             ...|.|.++..+|+|.|+|.|.|..|...
T Consensus        57 -------~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2          57 -------KDRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             -------TTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             -------CCEEEEcccccccCcEEEEEEEECcCCEE
Confidence                   12399999999999999999999887443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.9e-13  Score=98.04  Aligned_cols=89  Identities=13%  Similarity=0.162  Sum_probs=68.2

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEe-eCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTG-RPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      |+.+...+.+..+.+|+.++|+|.+.| .|.|  ++.|++++..+.....                              
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~------------------------------   53 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA------------------------------   53 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC------------------------------
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc------------------------------
Confidence            666666667777899999999999986 5665  6889999988732210                              


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                              ......++|+|..+..+|+|.|+|+|.|.+|....+..+.+.
T Consensus        54 --------~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          54 --------VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTS   95 (103)
T ss_dssp             --------CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEEC
T ss_pred             --------ccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeEc
Confidence                    011234569999999999999999999999988777777753

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.33  E-value=6.8e-13  Score=94.09  Aligned_cols=79  Identities=18%  Similarity=0.218  Sum_probs=61.2

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEee
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAS  485 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~  485 (579)
                      .|.+...+....+.+|+.++|.|.+.+.|.+ .+.|+++|..+....                                 
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~---------------------------------   50 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT---------------------------------   50 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC---------------------------------
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc---------------------------------
Confidence            4566666666789999999999999998877 789999998874321                                 


Q ss_pred             cceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        486 STETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       486 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                                  +.|.|.+++.+|+|.|+|.|.|..++..  +.|.|
T Consensus        51 ------------~~l~i~~v~~~dsG~Y~C~a~ns~~S~~--v~l~V   83 (85)
T d2fcba1          51 ------------QPSYRFKANNNDSGEYTCQTGQTSLSDP--VHLTV   83 (85)
T ss_dssp             ------------SSEEEEECCGGGCEEEEEECTTSBCCCC--EEEEE
T ss_pred             ------------cceEEeeccccCCcEEEEECCCCccccc--EEEEE
Confidence                        1288888999999999999988766554  34443

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.4e-13  Score=96.97  Aligned_cols=81  Identities=19%  Similarity=0.206  Sum_probs=62.2

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEE
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGGVATCSA   92 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~   92 (579)
                      .+...+.+|+++.|.|.+.+ +.+.+.|+++|..+........  .....+|.|.+++.+|+|.|+|.|.|..|......
T Consensus         4 ~~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1           4 YRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYG--LMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             EEEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBC--CTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             hhheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeee--cceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            35678999999999999987 6679999999998865432211  12234699999999999999999999877665544


Q ss_pred             EEEE
Q psy16852         93 NLIV   96 (579)
Q Consensus        93 ~~~v   96 (579)
                      .+.+
T Consensus        81 ~l~~   84 (92)
T d1olza1          81 VVAK   84 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.8e-13  Score=97.00  Aligned_cols=82  Identities=10%  Similarity=0.208  Sum_probs=64.6

Q ss_pred             CceeeecCCCeEEEEEEE-eeCCCeEEEeeCCEEcCCCC--CeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        415 KPVIAEAQSPATLKATVT-GRPTPSICWYRGKEEILPDN--GHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      ......+|+.+.|.|.+. +.|.++|.|+++|..+....  +..+..                                 
T Consensus        10 ~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~---------------------------------   56 (101)
T d1iray1          10 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ---------------------------------   56 (101)
T ss_dssp             CCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE---------------------------------
T ss_pred             cEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec---------------------------------
Confidence            345678899999999885 67889999999986553222  111111                                 


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                          ..++|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        57 ----~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~   94 (101)
T d1iray1          57 ----HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFV   94 (101)
T ss_dssp             ----ETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ----cCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEE
Confidence                12459999999999999999999999999999999986

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-12  Score=92.11  Aligned_cols=78  Identities=18%  Similarity=0.134  Sum_probs=56.5

Q ss_pred             CeeecCCCceeeecCCCeEEEEEEEeeCCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        408 PKFTKPLKPVIAEAQSPATLKATVTGRPTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       408 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      |.+...+....+.+|+.++|.|.+.+.|.+ .+.|++++..+...                                   
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------   46 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-----------------------------------   46 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-----------------------------------
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc-----------------------------------
Confidence            555555666779999999999999999988 56678888776432                                   


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                                ...|.|.+++.+|+|.|+|.|.|..++..  +.|.|
T Consensus        47 ----------~~~l~i~~v~~~d~G~Y~C~a~~s~~S~~--v~l~V   80 (82)
T d1f2qa1          47 ----------NSSLNIVNAKFEDSGEYKCQHQQVNESEP--VYLEV   80 (82)
T ss_dssp             ----------SSEEEECSCCGGGCEEEEEECTTSSCCCC--EEEEE
T ss_pred             ----------cceeEECCCChhhCCcEEEEecCCCCccc--EEEEE
Confidence                      12388889999999999999988766553  45554

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-13  Score=104.02  Aligned_cols=96  Identities=23%  Similarity=0.308  Sum_probs=74.7

Q ss_pred             CcCCCCccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEECCEEecCC--CCEEEEEe--CC--EEEEEEcCCCCCC-
Q psy16852          2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKDGTELHAT--EHYLITTV--ES--VSTLEIINPTKED-   73 (579)
Q Consensus         2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~g~~~~~~--~~~~~~~~--~~--~~~L~i~~~~~~d-   73 (579)
                      ....||.| ..+..+.+.+|+.+.|.|.+.+. |.+.+.|++++..+...  .++.+...  ..  .+.|.|.++..+| 
T Consensus         3 ~V~~Pp~i-~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~   81 (115)
T d2crya1           3 TVNGPPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADF   81 (115)
T ss_dssp             CCCSSCCE-EEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHH
T ss_pred             EEecCCEE-ecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcC
Confidence            34567766 46778889999999999999885 45589999999988643  33433322  22  3579999999999 


Q ss_pred             CEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852         74 IGVYTCKATNIGGVATCSANLIVLE   98 (579)
Q Consensus        74 ~G~Y~C~~~~~~g~~~~~~~~~v~~   98 (579)
                      +|.|+|.|.|..|..+..+.|.|..
T Consensus        82 ~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          82 QTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             HSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             CeEEEEEEEECCCeEEEEEEEEEEC
Confidence            7999999999999998888887754

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.8e-12  Score=92.15  Aligned_cols=68  Identities=25%  Similarity=0.360  Sum_probs=56.3

Q ss_pred             eeeeCCCCEEEEE------EEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         16 VVSHQEQPALFTC------KVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        16 ~~v~~G~~~~l~C------~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      ..+..|+...|.|      .+.+.|.|.|.|++||+.+..+.... ...+  ..|.|.+++.+|+|.|+|.|.|..|
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~-~~~~--~~L~I~~v~~~D~G~Y~C~a~n~~~   82 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-SGVK--DRLIVMNVAEKHRGNYTCHASYTYL   82 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSE-EEET--TEEEESSCCGGGCEEEEEEEEEEET
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEE-EecC--CEEEEcccccccCcEEEEEEEECcC
Confidence            5688999999999      56788889999999999997655432 2233  3699999999999999999998665

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.7e-13  Score=97.91  Aligned_cols=91  Identities=14%  Similarity=0.120  Sum_probs=63.8

Q ss_pred             CCccc-cccCceeeeCCCCEEEEEEEEe-e--CCCeeEEEECCEEecCCCCEEEEEe--CCEEEEEEcCCCCCCCEEEEE
Q psy16852          6 APRFI-EKIQPVVSHQEQPALFTCKVEG-H--PLPTMTWQKDGTELHATEHYLITTV--ESVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus         6 ~p~~~-~~p~~~~v~~G~~~~l~C~~~~-~--~~~~v~W~~~g~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      ||.+. ..+.+..+.+|+.++|+|.+.| .  |.+.++||++|+.+...........  .....|.|.....+|+|.|+|
T Consensus         1 PP~~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC   80 (106)
T d1zxqa1           1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSC   80 (106)
T ss_dssp             CCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEE
T ss_pred             CCcCCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEE
Confidence            45544 4778888999999999999976 3  3458999999998854322111111  123568888888889999999


Q ss_pred             EEEcCCeeeEEEEEEEE
Q psy16852         80 KATNIGGVATCSANLIV   96 (579)
Q Consensus        80 ~~~~~~g~~~~~~~~~v   96 (579)
                      +|.|..+.........+
T Consensus        81 ~A~n~~~~~~~~~~~~~   97 (106)
T d1zxqa1          81 LAVLDLMSRGGNIFHKH   97 (106)
T ss_dssp             EEEEECGGGTCCEEEEE
T ss_pred             EEEecCCCCCCeeEecc
Confidence            99998765444444444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.22  E-value=1.8e-12  Score=96.75  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=60.9

Q ss_pred             ceeeecCCCeEEEEEE-EeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        416 PVIAEAQSPATLKATV-TGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      +.++.+|+.++|.|.+ .|.|.|.+.|++++..+..........                               .....
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~-------------------------------~~~~~   59 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFD-------------------------------RRITA   59 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCC-------------------------------TTEEE
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeee-------------------------------eeecc
Confidence            3457799999999996 899999999999876654332211100                               00011


Q ss_pred             CCeeEEEEeecccccce---eEEEEEEeCCeeEEEEEEEEE
Q psy16852        495 GNRSVLLISKITRDQIG---DVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G---~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ...++|.|.+++.+|+|   .|+|.|.|.+|.......+.+
T Consensus        60 ~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~~~~~  100 (111)
T d1biha2          60 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE  100 (111)
T ss_dssp             CTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEE
T ss_pred             ccccccEEeeeEeeccCCceEEEEEEEeCCCCceEEEEEEE
Confidence            22344999999888877   699999999998877665554

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.9e-12  Score=94.33  Aligned_cols=87  Identities=14%  Similarity=0.127  Sum_probs=61.2

Q ss_pred             CCCceeeecCCCeEEEEEEEe-eC--CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee
Q psy16852        413 PLKPVIAEAQSPATLKATVTG-RP--TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET  489 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g-~p--~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~  489 (579)
                      .+.+..+.+|+.++|+|.+.| .|  .+++.|++++..+..+....+..                               
T Consensus         8 ~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~-------------------------------   56 (106)
T d1zxqa1           8 TLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAP-------------------------------   56 (106)
T ss_dssp             EEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTT-------------------------------
T ss_pred             cCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEee-------------------------------
Confidence            445567889999999999986 44  44899999999874332111100                               


Q ss_pred             eeeeeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                        ......++|+|.....+|.|.|+|+|.|..|.......+.+
T Consensus        57 --~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~~~   97 (106)
T d1zxqa1          57 --APQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH   97 (106)
T ss_dssp             --CTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTCCEEEEE
T ss_pred             --cccceeEEEEEeeehhcCCcEEEEEEEecCCCCCCeeEecc
Confidence              01123456888888889999999999999887655555554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.11  E-value=4.1e-12  Score=94.83  Aligned_cols=82  Identities=21%  Similarity=0.258  Sum_probs=60.7

Q ss_pred             ceeeeCCCCEEEEEEE-EeeCCCeeEEEECCEEecCCCCE----EEEEeCCEEEEEEcCCCCCCCE---EEEEEEEcCCe
Q psy16852         15 PVVSHQEQPALFTCKV-EGHPLPTMTWQKDGTELHATEHY----LITTVESVSTLEIINPTKEDIG---VYTCKATNIGG   86 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~-~~~~~~~v~W~~~g~~~~~~~~~----~~~~~~~~~~L~i~~~~~~d~G---~Y~C~~~~~~g   86 (579)
                      +..+.||++++|.|.+ .|.|.|.+.|+|++..+......    .........+|.|.+++.+|+|   .|+|.|.|..|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence            4567899999999997 89999999999987665322111    0112223467999999998876   79999999999


Q ss_pred             eeEEEEEEEE
Q psy16852         87 VATCSANLIV   96 (579)
Q Consensus        87 ~~~~~~~~~v   96 (579)
                      .......+.+
T Consensus        91 ~~~~~~~~~~  100 (111)
T d1biha2          91 DEEVVLVEYE  100 (111)
T ss_dssp             SSCEEEEEEE
T ss_pred             CceEEEEEEE
Confidence            7776554444

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=6.5e-10  Score=85.80  Aligned_cols=89  Identities=19%  Similarity=0.197  Sum_probs=63.1

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeC---CCeeEEEECCEE-----------ecC------CCCEEEEE---eCCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHP---LPTMTWQKDGTE-----------LHA------TEHYLITT---VESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~---~~~v~W~~~g~~-----------~~~------~~~~~~~~---~~~~~~L~i   66 (579)
                      +.+.+++.+.+|++++|.|.+.+..   ...+.|++.+..           ...      ..+.....   ..++.+|+|
T Consensus         6 ~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   85 (126)
T d1pkoa_           6 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRI   85 (126)
T ss_dssp             ECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEE
T ss_pred             ECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEE
Confidence            3345569999999999999986432   236999986431           110      11222221   123689999


Q ss_pred             cCCCCCCCEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852         67 INPTKEDIGVYTCKATNIGGVATCSANLIVLE   98 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~~   98 (579)
                      .+++.+|+|.|+|.+.+..+.....+.|.|.+
T Consensus        86 ~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          86 QNVRFSDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEchhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            99999999999999999888888888888864

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.4e-11  Score=88.06  Aligned_cols=75  Identities=19%  Similarity=0.225  Sum_probs=56.8

Q ss_pred             CceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecC----------CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852         14 QPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHA----------TEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~----------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +.+.+..|++|+|.|... .|.+.|.|++++..+..          ....+......+.+|+|.+++.+|+|.|+|.+.+
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            457899999999999864 57779999999877531          1112223344457899999999999999999988


Q ss_pred             CCeeeE
Q psy16852         84 IGGVAT   89 (579)
Q Consensus        84 ~~g~~~   89 (579)
                      ..++..
T Consensus        82 ~~~t~~   87 (93)
T d1ccza1          82 ITDTMK   87 (93)
T ss_dssp             CCSCEE
T ss_pred             CCcEEE
Confidence            766554

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.2e-11  Score=87.40  Aligned_cols=89  Identities=11%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      .+.+..|++++|.|.+. .|.+.|.|++++..+..........           .. .             ...++..+.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~-----------~~-~-------------~~~~~~~~~   57 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRA-----------FS-S-------------FKNRVYLDT   57 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEE-----------CG-G-------------GTTSEEECT
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceee-----------CC-C-------------ccceEEEcC
Confidence            35678899999999875 7888999999987663221111111           00 0             011223344


Q ss_pred             CeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEE
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSL  532 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  532 (579)
                      ..+.|+|.+++.+|+|.|+|.|.|..++..  +.|+|
T Consensus        58 ~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~--~~l~V   92 (93)
T d1ccza1          58 VSGSLTIYNLTSSDEDEYEMESPNITDTMK--FFLYV   92 (93)
T ss_dssp             TTCCEEECSCCGGGCEEEEEECTTCCSCEE--EEEEE
T ss_pred             CeeEEEEEecChhhCEEEEEEEECCCcEEE--EEEEE
Confidence            556799999999999999999999877654  55544

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=4.5e-10  Score=86.71  Aligned_cols=104  Identities=16%  Similarity=0.248  Sum_probs=61.7

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeC---CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE  488 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~  488 (579)
                      .+..++.+..|++++|.|.+.+..   ...+.|++.+...     ....+  ..+..      ........|.     .+
T Consensus         7 ~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~-----~~~~~--~~~~~------~~~~~~~~~~-----~r   68 (126)
T d1pkoa_           7 GPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSR-----VVHLY--RNGKD------QDAEQAPEYR-----GR   68 (126)
T ss_dssp             CCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CC-----EEEEE--ETTEE------CGGGSCSTTT-----TS
T ss_pred             CCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcc-----eEEEE--Eeccc------cccccccccc-----ee
Confidence            344557788999999999986432   2368999864211     00000  00000      0000000010     00


Q ss_pred             eeee---eeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        489 TKIM---TDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       489 ~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                      ..+.   .......|+|.+++.+|+|.|+|.+.+..|.....+.|+|.
T Consensus        69 ~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          69 TELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             EEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEeeccccCCeEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            0111   12235679999999999999999999999999888888874

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.00  E-value=9.4e-10  Score=80.71  Aligned_cols=76  Identities=17%  Similarity=0.255  Sum_probs=58.6

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE--Ee----------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT--EL----------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~--~~----------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      .++..|..+.+.+|++|+|.|.........+.||+.  |.  .+          ....++.....+....|+|.+++.+|
T Consensus         2 qltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~D   81 (106)
T d1a0ql1           2 ELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPED   81 (106)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             ceECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccC
Confidence            356678999999999999999986555556999982  11  11          12346667777778999999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|.+..
T Consensus        82 sA~YyCa~~~   91 (106)
T d1a0ql1          82 IATYYCLQYY   91 (106)
T ss_dssp             CSEEEEEECS
T ss_pred             CEeEEEEEeC
Confidence            9999998754

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.96  E-value=1.4e-09  Score=79.68  Aligned_cols=76  Identities=14%  Similarity=0.250  Sum_probs=58.3

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE------------ecCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE------------LHATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~------------~~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      .++..|..+.+.+|++|+|.|.........+.|||.  |..            -....++.....+....|+|.+++.+|
T Consensus         3 ~ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (106)
T d1i8ka_           3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (106)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcccc
Confidence            356779999999999999999886555557999972  221            113356666666778999999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (106)
T d1i8ka_          83 VGDYYCLQSF   92 (106)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEeEecCc
Confidence            9999998643

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.93  E-value=2.2e-09  Score=79.01  Aligned_cols=76  Identities=14%  Similarity=0.258  Sum_probs=59.1

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE------------ecCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE------------LHATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~------------~~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      +++..|..+.+.+|++|+|+|.........+.|||.  |..            -....++..........|.|.+++.+|
T Consensus         3 ~~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1j1pl_           3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCC
Confidence            356678999999999999999986544557999982  111            112357777777888999999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|.+.+
T Consensus        83 sa~YyCa~~~   92 (107)
T d1j1pl_          83 FGMYFCQQAN   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEcCC
Confidence            9999997653

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.93  E-value=1.9e-09  Score=78.70  Aligned_cols=76  Identities=16%  Similarity=0.246  Sum_probs=58.1

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEE---e---------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTE---L---------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      +++..|..+.+.+|++|+|+|.........+.|||  .|..   +         ....++..........|.|.+++.+|
T Consensus         3 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1c5cl1           3 QLTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccC
Confidence            35567899999999999999998765555799998  2221   1         12345556666678899999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (107)
T d1c5cl1          83 FADYYCLQYA   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CeEEEEecCc
Confidence            9999997653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.92  E-value=2.7e-09  Score=78.61  Aligned_cols=76  Identities=14%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE---Ee---------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT---EL---------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~---~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      +++..|..+.+.+|++|+|.|.........+.|||.  |.   .+         ....++..........|+|.+++.+|
T Consensus         3 ~~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1kcvl1           3 VMTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADD   82 (107)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecC
Confidence            356779999999999999999987655557999982  11   11         12456667777788999999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|.+..
T Consensus        83 Sa~YyCa~~~   92 (107)
T d1kcvl1          83 DADYYCGQSY   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEEecC
Confidence            9999998643

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.91  E-value=3.9e-09  Score=77.30  Aligned_cols=75  Identities=13%  Similarity=0.218  Sum_probs=58.5

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC-----EEe---------cCCCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG-----TEL---------HATEHYLITTVESVSTLEIINPTKEDI   74 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g-----~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~   74 (579)
                      ++..|..+.+.+|++|+|.|.........+.||+..     +.+         ....++..........|.|.+++.+|+
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            456799999999999999999865555579999821     111         123467777777788999999999999


Q ss_pred             EEEEEEEEc
Q psy16852         75 GVYTCKATN   83 (579)
Q Consensus        75 G~Y~C~~~~   83 (579)
                      |.|.|.+..
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999998754

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.90  E-value=1.5e-09  Score=79.63  Aligned_cols=76  Identities=17%  Similarity=0.290  Sum_probs=57.8

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE---Ee---------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT---EL---------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~---~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      +++..|..+.+.+|++|+|.|...+.....+.|||.  |.   .+         ....++.....+....|+|.+++.+|
T Consensus         3 ~~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1ospl1           3 QMSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTED   82 (107)
T ss_dssp             CEECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGG
T ss_pred             CEEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccccc
Confidence            355679999999999999999986655557999982  11   11         12346666655667899999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (107)
T d1ospl1          83 VATYFCQQYW   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CCcEEEeecc
Confidence            9999998753

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.89  E-value=3.3e-09  Score=77.85  Aligned_cols=75  Identities=16%  Similarity=0.308  Sum_probs=58.9

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE---Ee---------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT---EL---------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~---~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      .++..|..+.+.+|++|+|+|.........+.|||.  |.   .|         ....++..........|+|.+++.+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCc
Confidence            466789999999999999999987555568999982  11   11         22346666667778999999999999


Q ss_pred             CEEEEEEEE
Q psy16852         74 IGVYTCKAT   82 (579)
Q Consensus        74 ~G~Y~C~~~   82 (579)
                      +|.|.|.+.
T Consensus        83 sA~YyCa~~   91 (107)
T d1tjgl1          83 FATYYCQQL   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CceEEEEEC
Confidence            999999754

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=5.3e-10  Score=81.02  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=57.0

Q ss_pred             ceeeeCCCCEEEEEEEEe-eC-CCeeEEEECCEEecC----------CCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852         15 PVVSHQEQPALFTCKVEG-HP-LPTMTWQKDGTELHA----------TEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~-~~-~~~v~W~~~g~~~~~----------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      .+....|++|+|.|.... .. ...|.|++++..+..          ..+.   ....+.+|+|.+++.+|+|.|+|.+.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~---~~~~ngSL~I~nl~~~DsG~Y~c~v~   80 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAF---EILANGDLKIKNLTRDDSGTYNVTVY   80 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTE---EECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeE---EECCCccEEEeCCCHHHCEEEEEEEE
Confidence            467789999999996422 22 237999999877631          1111   12234679999999999999999999


Q ss_pred             cCCeee--EEEEEEEEE
Q psy16852         83 NIGGVA--TCSANLIVL   97 (579)
Q Consensus        83 ~~~g~~--~~~~~~~v~   97 (579)
                      +..|..  ...+.|.|+
T Consensus        81 ~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          81 STNGTRILNKALDLRIL   97 (98)
T ss_dssp             ETTCCEEEEEEEEEEEE
T ss_pred             eCCCCEEEEEEEEEEEE
Confidence            988876  445566664

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.89  E-value=5.9e-09  Score=76.32  Aligned_cols=75  Identities=17%  Similarity=0.332  Sum_probs=56.6

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE---Ee---------cCCCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT---EL---------HATEHYLITTVESVSTLEIINPTKEDI   74 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~---~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~   74 (579)
                      +...|..+.+.+|++|+|.|.........+.||+.  |.   .+         .....+.....+....|+|.+++.+|+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            55678999999999999999987555557999982  11   11         123345555666678999999999999


Q ss_pred             EEEEEEEEc
Q psy16852         75 GVYTCKATN   83 (579)
Q Consensus        75 G~Y~C~~~~   83 (579)
                      |.|.|.+..
T Consensus        84 a~YyCA~~~   92 (108)
T d1jhll_          84 AMYICQQHN   92 (108)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEeeCC
Confidence            999997654

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=5e-10  Score=82.54  Aligned_cols=85  Identities=19%  Similarity=0.139  Sum_probs=55.8

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEec-----------------CCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELH-----------------ATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~-----------------~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      .++-+..+.+|++|+|.|.........+.|+|......                 ....-+.... .+.+|+|.+++.+|
T Consensus         4 i~~~P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~-~ngSL~I~~v~~~D   82 (107)
T d1l6za1           4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-SNGSLLFQMITMKD   82 (107)
T ss_dssp             EEEESSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC-TTSCEEECSCCGGG
T ss_pred             EEEcCCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc-ccccEEEcCCCchh
Confidence            34445567899999999975433455899999543210                 0001122222 34689999999999


Q ss_pred             CEEEEEEEEcCCe-eeEEEEEEEE
Q psy16852         74 IGVYTCKATNIGG-VATCSANLIV   96 (579)
Q Consensus        74 ~G~Y~C~~~~~~g-~~~~~~~~~v   96 (579)
                      +|.|+|++.+..+ ....++.|.|
T Consensus        83 ~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          83 MGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             CEEEEEEEEETTEEECCCCEEECC
T ss_pred             CEEEEEEEEECCCCEEEEEEEEEE
Confidence            9999999987764 3444555554

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.87  E-value=5.1e-09  Score=76.83  Aligned_cols=76  Identities=17%  Similarity=0.325  Sum_probs=58.3

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE---Ee---------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT---EL---------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~---~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      +++..|..+.+.+|++|+|+|.........+.|||.  +.   .+         ....++..........|+|.+++.+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D   82 (107)
T d1d5il1           3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcC
Confidence            355678899999999999999986555557899982  11   11         12346777777778999999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|....
T Consensus        83 sa~YyCa~~~   92 (107)
T d1d5il1          83 MGIYYCLQYD   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEeeecc
Confidence            9999997643

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=5.3e-09  Score=76.75  Aligned_cols=72  Identities=17%  Similarity=0.296  Sum_probs=55.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--C---EEe---------cCCCCEEEEEeCCEEEEEEcCCCCCCCEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--G---TEL---------HATEHYLITTVESVSTLEIINPTKEDIGV   76 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g---~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   76 (579)
                      .+|+.+.+.+|++|+|+|...+.....+.|||.  |   +.+         ....++..........|.|.+++.+|+|.
T Consensus         5 tQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1lk3l1           5 TQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAI   84 (106)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCC
Confidence            345689999999999999997655557999982  1   111         12356777777778999999999999999


Q ss_pred             EEEEEE
Q psy16852         77 YTCKAT   82 (579)
Q Consensus        77 Y~C~~~   82 (579)
                      |.|.+.
T Consensus        85 YyCa~~   90 (106)
T d1lk3l1          85 YFCQQS   90 (106)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            999754

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.86  E-value=4.4e-09  Score=77.11  Aligned_cols=75  Identities=19%  Similarity=0.290  Sum_probs=57.9

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e---------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L---------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      +++..|..+.+.+|++|+|.|.........+.|||.  |..   +         ....++..........|+|.+++.+|
T Consensus         3 ~ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1mexl1           3 VMTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSED   82 (107)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheec
Confidence            456778889999999999999986554457999982  111   1         12356666666778999999999999


Q ss_pred             CEEEEEEEE
Q psy16852         74 IGVYTCKAT   82 (579)
Q Consensus        74 ~G~Y~C~~~   82 (579)
                      +|.|.|.+.
T Consensus        83 sA~YyCa~~   91 (107)
T d1mexl1          83 LAEYFCQQY   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             ceeEEEeEC
Confidence            999999864

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.86  E-value=5.7e-09  Score=76.71  Aligned_cols=76  Identities=16%  Similarity=0.305  Sum_probs=58.6

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE---Ee---------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT---EL---------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~---~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      .++..|..+.+.+|++|+|.|.........+.|||.  |.   .+         ....++..........|.|.+++.+|
T Consensus         3 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (109)
T d1mqkl_           3 ELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPED   82 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccC
Confidence            355679999999999999999986554557999982  21   11         12346666667778999999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|.+..
T Consensus        83 Sa~YyCA~~~   92 (109)
T d1mqkl_          83 FGSYYCQHHY   92 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CeeEEEeeeC
Confidence            9999998753

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=1.5e-08  Score=75.47  Aligned_cols=76  Identities=16%  Similarity=0.315  Sum_probs=56.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee-CCCeeEEEEC--CE-E------------ecCCCCEEEEEeC--CEEEEEEcCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKD--GT-E------------LHATEHYLITTVE--SVSTLEIINPT   70 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~--g~-~------------~~~~~~~~~~~~~--~~~~L~i~~~~   70 (579)
                      ++..|..+.+.+|++|+|.|.+.+. ....+.|||.  |. +            .....++......  ....|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            5678999999999999999998543 3346899982  21 1            1233456655543  35789999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy16852         71 KEDIGVYTCKATNI   84 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~   84 (579)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999988654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.85  E-value=6.1e-09  Score=76.93  Aligned_cols=76  Identities=16%  Similarity=0.303  Sum_probs=58.5

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--C---EEe---------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--G---TEL---------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g---~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      +++..|..+.+.+|++++|+|...+.....+.||+.  |   +.+         ....++.....+....|+|.+++.+|
T Consensus         5 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~D   84 (109)
T d1bwwa_           5 QMTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPED   84 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCc
Confidence            355678899999999999999987655557899982  1   111         22356776777778899999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|.+..
T Consensus        85 sa~YyCA~~~   94 (109)
T d1bwwa_          85 IATYYCQQYQ   94 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEeecC
Confidence            9999998653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.85  E-value=8.4e-09  Score=75.30  Aligned_cols=72  Identities=24%  Similarity=0.307  Sum_probs=54.8

Q ss_pred             cCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE------------ecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE------------LHATEHYLITTVESVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~------------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   78 (579)
                      |..+.+.+|++|+|.|.........+.|||.  |..            -....++..........|.|.+++.+|+|.|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   84 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY   84 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence            5589999999999999876544457999982  111            11234566677777899999999999999999


Q ss_pred             EEEEcC
Q psy16852         79 CKATNI   84 (579)
Q Consensus        79 C~~~~~   84 (579)
                      |.+...
T Consensus        85 CA~~~~   90 (103)
T d8faba1          85 CQAWDN   90 (103)
T ss_dssp             EEEEET
T ss_pred             eeecCC
Confidence            987543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=5e-09  Score=79.17  Aligned_cols=78  Identities=17%  Similarity=0.278  Sum_probs=58.1

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEE------e----------------cCCCCEEEE-EeCC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTE------L----------------HATEHYLIT-TVES   60 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~------~----------------~~~~~~~~~-~~~~   60 (579)
                      +|.+...|+.+.+.+|++++|+|.+.+.....+.|||  .|..      +                ....++... ..+.
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            5788889999999999999999999776666899998  1211      1                001233332 2234


Q ss_pred             EEEEEEcCCCCCCCEEEEEEEEc
Q psy16852         61 VSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus        61 ~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      ..+|+|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            57899999999999999998753

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.6e-09  Score=81.33  Aligned_cols=88  Identities=22%  Similarity=0.374  Sum_probs=61.0

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCC----CeeEEEECCEE----------------ec---C--CCCEEEEEe---CCE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPL----PTMTWQKDGTE----------------LH---A--TEHYLITTV---ESV   61 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~g~~----------------~~---~--~~~~~~~~~---~~~   61 (579)
                      +.+...+.+.+|++++|+|.+...+.    ..+.|++.+..                ..   .  ..+..+...   .+.
T Consensus         8 t~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   87 (124)
T d1eaja_           8 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGD   87 (124)
T ss_dssp             SSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTB
T ss_pred             EccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCE
Confidence            33345588999999999999875433    25899872110                10   0  112222111   234


Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEE
Q psy16852         62 STLEIINPTKEDIGVYTCKATNIGGVATCSANLIVL   97 (579)
Q Consensus        62 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~v~   97 (579)
                      .+|+|.+++.+|+|.|+|.+.+..+.....+.|+|+
T Consensus        88 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          88 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            689999999999999999999988888888888775

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.84  E-value=8.1e-09  Score=75.49  Aligned_cols=73  Identities=15%  Similarity=0.252  Sum_probs=55.3

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E---Ee---------cCCCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T---EL---------HATEHYLITTVESVSTLEIINPTKEDI   74 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~---~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~   74 (579)
                      ++..|..+.+.+|++|+|.|.... ....+.||+..  .   .+         ....++.....+....|.|.+++.+|+
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            556799999999999999998743 33468999821  1   01         123456666667788999999999999


Q ss_pred             EEEEEEEE
Q psy16852         75 GVYTCKAT   82 (579)
Q Consensus        75 G~Y~C~~~   82 (579)
                      |.|.|...
T Consensus        82 a~YyCa~~   89 (104)
T d1yqvl1          82 ATYYCQQW   89 (104)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEec
Confidence            99999764

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.84  E-value=4.2e-09  Score=78.62  Aligned_cols=77  Identities=14%  Similarity=0.267  Sum_probs=55.9

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEE---e---------cCCCCEEEEEe--CCEEEEEEcCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTE---L---------HATEHYLITTV--ESVSTLEIINPTKE   72 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~---~---------~~~~~~~~~~~--~~~~~L~i~~~~~~   72 (579)
                      +...|..+.+.+|+.|+|+|...+.....+.|||  .|..   +         ....++.....  .....|+|.+++.+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            5667999999999999999998665545799998  2211   1         11223333333  34679999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy16852         73 DIGVYTCKATNIG   85 (579)
Q Consensus        73 d~G~Y~C~~~~~~   85 (579)
                      |+|.|.|.+....
T Consensus        83 Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          83 DSATYLCAVRPTS   95 (113)
T ss_dssp             GCEEEEEEEEESS
T ss_pred             CCcEEeEeEecCC
Confidence            9999999987543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6e-09  Score=78.60  Aligned_cols=88  Identities=19%  Similarity=0.236  Sum_probs=60.0

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC---CCeeEEEECCEE-----e---------cCCCCEEEEEe--CCEEEEEEcCCCC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP---LPTMTWQKDGTE-----L---------HATEHYLITTV--ESVSTLEIINPTK   71 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~---~~~v~W~~~g~~-----~---------~~~~~~~~~~~--~~~~~L~i~~~~~   71 (579)
                      ..|+.+.+.+|++|+|.|......   ...+.|||....     +         ....+..+...  ....+|+|.+++.
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            468899999999999999874321   235789983311     1         11233433333  3468999999999


Q ss_pred             CCCEEEEEEEEcCCeeeEEEEEEEEEe
Q psy16852         72 EDIGVYTCKATNIGGVATCSANLIVLE   98 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~g~~~~~~~~~v~~   98 (579)
                      +|+|.|.|.+..........+.|+|.+
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            999999999865443445567777765

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.82  E-value=1.6e-08  Score=74.63  Aligned_cols=76  Identities=18%  Similarity=0.321  Sum_probs=56.7

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEee-C---CCeeEEEEC--CEE----e--------cCCCCEEEEEeCCEEEEEEcCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGH-P---LPTMTWQKD--GTE----L--------HATEHYLITTVESVSTLEIINP   69 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~-~---~~~v~W~~~--g~~----~--------~~~~~~~~~~~~~~~~L~i~~~   69 (579)
                      +++..|..+.+.+|++|+|+|.++.. .   ...+.|||.  |..    +        ....++.....+....|+|.++
T Consensus         3 ~ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~   82 (111)
T d2gsia1           3 VLTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPV   82 (111)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccc
Confidence            35677999999999999999987532 1   224899982  211    1        1235677777777899999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy16852         70 TKEDIGVYTCKATN   83 (579)
Q Consensus        70 ~~~d~G~Y~C~~~~   83 (579)
                      +.+|+|.|.|.+..
T Consensus        83 ~~~DsA~YyCa~~~   96 (111)
T d2gsia1          83 EEEDAATYYCSHIR   96 (111)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             cccCCceEEEEECC
Confidence            99999999997653

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.82  E-value=2.5e-09  Score=78.53  Aligned_cols=75  Identities=13%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE------------ecCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE------------LHATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~------------~~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      +++..|..+.+.+|++|+|+|.........+.|||.  |..            .....++..........|.|.+++.+|
T Consensus         3 ~ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   82 (107)
T d3cx5k1           3 ELTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPED   82 (107)
T ss_dssp             CEEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCC
T ss_pred             CEECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecC
Confidence            356779999999999999999986555557999982  211            112234555556677899999999999


Q ss_pred             CEEEEEEEE
Q psy16852         74 IGVYTCKAT   82 (579)
Q Consensus        74 ~G~Y~C~~~   82 (579)
                      +|.|.|.+.
T Consensus        83 sa~YyCa~~   91 (107)
T d3cx5k1          83 IATYFCQHH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CCcEEeeeC
Confidence            999999764

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.82  E-value=1.2e-08  Score=75.31  Aligned_cols=72  Identities=17%  Similarity=0.264  Sum_probs=54.3

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECC--E---Ee---------cCCCCEEEEEeCCEEEEEEcCCCCCCCE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDG--T---EL---------HATEHYLITTVESVSTLEIINPTKEDIG   75 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g--~---~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~G   75 (579)
                      +|+.+.+.+|++|+|.|.+.+..  ...+.|||..  .   .+         ....++..........|.|.+++.+|+|
T Consensus         6 Q~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA   85 (114)
T d2rhea_           6 QPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEA   85 (114)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCc
Confidence            34579999999999999986543  3469999832  1   11         1234666666677899999999999999


Q ss_pred             EEEEEEEc
Q psy16852         76 VYTCKATN   83 (579)
Q Consensus        76 ~Y~C~~~~   83 (579)
                      .|.|.+..
T Consensus        86 ~YyCA~~~   93 (114)
T d2rhea_          86 DYYCAAWN   93 (114)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeecC
Confidence            99998764

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=2.2e-09  Score=77.66  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=56.4

Q ss_pred             eeeecCCCeEEEEEEE-ee-CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVT-GR-PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~-g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      +....|++++|.|... .. +...|.|++++..+.....       .....                  ....+..+.  
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~-------~~~~~------------------~~~~~~~~~--   57 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKR-------KMKPF------------------LKSGAFEIL--   57 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEET-------TSCCE------------------ESSTTEEEC--
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEcc-------CCccc------------------cCCCeEEEC--
Confidence            4567899999999632 22 2247999998876532110       00000                  001111122  


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeE--EEEEEEEEe
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSV--TCTATLSLL  533 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~  533 (579)
                       ..+.|+|.+++.+|+|.|+|.+.|..|..  ..++.|.|+
T Consensus        58 -~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          58 -ANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             -TTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             -CCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence             22349999999999999999999999976  456666653

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=1.7e-08  Score=73.98  Aligned_cols=77  Identities=14%  Similarity=0.254  Sum_probs=56.8

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCC---CeeEEEE---CCEE--e---------cCCCCEEEEEeCCEEEEEEcCC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPL---PTMTWQK---DGTE--L---------HATEHYLITTVESVSTLEIINP   69 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~---~~v~W~~---~g~~--~---------~~~~~~~~~~~~~~~~L~i~~~   69 (579)
                      +.++. |+.+.+.+|++++|.|..++...   -.+.|||   +..+  +         ....++..........|.|.++
T Consensus         2 ~~~tQ-~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~   80 (110)
T d1oaql_           2 AVVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGA   80 (110)
T ss_dssp             CCEEE-CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESC
T ss_pred             CCEee-CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCC
Confidence            34444 55789999999999999864332   2389998   2211  1         1235777777788899999999


Q ss_pred             CCCCCEEEEEEEEcC
Q psy16852         70 TKEDIGVYTCKATNI   84 (579)
Q Consensus        70 ~~~d~G~Y~C~~~~~   84 (579)
                      +.+|+|.|.|.+...
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          81 QTEDEAIYFCALWYS   95 (110)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             CccccEeEEEEcccC
Confidence            999999999987643

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=5.8e-09  Score=77.82  Aligned_cols=75  Identities=17%  Similarity=0.257  Sum_probs=56.9

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--C---EEe---------cCCCCEEEEEeCCEEEEEEcCCCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--G---TEL---------HATEHYLITTVESVSTLEIINPTKEDI   74 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g---~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~   74 (579)
                      ++..|..+.+.+|++++|+|...+.....+.|||.  +   ..+         ....++..........|.|.+++.+|+
T Consensus         4 ltQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (119)
T d1f3rb2           4 LTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV   83 (119)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCC
Confidence            55678899999999999999876544457999982  1   111         123456666666778999999999999


Q ss_pred             EEEEEEEEc
Q psy16852         75 GVYTCKATN   83 (579)
Q Consensus        75 G~Y~C~~~~   83 (579)
                      |.|.|.+..
T Consensus        84 avYyCa~~~   92 (119)
T d1f3rb2          84 ATYFCYQYN   92 (119)
T ss_dssp             SEEEEEEES
T ss_pred             eEEEeeccC
Confidence            999998754

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.3e-09  Score=77.27  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=58.7

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC-CCeeEEEEC----CEE----e------------cCCCCEEEEEeCCEEEEEE
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP-LPTMTWQKD----GTE----L------------HATEHYLITTVESVSTLEI   66 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~-~~~v~W~~~----g~~----~------------~~~~~~~~~~~~~~~~L~i   66 (579)
                      ++...|.+..+.+|++|+|.|.+.... ...+.|||.    +..    +            ....++..........|+|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            467889999999999999999986543 346899982    110    0            1124566666777889999


Q ss_pred             cCCCCCCCEEEEEEEEcC
Q psy16852         67 INPTKEDIGVYTCKATNI   84 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~~~   84 (579)
                      .+++.+|+|.|.|.+...
T Consensus        82 ~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          82 SDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCGGGCEEEEEEEEET
T ss_pred             ccCCCCCCEEEeEeEcCC
Confidence            999999999999998643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.79  E-value=1.4e-08  Score=75.41  Aligned_cols=74  Identities=18%  Similarity=0.337  Sum_probs=55.5

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee---CC---CeeEEEEC--CEE------------ecCCCCEEEEEeCCEEEEEEcC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH---PL---PTMTWQKD--GTE------------LHATEHYLITTVESVSTLEIIN   68 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~---~~---~~v~W~~~--g~~------------~~~~~~~~~~~~~~~~~L~i~~   68 (579)
                      +...|..+.+.+|++|+|.|.+.+.   ..   ..+.|||.  |..            .....++.....+....|.|.+
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~   83 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS   83 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence            5567999999999999999987532   11   24999982  211            1223456666677788999999


Q ss_pred             CCCCCCEEEEEEEE
Q psy16852         69 PTKEDIGVYTCKAT   82 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~   82 (579)
                      ++.+|+|.|.|.+.
T Consensus        84 l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          84 VQAEDLAVYYCKQS   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCCCeEEEeccc
Confidence            99999999999764

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.6e-09  Score=74.70  Aligned_cols=79  Identities=10%  Similarity=0.034  Sum_probs=57.3

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      -+|.|...|..+ |..|++|+|.|... .....+.|+|+|......... .........|.|.+++.+|+|.|+|...+.
T Consensus         3 PKPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1           3 PKPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeeCCCc-ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEc-cCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            468898988776 78999999999874 334589999998754311100 000123468999999999999999998765


Q ss_pred             Ce
Q psy16852         85 GG   86 (579)
Q Consensus        85 ~g   86 (579)
                      ..
T Consensus        80 ~~   81 (95)
T d1olla1          80 EL   81 (95)
T ss_dssp             TE
T ss_pred             CC
Confidence            44

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.78  E-value=1.4e-08  Score=74.37  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=55.6

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e---------cCCCCEEEEEeCCEEEEEEcCCCCCCCEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L---------HATEHYLITTVESVSTLEIINPTKEDIGV   76 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   76 (579)
                      .+|..+.+.+|++|+|+|.........+.|||.  |..   +         ....++..........|.|.+++.+|+|.
T Consensus         5 tQp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav   84 (109)
T d1w72l1           5 TQPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEAD   84 (109)
T ss_dssp             BCCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEE
Confidence            345679999999999999875444447999982  211   1         12345666677778999999999999999


Q ss_pred             EEEEEEcC
Q psy16852         77 YTCKATNI   84 (579)
Q Consensus        77 Y~C~~~~~   84 (579)
                      |.|.+...
T Consensus        85 YyCA~~~~   92 (109)
T d1w72l1          85 YYCQVWDS   92 (109)
T ss_dssp             EEEEEEET
T ss_pred             EEEEecCC
Confidence            99987643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.78  E-value=2.2e-08  Score=73.79  Aligned_cols=77  Identities=19%  Similarity=0.317  Sum_probs=57.9

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEee--CCCeeEEEE------CCEEecCCCCEEEEEeC--CEEEEEEcCCCCCCCEEE
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGH--PLPTMTWQK------DGTELHATEHYLITTVE--SVSTLEIINPTKEDIGVY   77 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~------~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y   77 (579)
                      ++.+.|..+.+.+|+.++|.|...+.  ....+.|||      ....+....++......  ....|+|.+++.+|+|.|
T Consensus         1 rV~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   80 (112)
T d1sq2n_           1 RVDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTY   80 (112)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEE
Confidence            35677999999999999999998543  345799998      22334445556555443  367899999999999999


Q ss_pred             EEEEEcC
Q psy16852         78 TCKATNI   84 (579)
Q Consensus        78 ~C~~~~~   84 (579)
                      .|.+...
T Consensus        81 yCA~~~~   87 (112)
T d1sq2n_          81 RCGLGVA   87 (112)
T ss_dssp             EEEECBT
T ss_pred             eEEEecC
Confidence            9987543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.78  E-value=1.8e-08  Score=74.29  Aligned_cols=75  Identities=21%  Similarity=0.334  Sum_probs=55.7

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEEC--CEE------------ecCCCCEEEEEeCCEEEEEEcC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKD--GTE------------LHATEHYLITTVESVSTLEIIN   68 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~--g~~------------~~~~~~~~~~~~~~~~~L~i~~   68 (579)
                      +++..|..+.+.+|++|+|.|...+..     ...+.||+.  |..            -....++.....+....|.|.+
T Consensus         3 ~lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~   82 (112)
T d1ncwl1           3 VMTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISR   82 (112)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             cEeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECc
Confidence            355679999999999999999975422     235899982  111            1123566666677788999999


Q ss_pred             CCCCCCEEEEEEEE
Q psy16852         69 PTKEDIGVYTCKAT   82 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~   82 (579)
                      ++.+|+|.|.|...
T Consensus        83 ~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          83 VEAEDLGVYYCWQG   96 (112)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCcCEeEEEEcC
Confidence            99999999999653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.77  E-value=2.4e-08  Score=74.05  Aligned_cols=75  Identities=16%  Similarity=0.322  Sum_probs=55.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e---------cCCCCEEEEEe--CCEEEEEEcCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L---------HATEHYLITTV--ESVSTLEIINPTKE   72 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~---------~~~~~~~~~~~--~~~~~L~i~~~~~~   72 (579)
                      +...|..+.+.+|++++|.|.........+.||+.  |+.   +         ....++.....  .....|.|.+++.+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            45678889999999999999986655557899982  211   1         11234444333  34789999999999


Q ss_pred             CCEEEEEEEEc
Q psy16852         73 DIGVYTCKATN   83 (579)
Q Consensus        73 d~G~Y~C~~~~   83 (579)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (111)
T d1bd2d1          83 DSAVYFCAAME   93 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             ccEEEEeeccC
Confidence            99999998764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.77  E-value=6.3e-09  Score=77.89  Aligned_cols=89  Identities=18%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCE---Eec------------CCCCEEEEEeCCEEEEEEcCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGT---ELH------------ATEHYLITTVESVSTLEIINPTK   71 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~---~~~------------~~~~~~~~~~~~~~~L~i~~~~~   71 (579)
                      ++.+|..+.+.+|++|+|.|.........+.|||  .|.   .+.            ...............|+|.+++.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            4566778999999999999998765566789998  221   110            00111111122356899999999


Q ss_pred             CCCEEEEEEEEcCCeeeE--EEEEEEEE
Q psy16852         72 EDIGVYTCKATNIGGVAT--CSANLIVL   97 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~g~~~--~~~~~~v~   97 (579)
                      +|+|.|.|.+........  .-..|+|+
T Consensus        83 ~Dsg~YyCa~~~~~~~~~FG~GT~L~V~  110 (115)
T d1i9ea_          83 SDSAVYFCAVSGFASALTFGSGTKVIVL  110 (115)
T ss_dssp             GGCEEEEEEEEETTEEEEECCCEEEEEE
T ss_pred             cccceecccccCCCCCCEECCCEEEEEe
Confidence            999999998764332221  12455554

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.76  E-value=1.1e-08  Score=75.39  Aligned_cols=74  Identities=18%  Similarity=0.293  Sum_probs=56.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee-CCCeeEEEEC--CE---Ee---------cCCCCEEEEEeCCEEEEEEcCCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKD--GT---EL---------HATEHYLITTVESVSTLEIINPTKED   73 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~--g~---~~---------~~~~~~~~~~~~~~~~L~i~~~~~~d   73 (579)
                      ++..|..+.+.+|++++|.|..... ....+.|||.  |.   .+         ....++..........|+|.+++.+|
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED   83 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence            4567899999999999999987543 2336899982  21   11         12346666666778899999999999


Q ss_pred             CEEEEEEEE
Q psy16852         74 IGVYTCKAT   82 (579)
Q Consensus        74 ~G~Y~C~~~   82 (579)
                      +|.|.|.+.
T Consensus        84 sa~YyCa~~   92 (108)
T d2fx7l1          84 FAVYYCQQY   92 (108)
T ss_dssp             CSEEEEEEC
T ss_pred             cEEEeeecC
Confidence            999999864

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.76  E-value=3.6e-08  Score=73.13  Aligned_cols=76  Identities=18%  Similarity=0.341  Sum_probs=56.9

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CE----EecCCCCEEEEEeC--CEEEEEEcCCCCCCCEEE
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GT----ELHATEHYLITTVE--SVSTLEIINPTKEDIGVY   77 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~----~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y   77 (579)
                      .+.+.|..+.+.+|++|+|+|.+.+..  ...+.|||.  |.    .+....++......  ....|+|.+++.+|+|.|
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   81 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY   81 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceE
Confidence            356779999999999999999997543  346999972  22    23344555555443  357899999999999999


Q ss_pred             EEEEEc
Q psy16852         78 TCKATN   83 (579)
Q Consensus        78 ~C~~~~   83 (579)
                      .|.+..
T Consensus        82 yCa~~~   87 (113)
T d1vesa_          82 KCQAFY   87 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            999853

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.7e-09  Score=76.14  Aligned_cols=81  Identities=12%  Similarity=-0.014  Sum_probs=56.9

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEE-EEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYL-ITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      +-+|.|...|..+ |..|++|+|.|.+. .+...+.|+|+|.......... .........+.|.+++.+|+|.|+|...
T Consensus         5 lpkPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~   82 (99)
T d1ucta1           5 FPMPFISAKSSPV-IPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   82 (99)
T ss_dssp             SCCCCEEESSCSE-EETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEecCCCc-eeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEE
Confidence            4568888888765 88999999999874 3455899999875322111111 1122234679999999999999999988


Q ss_pred             cCCe
Q psy16852         83 NIGG   86 (579)
Q Consensus        83 ~~~g   86 (579)
                      +...
T Consensus        83 ~~~~   86 (99)
T d1ucta1          83 IGHY   86 (99)
T ss_dssp             ETTT
T ss_pred             CCCc
Confidence            7654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.74  E-value=1.7e-08  Score=74.71  Aligned_cols=76  Identities=16%  Similarity=0.223  Sum_probs=56.2

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CE---E---------ecCCCCEEEEEeCCEEEEEEcCCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GT---E---------LHATEHYLITTVESVSTLEIINPTK   71 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~---~---------~~~~~~~~~~~~~~~~~L~i~~~~~   71 (579)
                      +++. |..+.+.+|++++|.|...+..  ...+.||+.  +.   .         -....++.....+....|.|.+++.
T Consensus         3 vltQ-p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~   81 (111)
T d1rzfl1           3 ILTQ-PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQT   81 (111)
T ss_dssp             SBBC-CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceee-CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeecc
Confidence            4444 5589999999999999986433  235999982  11   1         1123566666777789999999999


Q ss_pred             CCCEEEEEEEEcC
Q psy16852         72 EDIGVYTCKATNI   84 (579)
Q Consensus        72 ~d~G~Y~C~~~~~   84 (579)
                      +|+|.|.|.+...
T Consensus        82 ~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          82 GDEADYYCGTWDS   94 (111)
T ss_dssp             GGCSEEEEEEEET
T ss_pred             ccCcceEEeecCC
Confidence            9999999987643

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.74  E-value=5.6e-09  Score=78.07  Aligned_cols=76  Identities=18%  Similarity=0.352  Sum_probs=55.7

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--E---Ee---------cCCCCEEEEEe--CCEEEEEEcCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--T---EL---------HATEHYLITTV--ESVSTLEIINPTKE   72 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~---~~---------~~~~~~~~~~~--~~~~~L~i~~~~~~   72 (579)
                      +.+.|..+.+.+|++|+|.|.........+.|||..  .   .+         ....++.....  ....+|+|.+++.+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            556799999999999999999876566689999822  1   11         11123333222  34688999999999


Q ss_pred             CCEEEEEEEEcC
Q psy16852         73 DIGVYTCKATNI   84 (579)
Q Consensus        73 d~G~Y~C~~~~~   84 (579)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          83 DSASYICVVSDR   94 (114)
T ss_dssp             GCSEEEEEEECS
T ss_pred             hCcccceeeecC
Confidence            999999998754

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.72  E-value=1.2e-08  Score=75.49  Aligned_cols=73  Identities=18%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             ccCceeeeCCCCEEEEEEEEee-CCCeeEEEEC--CEE---e---------cCCCCEEEEEeCCEEEEEEcCCCCCCCEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKD--GTE---L---------HATEHYLITTVESVSTLEIINPTKEDIGV   76 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~--g~~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   76 (579)
                      +|+++.+.+|++|+|.|..... ....+.|||.  |..   +         ....++..........|.|.+++.+|+|.
T Consensus         4 QP~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   83 (110)
T d2esvd1           4 QPPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAV   83 (110)
T ss_dssp             CCSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEE
T ss_pred             cCCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceE
Confidence            3668999999999999987543 2346899982  211   1         11122222223457889999999999999


Q ss_pred             EEEEEEcC
Q psy16852         77 YTCKATNI   84 (579)
Q Consensus        77 Y~C~~~~~   84 (579)
                      |.|.+...
T Consensus        84 YyCa~~~~   91 (110)
T d2esvd1          84 YYCIVVRS   91 (110)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEeCC
Confidence            99988643

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.72  E-value=2.2e-08  Score=74.03  Aligned_cols=74  Identities=18%  Similarity=0.291  Sum_probs=55.1

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEEC--CEE------------ecCCCCEEEEEeCCEEEEEEcC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKD--GTE------------LHATEHYLITTVESVSTLEIIN   68 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~--g~~------------~~~~~~~~~~~~~~~~~L~i~~   68 (579)
                      +++..|..+.+.+|++|+|.|...+..     ...+.||+.  |..            -....++..........|.|.+
T Consensus         3 vlTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~   82 (112)
T d1mjul1           3 VMTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISR   82 (112)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESS
T ss_pred             ceEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECC
Confidence            355678899999999999999986531     236899982  111            1123456666667788999999


Q ss_pred             CCCCCCEEEEEEE
Q psy16852         69 PTKEDIGVYTCKA   81 (579)
Q Consensus        69 ~~~~d~G~Y~C~~   81 (579)
                      ++.+|+|.|.|..
T Consensus        83 ~~~~DsAvYyCa~   95 (112)
T d1mjul1          83 VEAEDVGVYYCLQ   95 (112)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccccCCceEEEEe
Confidence            9999999999954

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.72  E-value=3.5e-08  Score=73.20  Aligned_cols=76  Identities=14%  Similarity=0.240  Sum_probs=56.7

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC---CCeeEEEEC--CEE------------ecCCCCEEEEEeCCEEEEEEcCCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP---LPTMTWQKD--GTE------------LHATEHYLITTVESVSTLEIINPT   70 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~---~~~v~W~~~--g~~------------~~~~~~~~~~~~~~~~~L~i~~~~   70 (579)
                      .++. |..+.+.+|++|+|.|...+..   ...+.|||.  |..            .....++..........|.|.+++
T Consensus         3 ~ltQ-P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~   81 (112)
T d1lgva1           3 ALTQ-PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQ   81 (112)
T ss_dssp             CBBC-CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCC
T ss_pred             CccC-CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCc
Confidence            3555 7789999999999999986532   235899982  111            122345666667778999999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy16852         71 KEDIGVYTCKATNI   84 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~   84 (579)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (112)
T d1lgva1          82 AEDEADYYCSSYDG   95 (112)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccCEEEEEeeecC
Confidence            99999999987654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.71  E-value=9.8e-09  Score=76.70  Aligned_cols=76  Identities=16%  Similarity=0.220  Sum_probs=54.3

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE---Ee---------cCCCCEEEEEe--CCEEEEEEcCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT---EL---------HATEHYLITTV--ESVSTLEIINPTKE   72 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~---~~---------~~~~~~~~~~~--~~~~~L~i~~~~~~   72 (579)
                      ++..|..+.+.+|++|+|.|.........+.|||.  |.   .+         ....++.....  .....|.|.+++.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            45668889999999999999987666668999982  21   11         11123333222  23567999999999


Q ss_pred             CCEEEEEEEEcC
Q psy16852         73 DIGVYTCKATNI   84 (579)
Q Consensus        73 d~G~Y~C~~~~~   84 (579)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1lp9e1          84 DSALYYCALFLA   95 (115)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             cCccceEEEEcC
Confidence            999999987653

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.71  E-value=1.1e-08  Score=76.16  Aligned_cols=75  Identities=20%  Similarity=0.384  Sum_probs=53.0

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e---------cCCCCEEEEEe--CCEEEEEEcCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L---------HATEHYLITTV--ESVSTLEIINPTKE   72 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~---------~~~~~~~~~~~--~~~~~L~i~~~~~~   72 (579)
                      +...|..+.+.+|++++|+|.........+.||+.  |..   +         ....+......  .....|.|.+++.+
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence            45668899999999999999986544446999982  211   0         11123333322  34678999999999


Q ss_pred             CCEEEEEEEEc
Q psy16852         73 DIGVYTCKATN   83 (579)
Q Consensus        73 d~G~Y~C~~~~   83 (579)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (110)
T d1u3ha1          82 DSATYFCAASA   92 (110)
T ss_dssp             SCSEEEECCEE
T ss_pred             CceeEeeeecC
Confidence            99999998763

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.70  E-value=2.3e-08  Score=73.23  Aligned_cols=72  Identities=19%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEE---e---------cCCCCEEEEEeCCEEEEEEcCCCCCCCEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTE---L---------HATEHYLITTVESVSTLEIINPTKEDIGVY   77 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   77 (579)
                      +|..+.+.+|++|+|.|.........+.|||  .|+.   +         ....++..........|.|.+++.+|+|.|
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Y   84 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceE
Confidence            4778999999999999987543444699998  1211   1         122466777777788999999999999999


Q ss_pred             EEEEEc
Q psy16852         78 TCKATN   83 (579)
Q Consensus        78 ~C~~~~   83 (579)
                      .|.+..
T Consensus        85 yCA~~~   90 (108)
T d1nfde1          85 YCLSSY   90 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEeec
Confidence            998764

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.70  E-value=2.1e-08  Score=74.10  Aligned_cols=75  Identities=20%  Similarity=0.313  Sum_probs=54.9

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee----CCCeeEEEEC--CEE---e---------cCCCCEEEEEeCCEEEEEEcCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH----PLPTMTWQKD--GTE---L---------HATEHYLITTVESVSTLEIINPT   70 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~----~~~~v~W~~~--g~~---~---------~~~~~~~~~~~~~~~~L~i~~~~   70 (579)
                      ++..|..+.+.+|++|+|.|.....    ....+.|||.  |+.   +         ....++..........|.|.+++
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   83 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccc
Confidence            4567899999999999999987432    1224999982  221   1         12245555555668899999999


Q ss_pred             CCCCEEEEEEEEc
Q psy16852         71 KEDIGVYTCKATN   83 (579)
Q Consensus        71 ~~d~G~Y~C~~~~   83 (579)
                      .+|+|.|.|.+.+
T Consensus        84 ~~Dsa~YyCa~~~   96 (111)
T d1j05a_          84 ADDVATYYCQQTN   96 (111)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCccEEEeecC
Confidence            9999999997653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.70  E-value=3.1e-08  Score=73.73  Aligned_cols=88  Identities=16%  Similarity=0.273  Sum_probs=59.5

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE------------ecCCCCEEEEEe--CCEEEEEEcCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE------------LHATEHYLITTV--ESVSTLEIINPTKE   72 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~------------~~~~~~~~~~~~--~~~~~L~i~~~~~~   72 (579)
                      +...|..+.+.+|++|+|.|...+. ...+.|||.  |..            .....++.....  .....|+|.+++.+
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG   81 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence            4566889999999999999997543 347999982  110            111233433333  34789999999999


Q ss_pred             CCEEEEEEEEcCCeeeE--EEEEEEEE
Q psy16852         73 DIGVYTCKATNIGGVAT--CSANLIVL   97 (579)
Q Consensus        73 d~G~Y~C~~~~~~g~~~--~~~~~~v~   97 (579)
                      |+|.|.|.+....+...  .-..|+|.
T Consensus        82 Dsa~YyCa~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          82 DTGLYLCAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             GCEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred             ceeeEcccccCCCCCcEECCCEEEEEe
Confidence            99999998875433221  23556664

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.68  E-value=3.9e-08  Score=72.77  Aligned_cols=75  Identities=16%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC-----CCeeEEEEC--CE------------EecCCCCEEEEEeCCEEEEEEcC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP-----LPTMTWQKD--GT------------ELHATEHYLITTVESVSTLEIIN   68 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~-----~~~v~W~~~--g~------------~~~~~~~~~~~~~~~~~~L~i~~   68 (579)
                      .++..|..+.+.+|++|+|.|...+..     ...+.||+.  |.            .-....++.....+....|+|.+
T Consensus         4 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~   83 (113)
T d1n4xl_           4 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   83 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESS
T ss_pred             eEeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCC
Confidence            356778999999999999999985432     236999982  11            11223566666667788999999


Q ss_pred             CCCCCCEEEEEEEE
Q psy16852         69 PTKEDIGVYTCKAT   82 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~   82 (579)
                      ++.+|+|.|.|...
T Consensus        84 ~~~~DsavYyCa~~   97 (113)
T d1n4xl_          84 VEAEDLGIYYCFQG   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             CCcccCEEEEEEEC
Confidence            99999999999654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.68  E-value=2.5e-08  Score=74.48  Aligned_cols=76  Identities=17%  Similarity=0.262  Sum_probs=53.3

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee-CCCeeEEEEC--CEE---e----------cCCCCEEEEEe--CCEEEEEEcCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKD--GTE---L----------HATEHYLITTV--ESVSTLEIINPT   70 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~--g~~---~----------~~~~~~~~~~~--~~~~~L~i~~~~   70 (579)
                      ++..|..+.+.+|++|+|.|..... ....+.|||.  |..   +          ....+......  .....|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            5667889999999999999987543 3346889982  211   1          01122333332  346789999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy16852         71 KEDIGVYTCKATNI   84 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~   84 (579)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          83 VVDSAVYFCALSGF   96 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccCCCceEeCCCC
Confidence            99999999987654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.9e-08  Score=74.70  Aligned_cols=111  Identities=14%  Similarity=0.223  Sum_probs=64.3

Q ss_pred             eeecCCCceeeecCCCeEEEEEEEeeCCC----eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        409 KFTKPLKPVIAEAQSPATLKATVTGRPTP----SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       409 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~----~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      .++.+...+.+.+|++++|.|.+.+.+..    .+.|++............+..  ..+.   ........-.|+.    
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~R~----   76 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILY--SGDK---IYDDYYPDLKGRV----   76 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEE--ETTE---EECTTSSTTTTTE----
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEE--eCCc---cccccCcccccce----
Confidence            34444455678899999999998754432    589988432111111000100  0000   0000001101111    


Q ss_pred             ecceeeee---eeCCeeEEEEeecccccceeEEEEEEeCCeeEEEEEEEEEe
Q psy16852        485 SSTETKIM---TDGNRSVLLISKITRDQIGDVTCRAENVAGSVTCTATLSLL  533 (579)
Q Consensus       485 ~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  533 (579)
                           .+.   .......|+|.+++.+|+|.|.|.+.+..|.....+.|+|.
T Consensus        77 -----~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          77 -----HFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             -----EECCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -----EEEccCCCCCEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence                 111   11234569999999999999999999999988888888875

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.66  E-value=8.9e-08  Score=70.73  Aligned_cols=75  Identities=13%  Similarity=0.228  Sum_probs=54.9

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e-------------cCCCCEEEEEeCCEEEEEEcCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L-------------HATEHYLITTVESVSTLEIINP   69 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~-------------~~~~~~~~~~~~~~~~L~i~~~   69 (579)
                      .+...|..+.+.+|++++|+|...+ ....+.|||.  |..   +             ................|+|.++
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            4667799999999999999998754 3457999982  211   0             0112233344456789999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy16852         70 TKEDIGVYTCKATN   83 (579)
Q Consensus        70 ~~~d~G~Y~C~~~~   83 (579)
                      +.+|+|.|.|.+..
T Consensus        82 ~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          82 TPSQTSVYFCASGG   95 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHhhCEEEEEeeCC
Confidence            99999999998764

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.66  E-value=2.7e-08  Score=74.37  Aligned_cols=77  Identities=13%  Similarity=0.254  Sum_probs=56.2

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEee-CCCeeEEEE--CCEE---e------------cCCCCEEEEEe--CCEEEEEEc
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQK--DGTE---L------------HATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~--~g~~---~------------~~~~~~~~~~~--~~~~~L~i~   67 (579)
                      +++..|..+.+.+|++|+|.|...+. ....+.|||  .|..   +            ....++.....  .....|+|.
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS   81 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence            35678999999999999999998643 345799998  1211   1            12245555443  345789999


Q ss_pred             CCCCCCCEEEEEEEEcC
Q psy16852         68 NPTKEDIGVYTCKATNI   84 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~   84 (579)
                      +++.+|+|.|.|.+...
T Consensus        82 ~~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          82 PVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             SCCGGGCEEEEEEEECT
T ss_pred             CccccccccceeeEecC
Confidence            99999999999988754

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.1e-08  Score=72.52  Aligned_cols=69  Identities=16%  Similarity=0.229  Sum_probs=47.9

Q ss_pred             ceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEe--cC--------C----CCEEEEE---eCCEEEEEEcCCCCCCCEEE
Q psy16852         15 PVVSHQEQPALFTCKVEGHPLPTMTWQKDGTEL--HA--------T----EHYLITT---VESVSTLEIINPTKEDIGVY   77 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~--~~--------~----~~~~~~~---~~~~~~L~i~~~~~~d~G~Y   77 (579)
                      .+...+|++|+|+|.........+.||+.....  ..        .    .++....   ..++.+|+|.+++.+|+|.|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            367889999999999876666689999854321  00        0    1111110   12346799999999999999


Q ss_pred             EEEEEc
Q psy16852         78 TCKATN   83 (579)
Q Consensus        78 ~C~~~~   83 (579)
                      +|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999954

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=1.3e-08  Score=77.22  Aligned_cols=89  Identities=17%  Similarity=0.168  Sum_probs=57.0

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee----CCCeeEEEECC--E-------------Eec-CC----CCEEEEE--eCCEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH----PLPTMTWQKDG--T-------------ELH-AT----EHYLITT--VESVS   62 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~----~~~~v~W~~~g--~-------------~~~-~~----~~~~~~~--~~~~~   62 (579)
                      ++..|.++.+..|++++|.|.+...    ....+.|++..  .             ... ..    .+..+..  ..+..
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDG   81 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBC
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEE
Confidence            4557889999999999999997532    22379998721  1             111 01    1222211  12346


Q ss_pred             EEEEcCCCCCCCEEEEEEEEcCCe--eeEEEEEEEEE
Q psy16852         63 TLEIINPTKEDIGVYTCKATNIGG--VATCSANLIVL   97 (579)
Q Consensus        63 ~L~i~~~~~~d~G~Y~C~~~~~~g--~~~~~~~~~v~   97 (579)
                      +|+|.+++.+|+|.|+|.+.+..+  .....+.|.|.
T Consensus        82 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            899999999999999999987543  33445566654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.65  E-value=3.7e-08  Score=73.82  Aligned_cols=76  Identities=21%  Similarity=0.409  Sum_probs=55.6

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEE---e-----------c---CCCCEEEEEe-CCEEEEEEcC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTE---L-----------H---ATEHYLITTV-ESVSTLEIIN   68 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~---~-----------~---~~~~~~~~~~-~~~~~L~i~~   68 (579)
                      +...|..+.+.+|++|+|.|...+.....+.|||  .|..   +           .   ...++..... .....|+|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            5667888999999999999998665556899998  2211   0           0   1234444433 3357899999


Q ss_pred             CCCCCCEEEEEEEEcC
Q psy16852         69 PTKEDIGVYTCKATNI   84 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~   84 (579)
                      ++.+|+|.|.|.+...
T Consensus        84 ~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAG   99 (118)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cccccCceEEEEEecC
Confidence            9999999999998643

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=6.8e-09  Score=76.29  Aligned_cols=96  Identities=17%  Similarity=0.254  Sum_probs=55.4

Q ss_pred             eeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        418 IAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      .+.+|+++.|.|.........+.|+|+.....  ......+.......   +.      .+.|     .++..+..   .
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~--~~~i~~y~~~~~~~---~~------~~~y-----~gR~~l~~---n   70 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAI--DKEIARFVPNSNMN---FT------GQAY-----SGREIIYS---N   70 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSG--GGEEEEECSTTCCE---EC------CSSC-----CSSEEECT---T
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCC--ceeeEEEEcCCCcc---cc------CCcc-----eeEEEEcc---c
Confidence            36689999999974333345899999653321  11111121111110   00      0011     01122222   2


Q ss_pred             eEEEEeecccccceeEEEEEEeCCe-eEEEEEEEEE
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAG-SVTCTATLSL  532 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v  532 (579)
                      +.|.|.+++.+|+|.|+|.+.+..+ ....+++|+|
T Consensus        71 gSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             ccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            3599999999999999999988865 4556677765

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=1.1e-07  Score=69.32  Aligned_cols=87  Identities=16%  Similarity=0.179  Sum_probs=55.5

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .+..+++.+|++++|.|.........+.|++..    ++...           .+.+........|      ...+....
T Consensus         6 sP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~----~g~~~-----------~~~~~~~~~~~~~------~~~~~~~~   64 (106)
T d1a0ql1           6 SPSSLSASLGGKVTITCKASQDIKKYIGWYQHK----PGKQP-----------RLLIHYTSTLLPG------IPSRFRGS   64 (106)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEEC----TTSCE-----------EEEEETTTEECTT------CCTTEEEE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCCCCCeEEEECC----CCCcE-----------EEEEEccccccCC------CCcceEee
Confidence            345567899999999999876555579999841    11111           1112111111111      12234455


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .++....|+|.+++.+|+|.|.|.+.+.
T Consensus        65 ~s~~~~~L~I~~~~~~DsA~YyCa~~~~   92 (106)
T d1a0ql1          65 GSGRDYSFSISNLEPEDIATYYCLQYYN   92 (106)
T ss_dssp             EETTEEEEEECSCCGGGCSEEEEEECSS
T ss_pred             cCCCEeeeEehhhcccCCEeEEEEEeCC
Confidence            6677889999999999999999987543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=6.2e-08  Score=72.99  Aligned_cols=100  Identities=16%  Similarity=0.268  Sum_probs=57.8

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeC--CEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRG--KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA  484 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~  484 (579)
                      +|.+...|....+.+|++++|.|.+.+.....+.|++.  |..+. .....+........  ...... .....++    
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~-~~~~l~~~~~~~~~--~~~~~~-~~~~~~~----   72 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLP-QPTFVVYMASSHNK--ITWDEK-LNSSKLF----   72 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSC-CCEEEEEECSSSCC--EEECTT-TTGGGTE----
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcC-ceEEEEeeeccccc--eeeccC-CCCCcEE----
Confidence            46666677788899999999999998877778999983  11110 00111111000000  000000 0000000    


Q ss_pred             ecceeeeeeeCCeeEEEEeecccccceeEEEEEE
Q psy16852        485 SSTETKIMTDGNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       485 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                          .....++....|+|.+++.+|+|.|.|.+.
T Consensus        73 ----s~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          73 ----SAMRDTNNKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             ----EEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ----EEECCCCCEeEEEEcccccCCCEEEEeeEe
Confidence                012234556789999999999999999875

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.62  E-value=1.4e-08  Score=76.00  Aligned_cols=76  Identities=14%  Similarity=0.193  Sum_probs=53.9

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE---Ee----------cCCCCEEEEEe--CCEEEEEEcCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT---EL----------HATEHYLITTV--ESVSTLEIINPTK   71 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~---~~----------~~~~~~~~~~~--~~~~~L~i~~~~~   71 (579)
                      ++..|..+.+.+|++|+|+|.........+.|||-  |+   .|          ....++.....  .....|+|.+++.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            56678899999999999999987655567999982  21   11          01112222222  2345799999999


Q ss_pred             CCCEEEEEEEEcC
Q psy16852         72 EDIGVYTCKATNI   84 (579)
Q Consensus        72 ~d~G~Y~C~~~~~   84 (579)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          83 SDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             cCCccceeeecCC
Confidence            9999999998754

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.61  E-value=5.4e-08  Score=72.08  Aligned_cols=74  Identities=14%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--CeeEEEEC--CEEe------------cCCCCEEEEEe--CCEEEEEEcCCCCC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQKD--GTEL------------HATEHYLITTV--ESVSTLEIINPTKE   72 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~--g~~~------------~~~~~~~~~~~--~~~~~L~i~~~~~~   72 (579)
                      .+|..+.+.+|++|+|.|...+...  ..+.|||.  ++..            ....++.....  .....|.|.+++.+
T Consensus         5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE   84 (111)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc
Confidence            3577899999999999999865432  35999982  2110            12245555443  45789999999999


Q ss_pred             CCEEEEEEEEcC
Q psy16852         73 DIGVYTCKATNI   84 (579)
Q Consensus        73 d~G~Y~C~~~~~   84 (579)
                      |+|.|.|.....
T Consensus        85 Dsa~YyCA~~~~   96 (111)
T d1cd0a_          85 DEADYYCQSYDA   96 (111)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cCcEEEEeeccC
Confidence            999999987543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.60  E-value=5.4e-08  Score=72.77  Aligned_cols=75  Identities=19%  Similarity=0.406  Sum_probs=52.8

Q ss_pred             cccccCceeeeCCCCEEEEEEEEee-CCCeeEEEEC-----CEEe------c-----------CCCCEEEEEe--CCEEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGH-PLPTMTWQKD-----GTEL------H-----------ATEHYLITTV--ESVST   63 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~-~~~~v~W~~~-----g~~~------~-----------~~~~~~~~~~--~~~~~   63 (579)
                      ++..|..+.+.+|++|+|.|.+.+. ....+.|||.     ++.+      .           ...++.....  .....
T Consensus         1 v~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   80 (115)
T d2atpb1           1 LIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPF   80 (115)
T ss_dssp             CEEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCE
T ss_pred             CEeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEE
Confidence            3567899999999999999998753 3457999983     2211      0           1122222222  23568


Q ss_pred             EEEcCCCCCCCEEEEEEEEc
Q psy16852         64 LEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus        64 L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      |+|.+++.+|+|.|.|.+..
T Consensus        81 L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          81 LSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EEECSCCGGGCEEEEEEEEC
T ss_pred             EeecccCCCCCcEEEEeEcC
Confidence            99999999999999998753

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.59  E-value=4.3e-08  Score=72.61  Aligned_cols=74  Identities=20%  Similarity=0.348  Sum_probs=51.2

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE------------Eec----CCCCEEEEEe-CCEEEEEEcCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT------------ELH----ATEHYLITTV-ESVSTLEIINPT   70 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~------------~~~----~~~~~~~~~~-~~~~~L~i~~~~   70 (579)
                      ...|..+.+.+|++++|.|...+ ....+.|||.  |.            ...    ...++..... .....|+|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC
T ss_pred             EECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc
Confidence            45688899999999999998543 2347999982  11            110    1223433322 234789999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy16852         71 KEDIGVYTCKATNI   84 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~   84 (579)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (111)
T d2esve1          82 LEDSGVYFCASSQD   95 (111)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             cCCCceEEEeeeCC
Confidence            99999999987643

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.5e-08  Score=69.18  Aligned_cols=76  Identities=14%  Similarity=0.131  Sum_probs=56.7

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +-+|.|...|.. .|..|++|+|.|.........+.|+|+|......  .  ........+.|.+++.+|+|.|+|....
T Consensus         3 ~PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--~--~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2           3 YGKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--H--QSGEHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             SCCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--E--EECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             CCCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE--E--cCCCcccEEEEeccccccCcEEEEEEEc
Confidence            457888888876 5999999999998632333479999999643322  1  1223457899999999999999998864


Q ss_pred             C
Q psy16852         84 I   84 (579)
Q Consensus        84 ~   84 (579)
                      .
T Consensus        78 ~   78 (96)
T d1ucta2          78 N   78 (96)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.56  E-value=5.5e-08  Score=72.78  Aligned_cols=76  Identities=20%  Similarity=0.289  Sum_probs=54.3

Q ss_pred             cccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEEC--CEE----e---------cCCCCEEEEEe--CCEEEEEEcCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKD--GTE----L---------HATEHYLITTV--ESVSTLEIINPT   70 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~--g~~----~---------~~~~~~~~~~~--~~~~~L~i~~~~   70 (579)
                      ++..|..+.+.+|++|+|.|.... .....+.|||.  |..    +         ....++.....  .....|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            566788999999999999998753 33346899982  111    0         01134444443  346789999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy16852         71 KEDIGVYTCKATNI   84 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~   84 (579)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          82 IEDSAVYFCAMRGD   95 (115)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             ccccccccceeecC
Confidence            99999999998643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.54  E-value=1.7e-07  Score=68.31  Aligned_cols=86  Identities=16%  Similarity=0.277  Sum_probs=54.4

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .|..+.+.+|++++|.|.........+.|++..    ++....           +.+........|      ...++...
T Consensus         7 sP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~----~g~~~~-----------~~~~~~~~~~~~------~~~rfs~~   65 (106)
T d1i8ka_           7 SPASLSVATGEKVTIRCMTSTDIDDDMNWYQQK----PGEPPK-----------FLISEGNTLRPG------VPSRFSSS   65 (106)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEEC----TTSCCE-----------EEEETTTEECTT------SCTTEEEE
T ss_pred             eCCEEEECCCCCEEEEEEeCCCCCccEEEEeCC----CCCceE-----------EEEeccCccccC------CCcceeEe
Confidence            345566899999999998876555679999841    111111           111111111111      12233445


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ..+....|+|.+++.+|+|.|.|.+.+
T Consensus        66 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          66 GTGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             EETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCCeeeecccCCccccCEEEeEecCc
Confidence            566778899999999999999998654

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.1e-07  Score=68.62  Aligned_cols=73  Identities=21%  Similarity=0.260  Sum_probs=50.2

Q ss_pred             cCceeeeCCCCEEEEEEEEeeC--CCeeEEEECCE--E---e---------cCCCCEEEEEe--CCEEEEEEcCCCCCCC
Q psy16852         13 IQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDGT--E---L---------HATEHYLITTV--ESVSTLEIINPTKEDI   74 (579)
Q Consensus        13 p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g~--~---~---------~~~~~~~~~~~--~~~~~L~i~~~~~~d~   74 (579)
                      +..+.+.+|++|+|.|......  ...+.|||...  .   +         ....++.....  .+...|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            4568899999999999875432  23578998221  1   1         11233433322  4578999999999999


Q ss_pred             EEEEEEEEcCC
Q psy16852         75 GVYTCKATNIG   85 (579)
Q Consensus        75 G~Y~C~~~~~~   85 (579)
                      |.|.|.+....
T Consensus        83 G~Y~C~v~~~~   93 (108)
T d1hkfa_          83 GHYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEecCC
Confidence            99999987543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.8e-07  Score=70.24  Aligned_cols=87  Identities=11%  Similarity=0.124  Sum_probs=59.6

Q ss_pred             CCCceEEccCCcEEEEEEEEee---cCCeEEEEECCEE-----c---------cCCCCceEEEcCCCCeEEEEECcCCCC
Q psy16852        111 PLKPVIAEAQSPATLKATVTGR---PTPSICWYRGKEE-----I---------LPDNGHTMEFNPTTGECVLSISEATPQ  173 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~---p~~~i~W~~~~~~-----~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~  173 (579)
                      .|..+.+.+|++++|.|.....   ....+.|++....     +         ....+..+..+...+..+|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            4567888999999999987422   2256789884321     1         112344566667778899999999999


Q ss_pred             CCeEEEEEEEcCCceeEEEEEEEE
Q psy16852        174 DEAVYSVKAVNTFGRAECRANLVL  197 (579)
Q Consensus       174 d~G~Y~C~~~~~~~~~~~~~~~~v  197 (579)
                      |+|.|.|.+............+.|
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V  108 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEV  108 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEE
Confidence            999999998655444444445544

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.53  E-value=6.3e-08  Score=71.82  Aligned_cols=73  Identities=18%  Similarity=0.267  Sum_probs=50.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC-CeeEEEEC--CEE---e-------cCCCCEEEE--EeCCEEEEEEcCCCCCCCE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL-PTMTWQKD--GTE---L-------HATEHYLIT--TVESVSTLEIINPTKEDIG   75 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~-~~v~W~~~--g~~---~-------~~~~~~~~~--~~~~~~~L~i~~~~~~d~G   75 (579)
                      .+|..+.+.+|++|+|.|...+... ..+.|||.  |..   |       ......+..  .......|.|.+++.+|+|
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence            4578899999999999999865433 35899992  211   1       011122222  2234678999999999999


Q ss_pred             EEEEEEEc
Q psy16852         76 VYTCKATN   83 (579)
Q Consensus        76 ~Y~C~~~~   83 (579)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99998753

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.53  E-value=6.4e-08  Score=71.86  Aligned_cols=73  Identities=23%  Similarity=0.414  Sum_probs=50.7

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE------------Eec----CCCCEEEEEe-CCEEEEEEcCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT------------ELH----ATEHYLITTV-ESVSTLEIINPT   70 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~------------~~~----~~~~~~~~~~-~~~~~L~i~~~~   70 (579)
                      ...|..+.+.+|++++|.|.... ....+.|||.  |+            ...    ...++..... .....|+|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQ   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCC
Confidence            45688899999999999998643 3347999982  11            000    1123322222 235789999999


Q ss_pred             CCCCEEEEEEEEc
Q psy16852         71 KEDIGVYTCKATN   83 (579)
Q Consensus        71 ~~d~G~Y~C~~~~   83 (579)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (112)
T d1kgce1          82 QEDSAVYLCASSL   94 (112)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCEEEEEeeeC
Confidence            9999999998864

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=3.5e-07  Score=68.38  Aligned_cols=72  Identities=21%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCC---eeEEEEC--CEE---e------------cCCCCEEEEEeCCEEEEEEcCCCC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKD--GTE---L------------HATEHYLITTVESVSTLEIINPTK   71 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~--g~~---~------------~~~~~~~~~~~~~~~~L~i~~~~~   71 (579)
                      +|..+.+.+|++|+|.|........   .+.|||.  |+.   +            ................|.|.+++.
T Consensus         5 QP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (117)
T d1dqta_           5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA   84 (117)
T ss_dssp             CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG
T ss_pred             CCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc
Confidence            3778899999999999998643332   4789982  221   1            111223445556778999999999


Q ss_pred             CCCEEEEEEEEc
Q psy16852         72 EDIGVYTCKATN   83 (579)
Q Consensus        72 ~d~G~Y~C~~~~   83 (579)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (117)
T d1dqta_          85 VDTGLYLCKVEL   96 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCEeEEEEEec
Confidence            999999998753

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.51  E-value=6.2e-08  Score=71.97  Aligned_cols=76  Identities=18%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CE-E--e-c------CCCCEEEEE---eCCEEEEEEcCCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GT-E--L-H------ATEHYLITT---VESVSTLEIINPTKED   73 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~-~--~-~------~~~~~~~~~---~~~~~~L~i~~~~~~d   73 (579)
                      +...|..+.+.+|++++|.|.... ....+.|||.  |. .  + .      .........   ......|+|.+++.+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            456789999999999999999864 3347999982  11 1  0 0      001111111   1235689999999999


Q ss_pred             CEEEEEEEEcCC
Q psy16852         74 IGVYTCKATNIG   85 (579)
Q Consensus        74 ~G~Y~C~~~~~~   85 (579)
                      +|.|.|.+....
T Consensus        83 sa~YyCa~~~~~   94 (113)
T d1h5ba_          83 SGTYFCAAEASS   94 (113)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CEEEEEEecCCC
Confidence            999999987543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.51  E-value=4.5e-08  Score=72.65  Aligned_cols=77  Identities=13%  Similarity=0.281  Sum_probs=53.2

Q ss_pred             CccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EE---e------------cCCCCEEEE-EeCCEEEEEEcC
Q psy16852          7 PRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TE---L------------HATEHYLIT-TVESVSTLEIIN   68 (579)
Q Consensus         7 p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~---~------------~~~~~~~~~-~~~~~~~L~i~~   68 (579)
                      +.++..|..+.+.+|+.++|.|.... ....+.|||..  ..   |            ....++... .......|+|.+
T Consensus         2 ~~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (113)
T d1nfdb1           2 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   80 (113)
T ss_dssp             CSCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCS
T ss_pred             CCEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecc
Confidence            34667899999999999999998643 23479999832  10   1            011222222 223357899999


Q ss_pred             CCCCCCEEEEEEEEcC
Q psy16852         69 PTKEDIGVYTCKATNI   84 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~~   84 (579)
                      ++.+|+|.|.|.+...
T Consensus        81 ~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          81 LELEDSAMYFCASSLR   96 (113)
T ss_dssp             CCGGGCEEECEEEESS
T ss_pred             cCcCCceeEEEEeecC
Confidence            9999999999987643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.51  E-value=6.1e-08  Score=71.59  Aligned_cols=76  Identities=17%  Similarity=0.266  Sum_probs=54.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e---------cCCCCEEEEEe--CCEEEEEEcCCCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L---------HATEHYLITTV--ESVSTLEIINPTKE   72 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~---------~~~~~~~~~~~--~~~~~L~i~~~~~~   72 (579)
                      +...|..+.+.+|++|+|.|.........+.|||.  |..   +         ....++.....  .....|.|.+++.+
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            45678889999999999999986554557999982  211   1         01123333322  23578999999999


Q ss_pred             CCEEEEEEEEcC
Q psy16852         73 DIGVYTCKATNI   84 (579)
Q Consensus        73 d~G~Y~C~~~~~   84 (579)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (110)
T d1ac6a_          83 DSAVYYCALSGG   94 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCcccceeecCC
Confidence            999999987653

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.50  E-value=1.3e-07  Score=70.23  Aligned_cols=75  Identities=13%  Similarity=0.334  Sum_probs=51.8

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e------------cCCCCEEEE-EeCCEEEEEEcCCC
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L------------HATEHYLIT-TVESVSTLEIINPT   70 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~------------~~~~~~~~~-~~~~~~~L~i~~~~   70 (579)
                      +...|..+.+.+|++|+|.|.... ....+.|||.  |..   +            ....++... .......|+|.+++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            556789999999999999998642 3347899982  211   0            011222222 12335789999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy16852         71 KEDIGVYTCKATNI   84 (579)
Q Consensus        71 ~~d~G~Y~C~~~~~   84 (579)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          82 TNQTSMYLCASSST   95 (113)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             cCCcccEEeeEccC
Confidence            99999999988643

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.3e-07  Score=66.02  Aligned_cols=88  Identities=17%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      .+|.+...+... +..|++|+|.|... .....+.|+++|.......  .........+.|.+++..|+|.|+|...+..
T Consensus         3 PKPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1           3 PKPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeeCCCc-ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            356666665544 67899999999854 4455899999986543211  1112345689999999999999999988776


Q ss_pred             eeeEEEEEEEEE
Q psy16852        288 GEARTSGSVTIT  299 (579)
Q Consensus       288 g~~~~~~~~~v~  299 (579)
                      .....+..+.+.
T Consensus        81 ~~S~~Sd~leL~   92 (95)
T d1olla1          81 LWSEPSNLLDLV   92 (95)
T ss_dssp             EECCCCCCEEEE
T ss_pred             CccCCCCCEEEE
Confidence            654444444443

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.48  E-value=1.3e-07  Score=70.40  Aligned_cols=74  Identities=14%  Similarity=0.273  Sum_probs=51.9

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEE--CCEEe---------------cCCCCEEEEEe-CCEEEEEEcCCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQK--DGTEL---------------HATEHYLITTV-ESVSTLEIINPTK   71 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~--~g~~~---------------~~~~~~~~~~~-~~~~~L~i~~~~~   71 (579)
                      ++.|..+.+.+|++|+|.|...+ ....+.|||  .|+..               ....++..... .....|+|.+++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL   81 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             EeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc
Confidence            45688899999999999998644 234799998  22211               11123333222 3357899999999


Q ss_pred             CCCEEEEEEEEcC
Q psy16852         72 EDIGVYTCKATNI   84 (579)
Q Consensus        72 ~d~G~Y~C~~~~~   84 (579)
                      +|+|.|.|.+...
T Consensus        82 ~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          82 GDSALYLCASSLA   94 (113)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             ccceeeeeeeeCC
Confidence            9999999988643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=8.9e-08  Score=72.58  Aligned_cols=74  Identities=14%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeC-------CCeeEEEECCEEe---------------cC--CCCEEEEEe--CCEEEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHP-------LPTMTWQKDGTEL---------------HA--TEHYLITTV--ESVSTLE   65 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~-------~~~v~W~~~g~~~---------------~~--~~~~~~~~~--~~~~~L~   65 (579)
                      .|.++.|.+|+.|+|.|.+....       ...+.||+.+..-               ..  ..++.+...  .+..+|+
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   86 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence            47889999999999999985221       1257898854321               00  123333221  2467899


Q ss_pred             EcCCCCCCCEEEEEEEEcCC
Q psy16852         66 IINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      |.+++.+|+|.|.|++....
T Consensus        87 I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEETT
T ss_pred             ECCCChHHCEEEEEEEEeCC
Confidence            99999999999999997643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.47  E-value=4.1e-07  Score=66.05  Aligned_cols=86  Identities=19%  Similarity=0.232  Sum_probs=53.7

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      |..+++.+|++++|.|.........+.|++..    .+...           .+.+......+.|      ..+......
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~----~g~~~-----------~~~~~~~~~~~~~------~~~~~~~~~   66 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQK----PDGTI-----------KRLIYDATKLDSG------APKRFSGSR   66 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEEC----TTSCE-----------EEEEETTTEECTT------SCTTEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcC----CCCcc-----------eeEEeccccccCC------CCCceEecc
Confidence            45566889999999999876666679999831    11111           1111111111111      112233445


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ++....|.|.+++.+|+|.|.|.+.+.
T Consensus        67 ~~~~~~L~I~~l~~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          67 SGSDYSLTISSLESEDFADYYCLQYAS   93 (107)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             cCCEEEEEEhhhcccCCeEEEEecCcC
Confidence            566778999999999999999977543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.47  E-value=5e-07  Score=67.12  Aligned_cols=87  Identities=14%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccC---CCceeEEEEeecce
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATP---QDEAVYSVKASSTE  488 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~---~d~g~y~c~~~~~~  488 (579)
                      .++..+.+.+|+.++|.|.........+.|++..    ++....           +.+.....   ...+.|.       
T Consensus         6 Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~----~g~~~~-----------~l~~~~~~~~~~~~~~~~-------   63 (115)
T d1lp9e1           6 QTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQH----LNEAPK-----------LLLKSFTDNKRPEHQGFH-------   63 (115)
T ss_dssp             ECCSEEEEETTSCEEECEEEECSSSCCEEEEEEC----TTSCCE-----------EEEESCSSTTCCCCSSCE-------
T ss_pred             cCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeC----CCCcee-----------eeeeeeeccCCcceeeee-------
Confidence            3445567899999999999887767789999842    111111           11111111   1111221       


Q ss_pred             eeeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        489 TKIMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       489 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ...........|.|.+++.+|+|.|.|.+...
T Consensus        64 ~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          64 ATLHKSSSSFHLQKSSAQLSDSALYYCALFLA   95 (115)
T ss_dssp             ECCBGGGTBCCEEESSCCGGGCEEEEEEEEEC
T ss_pred             eeccCCCCeEEeeccccccccCccceEEEEcC
Confidence            11223445667999999999999999988654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.47  E-value=3.4e-07  Score=66.97  Aligned_cols=87  Identities=15%  Similarity=0.229  Sum_probs=55.1

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .+..+++.+|++++|.|.........+.|++..    ++....           +.+........+      ...++...
T Consensus         7 ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~----~g~~~~-----------~l~~~~~~~~~~------~~~~fs~~   65 (107)
T d1j1pl_           7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQK----SHESPR-----------LLIKYASQSISG------IPSRFSGS   65 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEEC----TTSCCE-----------EEEETTTEECTT------SCTTEEEE
T ss_pred             cCCeEEECCCCCEEEEEEecCCCCcceEEEEeC----CCCccE-----------EeeecccCCCce------eCCcceec
Confidence            345566999999999999875555679999842    111111           111111110000      12234456


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .++....|+|.+++.+|+|.|.|.+.+.
T Consensus        66 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          66 GSGTDFTLSINSVETEDFGMYFCQQANS   93 (107)
T ss_dssp             EETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ccCCEEEEEEcccCcCCCEEEEEEcCCC
Confidence            6777889999999999999999976543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.46  E-value=4.1e-07  Score=66.24  Aligned_cols=87  Identities=17%  Similarity=0.257  Sum_probs=55.8

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      ..|..+.+.+|++++|.|...+.-...+.|++..    ++....           +.+........|      ..+++..
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~----~g~~p~-----------~l~~~~~~~~~~------~~~~f~~   63 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQK----PGKAPK-----------LLIYKASTLKTG------VPSRFSG   63 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEEC----TTSCCE-----------EEEETTTEECTT------SCTTEEE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecC----CCCCCE-----------EEEEccccCCCC------cCCceee
Confidence            3455667899999999999876555579999842    111111           111111111111      1123445


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ..++....|+|.+++.+|+|.|.|.+..
T Consensus        64 ~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          64 SGSGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             EEETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             eccCCEEEEEEccccccCCCcEeeeeCC
Confidence            5677788899999999999999998764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.46  E-value=4.6e-07  Score=67.65  Aligned_cols=76  Identities=20%  Similarity=0.459  Sum_probs=55.3

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CEE---e---------cCCCCEEEEEe--CCEEEEEEcCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GTE---L---------HATEHYLITTV--ESVSTLEIINP   69 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~~---~---------~~~~~~~~~~~--~~~~~L~i~~~   69 (579)
                      .++.++..+.+.+|++++|+|...+..  ...+.|||.  |..   +         ....++.....  .....|.|.++
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~   82 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc
Confidence            456678889999999999999987543  236999982  211   1         11245555543  34689999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy16852         70 TKEDIGVYTCKATN   83 (579)
Q Consensus        70 ~~~d~G~Y~C~~~~   83 (579)
                      +.+|+|.|.|....
T Consensus        83 ~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          83 SERDEGSYYCACDT   96 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCCceeecCccc
Confidence            99999999998754

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.46  E-value=1.3e-07  Score=70.10  Aligned_cols=73  Identities=14%  Similarity=0.273  Sum_probs=49.5

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e----------cC---CCCEEEEEeCCEEEEEEcCCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L----------HA---TEHYLITTVESVSTLEIINPTK   71 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~----------~~---~~~~~~~~~~~~~~L~i~~~~~   71 (579)
                      ++.|....+.+|++++|+|.... ....+.|||.  |..   |          ..   ..............|.|.++..
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            45688899999999999998753 3447999981  211   0          00   1111111222346899999999


Q ss_pred             CCCEEEEEEEEc
Q psy16852         72 EDIGVYTCKATN   83 (579)
Q Consensus        72 ~d~G~Y~C~~~~   83 (579)
                      +|+|.|.|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999998753

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.9e-06  Score=62.31  Aligned_cols=83  Identities=17%  Similarity=0.191  Sum_probs=53.1

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEe-eCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTG-RPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      .|.+..+.   .+.+|+.++|.|.+.+ +|.+  .+.|++++..+......                 ......|.|+  
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~-----------------~~~~~~~~~~--   61 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL-----------------EDADRKSLET--   61 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC-----------------SCCSSCCCEE--
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccc-----------------cccccCCcce--
Confidence            56665332   3779999999999875 6754  68999998876321100                 0111222222  


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                                  ..+.|++.....+|...|+|+|.|..+.
T Consensus        62 ------------~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          62 ------------KSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             ------------EEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ------------eeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence                        2345777766666677899999988654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=3.9e-07  Score=66.46  Aligned_cols=87  Identities=17%  Similarity=0.262  Sum_probs=54.6

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      ..|..+++.+|++++|.|...+.....+.|++..    ++....           +.+........      ....++..
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~----~g~~~~-----------~i~~~~~~~~~------~~~~rfs~   64 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQK----PGNAPR-----------LLISGATSLET------WVPSRFSG   64 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEEC----TTSCCE-----------EEEETTTEECT------TSCTTEEE
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcC----CCccce-----------eEEeeccccCC------ccccccce
Confidence            3445567899999999999876655579999942    111111           11111111000      11223344


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ..++....|+|.+++.+|+|.|.|.+..
T Consensus        65 ~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          65 SDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             ECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             ecCCCeEEeEEcccccccCCcEEEeecc
Confidence            5566778899999999999999998754

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=5.2e-07  Score=65.78  Aligned_cols=82  Identities=17%  Similarity=0.260  Sum_probs=53.7

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      ...+.+|++++|.|...+.....+.|++..    ++....           +.+........|      ....+....++
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~----~g~~~~-----------~l~~~~~~~~~~------~~~~f~~~~~~   67 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQK----PGQQPK-----------LLIYKASNLASG------VPARFSGSGSG   67 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEEC----TTSCCE-----------EEEETTTEECTT------CCTTEEEEEET
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecC----CCCCcE-----------EEEEecccccCC------cCCceeeecCC
Confidence            467899999999999976656679999842    111111           111111111111      12344556677


Q ss_pred             CeeEEEEeecccccceeEEEEEE
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      ....|+|.+++.+|+|.|.|.+.
T Consensus        68 ~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          68 TDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CEEEeEECCcChhhCCCcccccc
Confidence            78899999999999999999654

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.44  E-value=5.7e-07  Score=65.79  Aligned_cols=87  Identities=17%  Similarity=0.225  Sum_probs=54.6

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      ..|..+.+.+|++++|.|.........+.|++..    ++.....           .+........|      .......
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~----~g~~~~~-----------l~~~~~~~~~~------~~~~~~~   64 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQK----PGQSPVL-----------LIYGASNRYTG------VPDRFTG   64 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEEC----TTSCCEE-----------EEETTTEECTT------CCTTEEE
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcc----cCCCCEE-----------EEEecccccCC------ccceEEe
Confidence            3345567899999999999876665679999842    1111111           11110000101      1123344


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ..+.....|+|.+++.+|+|.|.|.+..
T Consensus        65 ~~~~~~~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          65 SGSATDFTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             EEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             eccCCeeecEEHhheecCCceEEEEecC
Confidence            5566778899999999999999998753

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.1e-07  Score=65.53  Aligned_cols=72  Identities=15%  Similarity=0.230  Sum_probs=55.0

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (579)
                      -+|.|...|..+ |..|++|+|.|... .....+.|+|+|.....    ..........+.|.+++.+|+|.|+|...
T Consensus         3 pkPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~----~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESCSE-EETTCEEEEEEECS-SSCSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCCCc-ccCCCcEEEEECCC-CCCCEEEEEECCCccce----eecCCCceeEEEecccChhcCceEEEEeE
Confidence            478888888766 88999999999874 34458999998764321    12233456889999999999999999743

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=8.5e-07  Score=65.69  Aligned_cols=76  Identities=13%  Similarity=0.172  Sum_probs=54.7

Q ss_pred             cCCCceEEccCCcEEEEEEEEee-cCCeEEEEEC--CE-E--c----------cCCCCceEEEcCCCCeEEEEECcCCCC
Q psy16852        110 KPLKPVIAEAQSPATLKATVTGR-PTPSICWYRG--KE-E--I----------LPDNGHTMEFNPTTGECVLSISEATPQ  173 (579)
Q Consensus       110 ~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~--~~-~--~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~  173 (579)
                      ..|..+.+.+|++++|.|.+.+. ....+.||+.  +. +  +          ....++....+.......|.|.+++.+
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   83 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   83 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcC
Confidence            34566788999999999998543 3467899983  11 1  1          122344555555666788999999999


Q ss_pred             CCeEEEEEEEcC
Q psy16852        174 DEAVYSVKAVNT  185 (579)
Q Consensus       174 d~G~Y~C~~~~~  185 (579)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (114)
T d3bp5a1          84 DSGIYLCGAISL   95 (114)
T ss_dssp             GCEEEEEEEECS
T ss_pred             CCeEEEEEEEeC
Confidence            999999988654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.43  E-value=2.9e-07  Score=65.89  Aligned_cols=80  Identities=10%  Similarity=0.108  Sum_probs=57.7

Q ss_pred             CcCCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          2 AEVLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         2 ~~~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      .-+-+|.|...|.. .|..|++|+|.|... .+...+.|+|+|...... ............+.|..++..|+|.|+|..
T Consensus         2 G~~pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y   78 (99)
T d1nkra2           2 GLYEKPSLSAQPGP-TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLGPATHGGTYRCFG   78 (99)
T ss_dssp             CSSCCCEEEEESCS-EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEEECCSCEEEEEEE
T ss_pred             CCCCCCEEEEeCCC-cccCCCeEEEEECCC-CCccEEEEEECCCccccE-EEccccCCccEEEEEeccccccCEEEEEEe
Confidence            44668999998876 489999999999874 344589999998643211 111123345567888888899999999987


Q ss_pred             EcC
Q psy16852         82 TNI   84 (579)
Q Consensus        82 ~~~   84 (579)
                      ...
T Consensus        79 ~~~   81 (99)
T d1nkra2          79 SFH   81 (99)
T ss_dssp             EET
T ss_pred             ecC
Confidence            643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.42  E-value=1.1e-06  Score=65.36  Aligned_cols=95  Identities=19%  Similarity=0.278  Sum_probs=53.2

Q ss_pred             ecCCCceeeecCCCeEEEEEEEee-CCCeEEEeeCCEEcCCCCCee-EEEcCCCCeEEEEEccccCCCceeEEEEeecce
Q psy16852        411 TKPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHT-MEFNPTTGECVLSISEATPQDEAVYSVKASSTE  488 (579)
Q Consensus       411 ~~~~~~~~~~~g~~~~l~C~~~g~-p~~~v~W~~~~~~l~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~  488 (579)
                      +..+....+.+|++++|.|...+. ....+.|++..    ++.... +.+. .+...     .......++|....    
T Consensus         4 tQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~----~g~~~~~l~~~-~~~~~-----~~~~~~~~rf~~~~----   69 (116)
T d1tvda_           4 TQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIR----PDYSFQFVFYG-DDSRS-----EGADFTQGRFSVKH----   69 (116)
T ss_dssp             ECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEEC----TTSCEEEEEEE-CSSCE-----EECGGGTTTEEEEE----
T ss_pred             EccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeC----CCCceEEeeec-ccccc-----cccCccceEEEEEe----
Confidence            344556679999999999998643 45689999821    111111 1110 00000     00111112232111    


Q ss_pred             eeeeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        489 TKIMTDGNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       489 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                         ..+.....|+|.+++.+|+|.|.|.+....+
T Consensus        70 ---~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          70 ---ILTQKAFHLVISPVRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             ---EGGGTEEEEEESSCCGGGCEEEEEEEECTTT
T ss_pred             ---cCceeEEeeeecCccccccccceeeEecCCC
Confidence               1223446799999999999999998876543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.42  E-value=2.2e-07  Score=69.14  Aligned_cols=76  Identities=18%  Similarity=0.303  Sum_probs=55.1

Q ss_pred             cCCCceEEccCCcEEEEEEEEeecCCeEEEEECCE--E---c---------cCCCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852        110 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE--E---I---------LPDNGHTMEFNPTTGECVLSISEATPQDE  175 (579)
Q Consensus       110 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~---~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (579)
                      ..+..+.+.+|+.++|.|.........+.||+...  .   +         ....+............+|.|.+++.+|+
T Consensus         5 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Ds   84 (114)
T d2cdea1           5 QSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDS   84 (114)
T ss_dssp             EECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGC
T ss_pred             eeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhC
Confidence            44667788999999999998765667899998321  0   1         01122333334455678999999999999


Q ss_pred             eEEEEEEEcC
Q psy16852        176 AVYSVKAVNT  185 (579)
Q Consensus       176 G~Y~C~~~~~  185 (579)
                      |.|.|.+...
T Consensus        85 g~Y~Ca~~~~   94 (114)
T d2cdea1          85 ASYICVVSDR   94 (114)
T ss_dssp             SEEEEEEECS
T ss_pred             cccceeeecC
Confidence            9999999764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3e-07  Score=66.35  Aligned_cols=88  Identities=13%  Similarity=0.131  Sum_probs=58.9

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEE--eccCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEc
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKE--IVSKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVN  285 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~--i~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n  285 (579)
                      .+|.+...+.. .+..|++|+|.|... .+...+.|+++|..  .....  .........+.|.+++.+|+|.|+|...+
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            46677666654 477899999999864 45568999987632  11111  11223445799999999999999999988


Q ss_pred             CCeeeEEEEEEEEE
Q psy16852        286 EAGEARTSGSVTIT  299 (579)
Q Consensus       286 ~~g~~~~~~~~~v~  299 (579)
                      .......+..+.+.
T Consensus        84 ~~~~S~~Sdpl~L~   97 (99)
T d1ucta1          84 GHYRFRYSDTLELV   97 (99)
T ss_dssp             TTTEEEECCCEEEE
T ss_pred             CCcccCCCCCEEEE
Confidence            77655555455443

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.9e-06  Score=63.26  Aligned_cols=69  Identities=13%  Similarity=0.136  Sum_probs=45.0

Q ss_pred             eeCCCCEEEEEEEEe-eCCC--eeEEEECCEEecCCCCEEEE-EeC---CEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         18 SHQEQPALFTCKVEG-HPLP--TMTWQKDGTELHATEHYLIT-TVE---SVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        18 v~~G~~~~l~C~~~~-~~~~--~v~W~~~g~~~~~~~~~~~~-~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      +.+|+.++|+|.+.+ .|.+  .+.||++++.+......... ..+   ..+.|++.....+|...|+|+|.+..+
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID   88 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcC
Confidence            779999999999976 4543  69999999877421100000 000   125677765555556699999997653

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.39  E-value=4.4e-07  Score=67.28  Aligned_cols=78  Identities=17%  Similarity=0.276  Sum_probs=56.2

Q ss_pred             ecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--EE---c---------cCCCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852        109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EE---I---------LPDNGHTMEFNPTTGECVLSISEATPQD  174 (579)
Q Consensus       109 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d  174 (579)
                      ...+..+.+.+|+.++|.|.+.+.....+.||+..  +.   +         ....+.............|.|.++..+|
T Consensus         4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (113)
T d2bnqd1           4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGD   83 (113)
T ss_dssp             ECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCC
Confidence            34566778899999999999865555679999832  11   1         0122344445556677899999999999


Q ss_pred             CeEEEEEEEcCC
Q psy16852        175 EAVYSVKAVNTF  186 (579)
Q Consensus       175 ~G~Y~C~~~~~~  186 (579)
                      +|.|.|.+....
T Consensus        84 sg~YyCa~~~~~   95 (113)
T d2bnqd1          84 SATYLCAVRPTS   95 (113)
T ss_dssp             CEEEEEEEEESS
T ss_pred             CcEEeEeEecCC
Confidence            999999987543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.39  E-value=1.8e-07  Score=69.65  Aligned_cols=74  Identities=15%  Similarity=0.337  Sum_probs=50.6

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEE---e------------cCCCCEEEEE-eCCEEEEEEcCCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTE---L------------HATEHYLITT-VESVSTLEIINPTK   71 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~---~------------~~~~~~~~~~-~~~~~~L~i~~~~~   71 (579)
                      +..|..+.+.+|++|+|+|.... ....+.|||.  |..   +            ....++.... ......|+|.+++.
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             EEcCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            45688899999999999999753 3447999982  111   0            0111222111 12356799999999


Q ss_pred             CCCEEEEEEEEcC
Q psy16852         72 EDIGVYTCKATNI   84 (579)
Q Consensus        72 ~d~G~Y~C~~~~~   84 (579)
                      +|+|.|.|.+...
T Consensus        82 ~DSa~YyCa~~~~   94 (114)
T d1ogae1          82 NPTAFYLCASSSR   94 (114)
T ss_dssp             CCCEEEEEEEESS
T ss_pred             CCceeEEEeeccC
Confidence            9999999987643

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.39  E-value=3.6e-07  Score=65.03  Aligned_cols=64  Identities=16%  Similarity=0.306  Sum_probs=45.7

Q ss_pred             CCCEEEEEEEEeeCCCeeEEEEC--CEE---e--------cCCCCEEEEEe--CCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852         21 EQPALFTCKVEGHPLPTMTWQKD--GTE---L--------HATEHYLITTV--ESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus        21 G~~~~l~C~~~~~~~~~v~W~~~--g~~---~--------~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      |++|+|.|.........+.|||.  |..   |        ....++.....  ....+|+|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            89999999987666668999982  111   1        12234544433  33578999999999999999988643

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.38  E-value=7.5e-07  Score=64.96  Aligned_cols=87  Identities=18%  Similarity=0.310  Sum_probs=54.0

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      ..|...++.+|++++|.|.........+.|++..    .+....           +.+......+.|      ...+...
T Consensus         6 Q~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~----~g~~~~-----------~l~~~~~~~~~~------~~~~~~~   64 (107)
T d1tjgl1           6 QSPSSLSASVGDRITITCRASQGVTSALAWYRQK----PGSPPQ-----------LLIYDASSLESG------VPSRFSG   64 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEEC----TTSCCE-----------EEEETTTEECTT------SCTTEEE
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCCccEEEEecc----CCccce-----------EEEeecccccCC------CCcceEE
Confidence            3455567889999999999875556689999842    111111           111111111111      1122334


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ..++....|+|.+++.+|+|.|.|.+.+
T Consensus        65 ~~~~~~~~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          65 SGSGTEFTLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             EEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             eccCCEEEEEeccceeCcCceEEEEECc
Confidence            4567778899999999999999997653

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.3e-06  Score=63.12  Aligned_cols=88  Identities=16%  Similarity=0.256  Sum_probs=54.9

Q ss_pred             CCCeeec-CCCceeeecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEE
Q psy16852        406 EAPKFTK-PLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSV  482 (579)
Q Consensus       406 ~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c  482 (579)
                      .+|.+.. ++.... ..++.++|.|.+.|+ |.. .|.|+++|..+..+..               .........|.|..
T Consensus         4 ~~P~V~~~~ps~~~-~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~---------------~~~~~~~~dgtys~   67 (102)
T d1rzfl2           4 AAPSVTLFPPSSEE-LQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVE---------------TTTPSKQSNNKYAA   67 (102)
T ss_dssp             BCCEEEEECCCHHH-HHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEE---------------ECCCEECTTSCEEE
T ss_pred             CCCEEEEECCCHHH-hcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEE---------------eCCcEECCCCEEEE
Confidence            3555543 222222 246779999999995 433 8999999988753311               11222333455644


Q ss_pred             EeecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCCee
Q psy16852        483 KASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       483 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      .              +.|.|...+......|+|.+.+....
T Consensus        68 ~--------------S~L~v~~~~w~~~~~ytC~V~H~~~~   94 (102)
T d1rzfl2          68 S--------------SYLSLTPEQWKSHRSYSCQVTHEGST   94 (102)
T ss_dssp             E--------------EEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             E--------------EEEEECHHHhCCCCEEEEEEEECCcc
Confidence            4              33888777766667899999987544

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2e-06  Score=62.02  Aligned_cols=75  Identities=17%  Similarity=0.276  Sum_probs=49.7

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .++.++|.|.+.|+ |.. +|.|+++|..+..+.               ..........|.|...              +
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~---------------~t~~~~~~~dgtys~~--------------S   69 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGM---------------ETTQPSKQSNNKYMAS--------------S   69 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE---------------EECCCEECTTSCEEEE--------------E
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCe---------------EecccEEcCCCCEEEE--------------E
Confidence            35678999999986 433 899999998874321               1111122334555433              3


Q ss_pred             EEEEeecccccceeEEEEEEeCCeeE
Q psy16852        499 VLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                      .|.|..-+......|+|.|.+.....
T Consensus        70 ~L~v~~~~w~~~~~ytC~V~H~~~~~   95 (102)
T d1q0xl2          70 YLTLTARAWERHSSYSCQVTHEGHSS   95 (102)
T ss_dssp             EEEEEHHHHTTCCEEEEEEEETTEEE
T ss_pred             EEEECHHHhCCCCEEEEEEEECCccE
Confidence            48887777777889999999875543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.38  E-value=1.4e-06  Score=64.25  Aligned_cols=75  Identities=17%  Similarity=0.244  Sum_probs=55.8

Q ss_pred             cCCCceEEccCCcEEEEEEEEee--cCCeEEEEEC--CE----EccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEE
Q psy16852        110 KPLKPVIAEAQSPATLKATVTGR--PTPSICWYRG--KE----EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  181 (579)
Q Consensus       110 ~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~--~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  181 (579)
                      ..|..+.+.+|++++|.|.+++.  ....+.||+.  +.    .+....+.....+.......|.|.+++.+|+|.|.|.
T Consensus         5 Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   84 (113)
T d1vesa_           5 QTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQ   84 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             eeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeee
Confidence            34566788899999999998643  3367999973  21    2334455555666666678999999999999999998


Q ss_pred             EEc
Q psy16852        182 AVN  184 (579)
Q Consensus       182 ~~~  184 (579)
                      +..
T Consensus        85 ~~~   87 (113)
T d1vesa_          85 AFY   87 (113)
T ss_dssp             EEE
T ss_pred             eec
Confidence            853

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.37  E-value=1.5e-06  Score=65.05  Aligned_cols=74  Identities=24%  Similarity=0.408  Sum_probs=53.7

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--C-------------EEec----CCCCEEEEEe--CCEEEEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--G-------------TELH----ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g-------------~~~~----~~~~~~~~~~--~~~~~L~   65 (579)
                      +..++..+.+.+|++++|.|.+.|..  ...+.|||.  |             ....    ...++.....  .....|+
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   83 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence            45556678899999999999998753  336899982  1             1111    1235666544  3467899


Q ss_pred             EcCCCCCCCEEEEEEEE
Q psy16852         66 IINPTKEDIGVYTCKAT   82 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~   82 (579)
                      |.+++.+|+|.|.|.+.
T Consensus        84 i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          84 IHNVEKQDIATYYCALW  100 (123)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccccccCcEEEEeee
Confidence            99999999999999875

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=7.8e-07  Score=64.74  Aligned_cols=87  Identities=17%  Similarity=0.290  Sum_probs=53.8

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .|....+.+|++++|.|.........+.|++..    ......           +.+........|      ........
T Consensus         7 ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~----~g~~~~-----------~l~~~~~~~~~~------~~~~~~~~   65 (108)
T d1jhll_           7 SPSYLVASPGETITINCRASKSISKSLAWYQEK----PGKTNN-----------LLIYSGSTLQSG------IPSRFSGS   65 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEEC----TTSCCE-----------EEEETTTEECTT------CCTTEEEE
T ss_pred             cCCeEEecCCCCEEEEEEccCCcCCceEEEEcc----ccCCCe-----------EEEEeeccccCC------cccccccc
Confidence            344566889999999999876656679999841    111111           111111111111      11123345


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .++....|+|.+++.+|+|.|.|.+.+.
T Consensus        66 ~~~~~~~L~i~~l~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          66 GSGTDFTLTISSLEPEDFAMYICQQHNE   93 (108)
T ss_dssp             ESSSEEEEEECSCCTTCCSEEEEEECSS
T ss_pred             CCCCEEEeEeeeeEeccceEEEEeeCCC
Confidence            5667788999999999999999976553

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.9e-06  Score=63.28  Aligned_cols=75  Identities=11%  Similarity=0.138  Sum_probs=53.0

Q ss_pred             CceEEccCCcEEEEEEEEeec--CCeEEEEECCE--E---c---------cCCCCceEEEcCCCCeEEEEECcCCCCCCe
Q psy16852        113 KPVIAEAQSPATLKATVTGRP--TPSICWYRGKE--E---I---------LPDNGHTMEFNPTTGECVLSISEATPQDEA  176 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~--~---~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  176 (579)
                      ..+...+|++++|.|......  ...+.||+...  .   +         ....+..+..+...+...|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            346778999999999875332  24678998321  1   1         112334455566778899999999999999


Q ss_pred             EEEEEEEcCCc
Q psy16852        177 VYSVKAVNTFG  187 (579)
Q Consensus       177 ~Y~C~~~~~~~  187 (579)
                      .|.|.+.....
T Consensus        84 ~Y~C~v~~~~~   94 (108)
T d1hkfa_          84 HYWCRIYRPSD   94 (108)
T ss_dssp             EEEEEEECTTT
T ss_pred             EEEEEEecCCC
Confidence            99999875543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.4e-07  Score=65.44  Aligned_cols=75  Identities=19%  Similarity=0.284  Sum_probs=50.2

Q ss_pred             ecCCCeEEEEEEEee-CC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        420 EAQSPATLKATVTGR-PT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      ..++.++|.|.+.|+ |. ..|.|+++|..+....              .......+...|.|...              
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~--------------~~~~~~~~~~~gtys~~--------------   68 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR--------------HSTTQPRKTKGSGFFVF--------------   68 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGG--------------EEECCCEECSSSCEEEE--------------
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCce--------------eEeeeeEecCCCCEEEE--------------
Confidence            356789999999985 43 3999999998874321              11122223344555433              


Q ss_pred             eEEEEeecccccceeEEEEEEeCCe
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      +.|.|..-+......|+|.+.+...
T Consensus        69 S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          69 SRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             EEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             EEEEECHHHcCCCCEEEEEEEECCC
Confidence            3488877777777889999988654

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=9.3e-07  Score=64.58  Aligned_cols=84  Identities=14%  Similarity=0.247  Sum_probs=53.2

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      |..+.+.+|++++|.|.........+.|++..    ++....           +.+........|      ...++....
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~----pg~~p~-----------~li~~~~~~~~~------~~~~fs~~~   66 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQK----QGKSPQ-----------FLVYNAKTLGEG------VPSRFSGSG   66 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEEC----TTSCCE-----------EEEETTTEECTT------CCTTEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeecc----ccCCCe-----------EEEEeeccccCC------cCCCEEEec
Confidence            45566889999999999875555679999931    111111           111111111111      112334455


Q ss_pred             eCCeeEEEEeecccccceeEEEEEE
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      ++....|.|.+++.+|+|.|.|.+.
T Consensus        67 ~~~~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          67 SGTQFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             cCCEEEEEEccccccCCeeEEEeee
Confidence            6778889999999999999999875

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=8.9e-07  Score=64.54  Aligned_cols=87  Identities=15%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .|....+.+|++++|.|.........+.|++..    +.....           +.+........|      ..+++...
T Consensus         7 ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~----pg~~~~-----------~l~~~~~~~~~~------~~~rf~~~   65 (107)
T d1d5il1           7 SPSSMYASLGERVTITCKASQDINSYLSWFQQK----PGKSPK-----------TLIYRANRLVDG------VPSRFSGS   65 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEEC----TTSCCE-----------EEEETTTEECTT------SCTTEEEE
T ss_pred             eCCEEEECCCCCEEEEEEcCCCCCCccceeEec----cccCeE-----------EEEEeccccccC------cCCceeec
Confidence            345566889999999999876656678999841    111111           111111111111      11234455


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .++....|+|.+++.+|+|.|.|.+.+.
T Consensus        66 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          66 GSGQDYSLTISSLEYEDMGIYYCLQYDE   93 (107)
T ss_dssp             EETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ccCCEEEccccccCCcCCEEEEeeeccC
Confidence            5677788999999999999999976543

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.1e-07  Score=67.52  Aligned_cols=94  Identities=15%  Similarity=0.070  Sum_probs=54.2

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeC-CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRP-TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      ..|...++.+|++++|.|.+.+.. ...+.|++....-  .....           +.|.....  ...|.-.....+..
T Consensus         5 ~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~--~~~~~-----------~~i~~~~~--~~~~~~~~~~~rfs   69 (114)
T d1akjd_           5 VSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGA--AASPT-----------FLLYLSQN--KPKAAEGLDTQRFS   69 (114)
T ss_dssp             EECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSST--TCCCE-----------EEEEESSS--CCEECTTCCTTTEE
T ss_pred             ECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCC--CcEEE-----------EEEecCCC--eeEcCCCCCCcEEE
Confidence            345566789999999999987543 4468999842100  00001           11111000  00000001112233


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ...+.....|+|.+++.+|+|.|.|.+...
T Consensus        70 ~~~~~~~~~L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          70 GKRLGDTFVLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EECCCCChhcEEccCCCCCCEEEeEeEcCC
Confidence            455566778999999999999999998743

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.6e-07  Score=68.70  Aligned_cols=71  Identities=17%  Similarity=0.281  Sum_probs=49.0

Q ss_pred             CceeeeCCCCEEEEEEEEee--CCCeeEEEEC--CE---Eec------------CCCCEEEEEe--CCEEEEEEcCCCCC
Q psy16852         14 QPVVSHQEQPALFTCKVEGH--PLPTMTWQKD--GT---ELH------------ATEHYLITTV--ESVSTLEIINPTKE   72 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~--g~---~~~------------~~~~~~~~~~--~~~~~L~i~~~~~~   72 (579)
                      ..+.+++|++|+|.|.+.+.  ....+.|||.  +.   .+.            ...++.+...  .+..+|+|.+++.+
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~   86 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVE   86 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcc
Confidence            34788899999999988543  3346889982  21   110            0124444433  34678999999999


Q ss_pred             CCEEEEEEEEcC
Q psy16852         73 DIGVYTCKATNI   84 (579)
Q Consensus        73 d~G~Y~C~~~~~   84 (579)
                      |+|.|.|.+...
T Consensus        87 Dsg~Y~Cav~~~   98 (113)
T d1smoa_          87 DSGLYQCVIYQP   98 (113)
T ss_dssp             GCEEEEEEECCT
T ss_pred             cCceEEEEEECC
Confidence            999999988543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.36  E-value=1.3e-06  Score=64.10  Aligned_cols=76  Identities=21%  Similarity=0.318  Sum_probs=55.7

Q ss_pred             cCCCceEEccCCcEEEEEEEEee--cCCeEEEEEC------CEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEE
Q psy16852        110 KPLKPVIAEAQSPATLKATVTGR--PTPSICWYRG------KEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  181 (579)
Q Consensus       110 ~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  181 (579)
                      ..+..+.+.+|+.++|.|.+.+.  ....+.||+.      ...+....+.....+.......|.|.+++.+|+|.|.|.
T Consensus         4 Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   83 (112)
T d1sq2n_           4 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCG   83 (112)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             ecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEE
Confidence            34566778899999999988542  3468999983      122333445555555556678999999999999999998


Q ss_pred             EEcC
Q psy16852        182 AVNT  185 (579)
Q Consensus       182 ~~~~  185 (579)
                      +...
T Consensus        84 ~~~~   87 (112)
T d1sq2n_          84 LGVA   87 (112)
T ss_dssp             ECBT
T ss_pred             EecC
Confidence            7644

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.35  E-value=1.1e-06  Score=62.48  Aligned_cols=79  Identities=18%  Similarity=0.333  Sum_probs=48.4

Q ss_pred             CCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeEEE
Q psy16852        422 QSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSVLL  501 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~l~  501 (579)
                      |++++|.|.........+.|++...    +....+         .+.+......+.|+|...       ...+.....|+
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~----g~~p~~---------l~~~~~~~~~~~~rf~~~-------~~~~~~~~sL~   60 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYS----GKSPEL---------IMSIYSNGDKEDGRFTAQ-------LNKASQYVSLL   60 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECT----TSCCEE---------EEEECSSEEEEETTEEEE-------EETTTTEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEEECC----Cccccc---------ceeeeeeccCCCCcEEEE-------ecCCCCEEeEE
Confidence            7899999998877677899998321    111111         011111111222333222       22345567899


Q ss_pred             EeecccccceeEEEEEEeC
Q psy16852        502 ISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       502 i~~~~~~d~G~Y~C~a~n~  520 (579)
                      |.+++.+|+|.|.|.+...
T Consensus        61 I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          61 IRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             ECSCCGGGCEEEEEEEESS
T ss_pred             eeccccCcCccceeeEecC
Confidence            9999999999999988754

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=4.1e-07  Score=68.07  Aligned_cols=72  Identities=19%  Similarity=0.205  Sum_probs=49.2

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCC---eeEEEECC--E--E-e----------cC--CCCEEEEEeCCEEEEEEcCCCC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLP---TMTWQKDG--T--E-L----------HA--TEHYLITTVESVSTLEIINPTK   71 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~~g--~--~-~----------~~--~~~~~~~~~~~~~~L~i~~~~~   71 (579)
                      +|..+.+.+|+.++|.|........   .+.|||..  +  . +          ..  ..............|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            4777889999999999998543332   48899832  1  1 1          00  0011122334568899999999


Q ss_pred             CCCEEEEEEEEc
Q psy16852         72 EDIGVYTCKATN   83 (579)
Q Consensus        72 ~d~G~Y~C~~~~   83 (579)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.1e-07  Score=68.60  Aligned_cols=85  Identities=11%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             eeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852        417 VIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN  496 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~  496 (579)
                      +...+|++++|.|.........+.|++.....      .+..  ...   +........ .++..-.      ....+..
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~------~~~~--~~~---~~~~~~~~~-~~r~~~~------~~~~~~~   65 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIK------ILGN--QGS---FLTKGPSKL-NDRADSR------RSLWDQG   65 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCE------EEEE--ETT---EEEECSSTT-GGGEECC------GGGGGGT
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCce------eeee--cce---eeeecCcee-ccceEEE------eccCCCC
Confidence            45778999999999876666689999853211      0000  000   000000000 0111000      0011122


Q ss_pred             eeEEEEeecccccceeEEEEEEe
Q psy16852        497 RSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ..+|+|.+++.+|+|.|.|.+.+
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~   88 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVED   88 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETT
T ss_pred             EEEEEECCCChHHCEEEEEEEec
Confidence            35699999999999999999965

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.34  E-value=7.7e-07  Score=66.29  Aligned_cols=76  Identities=20%  Similarity=0.300  Sum_probs=52.4

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeC--CCeeEEEEC--CE---Ee-------------cCCCCEEEEEe--CCEEEEE
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKD--GT---EL-------------HATEHYLITTV--ESVSTLE   65 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~--g~---~~-------------~~~~~~~~~~~--~~~~~L~   65 (579)
                      .+..+|..+.+.+|++++|.|.+.+..  ...+.|||.  |+   .|             ....++.....  .....|+
T Consensus         3 kl~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~   82 (120)
T d1ypzf1           3 KLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILT   82 (120)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEE
T ss_pred             CeEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccc
Confidence            355667788899999999999986543  235899982  11   11             01123333332  3467899


Q ss_pred             EcCCCCCCCEEEEEEEEc
Q psy16852         66 IINPTKEDIGVYTCKATN   83 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~   83 (579)
                      |.+++.+|+|.|.|....
T Consensus        83 I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          83 IYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             ECSCCGGGCSEEEEEECC
T ss_pred             ccccccccceeEEEEEcC
Confidence            999999999999997753

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=1.2e-06  Score=63.71  Aligned_cols=88  Identities=14%  Similarity=0.250  Sum_probs=54.0

Q ss_pred             ecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        411 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       411 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      +..+....+.+|++++|.|.....-...+.|++..    ++.....          |........+       ....++.
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~----~g~~~~~----------l~~~~~~~~~-------~~~~rfs   63 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQK----PGQSPKT----------LIYSASYRYS-------GVPDRFT   63 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEEC----TTSCCEE----------EEETTTEECT-------TSCTTEE
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCCCceEEEecc----CCcccEE----------EEEecccccc-------ccCCCee
Confidence            34455567899999999999865555579999841    1111111          1110000000       0112334


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ...+.....|+|.+++.+|++.|.|.+..
T Consensus        64 ~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          64 GSGSGTDFTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             EEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             ecCCCCeeeeeechhheecceeEEEeECC
Confidence            45566778899999999999999997654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.33  E-value=5.5e-07  Score=63.80  Aligned_cols=77  Identities=14%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEcC
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITT-VESVSTLEIINPTKEDIGVYTCKATNI   84 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (579)
                      +|.|...|..+ |..|++|+|.|... .....+.+||+|............. ......+.|.+++.+|+|.|+|.....
T Consensus         2 KPsLsa~P~~~-V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHPGPL-VKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeCCCc-cCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            68888888655 89999999999975 3344799999875321110000011 112367999999999999999987643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=5.2e-07  Score=68.04  Aligned_cols=75  Identities=16%  Similarity=0.111  Sum_probs=50.1

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeC------CCeeEEEECCE----Ee---------c--CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHP------LPTMTWQKDGT----EL---------H--ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~------~~~v~W~~~g~----~~---------~--~~~~~~~~~~--~~~~~L~i~   67 (579)
                      ..|..+.+.+|+.|+|.|.+....      ...+.|++.+.    .+         .  ...++.+...  .+..+|+|.
T Consensus         5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~   84 (118)
T d1qfoa_           5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLK   84 (118)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEEC
Confidence            358889999999999999986321      12466777321    11         1  1223333221  246789999


Q ss_pred             CCCCCCCEEEEEEEEcCC
Q psy16852         68 NPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~~   85 (579)
                      +++.+|+|.|.|++....
T Consensus        85 ~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          85 DLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             SCCGGGCEEEEEEEECC-
T ss_pred             CCChhHCEEEEEEEEeCC
Confidence            999999999999997543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.1e-06  Score=62.57  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCC--EEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEH--YLITTVESVSTLEIINPTKEDIGVYTCKA   81 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (579)
                      +-+|.|...|..+ |..|++|+|.|... .....+.++|+|........  ......+....+.|.+++.+|+|.|+|..
T Consensus         2 ~pkPsLsa~P~~~-v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           2 YIKPTLSAQPSPV-VNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             SCCCEEEEESCSE-EETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CCCCEEEeeCCCc-cCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence            4578899999776 99999999999874 23447889998875432211  01111234578999999999999999987


Q ss_pred             EcC
Q psy16852         82 TNI   84 (579)
Q Consensus        82 ~~~   84 (579)
                      ...
T Consensus        80 ~~~   82 (98)
T d1ugna2          80 YDS   82 (98)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            643

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.32  E-value=1.4e-06  Score=63.79  Aligned_cols=86  Identities=17%  Similarity=0.265  Sum_probs=54.7

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .|..+.+.+|+.++|.|...+.....+.|++..    .+....           +.+......+.|      ...++...
T Consensus         9 sP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~----~g~~p~-----------~l~~~~~~~~~~------~~~~fs~~   67 (109)
T d1bwwa_           9 SPSSLSASVGDRVTITCQASQDIIKYLNWYQQK----PGKAPK-----------LLIYEASNLQAG------VPSRFSGS   67 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEEC----TTSCCE-----------EEEETTTEECTT------CCTTEEEE
T ss_pred             eCCEEEECCCCCEEEEEEecCCCCCcceEeeec----cCCCCE-----------EEEEecccCCCC------CCCCEEee
Confidence            345567899999999999876655678999831    111111           111111111111      12334455


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .++....|+|.+++.+|+|.|.|.+..
T Consensus        68 ~~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          68 GSGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             EETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCCEeEEEEeeceeCcCceEEEeecC
Confidence            567778899999999999999998654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.32  E-value=1.2e-06  Score=63.58  Aligned_cols=84  Identities=20%  Similarity=0.325  Sum_probs=53.5

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      .+++.+|++++|.|.........+.|++..    ++....           +.+........+      .........+.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~----pg~~~~-----------~~~~~~~~~~~~------~~~~~~~~~~~   65 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQK----PGRAPV-----------MVIYKDTQRPSG------IPQRFSSSTSG   65 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEEC----TTSCCE-----------EEEBTTTBCCTT------SCTTEEEEEET
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEcc----CCCceE-----------EEeeeecccccc------cCCcEEECCCC
Confidence            456889999999998765555578999842    111111           111111111100      11233455677


Q ss_pred             CeeEEEEeecccccceeEEEEEEeC
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ....|.|.+++.+|+|.|.|.+.+.
T Consensus        66 ~~~~L~I~~l~~~Dsa~YyCA~~~~   90 (103)
T d8faba1          66 TTVTLTISGVQAEDEADYYCQAWDN   90 (103)
T ss_dssp             TEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CccCceEcCcchhHCceEEeeecCC
Confidence            7889999999999999999987654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.31  E-value=1.7e-06  Score=62.81  Aligned_cols=85  Identities=13%  Similarity=0.183  Sum_probs=52.1

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .|..+++.+|++++|.|..+ .....+.|++..    +.....           +.+........|      ....+...
T Consensus         6 sP~~l~~~~G~~vtl~C~~s-~~~~~~~WYrQ~----~g~~~~-----------~~~~~~~~~~~~------~~~~f~~~   63 (104)
T d1yqvl1           6 SPAIMSASPGEKVTMTCSAS-SSVNYMYWYQQK----SGTSPK-----------RWIYDTSKLASG------VPVRFSGS   63 (104)
T ss_dssp             ESSEEEECTTCCEEEEEEES-SCCSCCEEEEEC----TTSCCE-----------EEEETTTEECTT------CCTTEEEE
T ss_pred             cCCeEEECCCCCEEEEEEeC-CCCCccEEEEee----ccCceE-----------EEEecccccCCC------cCceEEEe
Confidence            34556789999999999875 334468999842    111111           111111111111      11233455


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .++....|.|.+++.+|+|.|.|.+..
T Consensus        64 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          64 GSGTSYSLTISSMETEDAATYYCQQWG   90 (104)
T ss_dssp             EETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             cCCCEEEEEecccCcccCCeEEEEecC
Confidence            567788899999999999999997643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=7.7e-07  Score=64.87  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=53.5

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .|..+++.+|+.++|.|.........+.|++..    ++....           +.+......+.+      ...++...
T Consensus         7 sP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~----~g~~~~-----------~l~~~~~~~~~~------~~~~f~~~   65 (107)
T d3cx5k1           7 TPVSLAASLGDRVTISCRASQDINNFLNWYQQK----PDGTIK-----------LLIYYTSRLHAG------VPSRFSGS   65 (107)
T ss_dssp             ESTTCCBCSSSCCEEEEEESSCCTTCEEEEEEC----TTSCEE-----------EEEETTTEECTT------CCTTCCCE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcC----CCCcce-----------EEEEeecccCCC------cCCCEEEE
Confidence            345566889999999999876666679999841    111111           111111111111      11233445


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEE
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      .++....|+|.+++.+|+|.|.|.+.
T Consensus        66 ~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          66 GSGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             EETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             ccCCEEEEEEeEeeecCCCcEEeeeC
Confidence            56777899999999999999999764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.30  E-value=2.5e-06  Score=62.88  Aligned_cols=86  Identities=16%  Similarity=0.179  Sum_probs=52.2

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee--e
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET--K  490 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~--~  490 (579)
                      .+..+.+.+|+.++|.|.........+.|++..    ++....           +.+......+.      ...++.  .
T Consensus         6 ~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~----~g~~~~-----------~l~~~~~~~~~------~~~~~~~~~   64 (111)
T d1bd2d1           6 NSPSLSVQEGRISILNCDYTNSMFDYFLWYKKY----PAEGPT-----------FLISISSIKDK------NADGRFTVF   64 (111)
T ss_dssp             CCSEEEEETTSCEEEEEEECCTTCCEEEEEEEC----TTSCCE-----------EEEEEETTCSE------EEETTEEEE
T ss_pred             cCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEEC----CCCcce-----------eeeeeeceecc------ccCCcceEE
Confidence            344556899999999999876666678999831    111111           11111111110      011112  2


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ....+....|.|.+++.+|+|.|.|.+..
T Consensus        65 ~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          65 LNKSAKHLSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             EETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             EEccCCEEEEEECCCcccccEEEEeeccC
Confidence            23445678899999999999999998764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.8e-06  Score=61.67  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=26.3

Q ss_pred             eecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCC
Q psy16852        419 AEAQSPATLKATVTGR-PTP-SICWYRGKEEILP  450 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~  450 (579)
                      +..|+.++|.|.+.|+ |.. .|+|++||..+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~   49 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK   49 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCC
Confidence            4578899999999996 444 8999999998853

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.29  E-value=2.2e-06  Score=63.67  Aligned_cols=105  Identities=16%  Similarity=0.225  Sum_probs=60.4

Q ss_pred             ecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        411 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       411 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      +.++..+++.+|++++|.|.........+.|++..    ++....           +.+..........   ........
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~----pg~~~~-----------~i~~~~~~~~~~~---~~~~~~~~   65 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQY----PRQGLQ-----------LLLKYYSGDPVVQ---GVNGFEAE   65 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEEC----TTSCCE-----------EEEEECSSCSEEE---CGGGCEEE
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEEC----CCCcee-----------eeeeeccceeccc---cCcceeEE
Confidence            34455677999999999999876656678899831    111111           1111111111000   01111223


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeCCeeEE--EEEEEEEe
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENVAGSVT--CTATLSLL  533 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~  533 (579)
                      ...++....|+|.+++.+|+|.|.|.+........  .-..|.|+
T Consensus        66 ~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~~~~FG~GT~L~V~  110 (115)
T d1i9ea_          66 FSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL  110 (115)
T ss_dssp             CBTTTTBCCEEESSCCGGGCEEEEEEEEETTEEEEECCCEEEEEE
T ss_pred             EeCcCCEEEEecccccccccceecccccCCCCCCEECCCEEEEEe
Confidence            34455667899999999999999998765422211  12567775

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=2.5e-06  Score=61.99  Aligned_cols=71  Identities=14%  Similarity=0.246  Sum_probs=50.6

Q ss_pred             CceeeeCCCCEEEEEEEEee--CCCeeEEEEC--CE----EecC-----------CCCEEEEEe--CCEEEEEEcCCCCC
Q psy16852         14 QPVVSHQEQPALFTCKVEGH--PLPTMTWQKD--GT----ELHA-----------TEHYLITTV--ESVSTLEIINPTKE   72 (579)
Q Consensus        14 ~~~~v~~G~~~~l~C~~~~~--~~~~v~W~~~--g~----~~~~-----------~~~~~~~~~--~~~~~L~i~~~~~~   72 (579)
                      ....++||++|+|.|.+.+.  ......|+|.  |+    .+..           ..++.+..+  .....|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            45778999999999998754  3346889983  32    1110           134445443  45688999999999


Q ss_pred             CCEEEEEEEEcC
Q psy16852         73 DIGVYTCKATNI   84 (579)
Q Consensus        73 d~G~Y~C~~~~~   84 (579)
                      |+|.|.|.....
T Consensus        83 Dsa~YyCa~~~~   94 (110)
T d1u9ka_          83 DSGLYRCVIYHP   94 (110)
T ss_dssp             GCEEEEEEEECT
T ss_pred             CCEEEEEEEeCC
Confidence            999999988644

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.28  E-value=3.1e-07  Score=65.65  Aligned_cols=76  Identities=22%  Similarity=0.356  Sum_probs=50.1

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEee-C-CCeeEEEECCEEecCCCCEE-EEEeCC-----EEEEEEcCCCCCCCEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGH-P-LPTMTWQKDGTELHATEHYL-ITTVES-----VSTLEIINPTKEDIGVY   77 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~-~~~v~W~~~g~~~~~~~~~~-~~~~~~-----~~~L~i~~~~~~d~G~Y   77 (579)
                      ||.+..-|.. .+..|+.++|.|.+.|+ | ...++|++||..+..+.... ....++     .+.|.+.   .++.+.|
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~y   78 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIY   78 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCCE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCEE
Confidence            6777765544 35679999999999986 3 35899999998875431110 011111     2345544   4567789


Q ss_pred             EEEEEcCC
Q psy16852         78 TCKATNIG   85 (579)
Q Consensus        78 ~C~~~~~~   85 (579)
                      +|++.+..
T Consensus        79 tC~V~H~s   86 (100)
T d1muja1          79 DCKVEHWG   86 (100)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99999864

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.28  E-value=6.3e-06  Score=59.09  Aligned_cols=73  Identities=23%  Similarity=0.377  Sum_probs=53.1

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE--------------ec--CCCCEEEEEe--CCEEEEEEcC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE--------------LH--ATEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~--------------~~--~~~~~~~~~~--~~~~~L~i~~   68 (579)
                      .++....+++|++++|+|++.|....  .+.|+|  .|+.              ..  ...++.+..+  .....|+|.+
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~   84 (116)
T d7fabh1           5 EQSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSS   84 (116)
T ss_dssp             EEECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             EeECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccc
Confidence            45677889999999999999986543  588988  2211              11  1245555543  3467899999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy16852         69 PTKEDIGVYTCKATN   83 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~   83 (579)
                      ++.+|++.|.|....
T Consensus        85 L~~eDtAvYyCAr~~   99 (116)
T d7fabh1          85 VTAADTAVYYCARNL   99 (116)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cccccceEEEeeeec
Confidence            999999999997643

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.28  E-value=2.9e-06  Score=60.88  Aligned_cols=73  Identities=19%  Similarity=0.392  Sum_probs=53.0

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|++|.|+|++.|....  .+.|+|  .|+.      |.           ...++.+..+  .....|+|.
T Consensus         5 ~esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~   84 (117)
T d1iqdb1           5 VQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELS   84 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeec
Confidence            45677889999999999999886433  588988  2221      11           1345555554  346789999


Q ss_pred             CCCCCCCEEEEEEEEc
Q psy16852         68 NPTKEDIGVYTCKATN   83 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~   83 (579)
                      +++.+|++.|.|....
T Consensus        85 ~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          85 SLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccCcCcceEEEEeEcC
Confidence            9999999999998643

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=6.3e-07  Score=66.37  Aligned_cols=69  Identities=16%  Similarity=0.193  Sum_probs=44.7

Q ss_pred             ceeeeCCCCEEEEEEEEeeCC---CeeEE--EECCEEe--------------cCCCCEEEEEeCCEEEEEEcCCCCCCCE
Q psy16852         15 PVVSHQEQPALFTCKVEGHPL---PTMTW--QKDGTEL--------------HATEHYLITTVESVSTLEIINPTKEDIG   75 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~~~---~~v~W--~~~g~~~--------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G   75 (579)
                      .+.+..|++++|.|.+...+.   ..+.|  .+++...              ......+.....+..+|+|.+++.+|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            467889999999999854322   22444  3432211              0111222334445678999999999999


Q ss_pred             EEEEEEEc
Q psy16852         76 VYTCKATN   83 (579)
Q Consensus        76 ~Y~C~~~~   83 (579)
                      .|.|.+..
T Consensus        83 ~Y~C~V~~   90 (110)
T d1ncna_          83 LYQCIIHH   90 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99999864

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.8e-07  Score=66.29  Aligned_cols=70  Identities=16%  Similarity=0.298  Sum_probs=48.7

Q ss_pred             ceeeeCCCCEEEEEEEEeeCC----CeeEEEECCEEecC------------CCCEEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy16852         15 PVVSHQEQPALFTCKVEGHPL----PTMTWQKDGTELHA------------TEHYLITTVESVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~g~~~~~------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   78 (579)
                      .+.+..|+.++|.|.......    ..+.|.+++..+..            ..+... ...+..+|+|.+++.+|+|.|.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~-~~~g~~sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeee-ccCCcEEEEECcCChHHCeEEE
Confidence            367889999999998753222    25788887765410            122222 2234568999999999999999


Q ss_pred             EEEEcCC
Q psy16852         79 CKATNIG   85 (579)
Q Consensus        79 C~~~~~~   85 (579)
                      |.+.+..
T Consensus        82 C~V~~~~   88 (105)
T d1dr9a1          82 CVVLKYE   88 (105)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9997543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.27  E-value=3.4e-06  Score=60.93  Aligned_cols=75  Identities=17%  Similarity=0.379  Sum_probs=54.6

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEE
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTL   64 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L   64 (579)
                      +++.++....+++|++++|+|+++|....  .+.|+|.  |+.      +.           ...++.+..+  .....|
T Consensus         3 qll~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL   82 (122)
T d1vgeh1           3 KLLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYM   82 (122)
T ss_dssp             CSEEECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             eeeEecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeee
Confidence            45556888889999999999999876543  5889882  211      11           1245555554  346779


Q ss_pred             EEcCCCCCCCEEEEEEEE
Q psy16852         65 EIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        65 ~i~~~~~~d~G~Y~C~~~   82 (579)
                      +|.+++.+|++.|+|...
T Consensus        83 ~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          83 GLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             cccccCCCcceEEEEeec
Confidence            999999999999999765

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=1.3e-06  Score=65.83  Aligned_cols=77  Identities=14%  Similarity=0.140  Sum_probs=49.9

Q ss_pred             CCCceEEccCCcEEEEEEEEee----cCCeEEEEECC--E----Ec---------c---CC--CCceEEEcCCCCeEEEE
Q psy16852        111 PLKPVIAEAQSPATLKATVTGR----PTPSICWYRGK--E----EI---------L---PD--NGHTMEFNPTTGECVLS  166 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~~~--~----~~---------~---~~--~~~~~~~~~~~~~~~l~  166 (579)
                      .+..+.+..|++++|.|.+...    ....+.|++..  .    .+         .   ..  .+..+..+...+..+|.
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence            4566788899999999997532    23589998731  1    01         0   01  11222223344557899


Q ss_pred             ECcCCCCCCeEEEEEEEcCCc
Q psy16852        167 ISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      |.+++.+|+|.|+|.+.+..+
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC---
T ss_pred             ECCCChHHCEEEEEEEEECCC
Confidence            999999999999999987543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.26  E-value=2.6e-07  Score=68.44  Aligned_cols=74  Identities=11%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECC--EE---e------------cCCCCEEE-EEeCCEEEEEEcCCCC
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDG--TE---L------------HATEHYLI-TTVESVSTLEIINPTK   71 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g--~~---~------------~~~~~~~~-~~~~~~~~L~i~~~~~   71 (579)
                      ...|..+.+.+|++++|.|.... ....+.|||..  ..   +            .....+.. ........|.|.+++.
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            45688899999999999999743 23479999821  10   0            00011111 1122346799999999


Q ss_pred             CCCEEEEEEEEcC
Q psy16852         72 EDIGVYTCKATNI   84 (579)
Q Consensus        72 ~d~G~Y~C~~~~~   84 (579)
                      +|+|.|.|.+...
T Consensus        81 ~Dsa~YyCA~~~~   93 (112)
T d2cdeb1          81 SHTSQYLCASSEN   93 (112)
T ss_dssp             TTCSEEEEEEECS
T ss_pred             cccccEEEEEecC
Confidence            9999999988654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.26  E-value=1.1e-06  Score=64.91  Aligned_cols=88  Identities=16%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +....+.+|++++|.|.........+.|++..    ++....           +.+........+    ...........
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~----pg~~~~-----------~l~~~~~~~~~~----~~~~~~~~~~~   66 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQF----PGEGPA-----------LLISILSVSDKK----EDGRFTIFFNK   66 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEEC----TTSCCE-----------EEEEEETTCSEE----EETTEEEEEET
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeec----ccccee-----------eeeeeccccccc----cccceeEEECC
Confidence            44566889999999999875544579999842    111111           111111111111    01111222334


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .+....|+|.+++.+|+|.|.|.+...
T Consensus        67 ~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (110)
T d1u3ha1          67 REKKLSLHIADSQPGDSATYFCAASAN   93 (110)
T ss_dssp             GGGEEEEEESSCCTTSCSEEEECCEES
T ss_pred             CCCeeEeEeccCCCCCceeEeeeecCC
Confidence            456678999999999999999988643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.26  E-value=2.7e-06  Score=63.35  Aligned_cols=94  Identities=15%  Similarity=0.223  Sum_probs=54.2

Q ss_pred             ecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        411 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       411 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      ...+....+.+|++++|.|...+.....+.|++..    ++..-.+.         +.+.....   ..|.-......+.
T Consensus         5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~----~g~~~~~l---------~~~~~~~~---~~~~~~~~~~~f~   68 (118)
T d2ij0c1           5 SQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQF----PKQSLMLM---------ATSHQGFN---AIYEQGVVKDKFL   68 (118)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSSCCSEEEEEEEC----TTSCEEEE---------EEEETTSC---CEECTTCCTTTEE
T ss_pred             EEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEc----ccccceee---------eecccccc---ceeccccccccce
Confidence            33445567899999999999877666789999841    11111110         11110000   0000001111222


Q ss_pred             ee-eeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        491 IM-TDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       491 ~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      +. .+.....|+|.+++.+|+|.|.|.+.-.
T Consensus        69 ~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          69 INHASPTLSTLTVTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             EEECSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             eeccccccccccccccccccCceEEEEEecC
Confidence            22 3445678999999999999999998644

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.25  E-value=2.3e-06  Score=62.59  Aligned_cols=87  Identities=16%  Similarity=0.250  Sum_probs=53.2

Q ss_pred             cCCCceeeecCCCeEEEEEEEee-CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      ..|....+.+|+.++|.|..... ....+.|++..    ++....           +.+......+.+      ..+...
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~----~g~~~~-----------~l~~~~~~~~~~------~~~~~s   64 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQR----PGQAPR-----------LLIYGASSRPSG------VADRFS   64 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEEC----TTSCCE-----------EEEBTTTBCCTT------SCTTEE
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEecc----ccCCCE-----------EEEeeecccccC------Ccccee
Confidence            44556678999999999987643 23468899842    111111           111111111111      112233


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ...++....|+|.+++.+|+|.|.|.+.+
T Consensus        65 ~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          65 GSGSGTDFTLTISRLEPEDFAVYYCQQYG   93 (108)
T ss_dssp             EEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             eecCCCEEEEEehHheecccEEEeeecCC
Confidence            44566778899999999999999998753

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=4.3e-06  Score=59.79  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=26.2

Q ss_pred             eecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCC
Q psy16852        419 AEAQSPATLKATVTGR-PTP-SICWYRGKEEILPD  451 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~  451 (579)
                      ...|+.++|.|.+.|+ |.. .|+|+++|..+...
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~   49 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKV   49 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTC
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCc
Confidence            3468889999999996 433 89999999988543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=9.1e-07  Score=62.83  Aligned_cols=77  Identities=14%  Similarity=0.166  Sum_probs=54.2

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEECCEEecCCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEc
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKDGTELHATEHYLITTVESVSTLEIINPTKEDIGVYTCKATN   83 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (579)
                      +-+|.|...|..+ |..|++|+|.|... .+...+.+||+|......... .........+.|.+++.+|+|.|+|....
T Consensus         2 LPkP~Lsa~Ps~~-V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           2 LPKPTLWAEPGSV-ITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCCCEEEEESCSE-EETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeECCCc-cCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc-cCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            4578888888866 88999999999963 344578999988643210000 00011235799999999999999998753

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=3.5e-06  Score=61.39  Aligned_cols=84  Identities=15%  Similarity=0.142  Sum_probs=51.7

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC---eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP---SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~---~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .+++.+|++++|.|...+....   -+.|++..    ++...+           +.+........|      ..+++...
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~----pg~~p~-----------~l~y~~~~~~~~------~~~rf~~s   67 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEK----PDHLFT-----------GLIGGTNNRAPG------VPARFSGS   67 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEE----TTTEEE-----------EEEETTTEECTT------SCTTEEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEee----ccccee-----------eeeeeeceeccc------cceeeeec
Confidence            3568899999999999744322   38899831    111111           111111100000      11234455


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .++....|.|.+++.+|+|.|.|.+...
T Consensus        68 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          68 LIGNKAALTITGAQTEDEAIYFCALWYS   95 (110)
T ss_dssp             EETTEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             ccccceeeecCCCCccccEeEEEEcccC
Confidence            6677889999999999999999987653

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.24  E-value=1.5e-08  Score=72.52  Aligned_cols=71  Identities=18%  Similarity=0.390  Sum_probs=47.8

Q ss_pred             ceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEe------------cCCCCEEEEEe--CCEEEEEEcCCCCCCCEEEE
Q psy16852         15 PVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTEL------------HATEHYLITTV--ESVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~------------~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~   78 (579)
                      ++.|+||++|+|+|..... ...+.|||.  |+..            ....++.....  .....|.|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            4679999999999987532 337999982  2211            11122322221  23467999999999999999


Q ss_pred             EEEEcCCe
Q psy16852         79 CKATNIGG   86 (579)
Q Consensus        79 C~~~~~~g   86 (579)
                      |.+....|
T Consensus        81 CA~~~~~g   88 (96)
T d1ymmd1          81 CATDTTSG   88 (96)
T ss_dssp             EEEEETTS
T ss_pred             EeEecCCC
Confidence            98865444

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.24  E-value=5.7e-06  Score=59.40  Aligned_cols=72  Identities=25%  Similarity=0.439  Sum_probs=51.8

Q ss_pred             ccccCceeeeCCCCEEEEEEEEeeCC--CeeEEEE--CCEE---------------ecC--CCCEEEEEe--CCEEEEEE
Q psy16852         10 IEKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQK--DGTE---------------LHA--TEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        10 ~~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~--~g~~---------------~~~--~~~~~~~~~--~~~~~L~i   66 (579)
                      +.++....+++|++++|+|+++|...  -.+.|+|  .|+.               ...  ..++.+..+  .....|+|
T Consensus         4 L~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i   83 (117)
T d1mfah1           4 VQQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMEL   83 (117)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeee
Confidence            34677888999999999999987643  2578887  2221               111  235555544  34678999


Q ss_pred             cCCCCCCCEEEEEEE
Q psy16852         67 INPTKEDIGVYTCKA   81 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~   81 (579)
                      .+++.+|++.|+|..
T Consensus        84 ~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          84 SSLTSEDSAVYYCTR   98 (117)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEec
Confidence            999999999999964

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.23  E-value=5.2e-06  Score=60.21  Aligned_cols=72  Identities=21%  Similarity=0.461  Sum_probs=52.1

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--CeeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|++++|+|.+.|...  -.+.|||  .|+.      +.           ...++.+..+  .+...|+|.
T Consensus         5 ~qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~   84 (120)
T d1pg7x1           5 QQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELV   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccc
Confidence            4566778999999999999987643  2588988  2221      11           1245555543  346789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        85 ~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          85 RLTSNDSAVYYCARE   99 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEeeec
Confidence            999999999999864

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.23  E-value=6.2e-06  Score=59.22  Aligned_cols=72  Identities=24%  Similarity=0.409  Sum_probs=52.8

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|++++|+|++.|....  .+.|+|.  |+.      +.           ...++.+..+  .....|+|.
T Consensus         4 ~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~   83 (117)
T d1um5h1           4 QQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELS   83 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccc
Confidence            46777889999999999999886543  5889882  211      11           1245555544  346789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        84 sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          84 SLTSEDSAVYYCARS   98 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999754

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.22  E-value=3.6e-06  Score=59.99  Aligned_cols=72  Identities=18%  Similarity=0.351  Sum_probs=52.6

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|+++.|+|++.|....  .+.|+|  .|+.      |.           ...++.+..+  .....|+|.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~   84 (116)
T d1mjuh1           5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (116)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence            46778889999999999999986543  588988  2211      11           1235555544  346789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|.+.|+|...
T Consensus        85 sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          85 SLTSDDSAVYYCANK   99 (116)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCceEEEEccc
Confidence            999999999999643

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=1.7e-06  Score=64.22  Aligned_cols=78  Identities=19%  Similarity=0.313  Sum_probs=54.0

Q ss_pred             ecCCCceEEccCCcEEEEEEEEee-cCCeEEEEEC--CEE---cc----------CCCCceEEEcCCCCeEEEEECcCCC
Q psy16852        109 TKPLKPVIAEAQSPATLKATVTGR-PTPSICWYRG--KEE---IL----------PDNGHTMEFNPTTGECVLSISEATP  172 (579)
Q Consensus       109 ~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~--~~~---~~----------~~~~~~~~~~~~~~~~~l~i~~~~~  172 (579)
                      ...+..+.+.+|++++|.|..... ....+.||+.  +..   +.          ...+.............|.|.+++.
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            344566788999999999987532 3456899983  211   10          1122334445556678999999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy16852        173 QDEAVYSVKAVNTF  186 (579)
Q Consensus       173 ~d~G~Y~C~~~~~~  186 (579)
                      +|+|.|.|.+....
T Consensus        84 ~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          84 VDSAVYFCALSGFY   97 (114)
T ss_dssp             GGCEEEEEEEECSB
T ss_pred             ccCCCceEeCCCCC
Confidence            99999999876543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.22  E-value=1e-05  Score=57.97  Aligned_cols=71  Identities=21%  Similarity=0.387  Sum_probs=51.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec---------C--CCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH---------A--TEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~---------~--~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++.+..+++|++|.|+|++.|....  .+.|+|  .|+.      +.         .  ..++.+..+  .....|+|.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~   84 (118)
T d2jelh1           5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence            46777889999999999999886543  588988  2221      11         1  135555543  446789999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|+|..
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999954

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.22  E-value=3.3e-06  Score=62.02  Aligned_cols=85  Identities=13%  Similarity=0.229  Sum_probs=52.1

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeC-----CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRP-----TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p-----~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      ..+..+++.+|++++|.|..++..     ...+.|++..    ++....           +.|........|      ..
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~----~g~~~~-----------~liy~~~~~~~~------~~   64 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQR----PGQSPQ-----------LLIYRMSNLASG------VP   64 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEEC----TTSCCE-----------EEEETTTEECTT------SC
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECC----CCCcEE-----------EEEEeCCcccCC------CC
Confidence            344556688999999999987532     3368999842    111111           112221111111      11


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEE
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                      .+.....++....|+|.+++.+|++.|.|..
T Consensus        65 ~r~~~~~s~~~~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          65 DRFSGSGSGTAFTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             TTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CcEEeecCCCEEEEEECCccccCCceEEEEe
Confidence            2334455677788999999999999999954

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.22  E-value=2.5e-06  Score=62.09  Aligned_cols=84  Identities=19%  Similarity=0.324  Sum_probs=53.9

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      .+++.+|++++|.|.........+.|++..    ++...           .+.+......+.|.      ........++
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~----~g~~~-----------~~l~~~~~~~~~~~------~~~~~~~~~~   67 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQK----PGQAP-----------VLVVYDDSDRPSGI------PERFSGSNSG   67 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEEC----TTSCC-----------EEEEBTTTBCCTTS------CTTEEEEEET
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeecc----cccee-----------EEEEEccccCCCce------eeeEeeecCC
Confidence            466889999999998764444579999842    11111           11122222222111      2233455667


Q ss_pred             CeeEEEEeecccccceeEEEEEEeC
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ....|.|.+++.+|+|.|.|.+...
T Consensus        68 ~~~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          68 NMATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CccceEEeeeccCCCEEEEEEecCC
Confidence            7889999999999999999998754

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.22  E-value=4.4e-06  Score=58.97  Aligned_cols=72  Identities=21%  Similarity=0.454  Sum_probs=52.2

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCE--E----e-----------c--CCCCEEEEEe--CCEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGT--E----L-----------H--ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~--~----~-----------~--~~~~~~~~~~--~~~~~L~   65 (579)
                      .+.....|++|++++|+|+++|....  .+.|+|  .|+  +    +           .  ...++.+..+  .....|+
T Consensus         5 ~eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~   84 (109)
T d2ck0h1           5 QESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQ   84 (109)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             EeECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEec
Confidence            35667889999999999999886543  588987  221  1    1           1  1235655554  4467899


Q ss_pred             EcCCCCCCCEEEEEEEE
Q psy16852         66 IINPTKEDIGVYTCKAT   82 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~   82 (579)
                      |.+++.+|++.|.|.-.
T Consensus        85 i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          85 MNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccCCCHhHCEEEEEEEc
Confidence            99999999999999743

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.22  E-value=4.7e-06  Score=59.93  Aligned_cols=71  Identities=21%  Similarity=0.366  Sum_probs=50.4

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--CeeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|++++|.|+++|...  -.+.|||  .|+.      +.           ...++.+..+  .....|+|.
T Consensus         5 ~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~   84 (115)
T d1f3dh1           5 QQSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLN   84 (115)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeee
Confidence            3456667999999999999987643  3588988  2211      11           1235555543  345789999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|.|..
T Consensus        85 ~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          85 SLTFEDSAVYYCAN   98 (115)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ecCcCCcEEEEEec
Confidence            99999999999954

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.21  E-value=7.7e-06  Score=59.94  Aligned_cols=84  Identities=19%  Similarity=0.247  Sum_probs=52.8

Q ss_pred             ceeeecCCCeEEEEEEEeeC--CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRP--TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ..++.+|++++|.|.+.+..  ...+.|++..    +.....+           .+........+      ..++.....
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~----~g~~~~~-----------l~~~~~~~~~~------~~~~~~~~~   67 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQV----PGKAPKL-----------LIYYNDLLPSG------VSDRFSASK   67 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECC----TTSCCEE-----------EEBTTTBCCTT------CCTTEEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeee----cccceEE-----------EEEEeeeeccC------CCCcceecC
Confidence            46788999999999987543  4578999842    1111111           11110001100      112334455


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      +.....|.|.+++.+|++.|.|.+...
T Consensus        68 ~~~~~~L~I~~v~~~DsA~YyCA~~~~   94 (114)
T d2rhea_          68 SGTSASLAISGLESEDEADYYCAAWND   94 (114)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeeeeEecccCcccCceEEEeecCC
Confidence            677888999999999999999988643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.21  E-value=3.5e-06  Score=61.71  Aligned_cols=86  Identities=14%  Similarity=0.161  Sum_probs=51.6

Q ss_pred             CCceeeecCCCeEEEEEEEee-CC---CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee
Q psy16852        414 LKPVIAEAQSPATLKATVTGR-PT---PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET  489 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~-p~---~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~  489 (579)
                      |..+++.+|++++|.|..++. ..   ..+.|++..    ++....           +.|........|      ...++
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~----pg~~~~-----------~li~~~~~~~~g------~~~rf   66 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQK----PGQPPR-----------RLIYLVSNLESG------VPARF   66 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEEC----TTSCCE-----------EEEETTTEECTT------CCTTE
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEEC----CCCccE-----------EEEEccCccCCC------cCCcE
Confidence            455678999999999987532 22   248999841    111111           111111111111      11233


Q ss_pred             eeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        490 KIMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ....++....|+|.+++.+|+|.|.|.+.+.
T Consensus        67 s~~~~~~~~~L~I~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          67 SGSGSGTDFTLNIHPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             EEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEecCCCchhcccccccccCCceEEEEECCC
Confidence            4455667788999999999999999976543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.21  E-value=3.9e-06  Score=60.00  Aligned_cols=72  Identities=17%  Similarity=0.324  Sum_probs=51.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--CeeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|+++.|+|++.|...  -.+.|+|.  |+.      |.           ...++.+..+  .+...|+|.
T Consensus         5 ~esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~   84 (117)
T d1jpth1           5 VESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMN   84 (117)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEeccc
Confidence            4566788999999999999998653  35888872  211      11           1245555544  456789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|+|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          85 SLRAEDTAVYYCARD   99 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCceEEEEeec
Confidence            999999999999653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.20  E-value=2.2e-06  Score=62.89  Aligned_cols=86  Identities=16%  Similarity=0.234  Sum_probs=51.4

Q ss_pred             CCceeeecCCCeEEEEEEEee----CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee
Q psy16852        414 LKPVIAEAQSPATLKATVTGR----PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET  489 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~----p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~  489 (579)
                      |..+.+.+|+.++|.|.....    ....+.|++..    ++....           +.|......+.|      ...+.
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~----~g~~p~-----------~liy~~~~~~~~------~~~~~   66 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQK----PGQPPK-----------LLIYRASNLESG------IPVRF   66 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEEC----TTSCCE-----------EEEETTTEECTT------SCTTE
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEcc----CCCCCE-----------EEEEeeccccCC------CCCcE
Confidence            344568899999999987532    12249999841    111111           112111111111      11233


Q ss_pred             eeeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        490 KIMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ....++....|.|.+++.+|+|.|.|.+.+.
T Consensus        67 ~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          67 SGTGSRTDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             EEECSSSEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEecCCCEEEEEEcccccccCccEEEeecCC
Confidence            4455667788999999999999999987543

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.20  E-value=2.4e-06  Score=63.43  Aligned_cols=92  Identities=9%  Similarity=0.110  Sum_probs=53.3

Q ss_pred             ecCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee
Q psy16852        411 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK  490 (579)
Q Consensus       411 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~  490 (579)
                      +..+..+++.+|+.++|.|.........+.|++...  .......+.........         ...+.+.       ..
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~p--g~~~~~l~~~~~~~~~~---------~~~~~~~-------~~   65 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYP--NQGLQLLLKYTSAATLV---------KGINGFE-------AE   65 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECT--TSCCEEEEEECSSCSEE---------ECGGGCE-------EE
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccC--CCcceeeeEEeeccccc---------ccCCCCE-------EE
Confidence            344556779999999999998766566899998310  00111111110000000         0001111       11


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ...+.....|+|.+++.+|+|.|.|.+...
T Consensus        66 ~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          66 FKKSETSFHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CBGGGTBCCEEESSCCGGGCEEEEEEEESS
T ss_pred             ECCCCCEEEEeeccccccCCccceeeecCC
Confidence            222344557999999999999999999764

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.20  E-value=3.8e-06  Score=60.65  Aligned_cols=71  Identities=18%  Similarity=0.358  Sum_probs=51.6

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec----------CCCCEEEEEe--CCEEEEEEcC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH----------ATEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~----------~~~~~~~~~~--~~~~~L~i~~   68 (579)
                      .+...-.|++|++++|+|+++|....  .+.|+|.  |+.      +.          ...++.+..+  .....|+|.+
T Consensus         5 ~esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~   84 (120)
T d1dn0b1           5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSS   84 (120)
T ss_dssp             EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             EeECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccc
Confidence            35566779999999999999986543  5889882  211      11          1245666654  3467899999


Q ss_pred             CCCCCCEEEEEEE
Q psy16852         69 PTKEDIGVYTCKA   81 (579)
Q Consensus        69 ~~~~d~G~Y~C~~   81 (579)
                      ++.+|++.|.|..
T Consensus        85 l~~eDtA~YYCAr   97 (120)
T d1dn0b1          85 VTAADTAVYYCAR   97 (120)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccccEEEEEe
Confidence            9999999999943

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=3.7e-06  Score=60.15  Aligned_cols=71  Identities=24%  Similarity=0.442  Sum_probs=51.8

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE--------------ec--CCCCEEEEEe--CCEEEEEEcC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE--------------LH--ATEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~--------------~~--~~~~~~~~~~--~~~~~L~i~~   68 (579)
                      .+.....+++|++++|+|++.|....  .+.|+|.  |+.              ..  ...++.+..+  .+...|+|.+
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~s   84 (117)
T d1c5db1           5 LESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNS   84 (117)
T ss_dssp             EEECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECS
T ss_pred             eeECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccc
Confidence            45667789999999999999887543  5889882  211              11  1245655554  3467899999


Q ss_pred             CCCCCCEEEEEEE
Q psy16852         69 PTKEDIGVYTCKA   81 (579)
Q Consensus        69 ~~~~d~G~Y~C~~   81 (579)
                      ++.+|++.|.|..
T Consensus        85 L~~eDtAvYYCAr   97 (117)
T d1c5db1          85 LQTEDTAIYFCTR   97 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCcceEEEEec
Confidence            9999999999964

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.20  E-value=6.9e-06  Score=59.29  Aligned_cols=72  Identities=17%  Similarity=0.365  Sum_probs=51.4

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec----------CCCCEEEEEe--CCEEEEEEcCC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH----------ATEHYLITTV--ESVSTLEIINP   69 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~----------~~~~~~~~~~--~~~~~L~i~~~   69 (579)
                      +...-.|++|++++|+|.+.|....  .+.|+|.  |+.      +.          ...++.+..+  .....|+|.++
T Consensus         5 esg~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L   84 (119)
T d1kxvc_           5 ESGGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSL   84 (119)
T ss_dssp             EECCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSC
T ss_pred             eECCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccC
Confidence            3455679999999999999886543  4889882  211      11          1245665544  34678999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy16852         70 TKEDIGVYTCKATN   83 (579)
Q Consensus        70 ~~~d~G~Y~C~~~~   83 (579)
                      +.+|++.|.|....
T Consensus        85 ~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          85 KPDDTAMYYCKPSL   98 (119)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcCCcceEeeeecc
Confidence            99999999997643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.20  E-value=3.6e-06  Score=59.96  Aligned_cols=43  Identities=26%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             CCeeecCCCceeeecCCCeEEEEEEEeeCC--CeEEEeeCCEEcCC
Q psy16852        407 APKFTKPLKPVIAEAQSPATLKATVTGRPT--PSICWYRGKEEILP  450 (579)
Q Consensus       407 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~~~~l~~  450 (579)
                      +|.+...+. ..+..|+.++|.|.+.|+-+  ..|.|+++|..+..
T Consensus         3 pP~V~v~p~-~~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~   47 (100)
T d1muja1           3 APQATVFPK-SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVAD   47 (100)
T ss_dssp             CCEEEEEES-SCCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCS
T ss_pred             CCEEEEEcC-CccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccC
Confidence            555544222 13556889999999999643  38999999988753

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.20  E-value=3.1e-06  Score=62.12  Aligned_cols=84  Identities=15%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             ceeeecCCCeEEEEEEEee-CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      .+++.+|++++|.|...+. ....+.|++..    ++....           +.+.......      ...........+
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~----~g~~~~-----------~i~~~~~~~~------~~~~~~~~~~~~   65 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQI----HSQGPQ-----------YIIHGLKNNE------TNEMASLIITED   65 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEEC----TTSCCE-----------EEEEESSSCE------ECSSCEEEECTT
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEEC----CCCccE-----------Eeeeeeceec------ccccceeeeccc
Confidence            4668999999999997643 34468999832    111111           1111111100      001122234445


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeC
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .....|+|.+++.+|+|.|.|.+...
T Consensus        66 ~~~~~L~I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          66 RKSSTLILPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             CSEEEEEESSCCGGGCEEEEEEEEES
T ss_pred             CCeeeehhcccccCCceEEEEEEeCC
Confidence            67788999999999999999988643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.20  E-value=3.3e-06  Score=62.16  Aligned_cols=86  Identities=14%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             CCCceeeecCCCeEEEEEEEee---CC---CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        413 PLKPVIAEAQSPATLKATVTGR---PT---PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~---p~---~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      .|..+.+.+|++++|.|...+.   ..   .-+.|++..    ++....+           .+........+      ..
T Consensus         7 ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~----~g~~p~l-----------l~~~~~~~~~~------~~   65 (113)
T d1q9ra1           7 SPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQK----PGQSPKL-----------LIYWASTRESG------VP   65 (113)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEEC----TTSCCEE-----------EEETTTEECTT------SC
T ss_pred             cCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecC----CCCCCEE-----------EEecccccCCC------CC
Confidence            3455668999999999987642   11   248999842    1111111           11110000000      11


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .......+.....|.|.+++.+|+|.|.|.+.+
T Consensus        66 ~~~s~~~s~~~~~L~I~~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          66 DRFTGSGSGTDFTLTITSVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ccEEEeCCCCeEeEEecccccCCCeEEEecccC
Confidence            223344566777899999999999999997653

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.19  E-value=6.5e-06  Score=60.34  Aligned_cols=87  Identities=13%  Similarity=0.201  Sum_probs=53.3

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee--
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK--  490 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~--  490 (579)
                      .+..+.+.+|+.++|.|.........+.|++..    ++....           +.+........+      ...++.  
T Consensus         6 ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~----pg~~p~-----------~l~~~~~~~~~~------~~~~f~~~   64 (110)
T d1ac6a_           6 TEGQVALSEEDFLTIHCNYSASGYPALFWYVQY----PGEGPQ-----------FLFRASRDKEKG------SSRGFEAT   64 (110)
T ss_dssp             CCSEEEEETTEEEEECEEEECSSCCEEEEEEEC----TTSCCE-----------EEEEECSTTCEE------EETTEEEE
T ss_pred             CCCeEEECCCCCEEEEEEecCCCCcceEEEEcC----CCCceE-----------EeeeeeeecccC------CCCceeee
Confidence            345567999999999999875555579999842    111111           111111111111      111222  


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ...++....|+|.++..+|+|.|.|.+...
T Consensus        65 ~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          65 YNKEATSFHLQKASVQESDSAVYYCALSGG   94 (110)
T ss_dssp             CBTTTTBCCEEEEEECGGGCEEEEEEEEET
T ss_pred             ecCCCCEEeeeecCcCcCCCcccceeecCC
Confidence            233456678999999999999999988654

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.19  E-value=4.2e-06  Score=60.95  Aligned_cols=71  Identities=24%  Similarity=0.427  Sum_probs=49.8

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCC----CeeEEEEC--CEEe--------------c--CCCCEEEEEe--CCEEEEEEc
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPL----PTMTWQKD--GTEL--------------H--ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~----~~v~W~~~--g~~~--------------~--~~~~~~~~~~--~~~~~L~i~   67 (579)
                      ++....+++|++|+|.|++.|...    ..+.|||.  |+.+              .  ...++.+..+  .....|+|.
T Consensus         6 qsg~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~   85 (120)
T d2agjh1           6 ESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLT   85 (120)
T ss_dssp             CCCCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEE
T ss_pred             eECCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEE
Confidence            345667899999999999987542    25789982  2210              0  1245555443  235789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        86 ~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          86 NLDPVDTATYYCART  100 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeeeccceEEeeEec
Confidence            999999999999744

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.19  E-value=5.1e-06  Score=60.98  Aligned_cols=84  Identities=15%  Similarity=0.232  Sum_probs=51.9

Q ss_pred             ceeeecCCCeEEEEEEEeeC--CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRP--TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      .+++.+|++++|.|...+..  ...+.|++..    +.....+           .+........+      ..++.....
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~----~g~~~~~-----------l~~~~~~~~~~------~~~r~~~~~   67 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQF----PGTVPKL-----------VIYENNERPSG------IPDRFSGSK   67 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEEC----TTSCCEE-----------EEBTTTBCCTT------CCTTEEEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeee----cccceEE-----------EeeecCCCccc------cccceeeeC
Confidence            46789999999999886433  3469999831    1111111           11110000000      112334455


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ++....|+|.+++.+|+|.|.|.+...
T Consensus        68 ~~~~~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          68 SGTSATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             CCCEeeeEEeeeccccCcceEEeecCC
Confidence            677788999999999999999988654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.19  E-value=6e-06  Score=59.11  Aligned_cols=71  Identities=20%  Similarity=0.402  Sum_probs=51.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------e---------c--CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------L---------H--ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~---------~--~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|+++.|.|+++|....  .+.|+|  .|+.      |         .  ...++.+..+  .....|+|.
T Consensus         5 ~esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~   84 (117)
T d1jnhb1           5 QQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLN   84 (117)
T ss_dssp             EECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccc
Confidence            35667789999999999999987544  578988  1211      1         1  1245666554  346789999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          85 SLTSEDSAVYSCSR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999965

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=3.7e-06  Score=60.21  Aligned_cols=71  Identities=20%  Similarity=0.411  Sum_probs=50.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--CeeEEEEC--CE--E----ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQKD--GT--E----LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~--g~--~----~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|+++.|+|++.|...  -.+.|+|.  |+  +    |.           ...++.+..+  .....|+|.
T Consensus         5 ~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~   84 (118)
T d1nlbh1           5 VQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQIN   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeee
Confidence            4566778999999999999988653  35889882  21  1    11           1235555543  346789999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|+|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          85 SLKNEDTATYFCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ecccCcceEEEEee
Confidence            99999999999953

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.18  E-value=5.6e-06  Score=59.59  Aligned_cols=72  Identities=24%  Similarity=0.411  Sum_probs=52.5

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC---eeEEEE--CCEEe------c----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP---TMTWQK--DGTEL------H----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~---~v~W~~--~g~~~------~----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      ++..+..+++|+++.|+|++.|....   .+.|+|  .|+.+      .          ...++.+..+  .+...|+|.
T Consensus         5 ~esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~   84 (119)
T d1ncwh1           5 QQSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLN   84 (119)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccc
Confidence            45677889999999999999987653   368987  22211      1          1245555554  346789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|+|...
T Consensus        85 sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          85 SVTTEDTATYYCAGL   99 (119)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccCCceEEEEeEe
Confidence            999999999999654

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.18  E-value=4.6e-06  Score=61.06  Aligned_cols=85  Identities=19%  Similarity=0.268  Sum_probs=51.0

Q ss_pred             CCceeeecCCCeEEEEEEEeeC-----CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce
Q psy16852        414 LKPVIAEAQSPATLKATVTGRP-----TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE  488 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p-----~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~  488 (579)
                      |..+++.+|++++|.|.+.+..     ..-+.|++..    ++....           +.+........|.      .++
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~----pg~~~~-----------~l~~~~~~~~~g~------~~~   66 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQR----PGQSPK-----------RLIYLGTKLDSGV------PDR   66 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEEC----TTSCEE-----------EEEETTTEECTTC------CTT
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcC----CCCceE-----------EEEeccCcCCCCc------Cce
Confidence            4456789999999999976432     2358899841    111111           1111111111111      122


Q ss_pred             eeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        489 TKIMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       489 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      +....++....|.|.+++.+|+|.|.|...+
T Consensus        67 fs~~~~~~~~~L~I~~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          67 FTGSGSGTDFTLKISRVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             EEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             EEeeCCCCEEEEEECccccCcCEeEEEEcCC
Confidence            3344566778899999999999999996543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.18  E-value=2.3e-06  Score=63.66  Aligned_cols=76  Identities=14%  Similarity=0.265  Sum_probs=53.3

Q ss_pred             cCCCceEEccCCcEEEEEEEEe-ecCCeEEEEECC--EE---cc----------CCCCceEEEcCCCCeEEEEECcCCCC
Q psy16852        110 KPLKPVIAEAQSPATLKATVTG-RPTPSICWYRGK--EE---IL----------PDNGHTMEFNPTTGECVLSISEATPQ  173 (579)
Q Consensus       110 ~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~--~~---~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~  173 (579)
                      ..+..+.+.+|++++|.|.... .....+.||+..  +.   +.          ...+.....+.......|.|.+++.+
T Consensus         4 Q~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1fo0a_           4 QTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIE   83 (115)
T ss_dssp             CCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcc
Confidence            3456678899999999998753 334578999832  11   10          01234444555556789999999999


Q ss_pred             CCeEEEEEEEcC
Q psy16852        174 DEAVYSVKAVNT  185 (579)
Q Consensus       174 d~G~Y~C~~~~~  185 (579)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1fo0a_          84 DSAVYFCAMRGD   95 (115)
T ss_dssp             GCEEEEEEEECC
T ss_pred             ccccccceeecC
Confidence            999999988644

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.17  E-value=7.5e-06  Score=59.87  Aligned_cols=75  Identities=21%  Similarity=0.399  Sum_probs=54.3

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCE--E----ec-----------CCCCEEEEEe--CCEEEEE
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGT--E----LH-----------ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~--~----~~-----------~~~~~~~~~~--~~~~~L~   65 (579)
                      ++.++....+++|+++.|+|+++|....  .+.|+|  .|+  +    +.           ...++.+..+  .....|+
T Consensus         2 ~L~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~   81 (130)
T d1rhhb1           2 LLEQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYME   81 (130)
T ss_dssp             CEEECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             CEeccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEE
Confidence            4567788889999999999999876433  588887  221  1    11           1245555554  3457799


Q ss_pred             EcCCCCCCCEEEEEEEEc
Q psy16852         66 IINPTKEDIGVYTCKATN   83 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~   83 (579)
                      |.+++.+|++.|.|....
T Consensus        82 ~~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          82 LTNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             eeccCCCCcEEEEEEeec
Confidence            999999999999997643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.17  E-value=7e-06  Score=60.88  Aligned_cols=93  Identities=13%  Similarity=0.235  Sum_probs=50.2

Q ss_pred             CCceeeecCCCeEEEEEEEee-CCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceee--
Q psy16852        414 LKPVIAEAQSPATLKATVTGR-PTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETK--  490 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~--  490 (579)
                      +....+.+|++++|+|.+.+. ....+.|++....-  ..+ .+          ..|..........|.-.+...++.  
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~--~~~-~l----------~~i~~~~~~~~~~~~~~~~~~r~~~~   71 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDP--KDK-YF----------EFLASWSSSKGVLYGESVDKKRNIIL   71 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECS--SCE-EE----------EEEEEEETTTEEEECGGGTTTCCEEE
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCC--CCe-EE----------EEeeEEecccCcEecCCcCCCCEEEE
Confidence            455678999999999998763 44579999842100  000 00          001111111100010001111111  


Q ss_pred             eeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        491 IMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       491 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ...+.....|+|.+++.+|+|.|.|.+..
T Consensus        72 ~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          72 ESSDSRRPFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             ESTTSSSCEEEECSCCGGGCEEEEEEEEC
T ss_pred             EeCCCCeEEEeecccCCCCCcEEEEeEcC
Confidence            12344566799999999999999998753

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.17  E-value=5.3e-06  Score=60.66  Aligned_cols=72  Identities=15%  Similarity=0.330  Sum_probs=52.4

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|++++|+|++.|....  .+.|+|  .|+.      |.           ...++.+..+  .+...|+|.
T Consensus         5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~   84 (125)
T d1rihh1           5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN   84 (125)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence            45777889999999999999886543  588887  2221      11           1245555544  346789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|+|...
T Consensus        85 sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          85 SLTSEDSAVYYCARE   99 (125)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcccceEEEEeee
Confidence            999999999999754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=5.8e-06  Score=58.50  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=49.2

Q ss_pred             cCCCeEEEEEEEe-eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeE
Q psy16852        421 AQSPATLKATVTG-RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV  499 (579)
Q Consensus       421 ~g~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~  499 (579)
                      .++.++|.|.+.| +|.+.|.|+++|..+...... .               ......|.|.....              
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~-~---------------~~~~~~g~y~v~S~--------------   64 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTT-V---------------SQDPETELYAVSSK--------------   64 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEE-E---------------EECTTTCCEEEEEE--------------
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEeccccee-e---------------EecCCCccEEEEEE--------------
Confidence            4677899999997 698999999999887543211 1               11223455644433              


Q ss_pred             EEEeecccccceeEEEEEEeCCeeEEEEE
Q psy16852        500 LLISKITRDQIGDVTCRAENVAGSVTCTA  528 (579)
Q Consensus       500 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  528 (579)
                      |.+.   ..+...|+|.+.+..-......
T Consensus        65 L~v~---~~~~~~~tC~V~h~~l~~~~~~   90 (95)
T d1dr9a2          65 LDFN---MTTNHSFMCLIKYGHLRVNQTF   90 (95)
T ss_dssp             EEEE---TTSCEEEEEEEEETTCCEEEEE
T ss_pred             EEcc---CCccceEEEEEEecCCCCcEEE
Confidence            6654   3345689999998866555443

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.16  E-value=4.4e-06  Score=61.34  Aligned_cols=91  Identities=14%  Similarity=0.146  Sum_probs=53.2

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      ..|....+.+|++++|.|...+ ....+.|++..    ++....           +.+.......  ...-...+.....
T Consensus         6 Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~----~g~~p~-----------~l~~~~~~~~--~~~~~~~~~~~~~   67 (110)
T d2aq2a1           6 QSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQD----TGHGLR-----------LIHYSYGVGN--TEKGDIPDGYEAS   67 (110)
T ss_dssp             EECSEEEECTTCCEEEEEEESS-CCSEEEEEEEC----TTSCEE-----------EEEEESSTTC--CEECSCCTTCEEE
T ss_pred             EeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEc----ccCCce-----------EEEEEeecCC--cccCCCCCCEEEE
Confidence            3345567899999999998764 34579999842    111111           1111100000  0000011222234


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ........|+|.+++.+|+|.|.|.+...
T Consensus        68 ~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          68 RPSQEQFSLILESATPSQTSVYFCASGGG   96 (110)
T ss_dssp             EEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             eccCCEEEEEECCCCHhhCEEEEEeeCCC
Confidence            45567788999999999999999987643

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.1e-05  Score=57.04  Aligned_cols=78  Identities=18%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEe-eCCCeeEEEECCEEecCCCCEEEEEeC-C----EEEEEEcCCCCCCCEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEG-HPLPTMTWQKDGTELHATEHYLITTVE-S----VSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~-~~~~~v~W~~~g~~~~~~~~~~~~~~~-~----~~~L~i~~~~~~d~G~Y~   78 (579)
                      -+|.+....    ...|+.++|.|.+.| +|.+.|.|++||..+............ +    .+.|.+.   ..+...|+
T Consensus         4 ~~P~V~~~~----~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~t   76 (95)
T d1dr9a2           4 PTPSISDFE----IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFM   76 (95)
T ss_dssp             CCCEEEEEE----CSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEE
T ss_pred             CCCEEEecc----cCCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEE
Confidence            345554332    236888999999987 588899999999888644322221111 1    2456664   34678999


Q ss_pred             EEEEcCCeeeE
Q psy16852         79 CKATNIGGVAT   89 (579)
Q Consensus        79 C~~~~~~g~~~   89 (579)
                      |.+.+..-...
T Consensus        77 C~V~h~~l~~~   87 (95)
T d1dr9a2          77 CLIKYGHLRVN   87 (95)
T ss_dssp             EEEEETTCCEE
T ss_pred             EEEEecCCCCc
Confidence            99998754433

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=6.9e-06  Score=58.65  Aligned_cols=76  Identities=16%  Similarity=0.330  Sum_probs=49.3

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEee-C-CCeeEEEECCEEecCCCCEEEEEeCC-----EEEEEEcCCCCCCCEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGH-P-LPTMTWQKDGTELHATEHYLITTVES-----VSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~-~~~v~W~~~g~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~   78 (579)
                      ||.+...+... +..|+.++|.|.+.|+ | ...++|++||..+............+     .+.|.+   ..++.+.|+
T Consensus         4 ~P~V~v~~~~~-~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v---~~~~~~~yt   79 (99)
T d1lk2b_           4 TPQIQVYSRHP-PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEF---TPTETDTYA   79 (99)
T ss_dssp             CCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEE---CCCSSCCEE
T ss_pred             CCEEEEEcCCC-ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEe---cCcCCCEEE
Confidence            56655543322 4578999999999986 3 34899999999886543222222222     234444   455677899


Q ss_pred             EEEEcCC
Q psy16852         79 CKATNIG   85 (579)
Q Consensus        79 C~~~~~~   85 (579)
                      |++.+..
T Consensus        80 C~V~H~s   86 (99)
T d1lk2b_          80 CRVKHDS   86 (99)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998864

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.15  E-value=5.3e-06  Score=59.71  Aligned_cols=71  Identities=20%  Similarity=0.334  Sum_probs=51.6

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ecC-----------CCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LHA-----------TEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~~-----------~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|++|.|+|++.|....  .+.|+|.  |+.      |..           ..++.+..+  .+...|+|.
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~   84 (119)
T d1eapb1           5 QESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLN   84 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeee
Confidence            45677889999999999999886533  5889872  211      111           235555543  346789999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|+|..
T Consensus        85 sL~~eDTAvYYCAr   98 (119)
T d1eapb1          85 SLTSEDSAVYFCKR   98 (119)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             cccCCcceEEEEEE
Confidence            99999999999964

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.15  E-value=8e-06  Score=59.33  Aligned_cols=71  Identities=18%  Similarity=0.336  Sum_probs=52.5

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|+++.|+|++.|....  .+.|+|  .|+.      |.           ...++.+..+  .....|+|.
T Consensus         4 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~   83 (126)
T d1lmka1           4 QQSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLS   83 (126)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeec
Confidence            45777889999999999999987543  588887  2211      11           1245555544  456889999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|.+.|+|..
T Consensus        84 ~L~~eDTAvYYCAr   97 (126)
T d1lmka1          84 SLTSEDSAVYYCAR   97 (126)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999964

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=3e-06  Score=62.79  Aligned_cols=85  Identities=16%  Similarity=0.207  Sum_probs=52.1

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +..+++.+|+.++|.|...+.-...+.|++..    ++....           +.+........|      ....+....
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~----pg~~~~-----------~l~~~~~~~~~~------~~~~fs~~~   66 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQK----LGEAPK-----------LLIYNTNSLQTG------IPSRFSGSG   66 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEEC----TTSCCE-----------EEEETTTEECTT------CCTTEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeee----cccccE-----------EEEEeeccccCc------eeeeecccC
Confidence            44556889999999998765444579999842    111111           111111111111      011233344


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      ++....|.|.+++.+|+|.|.|.+.+
T Consensus        67 ~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          67 SGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             EBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             CCCEEEEEcccCccCCCeEEEeeccC
Confidence            56678899999999999999998764

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.15  E-value=6.6e-06  Score=58.57  Aligned_cols=71  Identities=17%  Similarity=0.317  Sum_probs=50.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|++++|+|.+.|....  .+.|+|.  |+.      +.           ...++.+..+  .+...|+|.
T Consensus         5 ~eSG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~   84 (114)
T d1indh1           5 VESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLN   84 (114)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeee
Confidence            34566789999999999999886543  5889882  211      11           1235555544  345779999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCA~   98 (114)
T d1indh1          85 SLRSEDTALYFCAS   98 (114)
T ss_dssp             SCCGGGCEEEEEEC
T ss_pred             eeccCcccEEEECC
Confidence            99999999999964

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.14  E-value=4.3e-06  Score=59.88  Aligned_cols=72  Identities=21%  Similarity=0.396  Sum_probs=51.2

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec--------C--CCCEEEEEe--CCEEEEEEcC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH--------A--TEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~--------~--~~~~~~~~~--~~~~~L~i~~   68 (579)
                      .+.....+++|++++|+|++.|....  .+.|+|.  |+.      +.        .  ..++.+..+  .....|+|.+
T Consensus         5 ~esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~   84 (116)
T d1a2yb_           5 QESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNS   84 (116)
T ss_dssp             EEECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred             EeECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceee
Confidence            35666789999999999999986543  5889882  211      11        1  124444443  3467899999


Q ss_pred             CCCCCCEEEEEEEE
Q psy16852         69 PTKEDIGVYTCKAT   82 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~   82 (579)
                      ++.+|++.|+|.-.
T Consensus        85 l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          85 LHTDDTARYYCARE   98 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eeeccceEEEEEEe
Confidence            99999999999754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.14  E-value=8.8e-06  Score=59.82  Aligned_cols=87  Identities=18%  Similarity=0.250  Sum_probs=54.1

Q ss_pred             CceeeecCCCeEEEEEEEeeC---CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRP---TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      ..+++.+|++++|.|...+..   ...+.|++..    ++....           +.+........+      .......
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~----pg~~~~-----------~l~~~~~~~~~~------~~~~~~~   66 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQH----PGKAPK-----------LLTYEVNKRPSG------VSDRFSG   66 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEEC----TTSCCE-----------EEEBTTTBCCTT------SCTTEEE
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeee----ecccce-----------eeeeeeccccCC------CcccEEE
Confidence            456799999999999987532   2358999842    111111           111111111111      1123345


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      ..+.....|.|.+++.+|+|.|.|.+.+..+
T Consensus        67 ~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~~~   97 (112)
T d1lgva1          67 SKSGNSASLTISGLQAEDEADYYCSSYDGSS   97 (112)
T ss_dssp             EEETTEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             ECCCCEeeEEeCcCccccCEEEEEeeecCCC
Confidence            5566788899999999999999998875443

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.13  E-value=4e-06  Score=61.94  Aligned_cols=75  Identities=19%  Similarity=0.308  Sum_probs=54.1

Q ss_pred             cCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--EE------------ccCCCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852        110 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EE------------ILPDNGHTMEFNPTTGECVLSISEATPQDE  175 (579)
Q Consensus       110 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (579)
                      ..+..+.+.+|++++|.|...+ ....+.||+..  ..            .....+.....+.......|.|.++..+|+
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT   83 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             eCCCeEEECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccce
Confidence            3456678899999999998754 33579999831  10            011234445556667778999999999999


Q ss_pred             eEEEEEEEcC
Q psy16852        176 AVYSVKAVNT  185 (579)
Q Consensus       176 G~Y~C~~~~~  185 (579)
                      |.|.|.+...
T Consensus        84 a~YyCa~~~~   93 (115)
T d1ogad1          84 GLYLCAGAGS   93 (115)
T ss_dssp             EEEEEEEECT
T ss_pred             eeEcccccCC
Confidence            9999987644

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.12  E-value=9.8e-06  Score=58.20  Aligned_cols=74  Identities=16%  Similarity=0.376  Sum_probs=52.4

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|+++.|.|++.|....  .+.|+|  .|+.      |.           ...++.+..+  .+...|+|.
T Consensus         5 ~eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~   84 (118)
T d2fbjh1           5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMS   84 (118)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeecccc
Confidence            34566789999999999999986543  578987  2211      11           1235555543  345779999


Q ss_pred             CCCCCCCEEEEEEEEcC
Q psy16852         68 NPTKEDIGVYTCKATNI   84 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~~   84 (579)
                      +++.+|++.|.|.....
T Consensus        85 sL~~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          85 KVRSEDTALYYCARLHY  101 (118)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             ccCCCcceEEEeeEecC
Confidence            99999999999976543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.12  E-value=2.1e-05  Score=56.59  Aligned_cols=73  Identities=16%  Similarity=0.336  Sum_probs=52.3

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------e-----------c--CCCCEEEEEe--CCEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------L-----------H--ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~-----------~--~~~~~~~~~~--~~~~~L~   65 (579)
                      .++....+++|++++|.|+++|....  .+.|+|  .|+.      +           .  ...++.+..+  .+...|+
T Consensus         5 ~esG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~   84 (120)
T d1dlfh_           5 EESGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQ   84 (120)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             eeECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccc
Confidence            34667779999999999999886543  588988  2221      1           1  1135555544  3467899


Q ss_pred             EcCCCCCCCEEEEEEEEc
Q psy16852         66 IINPTKEDIGVYTCKATN   83 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~~   83 (579)
                      |.+++.+|++.|.|....
T Consensus        85 ~~~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          85 MNTLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             ECSCCGGGCEEEEEEEEB
T ss_pred             eeeccCCCceEEEeeEec
Confidence            999999999999997543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.11  E-value=7.9e-06  Score=59.36  Aligned_cols=84  Identities=14%  Similarity=0.194  Sum_probs=52.8

Q ss_pred             ceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeC
Q psy16852        416 PVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDG  495 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~  495 (579)
                      ...+.+|++++|.|.........+.|++..    ++...           .+.+........|.      .+++....+.
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~----~g~~p-----------~~l~y~~~~~~~~~------~~rf~~~~~~   66 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQQK----SDKNI-----------LLLIYMDNKRPSGI------PERFSGSTSG   66 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEEC----TTCCE-----------EEEEBTTTBCCTTS------CTTEEEEEET
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEecc----cccce-----------eeeccccccccccc------cceeeecCCC
Confidence            466889999999998754444468999831    11111           12222221111111      1233455566


Q ss_pred             CeeEEEEeecccccceeEEEEEEeC
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ....|.|.+++.+|+|.|.|.+...
T Consensus        67 ~~~~L~I~~l~~~Dsa~YyCA~~~~   91 (108)
T d1nfde1          67 TTATLTISGAQPEDEAAYYCLSSYG   91 (108)
T ss_dssp             TEEEEEETTCCGGGCSEEEEEEEET
T ss_pred             CEeeeeEcCccccCCceEEEEeecC
Confidence            7788999999999999999987643

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.10  E-value=1.2e-05  Score=58.30  Aligned_cols=72  Identities=19%  Similarity=0.345  Sum_probs=51.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--CeeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|++|+|.|++.|...  -.+.|||  .|+.      +.           ...++.+..+  .....|+|.
T Consensus         5 ~esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~   84 (121)
T d1j05b_           5 QQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLT   84 (121)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccc
Confidence            3567788999999999999987543  3588988  2221      11           1235555443  346789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|+|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          85 SLTSEDTAVYYCAPF   99 (121)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcCcceEEEeEee
Confidence            999999999999754

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.10  E-value=2.3e-06  Score=61.18  Aligned_cols=78  Identities=15%  Similarity=0.368  Sum_probs=50.6

Q ss_pred             CCCCccccccCceeeeCCCCEEEEEEEEee-C-CCeeEEEECCEEecCCCCEE-EEEeC-C----EEEEEEcCCCCCCCE
Q psy16852          4 VLAPRFIEKIQPVVSHQEQPALFTCKVEGH-P-LPTMTWQKDGTELHATEHYL-ITTVE-S----VSTLEIINPTKEDIG   75 (579)
Q Consensus         4 ~~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~-~~~v~W~~~g~~~~~~~~~~-~~~~~-~----~~~L~i~~~~~~d~G   75 (579)
                      -+||.+...|... +..|+..+|.|.+.|+ | ...++|++||+.+..+.... ....+ +    .+.|.+..   .+..
T Consensus         3 ~v~P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~   78 (101)
T d1fnga1           3 NVAPEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDD   78 (101)
T ss_dssp             CBCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTC
T ss_pred             CcCCeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCC
Confidence            4788877754443 4568899999999986 4 34899999999886431110 01111 1    24566644   4455


Q ss_pred             EEEEEEEcCC
Q psy16852         76 VYTCKATNIG   85 (579)
Q Consensus        76 ~Y~C~~~~~~   85 (579)
                      .|+|++.+..
T Consensus        79 ~ytC~V~H~s   88 (101)
T d1fnga1          79 FYDCEVDHWG   88 (101)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEECC
Confidence            7999998864

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.10  E-value=1.4e-05  Score=58.22  Aligned_cols=73  Identities=23%  Similarity=0.373  Sum_probs=52.8

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CC--------------EE-ec--CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DG--------------TE-LH--ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g--------------~~-~~--~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|+++.|+|++.|....  .+.|+|  .|              .. ..  ...++.+..+  .+...|+|.
T Consensus         5 ~esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~   84 (128)
T d2nxyd1           5 VESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELR   84 (128)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeee
Confidence            35667779999999999999986543  478877  11              11 11  1246666655  356789999


Q ss_pred             CCCCCCCEEEEEEEEc
Q psy16852         68 NPTKEDIGVYTCKATN   83 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~   83 (579)
                      +++.+|.+.|+|....
T Consensus        85 sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          85 NLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             eccccCceEEEEeEEe
Confidence            9999999999998653

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.10  E-value=7.5e-06  Score=59.58  Aligned_cols=72  Identities=19%  Similarity=0.458  Sum_probs=49.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC----eeEEEE--CCEE------ecC----------CCCEEEEEe--CCEEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP----TMTWQK--DGTE------LHA----------TEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~----~v~W~~--~g~~------~~~----------~~~~~~~~~--~~~~~L~i   66 (579)
                      .+.....|++|++++|+|.+.|....    .+.|||  .|+.      +..          ..++.+..+  .....|+|
T Consensus         5 ~esg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i   84 (123)
T d1r0ah1           5 KESGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNM   84 (123)
T ss_dssp             EEECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEE
T ss_pred             EeECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcce
Confidence            34566789999999999999876432    367987  2211      111          134555443  34578999


Q ss_pred             cCCCCCCCEEEEEEEE
Q psy16852         67 INPTKEDIGVYTCKAT   82 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~   82 (579)
                      .+++.+|++.|.|...
T Consensus        85 ~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          85 MTVETADTAIYYCAQS  100 (123)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eecccccceEEeeccc
Confidence            9999999999999743

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.10  E-value=1.4e-05  Score=57.79  Aligned_cols=73  Identities=15%  Similarity=0.359  Sum_probs=51.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|+++.|.|++.|....  .+.|+|  .|+.      |.           ...++.+..+  .....|+|.
T Consensus         5 ~esG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~   84 (123)
T d1mqkh_           5 QESGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMS   84 (123)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCccccccccee
Confidence            34566789999999999999886543  578988  2211      11           1235555543  346779999


Q ss_pred             CCCCCCCEEEEEEEEc
Q psy16852         68 NPTKEDIGVYTCKATN   83 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~   83 (579)
                      +++.+|++.|+|....
T Consensus        85 ~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          85 SLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             eeccCcccceeEEecC
Confidence            9999999999997654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.10  E-value=1.6e-05  Score=57.20  Aligned_cols=72  Identities=24%  Similarity=0.384  Sum_probs=52.1

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|+++.|.|++.|....  .+.|+|.  |+.      +.           ...++.+..+  .+...|+|.
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~   84 (119)
T d1rz7h1           5 VQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELS   84 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeee
Confidence            35667789999999999999986543  5889872  211      11           1235555544  446789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|+|...
T Consensus        85 sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          85 SLRSEDTAVYYCAAD   99 (119)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCcccceEEEEeec
Confidence            999999999999653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.10  E-value=1.6e-05  Score=58.84  Aligned_cols=72  Identities=21%  Similarity=0.386  Sum_probs=51.6

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCC----eeEEEEC--CEE---e-------------cCCCCEEEEEe--CCEEEEEEc
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLP----TMTWQKD--GTE---L-------------HATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~----~v~W~~~--g~~---~-------------~~~~~~~~~~~--~~~~~L~i~   67 (579)
                      +.....|++|++++|.|.+.|....    .+.|||.  |+.   +             ....++.+..+  .....|+|.
T Consensus         6 esg~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~   85 (132)
T d1tjgh1           6 ESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMT   85 (132)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccc
Confidence            4566789999999999999876532    4789972  111   0             11345665554  345779999


Q ss_pred             CCCCCCCEEEEEEEEc
Q psy16852         68 NPTKEDIGVYTCKATN   83 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~   83 (579)
                      +++.+|++.|.|....
T Consensus        86 ~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          86 RVSPVDTATYFCAHRR  101 (132)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             cCCcccceEEEEEEec
Confidence            9999999999997654

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.10  E-value=1.3e-05  Score=58.30  Aligned_cols=72  Identities=22%  Similarity=0.378  Sum_probs=52.0

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|+++.|+|.++|....  .+.|+|  .|+.      +.           -..++.+..+  .....|+|.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~   84 (127)
T d2fx7h1           5 VQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELN   84 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeec
Confidence            35667779999999999999986543  488987  2211      11           1245555544  346789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          85 SLRPEDTAVYYCARE   99 (127)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcccceEEEEeec
Confidence            999999999999754

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.09  E-value=8.8e-06  Score=59.12  Aligned_cols=71  Identities=15%  Similarity=0.353  Sum_probs=51.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|++|.|.|++.|....  .+.|+|  .|+.      |.           ...++.+..+  .+...|+|.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~   84 (127)
T d1n0xh1           5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence            46778889999999999999986543  588988  2211      11           1235555544  346789999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|+|.-
T Consensus        85 ~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          85 SLRSADTAVYYCAR   98 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEEe
Confidence            99999999999963

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.09  E-value=2.7e-06  Score=60.38  Aligned_cols=78  Identities=23%  Similarity=0.367  Sum_probs=50.3

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEee-C-CCeeEEEECCEEecCCCCEE-EEEeC-C----EEEEEEcCCCCCCCEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGH-P-LPTMTWQKDGTELHATEHYL-ITTVE-S----VSTLEIINPTKEDIGV   76 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~-~~~v~W~~~g~~~~~~~~~~-~~~~~-~----~~~L~i~~~~~~d~G~   76 (579)
                      .||.+...+... +..|+.++|.|.+.++ | ...++|++||..+..+.... ....+ +    .+.|.+.   .++...
T Consensus         2 ~PP~V~v~~~~~-~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~   77 (98)
T d1hdmb1           2 RPPSVQVAKTTP-FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDT   77 (98)
T ss_dssp             BCCEEEEEECCC-CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCC
T ss_pred             CCCEEEEEcCCC-ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCE
Confidence            367766654332 5678899999999986 3 45899999999885432111 11111 1    2345553   455668


Q ss_pred             EEEEEEcCCe
Q psy16852         77 YTCKATNIGG   86 (579)
Q Consensus        77 Y~C~~~~~~g   86 (579)
                      |+|.+.+...
T Consensus        78 ytC~V~H~sl   87 (98)
T d1hdmb1          78 YTCVVEHIGA   87 (98)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999998654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.08  E-value=7.8e-06  Score=60.00  Aligned_cols=87  Identities=15%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeC-----CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeec
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRP-----TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASS  486 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p-----~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~  486 (579)
                      ..|...++.+|++++|.|...+..     ...+.|++..    ++....           +.+........+      ..
T Consensus         7 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~----~g~~p~-----------~l~~~~~~~~~~------~~   65 (113)
T d1n4xl_           7 QTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQK----PGQSPQ-----------LLIYKVSNRFSG------VP   65 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEEC----TTSCCE-----------EEEETTTEECTT------CC
T ss_pred             CcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecC----CCCccE-----------EEEEecCCCccc------cC
Confidence            344556789999999999986432     2468999841    111111           111111100000      11


Q ss_pred             ceeeeeeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        487 TETKIMTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       487 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .++....++....|+|.+++.+|+|.|.|...+
T Consensus        66 ~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          66 DRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             TTEEEEECSSEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCeeeeccCCcccCccCCCCcccCEEEEEEECC
Confidence            223344567778899999999999999996543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.08  E-value=1.8e-05  Score=57.59  Aligned_cols=72  Identities=22%  Similarity=0.375  Sum_probs=52.2

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      ++...-.|++|+++.|+|+++|....  .+.|+|.  |+.      |.           ...++.+..+  .....|+|.
T Consensus         4 ~esG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~   83 (124)
T d1zvya1           4 VESGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMD   83 (124)
T ss_dssp             EEECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceec
Confidence            34566789999999999999987644  5889882  111      11           1245555544  356789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        84 sL~~eDtAvYYCAr~   98 (124)
T d1zvya1          84 SVKSEDTAIYTCGAT   98 (124)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             cccCCcceEEEEeec
Confidence            999999999999764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.6e-06  Score=60.06  Aligned_cols=76  Identities=17%  Similarity=0.360  Sum_probs=47.8

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEEEEeCC-----EEEEEEcCCCCCCCEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLITTVES-----VSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~   78 (579)
                      ||.+..-+.. .+..|+.++|.|.+.|+ |. ..++|.+||..+...........++     .+.|.+   ..+|.+.|+
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~yt   80 (100)
T d1k5nb_           5 TPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEF---TPTEKDEYA   80 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEE---CCCSSCCEE
T ss_pred             CCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEE---CCCCCCEEE
Confidence            4555443322 24679999999999986 33 4899999999885322111111221     133444   456778999


Q ss_pred             EEEEcCC
Q psy16852         79 CKATNIG   85 (579)
Q Consensus        79 C~~~~~~   85 (579)
                      |++.+..
T Consensus        81 C~V~H~s   87 (100)
T d1k5nb_          81 CRVNHVT   87 (100)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998864

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=98.08  E-value=5.3e-06  Score=60.09  Aligned_cols=72  Identities=22%  Similarity=0.410  Sum_probs=51.6

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--C--eeEEEEC--CEE------ecC----------CCCEEEEEe--CCEEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--P--TMTWQKD--GTE------LHA----------TEHYLITTV--ESVSTLEI   66 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~--~v~W~~~--g~~------~~~----------~~~~~~~~~--~~~~~L~i   66 (579)
                      .+.....|++|++++|+|++.|...  .  .+.|+|.  |+.      +..          ..++.+..+  .+...|+|
T Consensus         5 ~esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~   84 (120)
T d1ai1h1           5 QESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQL   84 (120)
T ss_dssp             EEECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred             EeECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecce
Confidence            3566778999999999999998653  2  4789882  211      111          145555554  34678999


Q ss_pred             cCCCCCCCEEEEEEEE
Q psy16852         67 INPTKEDIGVYTCKAT   82 (579)
Q Consensus        67 ~~~~~~d~G~Y~C~~~   82 (579)
                      .+++.+|++.|.|...
T Consensus        85 ~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          85 ISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             SSCCGGGCEEEEEEEE
T ss_pred             eeeeccceeEEEEEec
Confidence            9999999999999643

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.08  E-value=1.3e-05  Score=58.19  Aligned_cols=72  Identities=15%  Similarity=0.349  Sum_probs=51.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CE--E----ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GT--E----LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~--~----~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....|++|+++.|+|.+.|....  .+.|+|.  |+  +    |.           ...++.+..+  .....|+|.
T Consensus         5 ~esG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~   84 (122)
T d1bz7b1           5 VESGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMT   84 (122)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeee
Confidence            34566779999999999999986543  5899882  21  1    11           1245555544  356789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTAvYYCAr~   99 (122)
T d1bz7b1          85 SLRSEDTAIYYCTRG   99 (122)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eecccCceEEEeecC
Confidence            999999999999754

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=9.7e-06  Score=60.36  Aligned_cols=69  Identities=14%  Similarity=0.191  Sum_probs=44.1

Q ss_pred             ceeeeCCCCEEEEEEEEeeCCC--eeEE-EEC--CE-E-e------------cCCCCEEE--EEeCCEEEEEEcCCCCCC
Q psy16852         15 PVVSHQEQPALFTCKVEGHPLP--TMTW-QKD--GT-E-L------------HATEHYLI--TTVESVSTLEIINPTKED   73 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~~~~~--~v~W-~~~--g~-~-~------------~~~~~~~~--~~~~~~~~L~i~~~~~~d   73 (579)
                      +..+.+|+.++|.|...+....  ...| ++.  +. + +            ....+++.  .......+|+|.+++.+|
T Consensus         9 p~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   88 (118)
T d1yjdc1           9 PMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQ   88 (118)
T ss_dssp             SEEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGG
T ss_pred             CcEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCccc
Confidence            3568899999999998654322  2334 441  11 0 0            11122333  333456789999999999


Q ss_pred             CEEEEEEEEc
Q psy16852         74 IGVYTCKATN   83 (579)
Q Consensus        74 ~G~Y~C~~~~   83 (579)
                      +|.|.|.+..
T Consensus        89 savYyCa~~~   98 (118)
T d1yjdc1          89 TDIYFCKIEV   98 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             CeEEEEEEec
Confidence            9999998753

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.08  E-value=8.9e-06  Score=58.60  Aligned_cols=71  Identities=18%  Similarity=0.348  Sum_probs=50.4

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|++++|+|.++|....  .+.|+|.  |+.      +.           ...++.+..+  .....|+|.
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~   84 (121)
T d2p49b1           5 VESGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMD   84 (121)
T ss_dssp             EEEECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEee
Confidence            34566789999999999999886543  5789882  211      11           1134555433  346789999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|+|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (121)
T d2p49b1          85 SLKPEDTATYYCAA   98 (121)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             eccccceeEEeeec
Confidence            99999999999975

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.07  E-value=3.2e-06  Score=60.77  Aligned_cols=72  Identities=21%  Similarity=0.404  Sum_probs=51.6

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------e---------cC--CCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------L---------HA--TEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~---------~~--~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|+++.|+|+++|....  .+.|+|  .|+.      +         ..  ..++.+..+  .....|.|.
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~   84 (118)
T d1ct8b1           5 LESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFS   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccc
Confidence            45677889999999999999986533  588887  2211      1         11  234555443  346789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|+|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          85 SLTTEDSAIYYCARY   99 (118)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeee
Confidence            999999999999653

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.07  E-value=1.7e-06  Score=62.90  Aligned_cols=72  Identities=22%  Similarity=0.381  Sum_probs=51.2

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--CeeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|++|+|+|++.|...  -.+.|||  .|+.      +.           ...++.+..+  .....|+|.
T Consensus         5 ~esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~   84 (119)
T d1qnzh_           5 QQSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFS   84 (119)
T ss_dssp             EEECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEE
T ss_pred             EeECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeec
Confidence            3566678999999999999987643  2588988  2221      11           1235555543  345779999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          85 RLTSDDSAVYYCAIH   99 (119)
T ss_dssp             EECGGGCEEEEEEEC
T ss_pred             ccCccceeEEEEEEe
Confidence            999999999999653

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.07  E-value=8.5e-06  Score=58.99  Aligned_cols=71  Identities=18%  Similarity=0.392  Sum_probs=51.0

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEEEEcC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L~i~~   68 (579)
                      +.....+++|+++.|+|++.|+...  .+.|+|.  |+.      |.           ...++.+..+  .....|+|.+
T Consensus         6 esg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~s   85 (121)
T d1ol0a_           6 ESGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNS   85 (121)
T ss_dssp             EEECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeee
Confidence            4556778999999999999876432  4789872  211      11           1235555554  3467899999


Q ss_pred             CCCCCCEEEEEEEE
Q psy16852         69 PTKEDIGVYTCKAT   82 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~   82 (579)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (121)
T d1ol0a_          86 LRAEDTAVYYCARE   99 (121)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccccceEEEEEEe
Confidence            99999999999653

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.4e-05  Score=58.12  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=50.2

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .++.++|.|.+.|+ |.. .|.|+++|..+....              ..-........|.|...              +
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~--------------~~~~~~~~~~dgtys~~--------------S   70 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV--------------LNSWTDQDSKDSTYSMS--------------S   70 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE--------------EEEECCCCTTTCCEEEE--------------E
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCe--------------EeccccEecCCCCEEEE--------------E
Confidence            35678999999985 443 899999998874321              11122233334556433              3


Q ss_pred             EEEEeecccccceeEEEEEEeCCeeEE
Q psy16852        499 VLLISKITRDQIGDVTCRAENVAGSVT  525 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~  525 (579)
                      .|.|..-+......|+|.|.+......
T Consensus        71 ~L~v~~~~W~~g~~ytC~V~H~~~~~p   97 (107)
T d1mjul2          71 TLTLTKDEYERHNSYTCEATHKTSTSP   97 (107)
T ss_dssp             EEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred             EEEECHHHhCCCCEEEEEEEECCCCCC
Confidence            487777776667789999988654443

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.07  E-value=1.3e-05  Score=57.58  Aligned_cols=72  Identities=17%  Similarity=0.343  Sum_probs=52.0

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+...-.+++|++++|+|.++|....  .+.|+|.  |+.      +.           ...++.+..+  .+...|+|.
T Consensus         5 ~esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~   84 (120)
T d1ad9b1           5 VQSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELS   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecccc
Confidence            35667789999999999999886543  5888872  211      11           1245555544  356889999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|.+.|+|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          85 SLRSEDTAFYFCARE   99 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEEEc
Confidence            999999999999753

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=98.06  E-value=3.1e-05  Score=55.47  Aligned_cols=73  Identities=16%  Similarity=0.363  Sum_probs=51.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ecC----------CCCEEEEEe--CCEEEEEEcC
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LHA----------TEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~~----------~~~~~~~~~--~~~~~L~i~~   68 (579)
                      ++.....+++|+++.|+|+++|....  .+.|+|.  |+.      +..          ..++.+..+  .....|+|.+
T Consensus         5 ~eSg~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~   84 (118)
T d1lo4h1           5 VETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSR   84 (118)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECS
T ss_pred             eeECCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeecccc
Confidence            34566779999999999999987543  5889882  211      111          134445443  3467899999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy16852         69 PTKEDIGVYTCKATN   83 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~~   83 (579)
                      ++.+|++.|.|....
T Consensus        85 l~~eDtA~YyCAr~~   99 (118)
T d1lo4h1          85 LRSEDTAIYYCARGT   99 (118)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccCCcceEEEecccC
Confidence            999999999997543

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.06  E-value=2.6e-05  Score=57.28  Aligned_cols=71  Identities=18%  Similarity=0.392  Sum_probs=50.2

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCC----eeEEEEC--CE-------------Ee-c--CCCCEEEEEe--CCEEEEEEc
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLP----TMTWQKD--GT-------------EL-H--ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~----~v~W~~~--g~-------------~~-~--~~~~~~~~~~--~~~~~L~i~   67 (579)
                      ++....+++|++++|+|.+.|....    .+.|||.  |+             .. .  ...++.+..+  .....|+|.
T Consensus         6 esG~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~   85 (126)
T d1etzb1           6 ESGPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKIT   85 (126)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEccee
Confidence            4456689999999999999875432    4679871  11             11 1  1245666554  346789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        86 ~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          86 SVDTSDTATYHCARR  100 (126)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             cccccccceEEEEEe
Confidence            999999999999753

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=8.5e-06  Score=57.55  Aligned_cols=75  Identities=9%  Similarity=0.137  Sum_probs=54.1

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVVNE  286 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~  286 (579)
                      .+|.+...+.. .+..|++++|.|.........+.|+|+|...... .........+.|.+++.+|+|.|+|.....
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~-~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-HQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE-EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            45666666554 5889999999998533344578999998643322 222344578999999999999999998654

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.05  E-value=9.3e-06  Score=59.26  Aligned_cols=72  Identities=19%  Similarity=0.332  Sum_probs=50.1

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ecC-----------CCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LHA-----------TEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~~-----------~~~~~~~~~--~~~~~L~i~   67 (579)
                      ++.....|++|+++.|+|++.|....  .+.|+|  .|+.      |..           ..++.+..+  .....|+|.
T Consensus         4 ~esG~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~   83 (126)
T d1rjca1           4 QASGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMN   83 (126)
T ss_dssp             CCBCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEEC
T ss_pred             EeECCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEe
Confidence            34556789999999999999886543  578988  2211      111           135555544  345669999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        84 ~l~~eDTAvYYCAr~   98 (126)
T d1rjca1          84 SLKPEDTAMYYCAAD   98 (126)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCcccCceeEEEee
Confidence            999999999999754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.05  E-value=4.3e-06  Score=61.61  Aligned_cols=75  Identities=16%  Similarity=0.275  Sum_probs=50.6

Q ss_pred             ccccccCceeeeCCCCEEEEEEEEeeCCCeeEEEEC--CEEe---c----C---------CCCEEEEEeCCEEEEEEcCC
Q psy16852          8 RFIEKIQPVVSHQEQPALFTCKVEGHPLPTMTWQKD--GTEL---H----A---------TEHYLITTVESVSTLEIINP   69 (579)
Q Consensus         8 ~~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~W~~~--g~~~---~----~---------~~~~~~~~~~~~~~L~i~~~   69 (579)
                      .+...|..+.+.+|++++|.|.........+.|||.  |+.+   .    .         ..++..... ....|.|..+
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~l~l~~~   81 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV-TDTELRLQVA   81 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE-ETTEEEEEEE
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc-cccEEEEecC
Confidence            356678999999999999999986555557999983  2211   0    0         112221111 1245888888


Q ss_pred             CCCCCEEEEEEEEc
Q psy16852         70 TKEDIGVYTCKATN   83 (579)
Q Consensus        70 ~~~d~G~Y~C~~~~   83 (579)
                      ..+|++.|.|....
T Consensus        82 ~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          82 NMSQGRTLYCTCSA   95 (112)
T ss_dssp             SCCSCEEEEEEEES
T ss_pred             CccCCccEEEEEec
Confidence            89999999998753

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.04  E-value=9.4e-06  Score=57.67  Aligned_cols=81  Identities=20%  Similarity=0.330  Sum_probs=46.4

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEE--EEEeC-CEEEEEEcCCCCCCCEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYL--ITTVE-SVSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~--~~~~~-~~~~L~i~~~~~~d~G~Y~C   79 (579)
                      ++|.+...|.. ....|+..+|.|.+.++ |. ..|+|++||..+..+....  ....+ .-..+....+...+...|+|
T Consensus         3 V~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC   81 (98)
T d1d5mb1           3 VYPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTC   81 (98)
T ss_dssp             BCCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEE
T ss_pred             CCCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEE
Confidence            56777665443 24457788999999885 33 4899999999875432110  11111 11222333456778889999


Q ss_pred             EEEcCCe
Q psy16852         80 KATNIGG   86 (579)
Q Consensus        80 ~~~~~~g   86 (579)
                      ++.+..-
T Consensus        82 ~V~H~sl   88 (98)
T d1d5mb1          82 QVEHPSV   88 (98)
T ss_dssp             EEECTTC
T ss_pred             EEEECCC
Confidence            9998643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.04  E-value=1.4e-05  Score=59.53  Aligned_cols=93  Identities=16%  Similarity=0.274  Sum_probs=52.6

Q ss_pred             ecCCCceeeecCCCeEEEEEEEeeC--CCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecce
Q psy16852        411 TKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTE  488 (579)
Q Consensus       411 ~~~~~~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~  488 (579)
                      ..++..++..+|++++|.|.++|..  ...+.|++..  ........+.+.. ++..    ..-.....|+|        
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~--pg~~~~~l~~~~~-~~~~----~~~~~~~~~rf--------   69 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRER--PGEVIQFLVSISY-DGTV----RKESGIPSGKF--------   69 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEEC--TTSCCEEEEEECS-SSCE----EECTTCCTTSE--------
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEEC--CCCCceEeeeccc-cccc----cccccccccee--------
Confidence            3444456688899999999998754  3368999841  0011111111110 0110    00001112233        


Q ss_pred             eeeee--eCCeeEEEEeecccccceeEEEEEEe
Q psy16852        489 TKIMT--DGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       489 ~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                       .+..  +.....|.|.+++.+|+|.|.|.+..
T Consensus        70 -~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          70 -EVDRIPETSTSTLTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             -EEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             -EEeeeccccceeecccccccccCcEEEEeeeC
Confidence             3333  23457799999999999999998753

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.04  E-value=1.4e-05  Score=58.30  Aligned_cols=72  Identities=17%  Similarity=0.362  Sum_probs=51.6

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------ec-----------CCCCEEEEEeC--CEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------LH-----------ATEHYLITTVE--SVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~~-----------~~~~~~~~~~~--~~~~L~i~   67 (579)
                      .+.....+++|+++.|+|++.|....  .+.|+|.  |+.      |.           ...++.+..+.  ....|+|.
T Consensus         5 ~eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~   84 (135)
T d1ieha_           5 QASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMN   84 (135)
T ss_dssp             EEECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEE
T ss_pred             eeECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEe
Confidence            45667789999999999999986543  5889872  211      11           12455555443  35789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|+|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (135)
T d1ieha_          85 SLKSEDTAVYYCAKY   99 (135)
T ss_dssp             SCCSSSCEEEEEEEB
T ss_pred             eeCcccceeeEEEEe
Confidence            999999999999654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.04  E-value=2.1e-05  Score=55.99  Aligned_cols=32  Identities=16%  Similarity=0.350  Sum_probs=25.9

Q ss_pred             eecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCC
Q psy16852        419 AEAQSPATLKATVTGR-PTP-SICWYRGKEEILP  450 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~  450 (579)
                      +..|+..+|.|.+.|+ |.. .|.|++||..+..
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~   49 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTE   49 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCC
Confidence            4567889999999986 544 8999999998753

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.04  E-value=1.2e-05  Score=59.82  Aligned_cols=76  Identities=22%  Similarity=0.333  Sum_probs=53.5

Q ss_pred             ecCCCceEEccCCcEEEEEEEEeec--CCeEEEEEC--CEE---cc---------CCCCceEEEcCCCCeEEEEECcCCC
Q psy16852        109 TKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRG--KEE---IL---------PDNGHTMEFNPTTGECVLSISEATP  172 (579)
Q Consensus       109 ~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~l~i~~~~~  172 (579)
                      ...+..+.+.+|++++|.|.+.+..  ...+.||+.  ++.   +.         ...++....+.......|.|.+++.
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~   84 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE   84 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccc
Confidence            3445667788999999999986533  357999983  111   10         1123444555555678999999999


Q ss_pred             CCCeEEEEEEEc
Q psy16852        173 QDEAVYSVKAVN  184 (579)
Q Consensus       173 ~d~G~Y~C~~~~  184 (579)
                      +|+|.|.|....
T Consensus        85 ~Dsa~YyCA~~~   96 (120)
T d1hxma1          85 RDEGSYYCACDT   96 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCCceeecCccc
Confidence            999999998754

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.04  E-value=9.5e-06  Score=58.55  Aligned_cols=71  Identities=20%  Similarity=0.370  Sum_probs=51.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|+++.|+|+++|....  .+.|+|  .|+.      |.           ...++.+..+  .+...|+|.
T Consensus         5 ~esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~   84 (124)
T d1yedb1           5 QQSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLS   84 (124)
T ss_dssp             EECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEE
T ss_pred             EeeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccc
Confidence            45677889999999999999886543  588988  1211      11           1245555554  456789999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|+|..
T Consensus        85 sL~~eDTAvYYCAR   98 (124)
T d1yedb1          85 SLKSEDSAVYFCTR   98 (124)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEecc
Confidence            99999999999964

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.03  E-value=2.3e-05  Score=55.38  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=26.4

Q ss_pred             eecCCCeEEEEEEEee-CC-CeEEEeeCCEEcCCC
Q psy16852        419 AEAQSPATLKATVTGR-PT-PSICWYRGKEEILPD  451 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-p~-~~v~W~~~~~~l~~~  451 (579)
                      ...++.++|.|.+.|+ |. ..|+|++||..+..+
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~   48 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHS   48 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCC
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCC
Confidence            4567889999999996 43 389999999988544

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.1e-05  Score=55.43  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=24.2

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcC
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEIL  449 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~  449 (579)
                      .|+.++|.|.+.|+ |.. .|.|++||..+.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~   44 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQE   44 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECC
Confidence            47899999999995 543 899999998874

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.03  E-value=2.2e-05  Score=57.04  Aligned_cols=72  Identities=17%  Similarity=0.379  Sum_probs=51.6

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CE--E----ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GT--E----LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~--~----~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|+++.|+|++.|....  .+.|+|.  |+  +    +.           ...++.+..+  .+...|+|.
T Consensus         5 ~eSg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~   84 (126)
T d1dfbh1           5 VESGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMN   84 (126)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeee
Confidence            34566779999999999999886543  5889882  21  1    11           1245555554  346789999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtavYYCAr~   99 (126)
T d1dfbh1          85 SLRAEDMALYYCVKG   99 (126)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeccCcceEEEEEec
Confidence            999999999999654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=3.4e-05  Score=54.06  Aligned_cols=30  Identities=20%  Similarity=0.410  Sum_probs=24.7

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCC
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEILP  450 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~  450 (579)
                      .++.++|.|.+.|+ |.. .+.|++||..+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~   45 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDA   45 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECcc
Confidence            46778999999995 655 9999999998853

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.1e-05  Score=58.02  Aligned_cols=83  Identities=19%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCC--CeeEEEECCEEecCCCCEE-EEEe-CC----EEEEEEcCCCCCCCEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQKDGTELHATEHYL-ITTV-ES----VSTLEIINPTKEDIGV   76 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~g~~~~~~~~~~-~~~~-~~----~~~L~i~~~~~~d~G~   76 (579)
                      .+|.+...|....-..++.++|.|.+.++-+  ..|+|++||..+..+.... .... ++    .+.|.|..-.......
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            4566555433322234678999999988633  4899999999875432110 0111 11    2556666555555779


Q ss_pred             EEEEEEcCCee
Q psy16852         77 YTCKATNIGGV   87 (579)
Q Consensus        77 Y~C~~~~~~g~   87 (579)
                      |+|+|.+....
T Consensus        84 ytC~V~H~~~~   94 (102)
T d1q0xl2          84 YSCQVTHEGHS   94 (102)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCcc
Confidence            99999987543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=7.4e-06  Score=59.82  Aligned_cols=90  Identities=18%  Similarity=0.279  Sum_probs=55.2

Q ss_pred             CCeeec-CCCceeeecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        407 APKFTK-PLKPVIAEAQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       407 ~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      +|.+.. ++....+..++.++|.|.+.|+ |.. .|.|+++|..+..+.....           ..........|.|...
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~-----------~~~~~~~~~~gtys~~   72 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTW-----------ASRQEPSQGTTTFAVT   72 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEEC-----------CCEECSCSSSCCEEEE
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcc-----------cceecccCCCCcEEEE
Confidence            444442 3333345568899999999985 444 8999999998854322110           0011112234445333


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                                    +.|.|..-.......|+|.|.+..
T Consensus        73 --------------S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          73 --------------SILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             --------------EEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             --------------EEEEEcHHHhCCCCEEEEEEEeCC
Confidence                          347777777666789999998764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.02  E-value=2.5e-05  Score=55.37  Aligned_cols=72  Identities=15%  Similarity=0.193  Sum_probs=41.8

Q ss_pred             ecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        420 EAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      ..++..+|.|.+.|+-++  .|+|++||..+..+..               .....+...|.|.                
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~---------------~~~~~~~~dgtf~----------------   64 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVV---------------STGLIQNGDWTFQ----------------   64 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEE---------------ECCCEECSSSCEE----------------
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCE---------------ECeEEeCCCcEEE----------------
Confidence            346777999999985443  8999999988744311               1112223333442                


Q ss_pred             eEEEEeecccccceeEEEEEEeCCee
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                       .+....+..++...|+|.+.+..-.
T Consensus        65 -~~s~l~~~~~~~~~ytC~V~H~sl~   89 (98)
T d1d5mb1          65 -TLVMLETVPRSGEVYTCQVEHPSVT   89 (98)
T ss_dssp             -EEEEEECCCCTTCEEEEEEECTTCS
T ss_pred             -EEEEeeEcCCCCCEEEEEEEECCCC
Confidence             2333345566778899999876443

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.02  E-value=2.5e-05  Score=56.57  Aligned_cols=71  Identities=17%  Similarity=0.377  Sum_probs=51.3

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCC--CeeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEEEEcC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPL--PTMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L~i~~   68 (579)
                      +...-.+++|++++|+|++.|...  -.+.|+|.  |+.      +.           ...++.+..+  .....|+|.+
T Consensus         6 eSG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~s   85 (125)
T d1op3h1           6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK   85 (125)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeec
Confidence            455677999999999999987643  25889881  211      11           1245665554  3567899999


Q ss_pred             CCCCCCEEEEEEEE
Q psy16852         69 PTKEDIGVYTCKAT   82 (579)
Q Consensus        69 ~~~~d~G~Y~C~~~   82 (579)
                      ++.+|++.|+|...
T Consensus        86 L~~eDTAvYYCAr~   99 (125)
T d1op3h1          86 MRVEDTAIYYCARK   99 (125)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCccceeEeEeec
Confidence            99999999999754

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3.9e-06  Score=60.79  Aligned_cols=81  Identities=19%  Similarity=0.330  Sum_probs=50.6

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEee-C-CCeeEEEECCEEecCCCCEE--EEEe-CC----EEEEEEcCCCCCCCEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGH-P-LPTMTWQKDGTELHATEHYL--ITTV-ES----VSTLEIINPTKEDIGV   76 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~-~~~v~W~~~g~~~~~~~~~~--~~~~-~~----~~~L~i~~~~~~d~G~   76 (579)
                      +|.+..-|.+.....++.++|.|.+.+. | ...|.|++||..+.......  .... ++    .+.|.|..-...+...
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~   83 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDE   83 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGG
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCE
Confidence            4555443334444567889999999885 3 25899999999875432111  0111 11    2567776555555668


Q ss_pred             EEEEEEcCCe
Q psy16852         77 YTCKATNIGG   86 (579)
Q Consensus        77 Y~C~~~~~~g   86 (579)
                      |+|.+.+...
T Consensus        84 ytC~V~H~~l   93 (105)
T d1fp5a2          84 FICRAVHEAA   93 (105)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEECCC
Confidence            9999998654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.00  E-value=1.5e-05  Score=57.52  Aligned_cols=72  Identities=17%  Similarity=0.361  Sum_probs=51.5

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEEC--CEE------e-----------c--CCCCEEEEEe--CCEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQKD--GTE------L-----------H--ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~~--g~~------~-----------~--~~~~~~~~~~--~~~~~L~   65 (579)
                      .+.....|++|+++.|+|.+.|....  .+.|+|.  |+.      +           .  ...++.+..+  .+...|+
T Consensus         5 ~esg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~   84 (122)
T d1q9rb1           5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQ   84 (122)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccc
Confidence            34566779999999999999886543  5889872  211      1           1  1135555544  3467899


Q ss_pred             EcCCCCCCCEEEEEEEE
Q psy16852         66 IINPTKEDIGVYTCKAT   82 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~   82 (579)
                      |.+++.+|++.|.|...
T Consensus        85 ~~sL~~eDTAvYYCar~  101 (122)
T d1q9rb1          85 MNTLRAEDSATYYCARD  101 (122)
T ss_dssp             ECSCCGGGCEEEEEEEC
T ss_pred             eeeeccCcceEEEEEec
Confidence            99999999999999763

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.7e-06  Score=63.32  Aligned_cols=74  Identities=18%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             CCceEEccCCcEEEEEEEEeec-------CCeEEEEECCEEc---------------cCC--CCceEEEcCCCCeEEEEE
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP-------TPSICWYRGKEEI---------------LPD--NGHTMEFNPTTGECVLSI  167 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p-------~~~i~W~~~~~~~---------------~~~--~~~~~~~~~~~~~~~l~i  167 (579)
                      +..+.+.+|+.++|+|.++...       ...+.|++....-               ...  .+..+..+...+..+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            4567889999999999985211       1367898853221               011  122333333456778999


Q ss_pred             CcCCCCCCeEEEEEEEcC
Q psy16852        168 SEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~~  185 (579)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999754

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.00  E-value=5.4e-06  Score=60.15  Aligned_cols=71  Identities=15%  Similarity=0.333  Sum_probs=51.2

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCE--E----ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGT--E----LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~--~----~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .++....+++|+++.|+|++.|....  .+.|+|  .|+  +    +.           ...++.+..+  .+...|+|.
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~   84 (124)
T d2b1hh1           5 EQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWS   84 (124)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEES
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeee
Confidence            45777889999999999999986543  478988  121  1    11           1245545444  346789999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|+|..
T Consensus        85 ~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          85 SLKPSDTALYYCAR   98 (124)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccccceEEEEee
Confidence            99999999999954

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.00  E-value=1.9e-05  Score=56.10  Aligned_cols=76  Identities=12%  Similarity=0.041  Sum_probs=53.8

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--eEEeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      .+|.+...+.. .+..|++|+|.|... .+...+.|+|+|.......  .........+.|..+...|+|.|+|......
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~   82 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHD   82 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCC
Confidence            46666665544 578899999999854 4566899999885432211  2234555677888888999999999876544

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.99  E-value=1.1e-05  Score=59.30  Aligned_cols=84  Identities=20%  Similarity=0.299  Sum_probs=50.7

Q ss_pred             CceeeecCCCeEEEEEEEeeCC-CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPT-PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ..+.+.+|++++|.|...+... ..+.|++..    ++....           +.+......      ......+..+..
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~----pg~~~~-----------~i~~~~~~~------~~~~~~~~~~~~   64 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQL----PSQGPE-----------YVIHGLTSN------VNNRMASLAIAE   64 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEEC----TTSCCE-----------EEEEESSSS------EECSSEEEEECT
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEEC----CCCCcc-----------eeeeeccee------ccccccceeecc
Confidence            3456889999999999865443 458999942    111111           111111100      001112233445


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      +.....|+|.+++.+|+|.|.|.+..
T Consensus        65 ~~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          65 DRKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             TSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             cCCeeEEEEeecccccceeEeeeEec
Confidence            56667899999999999999997653

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.99  E-value=3.1e-05  Score=56.68  Aligned_cols=73  Identities=16%  Similarity=0.353  Sum_probs=52.7

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------e-----------cCCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------L-----------HATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~-----------~~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|+++.|.|+++|....  .+.|+|  .|+.      +           ....++.+..+  .....|+|.
T Consensus         4 ~esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~   83 (133)
T d1rzfh1           4 VQSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLR   83 (133)
T ss_dssp             EECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeec
Confidence            45667789999999999999876543  488887  2211      1           11356666655  346789999


Q ss_pred             CCCCCCCEEEEEEEEc
Q psy16852         68 NPTKEDIGVYTCKATN   83 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~   83 (579)
                      +++.+|++.|.|....
T Consensus        84 ~L~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          84 GLRSDDTAVYYCASNS   99 (133)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             cCCCCCCEEEEeeecc
Confidence            9999999999996543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.4e-05  Score=56.81  Aligned_cols=77  Identities=14%  Similarity=0.198  Sum_probs=49.8

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .++.++|.|.+.|+ |.. .|.|++||..+.....              .-........|.|...              +
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~--------------~~~~~~~~~dgtys~~--------------S   70 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ--------------ESVTEQDSKDSTYSLS--------------S   70 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE--------------EEECCCCTTTCCEEEE--------------E
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEE--------------EecccccCCCCcEEEE--------------E
Confidence            46789999999985 543 8999999987743311              1111222334556433              3


Q ss_pred             EEEEeecccccceeEEEEEEeCCeeEE
Q psy16852        499 VLLISKITRDQIGDVTCRAENVAGSVT  525 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~  525 (579)
                      .|.|..-+.+....|+|.+.+......
T Consensus        71 ~L~v~~~~W~~~~~ytC~V~H~~~~~p   97 (107)
T d1c5cl2          71 TLTLSKADYEKHKVYACEVTHQGLSSP   97 (107)
T ss_dssp             EEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             EEEECHHHhCCCCEEEEEEEECCCCCc
Confidence            488877766666689999998754443

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.99  E-value=1.1e-05  Score=58.87  Aligned_cols=72  Identities=21%  Similarity=0.367  Sum_probs=51.8

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--CeeEEEE--CCEE------ec-----------CCCCEEEEEeC--CEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQK--DGTE------LH-----------ATEHYLITTVE--SVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~--~g~~------~~-----------~~~~~~~~~~~--~~~~L~i~   67 (579)
                      .++....+++|+++.|+|+++|...  -.+.|+|  .|+.      +.           ...++.+..+.  ....|+|.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~   84 (130)
T d1rzga1           5 VQSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELS   84 (130)
T ss_dssp             EECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeee
Confidence            4577788999999999999987643  2588987  2211      11           12355555443  46779999


Q ss_pred             CCCCCCCEEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKAT   82 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~   82 (579)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          85 SLRSEDTAVFYCASP   99 (130)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecCCCccEEEEEEEe
Confidence            999999999999753

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=6.2e-06  Score=60.96  Aligned_cols=86  Identities=9%  Similarity=0.059  Sum_probs=48.1

Q ss_pred             ceeeecCCCeEEEEEEEe--eCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEcc-ccCCCceeEEEEeecceeeee
Q psy16852        416 PVIAEAQSPATLKATVTG--RPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISE-ATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g--~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      ...+.+|++++|.|...+  .....+.|++..    ++....+          +.... ......+     ....++.+.
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~----~~~~~~~----------l~~~~~~~~~~~~-----~~~~R~~~~   68 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIR----DGEMPKT----------LACTERPSKNSHP-----VQVGRIILE   68 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEEC----TTSCCEE----------EEECCSSCCSSCC-----EEETTEEEE
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECC----CCCCCEE----------EEecCCCCceEcc-----eECCeEEEE
Confidence            356789999999998764  344578899832    1111010          11110 0011000     111222232


Q ss_pred             e--eCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        493 T--DGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       493 ~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .  ......|+|.+++.+|+|.|.|.+...
T Consensus        69 ~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          69 DYHDHGLLRVRMVNLQVEDSGLYQCVIYQP   98 (113)
T ss_dssp             EETTTTEEEEEECSCCGGGCEEEEEEECCT
T ss_pred             EECCCCEEEEEEccCCcccCceEEEEEECC
Confidence            2  334467999999999999999987544

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.98  E-value=1.2e-05  Score=59.29  Aligned_cols=77  Identities=14%  Similarity=0.186  Sum_probs=50.4

Q ss_pred             ecCCCceEEccCCcEEEEEEEEeecCCeEEEEECC--EE---ccC-C------CCce-EEEcCCCCeEEEEECcCCCCCC
Q psy16852        109 TKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGK--EE---ILP-D------NGHT-MEFNPTTGECVLSISEATPQDE  175 (579)
Q Consensus       109 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~---~~~-~------~~~~-~~~~~~~~~~~l~i~~~~~~d~  175 (579)
                      ...+..+.+.+|+.++|.|.... ....+.||+..  ..   +.. .      .... ...........|.|.+++.+|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            34456778889999999999754 34579999832  11   100 0      0111 1111223457899999999999


Q ss_pred             eEEEEEEEcCC
Q psy16852        176 AVYSVKAVNTF  186 (579)
Q Consensus       176 G~Y~C~~~~~~  186 (579)
                      |.|.|.+....
T Consensus        84 a~YyCa~~~~~   94 (113)
T d1h5ba_          84 GTYFCAAEASS   94 (113)
T ss_dssp             EEEEEEEECSS
T ss_pred             EEEEEEecCCC
Confidence            99999886543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.97  E-value=1.1e-05  Score=59.31  Aligned_cols=73  Identities=16%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             CCceEEccCCcEEEEEEEEeec--CCeEEEEECC--EEc------------cCCCCceEEEcCCCCeEEEEECcCCCCCC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--EEI------------LPDNGHTMEFNPTTGECVLSISEATPQDE  175 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  175 (579)
                      +..+.+.+|++++|.|..++..  ...+.||+..  +.+            ....+.....+.......|.|.+++.+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            3467889999999999986432  2458999842  110            11234555556666788999999999999


Q ss_pred             eEEEEEEEc
Q psy16852        176 AVYSVKAVN  184 (579)
Q Consensus       176 G~Y~C~~~~  184 (579)
                      +.|.|....
T Consensus        87 a~YyCA~~~   95 (111)
T d1cd0a_          87 ADYYCQSYD   95 (111)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEeecc
Confidence            999997653

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=8.6e-06  Score=57.06  Aligned_cols=71  Identities=17%  Similarity=0.143  Sum_probs=51.4

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEE
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRV  283 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a  283 (579)
                      .+|.+...+.. .+..|++|+|.|... .....+.|+|+|...... .........+.|.+++..|+|.|+|..
T Consensus         3 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           3 DTPTLSVHPGP-EVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQ-RGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CCCEEEEESCS-EEETTCEEEEEEECS-SSCSEEEEEEESSSCEEE-EEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCCEEEEeCCC-cccCCCcEEEEECCC-CCCCEEEEEECCCcccee-ecCCCceeEEEecccChhcCceEEEEe
Confidence            45666665554 477899999999853 445589999987532221 222346678999999999999999974

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.97  E-value=9e-06  Score=60.00  Aligned_cols=88  Identities=14%  Similarity=0.132  Sum_probs=50.8

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee-eee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET-KIM  492 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~-~~~  492 (579)
                      |....+.+|++++|.|...+ ....+.|++..    ++           ....+.+....   .+...-......+ ...
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~----pg-----------~~~~~l~~~~~---~~~~~~~~~~~~~~~~~   66 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQT----PG-----------QGLQFLFEYFN---ETQRNKGNFPGRFSGRQ   66 (113)
T ss_dssp             CSEEEEETTCCEEEEEECST-TCCEEEEEEEE----TT-----------TEEEEEEEEET---TEEEEECSCCTTEEEEE
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEEEEee----cc-----------cceEeeeeecc---cccccccccccceeecc
Confidence            34456889999999998653 33578999831    11           11112121111   1111111111112 223


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .+.....|+|.+++.+|+|.|.|.+...
T Consensus        67 ~~~~~~~L~I~~~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          67 FSNSRSEMNVSTLELGDSALYLCASSLA   94 (113)
T ss_dssp             CTTSCEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CcCCeeEEEECCCCcccceeeeeeeeCC
Confidence            3455678999999999999999988643

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.97  E-value=1.7e-05  Score=58.76  Aligned_cols=76  Identities=22%  Similarity=0.340  Sum_probs=52.0

Q ss_pred             ecCCCceEEccCCcEEEEEEEEeec--CCeEEEEECC--E---Ecc-------------CCCCceEEEcCCCCeEEEEEC
Q psy16852        109 TKPLKPVIAEAQSPATLKATVTGRP--TPSICWYRGK--E---EIL-------------PDNGHTMEFNPTTGECVLSIS  168 (579)
Q Consensus       109 ~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~---~~~-------------~~~~~~~~~~~~~~~~~l~i~  168 (579)
                      ..++..+...+|++++|.|.+.+..  ...+.||+..  +   .+.             ...+.....+.......|.|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            3344567778899999999976432  3578999832  1   110             112233444455667899999


Q ss_pred             cCCCCCCeEEEEEEEc
Q psy16852        169 EATPQDEAVYSVKAVN  184 (579)
Q Consensus       169 ~~~~~d~G~Y~C~~~~  184 (579)
                      +++.+|+|.|.|....
T Consensus        85 ~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             SCCGGGCSEEEEEECC
T ss_pred             ccccccceeEEEEEcC
Confidence            9999999999997654

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.97  E-value=2.7e-05  Score=56.80  Aligned_cols=73  Identities=19%  Similarity=0.359  Sum_probs=51.9

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--CeeEEEEC--CEE------ec-----------CCCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQKD--GTE------LH-----------ATEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|++++|.|++.|...  -.+.|+|.  |+.      +.           ...++.+..+  .....|+|.
T Consensus         5 ~esG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~   84 (127)
T d2fb4h1           5 VQSGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMD   84 (127)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeee
Confidence            3456677999999999999988643  35889881  111      11           1245555554  346789999


Q ss_pred             CCCCCCCEEEEEEEEc
Q psy16852         68 NPTKEDIGVYTCKATN   83 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~~~   83 (579)
                      +++.+|++.|+|....
T Consensus        85 ~L~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          85 SLRPEDTGVYFCARDG  100 (127)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             eeeecceeEEEEEEec
Confidence            9999999999997543

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3.6e-05  Score=55.40  Aligned_cols=75  Identities=20%  Similarity=0.221  Sum_probs=48.5

Q ss_pred             ecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        420 EAQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      ..+..++|.|.+.|+ |.. .|+|+++|..+........                .....|.|+.              .
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~----------------~~~~~~~y~~--------------~   68 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAS----------------TTQEGELAST--------------Q   68 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEE----------------EEEETTEEEE--------------E
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeee----------------EeCCCCeEEE--------------E
Confidence            345578999999985 544 8999999998753321110                0112234432              3


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeE
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                      +.|.|..-+......|+|.|.+.....
T Consensus        69 S~L~v~~~~w~~~~~ytC~V~H~~~t~   95 (104)
T d1o0va1          69 SELTLSQKHWLSDRTYTCQVTYQGHTF   95 (104)
T ss_dssp             EEEEEEHHHHHTTCCEEEEEEETTEEE
T ss_pred             EEEEECHHHcCCCCEEEEEEEECCEeE
Confidence            448887777666778999999985443

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4e-06  Score=61.18  Aligned_cols=72  Identities=22%  Similarity=0.270  Sum_probs=48.8

Q ss_pred             eEEccCCcEEEEEEEEeecC----CeEEEEECCEEccCC----------CCceEEEcCCCCeEEEEECcCCCCCCeEEEE
Q psy16852        115 VIAEAQSPATLKATVTGRPT----PSICWYRGKEEILPD----------NGHTMEFNPTTGECVLSISEATPQDEAVYSV  180 (579)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~p~----~~i~W~~~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  180 (579)
                      +....|+.++|.|.+.....    ..+.|.+++..+..-          ...+.... ..+..+|.|.+++.+|+|.|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeec-cCCcEEEEECcCChHHCeEEEE
Confidence            56778999999998753221    478888877654211          01122222 2345689999999999999999


Q ss_pred             EEEcCCc
Q psy16852        181 KAVNTFG  187 (579)
Q Consensus       181 ~~~~~~~  187 (579)
                      .+.+..+
T Consensus        83 ~V~~~~~   89 (105)
T d1dr9a1          83 VVLKYEK   89 (105)
T ss_dssp             EEEECCT
T ss_pred             EEEeCCC
Confidence            9976543

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.96  E-value=1.1e-05  Score=59.40  Aligned_cols=90  Identities=12%  Similarity=0.164  Sum_probs=51.3

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      .+....+.+|++++|.|... .....+.|++..    ++....           |.+......  ..+.-...+......
T Consensus         6 sP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~----pg~~~~-----------~l~~~~~~~--~~~~~~~~~~~~~~~   67 (113)
T d1j8he1           6 SSRYLVKRTGEKVFLECVQD-MDHENMFWYRQD----PGLGLR-----------LIYFSYDVK--MKEKGDIPEGYSVSR   67 (113)
T ss_dssp             SCSEEEEETTCCEEECEEES-SCCSEEEEEEEE----TTTEEE-----------EEEEESSTT--CCEECSCCTTEEEEC
T ss_pred             cCCEEEECCCCCEEEEEEEc-CCccEEEeEEec----CCCCcc-----------eeeeeeeee--eeecccccccceEEe
Confidence            34455688999999999864 334578999831    111111           111111000  001000111112223


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEeC
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      .+.....|+|.+++.+|+|.|.|.+...
T Consensus        68 ~~~~~~~L~i~~~~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          68 EKKERFSLILESASTNQTSMYLCASSST   95 (113)
T ss_dssp             SSTTBCEEEESSCCGGGCEEEEEEEECT
T ss_pred             ccCcEeeeEeccCccCCcccEEeeEccC
Confidence            3456678999999999999999988753

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1e-05  Score=59.53  Aligned_cols=39  Identities=18%  Similarity=0.265  Sum_probs=27.9

Q ss_pred             eCCeeEEEEeecccccceeEEEEEEeC--Cee---EEEEEEEEE
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAENV--AGS---VTCTATLSL  532 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~--~g~---~~~~~~l~v  532 (579)
                      ......|+|.+++.+|+|.|.|.+...  .|.   ....+.|.|
T Consensus        65 ~~~~~sL~I~~v~~~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V  108 (110)
T d1ncna_          65 DSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSV  108 (110)
T ss_dssp             ETTTTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             cCCeEEEEECCCChhHCEEEEEEEEecCCCceEEEEcceEEEEE
Confidence            344567999999999999999998643  333   234555555

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.95  E-value=5.8e-06  Score=60.75  Aligned_cols=88  Identities=15%  Similarity=0.213  Sum_probs=48.4

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee-e
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI-M  492 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~-~  492 (579)
                      |....+.+|++++|.|...+ ....+.|++..  ........+.+  .... ...   ....         ....+.. .
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~--~g~~~~~l~~~--~~~~-~~~---~~~~---------~~~~f~~~~   67 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRV--MGKEIKFLLHF--VKES-KQD---ESGM---------PNNRFLAER   67 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCSEEEEEEEE--TTSCEEEEEEE--ETTE-EEE---CTTC---------CSTTEEEEC
T ss_pred             CCEEEECCCCCEEEEEEECC-CCceEEEEEEc--cCCcceeccee--cccC-ccc---ccCC---------CCccEEEEc
Confidence            44566899999999998653 34579999841  00011111111  0000 000   0000         0111122 2


Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .++..+.|+|.++..+|+|.|.|.+..
T Consensus        68 ~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          68 TGGTYSTLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             TTSSSEEEEESSCCGGGCEEEEEEEES
T ss_pred             CCCCEEEEEECCcccCCCceEEEeeeC
Confidence            234567899999999999999998764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.4e-05  Score=56.07  Aligned_cols=74  Identities=22%  Similarity=0.312  Sum_probs=47.0

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCC--CCEEEEEeCC-----EEEEEEcCCCCCCCE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHAT--EHYLITTVES-----VSTLEIINPTKEDIG   75 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~--~~~~~~~~~~-----~~~L~i~~~~~~d~G   75 (579)
                      +||.+..    .....++.++|.|.+.|+ |. ..++|++||+.+..+  .......+++     ...|.+   ...|..
T Consensus         3 vpP~V~v----~~~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v---~~~~~~   75 (94)
T d1de4a1           3 VPPLVKV----THHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAV---PPGEEQ   75 (94)
T ss_dssp             BCCEEEE----EEEECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEE---CTTCGG
T ss_pred             CCCEEEE----EEcCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEE---CCCCCC
Confidence            5676644    222357889999999985 54 489999999998533  1112222222     133444   445667


Q ss_pred             EEEEEEEcCC
Q psy16852         76 VYTCKATNIG   85 (579)
Q Consensus        76 ~Y~C~~~~~~   85 (579)
                      .|+|++.+..
T Consensus        76 ~ytC~V~H~s   85 (94)
T d1de4a1          76 RYTCQVEHPG   85 (94)
T ss_dssp             GEEEEEECTT
T ss_pred             EEEEEEEeCC
Confidence            8999999864

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=2e-05  Score=58.09  Aligned_cols=74  Identities=15%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             CCCceEEccCCcEEEEEEEEeecCCeEEEEECCE--E---cc-----------CCCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852        111 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE--E---IL-----------PDNGHTMEFNPTTGECVLSISEATPQD  174 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~---~~-----------~~~~~~~~~~~~~~~~~l~i~~~~~~d  174 (579)
                      .+..+.+.+|++++|.|..+ .....+.||+...  .   +.           .................|.|.++..+|
T Consensus         5 sP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   83 (114)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence            45567788999999999975 3446899998321  1   00           001111222223445689999999999


Q ss_pred             CeEEEEEEEcC
Q psy16852        175 EAVYSVKAVNT  185 (579)
Q Consensus       175 ~G~Y~C~~~~~  185 (579)
                      +|.|.|.+...
T Consensus        84 Sa~YyCa~~~~   94 (114)
T d1ogae1          84 TAFYLCASSSR   94 (114)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeEEEeeccC
Confidence            99999977643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.92  E-value=3e-05  Score=56.89  Aligned_cols=71  Identities=18%  Similarity=0.413  Sum_probs=51.0

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCC--CeeEEEEC--CEE---e-----------------c--CCCCEEEEEe--CCEEE
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPL--PTMTWQKD--GTE---L-----------------H--ATEHYLITTV--ESVST   63 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~--g~~---~-----------------~--~~~~~~~~~~--~~~~~   63 (579)
                      +...-.+++|+++.|+|+++|...  -.+.|+|.  |+.   +                 .  ...++.+..+  .....
T Consensus         6 esG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~   85 (127)
T d1i3ua_           6 ESGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVN   85 (127)
T ss_dssp             EESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEE
T ss_pred             eECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEE
Confidence            456677899999999999987643  35889972  111   1                 0  1135555443  35678


Q ss_pred             EEEcCCCCCCCEEEEEEEE
Q psy16852         64 LEIINPTKEDIGVYTCKAT   82 (579)
Q Consensus        64 L~i~~~~~~d~G~Y~C~~~   82 (579)
                      |+|.+++.+|++.|.|...
T Consensus        86 L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          86 LQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             EEECSCCGGGCEEEEEEEE
T ss_pred             EeeecccccceeEEEEEEE
Confidence            9999999999999999865

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.92  E-value=8.9e-06  Score=57.32  Aligned_cols=65  Identities=20%  Similarity=0.449  Sum_probs=44.6

Q ss_pred             eeeCCCCEEEEEEEEeeCC--CeeEEEEC--CEE------e--------cC--CCCEEEEEe--CCEEEEEEcCCCCCCC
Q psy16852         17 VSHQEQPALFTCKVEGHPL--PTMTWQKD--GTE------L--------HA--TEHYLITTV--ESVSTLEIINPTKEDI   74 (579)
Q Consensus        17 ~v~~G~~~~l~C~~~~~~~--~~v~W~~~--g~~------~--------~~--~~~~~~~~~--~~~~~L~i~~~~~~d~   74 (579)
                      .|++|++++|.|++.|...  -.+.|+|.  |+.      +        ..  ..++.+..+  .....|+|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            4789999999999987533  35789882  111      1        11  235555543  3456899999999999


Q ss_pred             EEEEEEE
Q psy16852         75 GVYTCKA   81 (579)
Q Consensus        75 G~Y~C~~   81 (579)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.92  E-value=1.2e-05  Score=58.39  Aligned_cols=86  Identities=9%  Similarity=0.075  Sum_probs=55.1

Q ss_pred             CCcCCCCccccc-cCceeeeCCCCEEEEEEEEeeCC--CeeEEEECCEEecCCCCEEEE-EeCC----EEEEEEcCCCCC
Q psy16852          1 MAEVLAPRFIEK-IQPVVSHQEQPALFTCKVEGHPL--PTMTWQKDGTELHATEHYLIT-TVES----VSTLEIINPTKE   72 (579)
Q Consensus         1 ~~~~~~p~~~~~-p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~g~~~~~~~~~~~~-~~~~----~~~L~i~~~~~~   72 (579)
                      |+...+|.+..- |....+..+..++|.|.+.++-+  ..|.|++||..+......... ..++    .+.|+|..-.. 
T Consensus         3 ~~~~~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w-   81 (107)
T d1hxmb2           3 LDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-   81 (107)
T ss_dssp             CCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-
T ss_pred             CCCCCCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC-
Confidence            567788887775 44456778899999999988643  379999999876543211111 1111    24566654332 


Q ss_pred             CCEEEEEEEEcCCeee
Q psy16852         73 DIGVYTCKATNIGGVA   88 (579)
Q Consensus        73 d~G~Y~C~~~~~~g~~   88 (579)
                       ...|+|.+.+.....
T Consensus        82 -~~~ytC~V~H~s~~~   96 (107)
T d1hxmb2          82 -DKEHRCIVRHENNKN   96 (107)
T ss_dssp             -GSCEEEEEEETTSGG
T ss_pred             -CCeEEEEEEECCCCC
Confidence             237999999875433

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.92  E-value=2.7e-05  Score=57.06  Aligned_cols=72  Identities=17%  Similarity=0.358  Sum_probs=51.4

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-------------CCCCEEEEEe--CCEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-------------ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-------------~~~~~~~~~~--~~~~~L~   65 (579)
                      .+.....+++|++++|.|++.|....  .+.|+|  .|+.      |.             ...++.+..+  .+...|+
T Consensus         5 ~esG~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq   84 (131)
T d3c2ah1           5 VESGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQ   84 (131)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             eeECCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecc
Confidence            34566779999999999999876543  588887  2221      10             1235555544  4567899


Q ss_pred             EcCCCCCCCEEEEEEEE
Q psy16852         66 IINPTKEDIGVYTCKAT   82 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~   82 (579)
                      |.+++.+|++.|.|...
T Consensus        85 ~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          85 MNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             eeccccCCceEEEEecc
Confidence            99999999999999753

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.92  E-value=2e-05  Score=56.44  Aligned_cols=88  Identities=15%  Similarity=0.273  Sum_probs=49.6

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.+.|+...  .+.|++.    .++......         ..|.   ..+...+.-.....+..+..|
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ----~PGkglEwl---------g~i~---~~~~~~~y~~~~~gR~tiS~D   73 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQ----APGKGLEWV---------GSFD---PESGESIYAREFQGSVTMTAD   73 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCEEEE---------EEEE---TTTTEEEECGGGTTTEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEE----CCCCceeee---------eecC---Cccccceecceeeeeeeeecc
Confidence            457789999999999987654  6789883    111111110         0011   111111111111223334443


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEeC
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                        .+...|.|.+++.+|++.|.|.....
T Consensus        74 ~s~~t~~L~i~~L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          74 TSTNIAYMELSSLRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             cccceEEEeecccCcCcceEEEEeEcCC
Confidence              33456999999999999999986543

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=2.9e-05  Score=55.55  Aligned_cols=71  Identities=17%  Similarity=0.229  Sum_probs=46.9

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      ..+.++|.|.+.|+ |.. .|+|+++|..+.....                ........|.|+..              +
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~----------------~~~~~~~dgtys~~--------------S   66 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKN----------------TQPIMDTDGSYFVY--------------S   66 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEE----------------CCCEECTTSCEEEE--------------E
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEE----------------eeeecCCCCcEEEE--------------E
Confidence            35678999999995 543 8999999987632110                11122334556433              3


Q ss_pred             EEEEeecccccceeEEEEEEeCC
Q psy16852        499 VLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      .|+|..-+......|+|.+....
T Consensus        67 ~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          67 KLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             EEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEEECHHHhCCCCEEEEEEEECC
Confidence            48877776666778999998763

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=8.4e-06  Score=58.70  Aligned_cols=83  Identities=18%  Similarity=0.241  Sum_probs=50.1

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCC--CeeEEEECCEEecCCCCEE-EEEe-CC----EEEEEEcCCCCCCCEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQKDGTELHATEHYL-ITTV-ES----VSTLEIINPTKEDIGV   76 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~g~~~~~~~~~~-~~~~-~~----~~~L~i~~~~~~d~G~   76 (579)
                      .+|.+..-|....-..++.++|.|.+.++-+  ..|+|++||..+..+.... .... ++    .+.|.|..........
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            4666655443322334778999999998533  3799999999876432110 0111 11    2456665444334567


Q ss_pred             EEEEEEcCCee
Q psy16852         77 YTCKATNIGGV   87 (579)
Q Consensus        77 Y~C~~~~~~g~   87 (579)
                      |+|.+.+....
T Consensus        84 ytC~V~H~~~~   94 (102)
T d1rzfl2          84 YSCQVTHEGST   94 (102)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCcc
Confidence            99999987543

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.91  E-value=6e-06  Score=58.60  Aligned_cols=81  Identities=16%  Similarity=0.198  Sum_probs=44.7

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEeeCC--CeeEEEECCEEecCCCCEE-EEEeC-C-EEEEEEcCCCCCCCEEEEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQKDGTELHATEHYL-ITTVE-S-VSTLEIINPTKEDIGVYTC   79 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~g~~~~~~~~~~-~~~~~-~-~~~L~i~~~~~~d~G~Y~C   79 (579)
                      ++|.+...|... ...|+..+|.|.+.|+-+  ..++|.+||..+..+.... ....+ + -.......+..++...|+|
T Consensus         1 V~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   79 (97)
T d1uvqb1           1 VEPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTC   79 (97)
T ss_dssp             BCCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEE
T ss_pred             CCCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEE
Confidence            467776654443 345788899999988633  4899999998875432111 01111 1 1122222345667789999


Q ss_pred             EEEcCCe
Q psy16852         80 KATNIGG   86 (579)
Q Consensus        80 ~~~~~~g   86 (579)
                      ++.+..-
T Consensus        80 ~V~H~sl   86 (97)
T d1uvqb1          80 HVEHPSL   86 (97)
T ss_dssp             EEECTTC
T ss_pred             EEEeCCC
Confidence            9988643

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.3e-05  Score=57.82  Aligned_cols=86  Identities=21%  Similarity=0.222  Sum_probs=52.6

Q ss_pred             CCCCccccc-cC-ceeeeCCCCEEEEEEEEee-CCC-eeEEEECCEEecCCCCEEE-EEeCC----EEEEEEcCCCCCCC
Q psy16852          4 VLAPRFIEK-IQ-PVVSHQEQPALFTCKVEGH-PLP-TMTWQKDGTELHATEHYLI-TTVES----VSTLEIINPTKEDI   74 (579)
Q Consensus         4 ~~~p~~~~~-p~-~~~v~~G~~~~l~C~~~~~-~~~-~v~W~~~g~~~~~~~~~~~-~~~~~----~~~L~i~~~~~~d~   74 (579)
                      +-||.+..- |. ......+..++|.|.+.+. |.. .|+|++||..+........ ...++    .+.|.|..-.....
T Consensus         2 ~~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~   81 (104)
T d1o0va1           2 FTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSD   81 (104)
T ss_dssp             CCCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTT
T ss_pred             CCCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCC
Confidence            456665443 22 2233456789999999885 433 7999999998865432222 12222    24566654443446


Q ss_pred             EEEEEEEEcCCeeeE
Q psy16852         75 GVYTCKATNIGGVAT   89 (579)
Q Consensus        75 G~Y~C~~~~~~g~~~   89 (579)
                      ..|+|++.+......
T Consensus        82 ~~ytC~V~H~~~t~~   96 (104)
T d1o0va1          82 RTYTCQVTYQGHTFE   96 (104)
T ss_dssp             CCEEEEEEETTEEEE
T ss_pred             CEEEEEEEECCEeEE
Confidence            679999998765443

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.89  E-value=2e-05  Score=56.26  Aligned_cols=86  Identities=14%  Similarity=0.254  Sum_probs=49.8

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.++|+...  .+.|.+.    .+......            |..+...+...|.-.....+..+..|
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ----~PGkglew------------vg~i~~~~~~~~ya~s~kgR~tiSrD   73 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQ----APGKGLEW------------VGLIDPEQGNTIYDPKFQDRATISAD   73 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEE----CTTSCEEE------------EEEECTTTCCEEECTTTTTTEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccee----CCCcceEe------------eeecccccccccccccceeeEEEEec
Confidence            457889999999999987654  6889873    11111111            11111111111111111223334443


Q ss_pred             --CCeeEEEEeecccccceeEEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                        .+...|.+.+++.+|++.|.|...
T Consensus        74 ~s~nt~yL~m~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          74 NSKNTAYLQMNSLRAEDTAVYYCARD   99 (117)
T ss_dssp             GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccceEEecccccCCCCceEEEEeec
Confidence              344568999999999999999654

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.4e-05  Score=55.43  Aligned_cols=71  Identities=15%  Similarity=0.223  Sum_probs=47.1

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .++.++|.|.+.|+ |.. .|.|+++|.......                .........|.|+..              +
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~----------------~~~~~~~~dgtys~~--------------S   67 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK----------------TTPPVLDSDGSFFLY--------------S   67 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE----------------ECCCEECTTSCEEEE--------------E
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeE----------------EcceEECCCCCEEEE--------------E
Confidence            46789999999985 543 899999998753211                111222334555433              4


Q ss_pred             EEEEeecccccceeEEEEEEeCC
Q psy16852        499 VLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      .|.|..-.....-.|+|.+.+..
T Consensus        68 ~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          68 KLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             EEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEEECHHHcCCCCEEEEEEEeCC
Confidence            48887777666668999998864

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.89  E-value=4.4e-05  Score=54.74  Aligned_cols=88  Identities=14%  Similarity=0.214  Sum_probs=51.2

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+++|++++|+|.+.|+...  .+.|++.    .++......         ..|.   ......|.-.....++.+..
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ----~pGkglewl---------~~i~---~~~~~~~y~~~~kgRftiS~   71 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVKQ----KSGQGLEWI---------GYIY---PYNGGTRYNEKFRGKATLTS   71 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEEE----CTTSCEEEE---------EEEE---TTTTEEEECGGGTTCEEEEE
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCcccee----CCCccceee---------eecC---CccCccccccceeeeEEEEe
Confidence            3457889999999999987655  6889884    122221110         0111   11111111111222334444


Q ss_pred             e--CCeeEEEEeecccccceeEEEEEEe
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      +  .+...|.|.+++.+|++.|.|....
T Consensus        72 D~s~~t~~L~m~sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          72 DKSSNTAYLELSSLTSEDSAVYYCARSS   99 (117)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccCceeEeecccccCCCcceEEEEeecc
Confidence            3  3445699999999999999996543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=1.5e-05  Score=59.58  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=20.8

Q ss_pred             CeeEEEEeecccccceeEEEEEEeC
Q psy16852        496 NRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       496 ~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                      ....|+|.+++.+|+|.|.|.+...
T Consensus        77 ~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          77 KVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             CEEEEEECCCChhHCEEEEEEEEeC
Confidence            4456999999999999999988654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.88  E-value=8.8e-06  Score=57.85  Aligned_cols=77  Identities=19%  Similarity=0.364  Sum_probs=48.3

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEee-C-CCeeEEEECCEEecCCCCEE-EEEeC-C----EEEEEEcCCCCCCCEE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGH-P-LPTMTWQKDGTELHATEHYL-ITTVE-S----VSTLEIINPTKEDIGV   76 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~-~~~v~W~~~g~~~~~~~~~~-~~~~~-~----~~~L~i~~~~~~d~G~   76 (579)
                      -+|.+...+... +..|+..+|.|.+.|+ | ...|+|.+||..+..+.... ....+ +    .+.|.+..   +|...
T Consensus         4 ~~P~V~v~~~~~-~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~   79 (99)
T d1uvqa1           4 EVPEVTVFSKSP-VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEI   79 (99)
T ss_dssp             CCCEEEEEESSC-CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCC
T ss_pred             cCCEEEEEcCCc-ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCE
Confidence            466665544332 4568899999999986 3 34899999999886431110 11111 1    24455543   45568


Q ss_pred             EEEEEEcCC
Q psy16852         77 YTCKATNIG   85 (579)
Q Consensus        77 Y~C~~~~~~   85 (579)
                      |+|++.+..
T Consensus        80 ytC~V~H~s   88 (99)
T d1uvqa1          80 YDCKVEHWG   88 (99)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998864

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.88  E-value=1.1e-05  Score=59.33  Aligned_cols=88  Identities=13%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      |....+.+|++++|.|... .....+.|++..    ++....+.         +.+..    ....+.-.+.........
T Consensus         6 P~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~----~g~~p~~l---------~~~~~----~~~~~~~~~~~~~~~~~~   67 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQD-MNHEYMSWYRQD----PGMGLRLI---------HYSVG----AGITDQGEVPNGYNVSRS   67 (112)
T ss_dssp             CSEEEEETTCCEEEEEEES-SCCSEEEEEEEE----TTTEEEEE---------EEEEE----TTEEEECSSCTTCEECCS
T ss_pred             CCeEEECCCCCEEEEEEEE-CCccceEecccc----cccCccce---------eeEec----cCceecCccccceeEecC
Confidence            4445688999999999875 334579999831    11111110         01110    001111011111122223


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      +.....|+|.++..+|+|.|.|.+..
T Consensus        68 ~~~~~~L~I~~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          68 TTEDFPLRLLSAAPSQTSVYFCASSY   93 (112)
T ss_dssp             SSSBCCEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHCEEEEEeecC
Confidence            44556799999999999999998753

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.86  E-value=2.6e-05  Score=55.96  Aligned_cols=85  Identities=9%  Similarity=0.150  Sum_probs=47.7

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.+.|+...  .+.|++.    .++......         ..|   ...+...+.-....+++.+..+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ----~PGkglewl---------~~i---~~~~~~~~y~~~~~gRftis~D   73 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQ----SHGKSLEWI---------GYI---VPYSGGTTFNQKFKGKATLTVD   73 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE----ETTTEEEEE---------EEE---CTTTCCEEECGGGBTTEEEEEE
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEE----cCCCccEEe---------ecc---CCCCCcccccceeeEEEEEeec
Confidence            347789999999999986543  6889883    111111110         011   1111111111111123334333


Q ss_pred             --CCeeEEEEeecccccceeEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                        .+...|.|.+++.+|++.|.|..
T Consensus        74 ~s~~t~~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          74 KSSSTAFMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCceeeEeeeeecCcCCcEEEEEec
Confidence              34456999999999999999953

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.86  E-value=2.3e-05  Score=59.00  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             CCeeec-CCCceeeecCCCeEEEEEEEeeC-CC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEE
Q psy16852        407 APKFTK-PLKPVIAEAQSPATLKATVTGRP-TP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVK  483 (579)
Q Consensus       407 ~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p-~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  483 (579)
                      ||.+.. ++.......+..++|.|.+.|+- .. .|.|+++|..+..+....          ............|.|+..
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~----------~~~~~~~~~~~d~tys~s   73 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTD----------PQPLKEQPALNDSRYSLS   73 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEEC----------SSCEESCTTSTTCCEEEE
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEec----------ceeeeecccCCCCeEEEE
Confidence            565553 33333455678899999999854 33 899999998874321000          001112223345566533


Q ss_pred             eecceeeeeeeCCeeEEEEeecccccce-eEEEEEEeCCe
Q psy16852        484 ASSTETKIMTDGNRSVLLISKITRDQIG-DVTCRAENVAG  522 (579)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g  522 (579)
                                    +.|.|..-...+.| .|+|.+.+...
T Consensus        74 --------------S~L~v~~~~W~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          74 --------------SRLRVSATFWQNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             --------------EEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             --------------EEEEECHHHhCCCCCEEEEEEEECCC
Confidence                          44888877777766 69999987543

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.86  E-value=4.2e-05  Score=54.91  Aligned_cols=71  Identities=18%  Similarity=0.246  Sum_probs=46.3

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .++.++|.|.+.|+ |.. .|+|+++|........                ........|.|+..              +
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~----------------~~~~~~~dgtys~~--------------S   67 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKN----------------TEPVLDSDGSYFMY--------------S   67 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE----------------CCCEECTTSCEEEE--------------E
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEE----------------ccceeCCCCcEEEE--------------E
Confidence            46789999999985 543 8999999976532110                11112233455433              4


Q ss_pred             EEEEeecccccceeEEEEEEeCC
Q psy16852        499 VLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      .|.|..-+.+....|+|.+.+..
T Consensus        68 ~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          68 KLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             EEEEEHHHHHTCCCEEEEEECTT
T ss_pred             EEEECHHHcCCCCEEEEEEEeCC
Confidence            48777776666778999998753

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.85  E-value=3.5e-05  Score=55.56  Aligned_cols=88  Identities=8%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             CceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      -...+++|++++|+|.++|+...  -+.|.+.    .++.....            |..+...+...+.-.....+..+.
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ----~PGkglEw------------lg~i~~~~~~~~ya~s~kgR~tiS   72 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQ----APGQRLEW------------MGWISAGTGNTKYSQKFRGRVTFT   72 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEE----CTTSCEEE------------EEEEETTTCCEEECGGGTTTEEEE
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEe----CCCCceee------------eeeecCcccccccccceeEeeEEe
Confidence            44568899999999999987655  6889883    12211111            000111110001011111223344


Q ss_pred             ee--CCeeEEEEeecccccceeEEEEEE
Q psy16852        493 TD--GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       493 ~~--~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      .|  .+...|.|.+++.+|++.|.|...
T Consensus        73 ~D~s~ntvyL~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          73 RDTSATTAYMGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             EETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccCCcceeeecccccCCCcceEEEEeec
Confidence            43  334459999999999999999764

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.85  E-value=2.7e-05  Score=55.81  Aligned_cols=86  Identities=8%  Similarity=0.162  Sum_probs=49.5

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +..+++|+++.|+|.+.|+...  .+.|.+.    .++.....            |..+...+...|.-.....+..+..
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ----~PGkglew------------lg~i~~~~~~~~y~~~~kgR~tiS~   72 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVKQ----SHAKSLEW------------IGLISTYSGYTNYNQKFKGKATMTV   72 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE----CSSSSEEE------------EEEECTTTCCEEECGGGBTTEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccee----CCCccccc------------ccccCCcCCcchhhhhhcccEEEec
Confidence            3457889999999999987765  6889883    12222111            0111111111111111112333443


Q ss_pred             e--CCeeEEEEeecccccceeEEEEE
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                      |  .+...|.|.+++.+|++.|.|..
T Consensus        73 D~s~~t~~L~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          73 DKSSSTAYMELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             EGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccCcceEeecccccccCcceeeeEEE
Confidence            3  34456999999999999999943

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=8.3e-06  Score=58.54  Aligned_cols=71  Identities=20%  Similarity=0.433  Sum_probs=49.3

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ecC----------CCCEEEEEe--CCEEEEEEcCC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LHA----------TEHYLITTV--ESVSTLEIINP   69 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~~----------~~~~~~~~~--~~~~~L~i~~~   69 (579)
                      +.....|++|++++|+|+++|....  .+.|+|  .|+.      +..          ..++.+..+  .....|+|.++
T Consensus         6 eSg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L   85 (116)
T d1fn4b1           6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL   85 (116)
T ss_dssp             EECCSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESC
T ss_pred             eECCceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceecc
Confidence            4555678999999999999886543  588988  2221      111          123333332  34578999999


Q ss_pred             CCCCCEEEEEEEE
Q psy16852         70 TKEDIGVYTCKAT   82 (579)
Q Consensus        70 ~~~d~G~Y~C~~~   82 (579)
                      +.+|++.|.|...
T Consensus        86 ~~eDTAvYyCAr~   98 (116)
T d1fn4b1          86 QTDDTGTYYCTRD   98 (116)
T ss_dssp             CCCCCEEEEEEEE
T ss_pred             CCCCCEEEEEEee
Confidence            9999999999654

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=4.8e-05  Score=54.59  Aligned_cols=70  Identities=21%  Similarity=0.216  Sum_probs=45.7

Q ss_pred             CCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeE
Q psy16852        422 QSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV  499 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~  499 (579)
                      .+.++|.|.+.|+-+.  +|+|+++|..+.....                ........|.|..              .+.
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~----------------~~~~~~~dgt~s~--------------~S~   68 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN----------------TPPTMDTDGSYFL--------------YSK   68 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE----------------CCCEECTTSCEEE--------------EEE
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEE----------------cccEeCCCCCEEE--------------EEE
Confidence            5678999999986433  8999999987632110                1111222345532              344


Q ss_pred             EEEeecccccceeEEEEEEeCC
Q psy16852        500 LLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       500 l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      |.|..-+......|+|.|....
T Consensus        69 L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          69 LNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             EEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEECHHHhCCCCEEEEEEEeCC
Confidence            8887777776778999998753

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=2.2e-05  Score=55.18  Aligned_cols=64  Identities=23%  Similarity=0.393  Sum_probs=40.2

Q ss_pred             CCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-----------CCCCEEEEEe--CCEEEEEEcCCCCCCCEE
Q psy16852         20 QEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-----------ATEHYLITTV--ESVSTLEIINPTKEDIGV   76 (579)
Q Consensus        20 ~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~~~~~~d~G~   76 (579)
                      +|++|+|+|+++|....  .+.|+|  .|+.      |.           ...++.+..+  .....|+|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            59999999999886543  588987  2221      11           1234544432  345689999999999999


Q ss_pred             EEEEEEc
Q psy16852         77 YTCKATN   83 (579)
Q Consensus        77 Y~C~~~~   83 (579)
                      |.|....
T Consensus        81 YYCAr~~   87 (103)
T d1oari_          81 YYCARMW   87 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeEEEC
Confidence            9997644

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.84  E-value=5.9e-05  Score=53.42  Aligned_cols=44  Identities=25%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             CCCeeecCCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCC
Q psy16852        406 EAPKFTKPLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILP  450 (579)
Q Consensus       406 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~  450 (579)
                      .+|.+...+. .....|+..+|.|.+.|+-+.  .|+|++||..+..
T Consensus         4 ~~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   49 (99)
T d1uvqa1           4 EVPEVTVFSK-SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTE   49 (99)
T ss_dssp             CCCEEEEEES-SCCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECT
T ss_pred             cCCEEEEEcC-CcccCCCcEEEEEEEEEEECCCCEEEEEECCEeccC
Confidence            3555543211 124567889999999996433  8999999998854

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.83  E-value=3.4e-05  Score=55.50  Aligned_cols=86  Identities=15%  Similarity=0.304  Sum_probs=50.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|+++.|+|.+.|+...  .+.|++.    .+......            |..+...+...|.-.....++.+..|
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ----~PGkglew------------v~~i~~~~~~~~ya~s~kgRftiSrD   73 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQ----APGKGLEW------------MGLIDPEDADTMYAEKFRGRVTITAD   73 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCEEE------------EEEEETTTTEEEECTTTTTTEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcccc----CCccceee------------eeecCCcccccccccceeeeEEEecc
Confidence            456789999999999987655  6889883    22222111            11111111111111111223344443


Q ss_pred             --CCeeEEEEeecccccceeEEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                        .+...|.|.+++.+|++.|.|...
T Consensus        74 ~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          74 TSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cCceEEEeeeeccCcccceEEEEeec
Confidence              344569999999999999999653

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=0.00033  Score=45.45  Aligned_cols=82  Identities=22%  Similarity=0.253  Sum_probs=54.3

Q ss_pred             ceeeeCCCCEEEEEEEEe-eCCCeeEEEE-CCEE---ecCCCCEEEEEe----CCEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852         15 PVVSHQEQPALFTCKVEG-HPLPTMTWQK-DGTE---LHATEHYLITTV----ESVSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        15 ~~~v~~G~~~~l~C~~~~-~~~~~v~W~~-~g~~---~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      .-.+..|+.+.|.|.+.- ...|+++|.| +|..   +.........-.    -....|.+..+-.+|.|.|+|.|.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            356789999999999963 3567999987 4432   222222221111    135789999999999999999997555


Q ss_pred             eeeE-EEEEEEE
Q psy16852         86 GVAT-CSANLIV   96 (579)
Q Consensus        86 g~~~-~~~~~~v   96 (579)
                      +-.. .++++.|
T Consensus        92 ~vieSHSvti~V  103 (104)
T d1xaua_          92 QVINSHSVTIHV  103 (104)
T ss_dssp             EEEECCCEEEEE
T ss_pred             hheecceEEEEe
Confidence            5333 3455544

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.83  E-value=1.3e-05  Score=58.42  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=49.8

Q ss_pred             ccCceeeeCCCCEEEEEEEEeeCC---CeeEEEE--CCEEe------cC----------CCCEEEEEe--CCEEEEEEcC
Q psy16852         12 KIQPVVSHQEQPALFTCKVEGHPL---PTMTWQK--DGTEL------HA----------TEHYLITTV--ESVSTLEIIN   68 (579)
Q Consensus        12 ~p~~~~v~~G~~~~l~C~~~~~~~---~~v~W~~--~g~~~------~~----------~~~~~~~~~--~~~~~L~i~~   68 (579)
                      +.....+++|+++.|.|.+.|...   -.+.|+|  .|+.+      ..          ..++.+..+  .....|+|.+
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~   85 (127)
T d3cx5j1           6 ESGAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNS   85 (127)
T ss_dssp             EEECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceec
Confidence            455677899999999999998754   2578988  23221      11          123433333  4567899999


Q ss_pred             CCCCCCEEEEEEE
Q psy16852         69 PTKEDIGVYTCKA   81 (579)
Q Consensus        69 ~~~~d~G~Y~C~~   81 (579)
                      ++.+|++.|+|..
T Consensus        86 l~~eDtAvYyCAr   98 (127)
T d3cx5j1          86 VTTEDTATYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccceEEEeee
Confidence            9999999999974

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.81  E-value=8.3e-06  Score=58.68  Aligned_cols=72  Identities=14%  Similarity=0.312  Sum_probs=51.0

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCCC--eeEEEE--CCEE------ec-------------CCCCEEEEEe--CCEEEEE
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPLP--TMTWQK--DGTE------LH-------------ATEHYLITTV--ESVSTLE   65 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~~--~v~W~~--~g~~------~~-------------~~~~~~~~~~--~~~~~L~   65 (579)
                      .+.....+++|+++.|+|+++|....  .+.|+|  .|+.      +.             ...++.+..+  .+...|+
T Consensus         5 ~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~   84 (121)
T d1nfdf1           5 VESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQ   84 (121)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeece
Confidence            45677889999999999999986543  478988  2221      11             1123333333  3467799


Q ss_pred             EcCCCCCCCEEEEEEEE
Q psy16852         66 IINPTKEDIGVYTCKAT   82 (579)
Q Consensus        66 i~~~~~~d~G~Y~C~~~   82 (579)
                      |.+++.+|++.|+|...
T Consensus        85 ~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          85 MNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EESCCGGGCEECEEEEE
T ss_pred             ecccCCCcceEEEEecc
Confidence            99999999999999653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.81  E-value=3.6e-05  Score=55.02  Aligned_cols=84  Identities=10%  Similarity=0.198  Sum_probs=48.2

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.+.|+...  .+.|.+.    .++.....            |..+.......+.-.....++.+..|
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ----~PGkglEw------------vg~i~~~~~~~~ya~~~kgRftisrD   73 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQ----APGKGLNW------------MGWVNTETGEPTYADDFKGRFAFSLE   73 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCEEE------------EEEECTTTCCEEECGGGSSSEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecccc----CCCcccee------------eeecCcccccchhhhheeeeeEEEec
Confidence            457889999999999986654  6889883    12221111            11111111111111111122334333


Q ss_pred             --CCeeEEEEeecccccceeEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCR  516 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~  516 (579)
                        .+...|.+.+++.+|++.|.|.
T Consensus        74 ~s~~tvyL~~~~L~~eDtAvYYCA   97 (118)
T d1nlbh1          74 TSASTAYLQINSLKNEDTATYFCA   97 (118)
T ss_dssp             GGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCceeEEeeeeecccCcceEEEEe
Confidence              3445699999999999999994

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.81  E-value=3.1e-05  Score=55.07  Aligned_cols=85  Identities=12%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.+.|+...  .+.|++.    .++......         ..|.   ......|.-.....+..+..+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ----~PGkglEwv---------~~i~---~~~~~~~y~~s~kgRftiSrD   73 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQ----TPEKRLEWV---------ATTL---SGGGFTFYSASVKGRFTISRD   73 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTCCEEEE---------EEEC---STTCCEEECTTTTTTEEEEEE
T ss_pred             ceECCCCCEEEEEEECccCccCCceecccc----CCCCccEEe---------eecc---cccchhhhhhhheeeEEEecc
Confidence            457889999999999987654  6789883    122111110         0111   111111111111122334433


Q ss_pred             --CCeeEEEEeecccccceeEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                        .+...|.|.+++.+|++.|.|..
T Consensus        74 ~s~nt~~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          74 NAQNNLYLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred             CccceeeeeeeeeccCcccEEEECC
Confidence              34455999999999999999963

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.81  E-value=7.9e-05  Score=53.06  Aligned_cols=80  Identities=16%  Similarity=0.153  Sum_probs=49.9

Q ss_pred             eecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852        419 AEAQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN  496 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~  496 (579)
                      +..|+..+|.|.+.|+ |.. .|.|++||..+........                ...+.|.|...             
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~----------------~~~~dgty~~~-------------   65 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFV----------------SAVDGLSFQAF-------------   65 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEE----------------EEETTTEEEEE-------------
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceE----------------EeCCCCcEEEE-------------
Confidence            3468888999999995 433 8999999988643322111                12233455433             


Q ss_pred             eeEEEEeecccccceeEEEEEEeCCeeEEEEEEEE
Q psy16852        497 RSVLLISKITRDQIGDVTCRAENVAGSVTCTATLS  531 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  531 (579)
                       +.|.+..   +|...|+|.+....-.........
T Consensus        66 -S~L~v~~---~~~~~ytC~V~H~~l~~p~~~~w~   96 (103)
T d1hdma1          66 -SYLNFTP---EPSDIFSCIVTHEPDRYTAIAYWV   96 (103)
T ss_dssp             -EEEEECC---CTTCCEEEEEEETTTTEEEEEEEC
T ss_pred             -EEEEEec---CCCCEEEEEEEeCCCCCCEEEEec
Confidence             2255543   445579999999865555544444

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.80  E-value=6.7e-05  Score=54.03  Aligned_cols=86  Identities=20%  Similarity=0.329  Sum_probs=50.6

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.+.|+...  .+.|++.    .++.....         ...|.    .+...+.-.....+..+..|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ----~pGkglew---------l~~i~----~~g~~~y~~~~kgR~tiS~D   71 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRR----APGKGRDF---------VSGID----NDGTTTYVDSVAGRFTISQG   71 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEE----CTTSCEEE---------EEEEC----TTCCEEECGGGBTTEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeee----CCCCccee---------eeecc----cccchhhhhhhhcceEEecc
Confidence            347789999999999987654  5788884    22221111         01121    11111111111223344443


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEe
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                        .+...|.|.+++.+|++.|.|....
T Consensus        72 ~s~~~~~L~i~~L~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          72 NAKNTAYLQMDSLKPDDTAMYYCKPSL   98 (119)
T ss_dssp             SSTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCcceecccccCCcCCcceEeeeecc
Confidence              3445699999999999999997643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.80  E-value=6.4e-05  Score=55.09  Aligned_cols=89  Identities=13%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             CCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        414 LKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      |....+.+|++++|.|... .....+.|++..  -.......+...  ... ...   ......+.+.        ....
T Consensus         6 P~~~~~~~G~svtl~C~~~-~~~~~i~WYrQ~--~g~~~~~l~~~~--~~~-~~~---~~~~~~~~~~--------~~~~   68 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPI-SGHVSLFWYQQA--LGQGPEFLTYFQ--NEA-QLD---KSGLPSDRFF--------AERP   68 (112)
T ss_dssp             CSEEEEETTCCEEEEEECC-TTCCEEEEEEEC--TTSCCEEEEEEE--TTE-EEE---CTTCCSTTEE--------EECT
T ss_pred             CCeEEECCCCCEEEEEEEC-CCCCEEEeeeee--cccceEEeeeec--cCc-ccc---cCCCCCCcee--------eECC
Confidence            3445688999999999864 334579999831  001111111110  000 000   0001111111        1122


Q ss_pred             eCCeeEEEEeecccccceeEEEEEEe
Q psy16852        494 DGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       494 ~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      +.....|+|.+++.+|+|.|.|.+..
T Consensus        69 ~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          69 EGSVSTLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             TSSCEEEEESSCCGGGCEEEEEEEES
T ss_pred             cCCEEEEEECCCCcCCCEEEEEeeeC
Confidence            34567899999999999999998864

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=2.4e-05  Score=56.61  Aligned_cols=73  Identities=11%  Similarity=0.158  Sum_probs=52.7

Q ss_pred             ceEEccCCcEEEEEEEEee--cCCeEEEEEC--CE----EccCC-----------CCceEEEcCCCCeEEEEECcCCCCC
Q psy16852        114 PVIAEAQSPATLKATVTGR--PTPSICWYRG--KE----EILPD-----------NGHTMEFNPTTGECVLSISEATPQD  174 (579)
Q Consensus       114 ~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~--~~----~~~~~-----------~~~~~~~~~~~~~~~l~i~~~~~~d  174 (579)
                      ...+.+|++++|.|.+++.  ..-.+.|++.  ++    .+..+           .++.+..++..+...|+|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            4567899999999998653  4457899984  22    11111           2344555566778899999999999


Q ss_pred             CeEEEEEEEcCC
Q psy16852        175 EAVYSVKAVNTF  186 (579)
Q Consensus       175 ~G~Y~C~~~~~~  186 (579)
                      +|.|.|...+..
T Consensus        84 sa~YyCa~~~~~   95 (110)
T d1u9ka_          84 SGLYRCVIYHPP   95 (110)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEeCCC
Confidence            999999886543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.80  E-value=5.9e-05  Score=54.07  Aligned_cols=90  Identities=18%  Similarity=0.238  Sum_probs=50.6

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|+++.|+|.+.|+...  .+.|.+.    .++......         ..|.   ..+...+.-.....++.+..|
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ----~PGkglEwv---------~~i~---~~~~~~~Y~~s~kgRftiSrD   73 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQ----APGKGLEWI---------GEIH---PDSGTINYTPSLKDKFIISRD   73 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCEEEE---------EEEC---TTSSCEEECTTTTTTEEEEEC
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeee----cCCcceeee---------eecC---cccccccccccceeeEEEeec
Confidence            457789999999999987655  6789873    111111110         0111   111111100011122333333


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                        .+...|.|.+++.+|++.|.|......+
T Consensus        74 ~s~nt~~L~~~sL~~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          74 NAKNSLYLQMSKVRSEDTALYYCARLHYYG  103 (118)
T ss_dssp             SSSCEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CccceeeccccccCCCcceEEEeeEecCCC
Confidence              3445599999999999999998765544

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=5e-05  Score=53.77  Aligned_cols=79  Identities=13%  Similarity=0.209  Sum_probs=47.6

Q ss_pred             CceecCCCceEEccCCcEEEEEEEEeecCCeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852        106 PKFTKPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  185 (579)
                      |.+...+.+ .+..|++++|.|... .....+.++|++.....................+.|.+++..|+|.|+|.....
T Consensus         5 PsLsa~P~~-~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2           5 PTLSAQPSP-VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CEEEeeCCC-ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            455555554 477899999999854 244688888877643221111111111223467999999999999999988654


Q ss_pred             C
Q psy16852        186 F  186 (579)
Q Consensus       186 ~  186 (579)
                      .
T Consensus        83 ~   83 (98)
T d1ugna2          83 N   83 (98)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=3.5e-05  Score=57.12  Aligned_cols=71  Identities=13%  Similarity=0.059  Sum_probs=47.1

Q ss_pred             CceEEccCCcEEEEEEEEeecC---CeEEEEECC--EE--cc-----------CCCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRPT---PSICWYRGK--EE--IL-----------PDNGHTMEFNPTTGECVLSISEATPQD  174 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~--~~--~~-----------~~~~~~~~~~~~~~~~~l~i~~~~~~d  174 (579)
                      ..+.+.+|+.++|.|.......   ..+.||+..  +.  +.           ...+.....+.......|.|.+++.+|
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVD   86 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcccc
Confidence            4466788999999999854322   257899832  11  10           011222233334456899999999999


Q ss_pred             CeEEEEEEE
Q psy16852        175 EAVYSVKAV  183 (579)
Q Consensus       175 ~G~Y~C~~~  183 (579)
                      +|.|.|.+.
T Consensus        87 sa~YyCa~~   95 (117)
T d1dqta_          87 TGLYLCKVE   95 (117)
T ss_dssp             CEEEEEEEE
T ss_pred             CEeEEEEEe
Confidence            999999875

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.9e-05  Score=57.63  Aligned_cols=73  Identities=14%  Similarity=0.113  Sum_probs=47.5

Q ss_pred             CCceEEccCCcEEEEEEEEeecC---CeEEEEECCE----Ecc-----C------CCCceEEEcCCCCeEEEEECcCCCC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRPT---PSICWYRGKE----EIL-----P------DNGHTMEFNPTTGECVLSISEATPQ  173 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~----~~~-----~------~~~~~~~~~~~~~~~~l~i~~~~~~  173 (579)
                      +..+.+.+|+.++|.|.......   ..+.||+...    ++.     .      ..+.....+.......|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            34566788999999999853322   2689998421    100     0      0111112233455689999999999


Q ss_pred             CCeEEEEEEEc
Q psy16852        174 DEAVYSVKAVN  184 (579)
Q Consensus       174 d~G~Y~C~~~~  184 (579)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998753

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.78  E-value=6.6e-05  Score=54.29  Aligned_cols=86  Identities=8%  Similarity=0.208  Sum_probs=49.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee-
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT-  493 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~-  493 (579)
                      ..+++|++++|+|.+.|....  .+.|++.    .++.....          |  ..+.......+.-.....+..+.. 
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ----~PGk~lew----------l--~~i~~~~~~~~y~~~~kgR~tis~d   73 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQ----SHGKNLEW----------I--GLVHPHNGAITYNQKFKDKATLTVD   73 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEE----CTTSCEEE----------E--EEEETTTTEEEECGGGTTTEEEEEE
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeee----cCCCceEE----------e--eecCccccchhhhHHhhhcceeeec
Confidence            457889999999999986544  6889884    11111111          0  011111111111111112233333 


Q ss_pred             -eCCeeEEEEeecccccceeEEEEEE
Q psy16852        494 -DGNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       494 -~~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                       +.+...|.|.+++.+|++.|.|...
T Consensus        74 ~s~n~v~L~i~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          74 RSSTTAYIELVRLTSNDSAVYYCARE   99 (120)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCcceEEccccccCCCcceEEEeeec
Confidence             3345569999999999999999864

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.78  E-value=5.7e-06  Score=59.14  Aligned_cols=71  Identities=18%  Similarity=0.362  Sum_probs=50.1

Q ss_pred             cccCceeeeCCCCEEEEEEEEeeCC--CeeEEEEC--CE------Eec-C----------CCCEEEEEe--CCEEEEEEc
Q psy16852         11 EKIQPVVSHQEQPALFTCKVEGHPL--PTMTWQKD--GT------ELH-A----------TEHYLITTV--ESVSTLEII   67 (579)
Q Consensus        11 ~~p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~--g~------~~~-~----------~~~~~~~~~--~~~~~L~i~   67 (579)
                      .+.....+++|+++.|+|.++|...  -.+.|+|.  |+      .|. .          ..++.+..+  .+...|+|.
T Consensus         5 ~esG~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~   84 (117)
T d1b2wh1           5 VQSGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMN   84 (117)
T ss_dssp             EECCCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeec
Confidence            3466678999999999999987643  25778872  21      121 1          134555433  346789999


Q ss_pred             CCCCCCCEEEEEEE
Q psy16852         68 NPTKEDIGVYTCKA   81 (579)
Q Consensus        68 ~~~~~d~G~Y~C~~   81 (579)
                      +++.+|++.|+|..
T Consensus        85 sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          85 SLRPEDTAVYYCAR   98 (117)
T ss_dssp             SCCGGGCEEEECCE
T ss_pred             cccCCcceEEEEcc
Confidence            99999999999964

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=0.00017  Score=46.81  Aligned_cols=75  Identities=12%  Similarity=0.103  Sum_probs=50.1

Q ss_pred             eeeecCCCeEEEEEEE-eeCCCeEEEeeCCE----EcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        417 VIAEAQSPATLKATVT-GRPTPSICWYRGKE----EILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~----~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      .++..|+.+.|.|.+. ..-.|.++|-|-.+    +|.........+                               ..
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW-------------------------------~e   61 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSW-------------------------------EE   61 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEE-------------------------------EC
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccch-------------------------------hh
Confidence            5688899999999997 35678999988332    222222211111                               11


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      ..+-+...|.+.++-.+|.|.|+|-|.-..|
T Consensus        62 ~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          62 NRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             SSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             cCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            1233456688999999999999999976655

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.77  E-value=0.00014  Score=50.99  Aligned_cols=30  Identities=17%  Similarity=0.370  Sum_probs=24.2

Q ss_pred             CCCeEEEEEEEee-CCC-eEEEeeCCEEcCCC
Q psy16852        422 QSPATLKATVTGR-PTP-SICWYRGKEEILPD  451 (579)
Q Consensus       422 g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~  451 (579)
                      ++.++|.|.+.|+ |.. .|.|+++|..+..+
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~   46 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHD   46 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCST
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCC
Confidence            4568999999995 544 89999999988644

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.77  E-value=5.6e-07  Score=64.09  Aligned_cols=72  Identities=17%  Similarity=0.290  Sum_probs=47.7

Q ss_pred             eEEccCCcEEEEEEEEeecCCeEEEEEC--CEEcc------------CCCCceEEEcCCCCeEEEEECcCCCCCCeEEEE
Q psy16852        115 VIAEAQSPATLKATVTGRPTPSICWYRG--KEEIL------------PDNGHTMEFNPTTGECVLSISEATPQDEAVYSV  180 (579)
Q Consensus       115 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  180 (579)
                      +.+.+|++++|.|.... ....+.||+.  ++.+.            ...+.....+.......|.|.+++.+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            45779999999998743 2357999983  22110            112223333333345679999999999999999


Q ss_pred             EEEcCCc
Q psy16852        181 KAVNTFG  187 (579)
Q Consensus       181 ~~~~~~~  187 (579)
                      .+....+
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            8865544

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.00016  Score=46.46  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=25.6

Q ss_pred             ecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCC
Q psy16852        420 EAQSPATLKATVTGRPTP--SICWYRGKEEILPDN  452 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~  452 (579)
                      ..|..+.|+|.....+.+  --.|.|+|..|..+.
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~   44 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA   44 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTT
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccC
Confidence            457889999999865443  568999999997653

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=1.7e-05  Score=55.38  Aligned_cols=73  Identities=19%  Similarity=0.322  Sum_probs=46.1

Q ss_pred             CCccccccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEEEEeCC-----EEEEEEcCCCCCCCEEEE
Q psy16852          6 APRFIEKIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLITTVES-----VSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         6 ~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~   78 (579)
                      ||.+.....+   ..++.++|.|.+.|+ |. ..++|.+||..+.... ......++     .+.|.+.   .+|...|+
T Consensus         3 PP~V~v~~~~---~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~---~~~~~~yt   75 (91)
T d3frua1           3 PPSMRLKARP---GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVK---RGDEHHYQ   75 (91)
T ss_dssp             CCEEEEEEEE---CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEE---TTCGGGEE
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEEC---CCCCCEEE
Confidence            5665543222   245689999999985 44 4899999998875432 22222221     2456654   34566899


Q ss_pred             EEEEcCC
Q psy16852         79 CKATNIG   85 (579)
Q Consensus        79 C~~~~~~   85 (579)
                      |++.+..
T Consensus        76 C~V~H~s   82 (91)
T d3frua1          76 CQVEHEG   82 (91)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998764

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=1.3e-05  Score=60.35  Aligned_cols=78  Identities=19%  Similarity=0.323  Sum_probs=53.2

Q ss_pred             CCCCccccc-cCceeeeCCCCEEEEEEEEeeCC--CeeEEEECCEEecCC----------------CCEEEEEeCCEEEE
Q psy16852          4 VLAPRFIEK-IQPVVSHQEQPALFTCKVEGHPL--PTMTWQKDGTELHAT----------------EHYLITTVESVSTL   64 (579)
Q Consensus         4 ~~~p~~~~~-p~~~~v~~G~~~~l~C~~~~~~~--~~v~W~~~g~~~~~~----------------~~~~~~~~~~~~~L   64 (579)
                      .+||.+... |.......+..++|.|.+.++-+  ..|+|++||..+...                ..|..     .+.|
T Consensus         2 ~~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~-----sS~L   76 (127)
T d1ogae2           2 VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSL-----SSRL   76 (127)
T ss_dssp             CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEE-----EEEE
T ss_pred             CcCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEE-----EEEE
Confidence            467876663 44445566888999999988643  379999999987532                12222     2567


Q ss_pred             EEcCCCCCCCE-EEEEEEEcCCe
Q psy16852         65 EIINPTKEDIG-VYTCKATNIGG   86 (579)
Q Consensus        65 ~i~~~~~~d~G-~Y~C~~~~~~g   86 (579)
                      .|..-...|.| .|+|++.+...
T Consensus        77 ~v~~~~W~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          77 RVSATFWQNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             EEEHHHHTCTTCEEEEEEEECCB
T ss_pred             EECHHHhCCCCCEEEEEEEECCC
Confidence            77665556655 79999987543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.76  E-value=4.1e-05  Score=55.00  Aligned_cols=85  Identities=12%  Similarity=0.309  Sum_probs=49.4

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.+.|+...  .+.|++.    .++.....            |..+...+...|.-.....++.+..|
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ----~PGkglew------------l~~i~~~~~~~~y~~s~kgRftiSrD   73 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQ----RPEQGLEW------------IGYISPGNGDIKYNEKFKVKATLTAD   73 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE----CSSSCEEE------------EEEECTTTCCEEECGGGTTTEEEEEE
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCcccee----CCccccee------------eeecCCcccchhhhhhhhcceEEEcc
Confidence            456789999999999987654  6889873    11211111            01111111112211111223334433


Q ss_pred             --CCeeEEEEeecccccceeEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                        .+...|.|.+++.+|++.|.|..
T Consensus        74 ~s~nt~~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          74 QSSSTAYMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCcceEEeeeecccCCcceEEEEEE
Confidence              34456999999999999999953

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.76  E-value=8.9e-06  Score=58.79  Aligned_cols=72  Identities=18%  Similarity=0.237  Sum_probs=47.7

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .++.++|.|.+.|+ |.. +|.|+++|..+.......                ....+.|.|+..              +
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~----------------~~~~~~~tys~~--------------S   68 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT----------------KPSKQGQNYMTS--------------S   68 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC----------------CCBCSSSCEEEE--------------E
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEec----------------cccCCCceEEEE--------------E
Confidence            35678999999985 443 899999999885432110                112233455433              3


Q ss_pred             EEEEeecccccceeEEEEEEeCCe
Q psy16852        499 VLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                      .|.|...+..+...|+|.|.+...
T Consensus        69 ~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          69 YLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             BCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             EEEEcHHHcCCCCEEEEEEEECCC
Confidence            377777777777789999988643

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=9.1e-05  Score=51.49  Aligned_cols=68  Identities=13%  Similarity=0.201  Sum_probs=43.1

Q ss_pred             CCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCeeE
Q psy16852        422 QSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRSV  499 (579)
Q Consensus       422 g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~  499 (579)
                      ++.++|.|.+.|+ |.. .|+|+++|..+..+. ..                ..+...|.|.....              
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~----------------~~~~~dgty~~~S~--------------   63 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CS----------------TGPNGDGSFHAWSL--------------   63 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EE----------------EEECSSSCEEEEEE--------------
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-cc----------------ceecCCCCEeEEEE--------------
Confidence            4578999999995 554 899999998874321 11                11233455543322              


Q ss_pred             EEEeecccccceeEEEEEEeCCee
Q psy16852        500 LLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       500 l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                      |.+.   .++...|+|.+....-.
T Consensus        64 l~v~---~~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          64 LEVK---RGDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             EEEE---TTCGGGEEEEEECTTSS
T ss_pred             EEEC---CCCCCEEEEEEEeCCCC
Confidence            5554   34556899999876543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.76  E-value=3.8e-05  Score=54.11  Aligned_cols=68  Identities=21%  Similarity=0.451  Sum_probs=43.5

Q ss_pred             cCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .++.++|.|.+.|+ |.. .|.|++++..+.....                ....+...|.|.....             
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~----------------~~~~~~~dgty~~~S~-------------   65 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQL----------------GDILPNANWTWYLRAT-------------   65 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEE----------------CCCEECTTSCEEEEEE-------------
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCcee----------------CccEeCCCCcEEEEEE-------------
Confidence            45689999999984 555 8999999987643211                1122334455543322             


Q ss_pred             EEEEeecccccceeEEEEEEeCC
Q psy16852        499 VLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                       |.+..   +|...|+|.+.+..
T Consensus        66 -L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          66 -LDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             -EEEEG---GGCTTEEEEEEEGG
T ss_pred             -EEEeC---ccCCEEEEEEEeCC
Confidence             65543   45568999998864

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5.9e-05  Score=52.40  Aligned_cols=81  Identities=23%  Similarity=0.254  Sum_probs=55.2

Q ss_pred             cccccCceeeeCCCCEEEEEEEEeeCCCeeE-EEECCEEec-CCCCEEEEEeCCEEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852          9 FIEKIQPVVSHQEQPALFTCKVEGHPLPTMT-WQKDGTELH-ATEHYLITTVESVSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus         9 ~~~~p~~~~v~~G~~~~l~C~~~~~~~~~v~-W~~~g~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      +...|+-+.+.+|+++.|.|.++ .|..+++ |..++..+. .+..+...   ....++|.++...|+|.|.|.|... |
T Consensus         8 ~~~~p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~D---pk~Gf~I~~~~~~~~g~y~C~a~~~-g   82 (95)
T d1fltx_           8 YSEIPEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWD---SRKGFIISNATYKEIGLLTCEATVN-G   82 (95)
T ss_dssp             CCSSCEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEE---TTTEEEESSCCGGGCEEEEEEEEET-T
T ss_pred             CCCCCCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEEC---CCCCEEEeCCCcccCeEEEEEEEEC-C
Confidence            33446678999999999999997 4555654 444666554 33333322   2245899999999999999999865 4


Q ss_pred             eeEEEEEE
Q psy16852         87 VATCSANL   94 (579)
Q Consensus        87 ~~~~~~~~   94 (579)
                      ....+..+
T Consensus        83 ~~~~S~yl   90 (95)
T d1fltx_          83 HLYKTNYL   90 (95)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            44444333

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.74  E-value=5.1e-05  Score=55.13  Aligned_cols=86  Identities=16%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|+++.|+|.++|+...  .+.|.+.    .+......            +..+...+...|.-.....+..+..|
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ----~PGkglew------------v~~i~~~~~~~~y~~s~kgR~tis~D   72 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQ----APGKAREG------------VAALYTHTGNTYYTDSVKGRFTISQD   72 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEE----CTTSCCEE------------EEEEETTTTEEEECGGGTTTEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCccccccccccccc----CCccceEE------------EeecccccccceeccccccccEEecc
Confidence            457789999999999987655  6889884    22221111            00111111111111111122334333


Q ss_pred             --CCeeEEEEeecccccceeEEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                        .+...|.+.+++.+|++.|.|...
T Consensus        73 ~s~~t~yLq~~sL~~eDtAvYYCAr~   98 (124)
T d1zvya1          73 KAKNMAYLRMDSVKSEDTAIYTCGAT   98 (124)
T ss_dssp             GGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cccceeeceeccccCCcceEEEEeec
Confidence              344559999999999999999764

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.74  E-value=7e-05  Score=53.67  Aligned_cols=86  Identities=16%  Similarity=0.298  Sum_probs=48.2

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+++|++++|+|.+.|+...  -+.|.+.    .+......            |..+...+...+.-.....+..+..
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ----~PGkglEw------------l~~i~~~~~~~~ya~~~~~R~t~s~   72 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQ----RPGQGLEW------------IGAIYPGNSATFYNHKFRAKTKLTA   72 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE----ETTTEEEE------------EEEEETTTTEEEECTTTTTTEEEEE
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeee----CCCCccee------------eEccCcccccccccccceeeEEEEc
Confidence            3457889999999999986544  6788873    11111111            1111111111111111111223333


Q ss_pred             e--CCeeEEEEeecccccceeEEEEE
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                      +  .+...|.|.+++.+|++.|.|..
T Consensus        73 D~s~~~~~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          73 VTSTTTAYMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccCccEeEeeecccCCCcceEEEEec
Confidence            3  34456999999999999999964

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.74  E-value=3.6e-05  Score=56.52  Aligned_cols=91  Identities=11%  Similarity=0.121  Sum_probs=51.2

Q ss_pred             cCCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeee
Q psy16852        412 KPLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKI  491 (579)
Q Consensus       412 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~  491 (579)
                      ..|....+.+|+.++|.|.... ....+.|++...  .......+..           ..     .+...-.....++..
T Consensus         6 Q~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~--g~~~~~l~~~-----------~~-----~~~~~~~~~~~~~~~   66 (113)
T d1nfdb1           6 QSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTL--GKELKFLIQH-----------YE-----KVERDKGFLPSRFSV   66 (113)
T ss_dssp             EECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCS--SCCCEEEEEE-----------ET-----TTEEEESSCCTTCCC
T ss_pred             EcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECC--cCCCcceeee-----------ee-----cccccCCCcccceee
Confidence            3345566889999999998653 335799998521  1111111111           10     000000001112222


Q ss_pred             -eeeCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852        492 -MTDGNRSVLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       492 -~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                       ........|+|.+++.+|+|.|.|.+....
T Consensus        67 ~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   97 (113)
T d1nfdb1          67 QQFDDYHSEMNMSALELEDSAMYFCASSLRW   97 (113)
T ss_dssp             EECTTSCEEEECCSCCGGGCEEECEEEESSS
T ss_pred             EcCCCCeEEEEecccCcCCceeEEEEeecCC
Confidence             233455789999999999999999876443

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=6.9e-05  Score=53.53  Aligned_cols=85  Identities=16%  Similarity=0.295  Sum_probs=48.5

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|+++.|+|.++|+...  .+.|.+.    .+......            +..+...+...+.-.....++.+..|
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ----~PGkglew------------vg~i~~~~~~t~ya~s~kgRfTiS~D   73 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQ----RPGQGLEW------------IAAIYPGDDDARYTQKFKGKATLTAD   73 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEE----CTTSCEEE------------EEEEEGGGTEEEECTTTTTTEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeee----CCCCccee------------eeccCccccccccccceeEEEEEecc
Confidence            456789999999999987655  6789873    22222111            00111111111111111123334443


Q ss_pred             --CCeeEEEEeecccccceeEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                        .+...|.|.+++.+|++.|.|..
T Consensus        74 ~s~~t~yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          74 RSSSIVYLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CccceeeecccccCCCcceEEEEee
Confidence              34456899999999999999965

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.4e-05  Score=58.26  Aligned_cols=81  Identities=14%  Similarity=0.190  Sum_probs=52.6

Q ss_pred             CCCccccc-cCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEEE--E---e-C----CEEEEEEcCCCC
Q psy16852          5 LAPRFIEK-IQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLIT--T---V-E----SVSTLEIINPTK   71 (579)
Q Consensus         5 ~~p~~~~~-p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~~--~---~-~----~~~~L~i~~~~~   71 (579)
                      .||.+... |....+..|+.++|.|.+.++ |. ..|+|++||..+..+......  .   . +    ..+.|+|..-..
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w   82 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW   82 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence            56776653 444556788999999999886 43 389999999987643221100  0   0 1    124566655444


Q ss_pred             CCCEEEEEEEEcCC
Q psy16852         72 EDIGVYTCKATNIG   85 (579)
Q Consensus        72 ~d~G~Y~C~~~~~~   85 (579)
                      .....|+|.|.+..
T Consensus        83 ~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          83 KKGDTFSCMVGHEA   96 (108)
T ss_dssp             HHTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEeCC
Confidence            45679999998864

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=6.4e-05  Score=53.43  Aligned_cols=87  Identities=15%  Similarity=0.252  Sum_probs=50.6

Q ss_pred             CceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      ....+++|+++.|+|.+.|+...  .+.|.+.    .+......            |..+...+...|.-.....+..+.
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ----~PGkgLEw------------~g~i~~~~~~~~ya~s~kgR~tiS   71 (116)
T d1mjuh1           8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQ----RPGQGLEW------------IGNIYPGSSYTHYNEKFKNKATLT   71 (116)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCEEE------------EEEEETTTTEEEECGGGTTTEEEE
T ss_pred             CCcEECCCCCEEEEEEEccCccccCceEeeee----CCCcceee------------eeecCccccccccccccceeeeEe
Confidence            34568889999999999987665  6788873    22221111            111111121122111112233344


Q ss_pred             ee--CCeeEEEEeecccccceeEEEEE
Q psy16852        493 TD--GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       493 ~~--~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                      .+  .+...|.+.+++.+|++.|.|..
T Consensus        72 ~D~s~~tvyL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          72 VDTSSSTAYMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             EETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cccccceeEecccccCCCCceEEEEcc
Confidence            33  34456889999999999999964

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.72  E-value=6.8e-05  Score=54.70  Aligned_cols=88  Identities=11%  Similarity=0.226  Sum_probs=49.9

Q ss_pred             CceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeee
Q psy16852        415 KPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       415 ~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~  492 (579)
                      ....+++|+++.|+|.+.|+...  -+.|.+.    .++.....            |..+...+...+.-.....+..+.
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ----~PGkglew------------ig~i~~~~g~~~y~~~~kgR~tis   70 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQ----APGHGLEW------------MGGIIPIFGTSNYAQKFRGRVTFT   70 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEE----CTTSCEEE------------EEEEEGGGTEEEECGGGTTTEEEE
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEe----CCccCcEE------------EeecCCcccccccccceeeeeEEe
Confidence            34457889999999999986554  6889883    22221111            111111111111111111233344


Q ss_pred             ee--CCeeEEEEeecccccceeEEEEEE
Q psy16852        493 TD--GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       493 ~~--~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      .|  .+...|.+.+++.+|++.|.|...
T Consensus        71 ~D~s~~tv~L~~~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          71 ADQATSTAYMELTNLRSDDTAVYYCARD   98 (130)
T ss_dssp             EETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccCCccEEEEEeeccCCCCcEEEEEEee
Confidence            43  334558999999999999999764

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.72  E-value=5.9e-05  Score=55.03  Aligned_cols=87  Identities=17%  Similarity=0.299  Sum_probs=50.8

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+++|++++|+|.+.|+...  .+.|.+.    .+......            |..+...+...+.-.....+..+..
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ----~pGkglew------------lg~i~~~~~~~~ya~s~~~R~tis~   72 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLKQ----RPDQGLEW------------IGYIDPATAYTESNQKFKDKAILTA   72 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTCCEEE------------EEEEETTTTEEEECGGGTTTEEEEE
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCccccC----CCCcccee------------eeecCCccccccccccceeeeEEec
Confidence            3457889999999999987654  6889883    22222111            1111111211221111222333444


Q ss_pred             e--CCeeEEEEeecccccceeEEEEEE
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      +  .+...|.|.+++.+|++.|.|...
T Consensus        73 D~s~n~vyL~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          73 DRSSNTAFMYLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccCcceEeeeeeccCcccceEEEEeee
Confidence            3  344569999999999999999754

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.71  E-value=6.9e-05  Score=53.72  Aligned_cols=87  Identities=11%  Similarity=0.191  Sum_probs=49.1

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+++|+++.|+|.++|+..-  -+.|.+.    .++.....            |..+...+...|.-.....+..+..
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ----~PGkgLEw------------lg~i~~~~~~~~y~~~~~gR~tis~   72 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQ----KPGQSLEW------------IAWIYAGSGGTVYNQHFTDKARLTV   72 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEE----CTTSCEEE------------EEEEETTTCCEEECTTSTTTEEEEE
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEE----CCCCceEe------------eeeccccccchhhhhheeeeEEEEe
Confidence            3457889999999999986654  6788873    12221111            0001111111111111112223333


Q ss_pred             --eCCeeEEEEeecccccceeEEEEEE
Q psy16852        494 --DGNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       494 --~~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                        +.+...|.|.+++.+|++.|.|...
T Consensus        73 D~s~~t~yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          73 DTSSSTAYMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             EGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCccceEEecccccCCCcceEEEEeee
Confidence              3345668999999999999999653

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.71  E-value=7.5e-05  Score=54.10  Aligned_cols=87  Identities=18%  Similarity=0.304  Sum_probs=49.1

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+++|++++|+|.+.|+...  .+.|++.    .++.....         ...|.   ..+...+.-.....+..+..
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ----~PGkgle~---------l~~i~---~~~~~~~y~~~~kgR~tis~   72 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQ----RPEQGLEW---------IGRID---PANGNSKYVPKFQGKATITA   72 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE----CTTCCCEE---------EEEEE---TTTTEEEECGGGTTTEEEEE
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeE----CCCCcccc---------ccccC---CcCCccccchhhccceEEEe
Confidence            3457889999999999986544  6889884    12211111         01111   11111110001112233333


Q ss_pred             e--CCeeEEEEeecccccceeEEEEEE
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      +  .+...|.|.+++.+|++.|.|...
T Consensus        73 D~s~~t~~L~i~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          73 DTSSNTAYLQLTSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             EGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecCCceeeecccccCcCcceEEEeEee
Confidence            3  344569999999999999999754

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=9.1e-05  Score=51.31  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=24.7

Q ss_pred             cCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCC
Q psy16852        421 AQSPATLKATVTGRPTP--SICWYRGKEEILPD  451 (579)
Q Consensus       421 ~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~  451 (579)
                      .++.++|.|.+.|+.+.  .|+|.++|..+..+
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~   46 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQD   46 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCC
Confidence            45689999999995444  78999999988543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.70  E-value=0.0001  Score=53.42  Aligned_cols=86  Identities=14%  Similarity=0.222  Sum_probs=49.5

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.++|+...  .+.|++.    .+......            |..+...+...+.-.....+..+..|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ----~PGkglew------------l~~i~~~~~~~~y~~s~kgR~tiS~D   73 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQ----APGKGLEW------------VSGISWDSSSIGYADSVKGRFTISRD   73 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCEEE------------EEEECTTSSSEEECGGGTTTEEEEEE
T ss_pred             ceECCCCCeEEEEEECCccccCCcceecee----CCCcccee------------eeecCcccccchhccccccceEEecc
Confidence            457789999999999987654  6889883    22221111            01111111111111111123344444


Q ss_pred             --CCeeEEEEeecccccceeEEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                        .+...|.|.+++.+|++.|.|...
T Consensus        74 ~s~nt~~L~~~~L~~eDtavYYCAr~   99 (126)
T d1dfbh1          74 NAKNSLYLQMNSLRAEDMALYYCVKG   99 (126)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCcEEEeeeeeeccCcceEEEEEec
Confidence              344569999999999999999754

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.69  E-value=3.9e-05  Score=56.30  Aligned_cols=75  Identities=16%  Similarity=0.226  Sum_probs=48.6

Q ss_pred             CCCceEEccCCcEEEEEEEEeecCCeEEEEECCE--E---cc-----------CCCCceEEEcCCCCeEEEEECcCCCCC
Q psy16852        111 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKE--E---IL-----------PDNGHTMEFNPTTGECVLSISEATPQD  174 (579)
Q Consensus       111 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~---~~-----------~~~~~~~~~~~~~~~~~l~i~~~~~~d  174 (579)
                      .|....+.+|+.++|.|.... ....+.||+...  .   +.           .................|.|.++..+|
T Consensus         4 sP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   82 (112)
T d2cdeb1           4 TPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH   82 (112)
T ss_dssp             ECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred             CCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence            345567889999999998642 346899998321  1   00           001111111223345679999999999


Q ss_pred             CeEEEEEEEcCC
Q psy16852        175 EAVYSVKAVNTF  186 (579)
Q Consensus       175 ~G~Y~C~~~~~~  186 (579)
                      +|.|.|.+....
T Consensus        83 sa~YyCA~~~~~   94 (112)
T d2cdeb1          83 TSQYLCASSENI   94 (112)
T ss_dssp             CSEEEEEEECSS
T ss_pred             cccEEEEEecCC
Confidence            999999887543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.69  E-value=7.1e-05  Score=54.00  Aligned_cols=88  Identities=16%  Similarity=0.233  Sum_probs=49.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.+.|+...  .+.|++.    .++......         ..|.   ..+...+.-.....++.+..+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ----~PGkglewl---------~~i~---~~~~~~~y~~s~kgR~tis~D   73 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQ----TPEKRLEWV---------ASIN---NGGGRTYYPDTVKGRFTISRD   73 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTCCEEEE---------EEEC---TTSSCEECCTTTBTTEEEEEE
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeec----CCCcceeee---------eecC---ccccccccchhccEEEEEEec
Confidence            357789999999999987654  5789873    111111110         0111   111111100001122233333


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEeC
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                        .+...|.|.+++.+|++.|.|.....
T Consensus        74 ~s~nt~~L~i~~L~~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          74 NAKNTLYLQMSSLKSEDTAMYYCVRHEY  101 (123)
T ss_dssp             GGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CcccccccceeeeccCcccceeEEecCC
Confidence              34455999999999999999976543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.69  E-value=5.6e-05  Score=54.36  Aligned_cols=85  Identities=14%  Similarity=0.246  Sum_probs=47.9

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.++|+...  -+.|.+.    .+.......         -.|.   ..+...+.-.....++.+..|
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ----~PGkglewv---------~~i~---~~~~~~~Y~~s~kgRftiSrD   73 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQ----APGKEREGV---------AAMD---SGGGGTLYADSVKGRFTISRD   73 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEE----CTTSCCEEE---------EEEE---TTSCSCEECGGGTTTEEEECT
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccC----CCCCceeee---------eecC---CcccccccccceeEeEEEeec
Confidence            457889999999999986554  6789884    122111110         0111   111111111111122334443


Q ss_pred             --CCeeEEEEeecccccceeEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                        .+...|.|.+++.+|++.|.|..
T Consensus        74 ~s~~t~yLq~~~L~~eDtAvYYCAr   98 (121)
T d2p49b1          74 KGKNTVYLQMDSLKPEDTATYYCAA   98 (121)
T ss_dssp             TSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEEEEEeeeccccceeEEeeec
Confidence              33445999999999999999975

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.00023  Score=45.73  Aligned_cols=56  Identities=16%  Similarity=0.313  Sum_probs=42.6

Q ss_pred             CCCeEEEEEEEEccCCC--eEEEEECCEEeccCceEEeCCeEEEEEcccCCCCCeEEEEEEE
Q psy16852        225 KDSTVTLEAEYTGTPTP--EVKWFKNGKEIVSKDIETKDNVTKLVIKQTTKKTTGKYEIRVV  284 (579)
Q Consensus       225 ~g~~~~l~C~~~~~p~~--~v~W~~~~~~i~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~  284 (579)
                      .|..+.|+|.....+..  .-+|.|+|+.+....  .......+.|..  .+++|.|.|+..
T Consensus        11 ~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~--~~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          11 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA--LPGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             ETTEEEEEEEEESCSSCCCEEEEESSSEEEECTT--CCCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCCceeeeEEeeCCEEccccC--CCCCceEEEEec--CCCCceEEEEEc
Confidence            47888999998865443  679999999998754  234445677765  789999999965

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.67  E-value=0.00027  Score=50.23  Aligned_cols=66  Identities=18%  Similarity=0.375  Sum_probs=45.2

Q ss_pred             eeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEEEEeCC-----EEEEEEcCCCCCCCEEEEEEEEcCCe
Q psy16852         18 SHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLITTVES-----VSTLEIINPTKEDIGVYTCKATNIGG   86 (579)
Q Consensus        18 v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~g   86 (579)
                      +..|+..+|.|.+.|+ |. ..|.|.+||..+...........++     .+.|.|.   .+|...|+|.+.+..-
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFT---PEPSDIFSCIVTHEPD   87 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEEC---CCTTCCEEEEEEETTT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEe---cCCCCEEEEEEEeCCC
Confidence            3568999999999985 43 4899999999876544443333322     2445554   3455679999998744

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=4.4e-05  Score=55.33  Aligned_cols=65  Identities=14%  Similarity=0.241  Sum_probs=44.6

Q ss_pred             CCCeEEEEEEEEc-cCCC-eEEEEECCEEeccCceE----------EeCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        225 KDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDIE----------TKDNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       225 ~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~~~----------~~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      .+..++|.|.+.+ +|.. .|.|.+||+.+......          .+...+.|.|..-.......|+|.|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            3567899999998 4554 89999999987654311          1112245666655555567899999986644

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.67  E-value=5.5e-05  Score=54.88  Aligned_cols=85  Identities=11%  Similarity=0.188  Sum_probs=48.8

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+++|+++.|+|.+.|+...  .+.|.+.    .++.....            |..+...+...|.-.....+..+..
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ----~PGkglew------------~g~i~~~~~~~~ya~s~kgR~tiS~   72 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQ----APGQRFEW------------MGWINPYNGNKEFSAKFQDRVTFTA   72 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCCEE------------EEEECTTTCCEEECTTTTTTEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEe----CCCCccee------------eeecCccccccccchhccccceEec
Confidence            3457889999999999987655  6789883    12211111            0011111111111111122333444


Q ss_pred             e--CCeeEEEEeecccccceeEEEE
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCR  516 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~  516 (579)
                      |  .+...|.+.+++.+|++.|.|.
T Consensus        73 D~s~nt~yL~~~~L~~eDtAvYYCA   97 (127)
T d1n0xh1          73 DTSANTAYMELRSLRSADTAVYYCA   97 (127)
T ss_dssp             EGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             ccCceEEEEEEEccCCCCceEEEEE
Confidence            3  3445689999999999999996

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=8e-05  Score=52.40  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=24.3

Q ss_pred             CCCeEEEEEEEeeCCC--eEEEeeCCEEcCCC
Q psy16852        422 QSPATLKATVTGRPTP--SICWYRGKEEILPD  451 (579)
Q Consensus       422 g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~  451 (579)
                      ++.++|.|.+.|+-+.  .|+|+++|..+..+
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~   46 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQD   46 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGG
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCC
Confidence            5679999999996554  78999999987543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.7e-05  Score=56.07  Aligned_cols=74  Identities=19%  Similarity=0.194  Sum_probs=50.9

Q ss_pred             CCCeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEecc--CceEEeCCeEEEEEcccCCCCCeEEEEEEEc
Q psy16852        210 EAPTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVS--KDIETKDNVTKLVIKQTTKKTTGKYEIRVVN  285 (579)
Q Consensus       210 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~a~n  285 (579)
                      .+|.+...+.. .+..|++|+|.|... .+...+.++|+|.....  ...........+.|.+++..|+|.|+|....
T Consensus         3 PkP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           3 PKPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            35666555553 377899999999853 45558888998854321  1111112345799999999999999998753

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.65  E-value=0.00013  Score=52.99  Aligned_cols=87  Identities=14%  Similarity=0.200  Sum_probs=50.2

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|+++.|+|.+.|+...  .+.|.+.    .+......            |..+...+...|.-.....++.+..+
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ----~PGkglew------------ig~i~~~~~~~~ya~s~kgR~tiS~D   73 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVRQ----APGQGLEW------------MGRIITILDVAHYAPHLQGRVTITAD   73 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEEE----CTTSCCEE------------EEEEETTTTEEEECTTTTTTEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCccccee----CCCcceee------------eeecCCcccccccccceeEEEEEeec
Confidence            457889999999999987765  5688773    11111111            11111111111111111223334443


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEe
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                        .+...|.+.+++.+|++.|.|....
T Consensus        74 ~s~~t~yL~~~sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          74 KSTSTVYLELRNLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEEeeeeeccccCceEEEEeEEe
Confidence              3445689999999999999998654

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=5.9e-05  Score=53.99  Aligned_cols=77  Identities=22%  Similarity=0.368  Sum_probs=44.9

Q ss_pred             ecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        420 EAQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      ..++.++|.|.+.|+ |.. .|.|..++...    ..             .-.. .....|.|..              .
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~----~~-------------~~~~-~~~~~g~ys~--------------~   65 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS----GV-------------HTFP-AVLQSDLYTL--------------S   65 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCT----TE-------------EECC-CEEETTEEEE--------------E
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccC----Ce-------------Eecc-cccCCCCEEE--------------E
Confidence            357889999999985 433 89997765321    10             0011 1122355543              3


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeEEEEEE
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSVTCTAT  529 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  529 (579)
                      +.|+|..-+.. .+.|+|.|.+..+.......
T Consensus        66 S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~~~   96 (102)
T d1mjuh2          66 SSVTVTSSTWP-SQSITCNVAHPASSTKVDKK   96 (102)
T ss_dssp             EEEEECTTTTT-TSCCEEEEEEGGGTEEEEEE
T ss_pred             EEEEEehhHcC-CceEEEEEEECCCCEEEEEE
Confidence            44887777664 57899999998766554433

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.64  E-value=0.00016  Score=50.90  Aligned_cols=88  Identities=16%  Similarity=0.231  Sum_probs=48.5

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.++|+...  -+.|.+.    .+.......         -.|....... ..+.-.....++.+..|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ----~PGkglEw~---------g~i~~~~~~~-~~~ya~~~kgR~tiS~D   75 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQ----APGKGLEWV---------ARIRSKGFNF-ATYYADSVRDRFTISRD   75 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCEEEE---------EEECCGGGTT-CEEECTTTTTTEEEEEE
T ss_pred             CeECCCCCeEEEEEECCCccccccccccee----CCCcceecc---------cccccccccc-cceeccccccCceeccc
Confidence            457889999999999986654  6889873    122111110         0111111111 01100011122334443


Q ss_pred             --CCeeEEEEeecccccceeEEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                        .+...|.|.+++.+|++.|.|.-.
T Consensus        76 ~s~~t~~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          76 DSQSMLYLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccceeEecccCCCHhHCEEEEEEEc
Confidence              344568999999999999999743

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.64  E-value=0.00011  Score=51.88  Aligned_cols=31  Identities=19%  Similarity=0.288  Sum_probs=21.3

Q ss_pred             ecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCC
Q psy16852        420 EAQSPATLKATVTGRPTP--SICWYRGKEEILP  450 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~  450 (579)
                      ..|+..+|.|.+.|+-+.  .|.|+++|..+..
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~   46 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETA   46 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCC
Confidence            346778999999986443  8999999987643

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.64  E-value=0.00017  Score=52.09  Aligned_cols=87  Identities=13%  Similarity=0.251  Sum_probs=49.6

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.++|+...  .+.|++.    .++.....            |..+.......+.-.....++.+..|
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ----~PGkglew------------l~~i~~~~~~~~Y~~s~kgRftiSrD   73 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQ----APEKGLEW------------VAYISSGGSSINYADTVKGRFTISRD   73 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE----CSSSCEEE------------EEEECSSSSCEEECGGGTTTEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEcccc----CCCcceee------------eeecCcccccccccceeeeeEEEecc
Confidence            346789999999999987654  6789884    12221111            11111111111111111223334433


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEe
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                        .+...|.|.+++.+|++.|.|...+
T Consensus        74 ~s~~t~yL~m~sL~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          74 NPKNTLFLQMTSLRSEDTAIYYCTRGG  100 (122)
T ss_dssp             GGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCccEeEeeeeeecccCceEEEeecCC
Confidence              3445699999999999999997543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.64  E-value=3.2e-05  Score=56.01  Aligned_cols=82  Identities=13%  Similarity=0.244  Sum_probs=46.2

Q ss_pred             eeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCee--EEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        418 IAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHT--MEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       418 ~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      .+++|++++|+|.+.|....  .+.|++.    .++....  ..+...++..     .-.+.-.|++         .+..
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ----~PGkgle~l~~i~~~~~~~-----~y~~~~~gR~---------tis~   72 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQ----NHGKSLEWIGNFHPYSDDT-----NYNEKFKGKA---------KLTV   72 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEE----ETTSCCEEEEEEETTTTEE-----CCCTTTTTTE---------EEEE
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeee----cCCCcceEeeccCCccccc-----chhhhhcccc---------eeec
Confidence            57789999999999986543  6899984    1111111  1111111100     0000111222         2322


Q ss_pred             --eCCeeEEEEeecccccceeEEEEE
Q psy16852        494 --DGNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       494 --~~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                        +.+...|.|.+++.+|++.|.|..
T Consensus        73 d~s~~~~~L~i~~L~~eDsAvYYCA~   98 (119)
T d1qnzh_          73 EKSSSTVYLEFSRLTSDDSAVYYCAI   98 (119)
T ss_dssp             ETTTTEEEEEEEEECGGGCEEEEEEE
T ss_pred             ccccceeeeeecccCccceeEEEEEE
Confidence              334456999999999999999954

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.63  E-value=0.00013  Score=53.14  Aligned_cols=87  Identities=13%  Similarity=0.213  Sum_probs=50.2

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|.|.++|+...  .+.|.+.    .+......            |..+.......|.-.....+..+..|
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ----~PGkglEw------------~~~i~~~~~~~~y~~~~kgR~Tis~D   73 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQ----APGKGLEW------------VAIIWDDGSDQHYADSVKGRFTISRN   73 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCEEE------------EEEECTTSSCEEECGGGBTTEEEEEE
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeec----CCCcceee------------eeecccccccchhcccccceEEEecc
Confidence            346789999999999986554  6789883    12211111            11111111112211122223344444


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEe
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                        .+...|.|.+++.+|++.|.|....
T Consensus        74 ~s~~t~yL~~~~L~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          74 DSKNTLFLQMDSLRPEDTGVYFCARDG  100 (127)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCccEEEeeeeeeeecceeEEEEEEec
Confidence              3445699999999999999997643

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00012  Score=51.37  Aligned_cols=69  Identities=19%  Similarity=0.142  Sum_probs=43.8

Q ss_pred             cCCcEEEEEEEEeecC--CeEEEEECCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcCCc
Q psy16852        119 AQSPATLKATVTGRPT--PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNTFG  187 (579)
Q Consensus       119 ~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  187 (579)
                      .|+.++|.|.+.|+-+  ..|+|++++..+.............+.-.......+...+...|+|.+.+...
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCC
Confidence            4778999999988643  59999999987654332222222222222233333455666789999988643

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=7.2e-05  Score=53.40  Aligned_cols=75  Identities=24%  Similarity=0.354  Sum_probs=46.2

Q ss_pred             ecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCe
Q psy16852        420 EAQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNR  497 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~  497 (579)
                      ..++.++|.|.+.|+ |.. .|.|.+++....    ..            .....  ...|.|+.              .
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~----~~------------~~~~~--~~~g~~s~--------------~   65 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSG----VL------------TVSAV--LQSGLYTL--------------S   65 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTT----EE------------ECCCE--EETTEEEE--------------E
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCccc----ce------------eeeee--cCCCCEEE--------------E
Confidence            357899999999985 443 899988764321    00            00111  12345532              3


Q ss_pred             eEEEEeecccccceeEEEEEEeCCeeEEEE
Q psy16852        498 SVLLISKITRDQIGDVTCRAENVAGSVTCT  527 (579)
Q Consensus       498 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  527 (579)
                      +.|+|..-... .|.|+|.+.+..+.....
T Consensus        66 S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~   94 (101)
T d1kcvh2          66 SNTTVASGTWP-SASVTCLVAHPKSSTAAD   94 (101)
T ss_dssp             EEEEEETTTTT-TSCCEEEEEEGGGTEEEE
T ss_pred             EEEEEchhhcC-CCeEEEEEEeCCCCeeeE
Confidence            44877766664 578999999876665443

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.63  E-value=8.2e-05  Score=54.17  Aligned_cols=86  Identities=15%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|+++.|+|.+.|+...  .+.|.+.    .+.......         ..|.   ..+...|.-.....++.+..|
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ----~PGkglewl---------~~i~---~~~~~~~y~~~~kgR~tis~D   72 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQ----APGKEREGV---------AVID---TGRGNTAYADSVQGRLTISLD   72 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEE----CTTSCCEEE---------EEEE---TTTCCEEECTTTTTTEEEEEE
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeee----CCCcceEee---------eccc---cccccccccccceeeEEEEec
Confidence            457789999999999986655  6789883    122111110         0111   111111100011112334443


Q ss_pred             --CCeeEEEEeecccccceeEEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                        .+...|.|.+++.+|++.|.|...
T Consensus        73 ~s~~~~~L~i~~l~~eDTAvYYCAr~   98 (126)
T d1rjca1          73 NAKNTLYLQMNSLKPEDTAMYYCAAD   98 (126)
T ss_dssp             C--CEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCceEEEEEEeccCcccCceeEEEee
Confidence              333459999999999999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.62  E-value=0.00017  Score=52.29  Aligned_cols=86  Identities=15%  Similarity=0.216  Sum_probs=49.5

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+++|+++.|+|.+.|+...  .+.|.+.    .+......            |..+...+...|.-.....++.+..
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ----~PGkglEw------------vg~i~~~~~~~~y~~s~kgRfTiS~   71 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVKQ----RPGHGLEW------------IGKILPGGGSNTYNDKFKGKATFTA   71 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEEE----CTTSCEEE------------EEEEETTTTEEEECGGGTTTEEEEE
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCcceee----CCCcccee------------eeecCccccchhhhhhhccceEEEe
Confidence            3457889999999999997655  6788873    22221111            0111111111111111122333443


Q ss_pred             e--CCeeEEEEeecccccceeEEEEE
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                      |  .+...|.+.+++.+|++.|.|..
T Consensus        72 D~s~nt~yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          72 DTSSNIAYMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCCccEEEeeecccCCCcceEEEEee
Confidence            3  45566999999999999999964

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=9.2e-05  Score=53.14  Aligned_cols=79  Identities=15%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             CCceeeecCCCeEEEEEEEee-CC---CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeeccee
Q psy16852        414 LKPVIAEAQSPATLKATVTGR-PT---PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTET  489 (579)
Q Consensus       414 ~~~~~~~~g~~~~l~C~~~g~-p~---~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~  489 (579)
                      |....+..++.++|.|.+.|+ |.   .++.|++++...........                .....|.|..       
T Consensus         8 Ps~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~----------------~~~~~gt~s~-------   64 (103)
T d1fp5a1           8 PSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKE----------------EKQRNGTLTV-------   64 (103)
T ss_dssp             CCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEE----------------EEETTTEEEE-------
T ss_pred             cCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEccc----------------EECCCCCEEE-------
Confidence            344445668889999999985 44   26778888766533221111                1122344533       


Q ss_pred             eeeeeCCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        490 KIMTDGNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       490 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                             .+.|.|..-+.+....|+|.|.+..-
T Consensus        65 -------~S~L~v~~~~w~~g~~~tC~V~H~~l   90 (103)
T d1fp5a1          65 -------TSTLPVGTRDWIEGETYQCRVTHPHL   90 (103)
T ss_dssp             -------EEEEECCHHHHHTTCCEEEEEECSSC
T ss_pred             -------EEEEEEcHHHhCCCCeEEEEEEECCC
Confidence                   33477776666667789999988643

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=9.1e-05  Score=53.47  Aligned_cols=76  Identities=14%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             eecCCCeEEEEEEEee-CC---CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        419 AEAQSPATLKATVTGR-PT---PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-p~---~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ...++.++|.|.+.|+ |.   ..+.|.+++..+.....                ........|.|+....         
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~----------------~~~~~~~~gtys~~S~---------   69 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT----------------KPREEQYNSTYRVVSV---------   69 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE----------------CCCEECTTSCEEEEEE---------
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEE----------------CCcEECCCCcEEEEEE---------
Confidence            4568899999999985 43   37789999987744211                1223344566655433         


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCeeE
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAGSV  524 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  524 (579)
                           |.|..-+.+..-.|+|.+.+.....
T Consensus        70 -----L~v~~~~W~~g~~ytC~V~H~~l~~   94 (105)
T d1l6xa1          70 -----LTVLHQDWLNGKEYKCKVSNKALPA   94 (105)
T ss_dssp             -----EECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             -----EEEcHHHcCCCCEEEEEEEeCCCCC
Confidence                 7777777666778999999875543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.62  E-value=0.00045  Score=49.29  Aligned_cols=88  Identities=16%  Similarity=0.215  Sum_probs=50.5

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee-
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT-  493 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~-  493 (579)
                      ..+++|++++|+|.++|+...  .+.|++.    .++..-..         ...|.   ..+.-.| -.....+..+.. 
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ----~PGkglEw---------lg~i~---~~~~~~y-~~~~kgR~tis~D   72 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQ----PPGRGLEW---------IGYVF---YTGTTLL-DPSLRGRVTMLVN   72 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEE----CTTSCCEE---------EEEEC---TTSCEEE-CGGGTTTEEEEEE
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceE----CCCCccee---------eeeec---cccccee-ccceeecceeecc
Confidence            457789999999999987655  6889883    11111111         01111   1111111 011112233433 


Q ss_pred             -eCCeeEEEEeecccccceeEEEEEEeCC
Q psy16852        494 -DGNRSVLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       494 -~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                       +.+...|.|.+++.+|++.|.|......
T Consensus        73 ~s~~~~~L~i~~L~~eDtAvYyCAr~~~~  101 (116)
T d7fabh1          73 TSKNQFSLRLSSVTAADTAVYYCARNLIA  101 (116)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             cchhhhhccccccccccceEEEeeeecCC
Confidence             3445679999999999999999765443

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=7.3e-05  Score=52.52  Aligned_cols=85  Identities=12%  Similarity=0.196  Sum_probs=41.9

Q ss_pred             cCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee--eCC
Q psy16852        421 AQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT--DGN  496 (579)
Q Consensus       421 ~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~--~~~  496 (579)
                      +|++++|+|.++|+...  -+.|++..    +.......         ..|.   ..+...+.-.....+..+..  +.+
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~----PGkglEwl---------~~i~---~~~~~~~y~~~~~~R~tiS~D~s~~   64 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQR----PGRGLEWI---------GRID---PNGGGTKYNEKFKSKATLTVDKPSS   64 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC--------CEEE---------EEEC-------CEEECTTTTTTEEEEC----C
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeC----CCCceEee---------eecc---ccccccccccceeeceEEecccccc
Confidence            48999999999987654  68999842    11111110         0011   01000110000111222332  244


Q ss_pred             eeEEEEeecccccceeEEEEEEeCC
Q psy16852        497 RSVLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                      ...|.|.+++.+|++.|.|......
T Consensus        65 t~~L~~~sL~~eDTAvYYCAr~~~~   89 (103)
T d1oari_          65 TAYMQLSSLTSEDSAVYYCARMWYY   89 (103)
T ss_dssp             EEEEEECCC---CCSEEEEEEEECS
T ss_pred             EEEeeeeeccccccEEEEeEEECCC
Confidence            5569999999999999999765443

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.59  E-value=0.00013  Score=52.63  Aligned_cols=86  Identities=15%  Similarity=0.294  Sum_probs=48.8

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|+++.|+|.+.|+...  -+.|.+.    .++......         -.|.   ..+...+.-.....+..+..|
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ----~PGkglewl---------g~i~---~~~~~~~y~~~~kgR~tis~D   73 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQ----APGKEREIV---------SAVS---GSGGSTYYADSVRGRFTISRD   73 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCCEEE---------EEEC---TTSCCEEECGGGTTTEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEccee----CCCcceeee---------eecC---CcccccccchheeeeeEEecc
Confidence            347789999999999986544  5789874    122211110         0111   111111111111123344443


Q ss_pred             --CCeeEEEEeecccccceeEEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                        .+...|.|.+++.+|++.|.|...
T Consensus        74 ~s~~~~~L~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          74 NSKNTLYLQMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             ccceeEEeeeeecccccceEEEEEEe
Confidence              344569999999999999999654

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.58  E-value=7.7e-05  Score=54.39  Aligned_cols=87  Identities=16%  Similarity=0.302  Sum_probs=49.6

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|+++.|+|.++|+...  -+.|.+.    .++.....            |..+...+...|.-.....++.+..|
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ----~PGkgLEW------------lg~I~~~~~~~~Ya~s~kgRfTiSrD   73 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQ----APGKGLEW------------VSTINPGDGSTYYADSVKGRFTISRD   73 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEE----CSSCCCEE------------EEEECSSSCCEEECSTTTTTEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceecccc----CCCCceee------------eeccCCccccccccccceEeEEEecc
Confidence            357789999999999987654  6889873    11111111            01111111111111111223334443


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEe
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                        .+...|.|.+++.+|++.|.|....
T Consensus        74 ~s~~t~yL~i~~L~~eDTAvYYCAr~~  100 (135)
T d1ieha_          74 NAKNTLYLQMNSLKSEDTAVYYCAKYS  100 (135)
T ss_dssp             TTTCCEEEEEESCCSSSCEEEEEEEBS
T ss_pred             CCCceeEecEeeeCcccceeeEEEEec
Confidence              3445699999999999999997643

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.58  E-value=6.3e-05  Score=54.87  Aligned_cols=87  Identities=14%  Similarity=0.253  Sum_probs=49.4

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+++|++++|+|.++|+...  .+.|.+.    .+......            |..+...+...|.-.....+..+..
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ----~PGkglew------------v~~i~~~~~~~~y~~s~kgR~tiS~   72 (130)
T d1rzga1           9 AEVKKPGSSVKVSCKASGGTFSNYAINWVRQ----APGQGLEW------------MGGIIPIFNIAHYAQRFQGRVSITA   72 (130)
T ss_dssp             CEEECTTCCEEEEEECCSSCGGGCCEEEEEE----CTTCCCEE------------EEEEETTTTEEEECGGGBTTEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceEcccc----CCCcceee------------eeeccccccccccccccccceEEec
Confidence            3457889999999999986554  6889883    12211111            1111111111111111112333444


Q ss_pred             eC--CeeEEEEeecccccceeEEEEEE
Q psy16852        494 DG--NRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       494 ~~--~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      |.  +...|.+.+++.+|++.|.|...
T Consensus        73 D~s~~t~yL~~~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          73 DESTSTAYMELSSLRSEDTAVFYCASP   99 (130)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             ccccceEEeeeeecCCCccEEEEEEEe
Confidence            43  33458899999999999999864

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.58  E-value=0.00013  Score=52.76  Aligned_cols=86  Identities=15%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+++|+++.|+|.+.|+..-  .+.|++.    .++.....            |..+...+...+.-.....+..+..
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ----~PGkglew------------ig~i~~~~~~~~ya~s~kgR~tiSr   72 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTSGYSFSDYWIGWVRQ----MPGKGLEW------------MGIFYPGDSDSRYSPSFEGQVTMSA   72 (124)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCEEE------------EEEEETTTTEEEECTTTTTTCEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCcCcccee----CCCcceee------------eeecCcccccccccccceeeEEEee
Confidence            3457889999999999987654  5789873    22221111            1111111111111111222333444


Q ss_pred             e--CCeeEEEEeecccccceeEEEEE
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                      |  .+...|.+.+++.+|++.|.|..
T Consensus        73 D~s~~t~yL~~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          73 DRSTNTAHLQWSSLKPSDTALYYCAR   98 (124)
T ss_dssp             ETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCcEEEEeeeccccccceEEEEee
Confidence            3  33456899999999999999953

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.58  E-value=0.0001  Score=51.69  Aligned_cols=76  Identities=20%  Similarity=0.372  Sum_probs=47.1

Q ss_pred             CCCccccccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEE--EEEe-CC----EEEEEEcCCCCCCCE
Q psy16852          5 LAPRFIEKIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYL--ITTV-ES----VSTLEIINPTKEDIG   75 (579)
Q Consensus         5 ~~p~~~~~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~--~~~~-~~----~~~L~i~~~~~~d~G   75 (579)
                      +||.+.....+   ..++.++|.|.+.++ |. ..++|.+||..+..+....  .... ++    .+.|.+.   .+|..
T Consensus         2 vpP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~   75 (94)
T d1hyrc1           2 VPPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQ   75 (94)
T ss_dssp             BCCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGG
T ss_pred             cCCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCC
Confidence            57776654333   235678999999985 43 4899999999886543221  1111 11    2344444   34445


Q ss_pred             EEEEEEEcCCe
Q psy16852         76 VYTCKATNIGG   86 (579)
Q Consensus        76 ~Y~C~~~~~~g   86 (579)
                      .|+|++.+...
T Consensus        76 ~ytC~V~H~~~   86 (94)
T d1hyrc1          76 RFTCYMEHSGN   86 (94)
T ss_dssp             GEEEEEEETTE
T ss_pred             EEEEEEEECCC
Confidence            79999988644

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.57  E-value=0.00023  Score=51.63  Aligned_cols=70  Identities=21%  Similarity=0.428  Sum_probs=48.5

Q ss_pred             ceEEccCCcEEEEEEEEeecC----CeEEEEEC--CEEc------c--------C--CCCceEEEcCCCCeEEEEECcCC
Q psy16852        114 PVIAEAQSPATLKATVTGRPT----PSICWYRG--KEEI------L--------P--DNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       114 ~~~~~~g~~~~l~C~~~~~p~----~~i~W~~~--~~~~------~--------~--~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      ...+++|++++|.|.++|+..    ..+.||+.  ++.+      .        .  ..++.+..+.......|.|.+++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            344678999999999887532    46889973  2110      0        0  12344444555567889999999


Q ss_pred             CCCCeEEEEEEE
Q psy16852        172 PQDEAVYSVKAV  183 (579)
Q Consensus       172 ~~d~G~Y~C~~~  183 (579)
                      .+|++.|.|...
T Consensus        89 ~eDsAvYyCAr~  100 (120)
T d2agjh1          89 PVDTATYYCART  100 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             eccceEEeeEec
Confidence            999999999644

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.57  E-value=0.00039  Score=50.80  Aligned_cols=89  Identities=16%  Similarity=0.245  Sum_probs=49.1

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccc--cCCCceeEEEEeecceeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEA--TPQDEAVYSVKASSTETKIM  492 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~--~~~d~g~y~c~~~~~~~~~~  492 (579)
                      ..+++|++++|+|.++|+...  .+.|++.    .++......         -.|..-  ...+...+.-.....+..+.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ----~PGkglewl---------~~I~~~~~~~~~~~~~y~~~~kgR~tis   76 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQ----APGKERIYL---------ATIGRNLVGPSDFYTRYADSVKGRFAVS   76 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEE----CTTSCCEEE---------EEEEEEESSSSCEEEEECTTTBTTEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeee----CCccceeEE---------EEEccccccCCCCcceechhhccceeEe
Confidence            456789999999999987544  6889884    111111110         011111  11111000000001122333


Q ss_pred             e--eCCeeEEEEeecccccceeEEEEEE
Q psy16852        493 T--DGNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       493 ~--~~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      .  +.+...|.|.+++.+|++.|.|.+.
T Consensus        77 ~d~s~~~~~L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          77 RDNAKNTVNLQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             EEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccCCceEEEEeeecccccceeEEEEEEE
Confidence            3  3455679999999999999999865

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0002  Score=51.45  Aligned_cols=81  Identities=11%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             eecCCCeEEEEEEEee-CCC-eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852        419 AEAQSPATLKATVTGR-PTP-SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN  496 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~  496 (579)
                      ....+.++|.|.+.|+ |.. .|+|.++|..+.....               -.. .....|.|.-              
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~---------------~~~-~~~~~gtys~--------------   67 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTR---------------GFP-SVLRGGKYAA--------------   67 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEE---------------ECC-CEEETTEEEE--------------
T ss_pred             cCCCCceEEEEEEecccCCcEEEEEEECCccccCCEE---------------cce-EEccCCCEEE--------------
Confidence            3456789999999985 543 8999998876532210               000 1112344432              


Q ss_pred             eeEEEEeecccc--cceeEEEEEEeCCeeEEEEEE
Q psy16852        497 RSVLLISKITRD--QIGDVTCRAENVAGSVTCTAT  529 (579)
Q Consensus       497 ~~~l~i~~~~~~--d~G~Y~C~a~n~~g~~~~~~~  529 (579)
                      .+.|+|...+..  ....|+|.|.+..+.....+.
T Consensus        68 ~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~~~v~  102 (105)
T d1dn0b2          68 TSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVP  102 (105)
T ss_dssp             EEEEEECTTCC---CCCEEEEEEECTTCCEEEEEE
T ss_pred             EEEEEEcHHHhccCCCCEEEEEEEECCCCEEeEEe
Confidence            234777666553  224799999998776655543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.57  E-value=0.00017  Score=52.34  Aligned_cols=87  Identities=15%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|+++.|+|.++|+...  -+.|.+.    .+.......         -.|.   ..+...|.-.....+..+..|
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ----~PGkglew~---------g~i~---~~~~~~~y~~s~kgR~tiSrD   73 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQ----APGRGLEWM---------GGVI---PLLTITNYAPRFQGRITITAD   73 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEE----CTTCCEEEE---------EEEE---GGGTEEEECGGGTTTEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEe----CCCCcceee---------eccC---cccccccccceeeeeEEEecc
Confidence            346789999999999986554  5789873    222111110         0111   111111111111122334433


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEe
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                        .+...|.+.+++.+|++.|.|....
T Consensus        74 ~s~~t~yL~~~sL~~eDTavYYCAR~~  100 (127)
T d2fx7h1          74 RSTSTAYLELNSLRPEDTAVYYCAREG  100 (127)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CccceEeeeecccCcccceEEEEeecc
Confidence              3445699999999999999997643

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=0.0002  Score=51.07  Aligned_cols=70  Identities=19%  Similarity=0.386  Sum_probs=51.0

Q ss_pred             CceEEccCCcEEEEEEEEeecC--CeEEEEEC--CEE------cc--------C--CCCceEEEcCCCCeEEEEECcCCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRPT--PSICWYRG--KEE------IL--------P--DNGHTMEFNPTTGECVLSISEATP  172 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~--~~~------~~--------~--~~~~~~~~~~~~~~~~l~i~~~~~  172 (579)
                      .+..+++|++++|+|.++|+..  -.+.|++.  ++.      +.        +  ..++.+..+.......|.|.+++.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~   87 (117)
T d1c5db1           8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (117)
T ss_dssp             CCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc
Confidence            4456789999999999987654  47788873  111      11        1  135556666666778999999999


Q ss_pred             CCCeEEEEEE
Q psy16852        173 QDEAVYSVKA  182 (579)
Q Consensus       173 ~d~G~Y~C~~  182 (579)
                      +|++.|.|..
T Consensus        88 eDtAvYYCAr   97 (117)
T d1c5db1          88 EDTAIYFCTR   97 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEec
Confidence            9999999954

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.56  E-value=0.00022  Score=51.58  Aligned_cols=86  Identities=14%  Similarity=0.208  Sum_probs=49.5

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.+.|+...  .+.|++.    .+......            |..+...+...|.-.....++.+..|
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ----~PGkglEw------------v~~i~~~~~~~~Y~~s~kgRftiSrD   73 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRR----VPGGGLEW------------VASISTSSTYRDYADAVKGRFTVSRD   73 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCEEE------------EEEECGGGCCEEECTTTTTTEEEEEE
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCcccc----CCCcceee------------eeecCccccccccccccccceEEecc
Confidence            457889999999999986544  6889883    22221111            01111111111111111223334443


Q ss_pred             --CCeeEEEEeecccccceeEEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                        .+...|.|.+++.+|++.|.|...
T Consensus        74 ~s~~t~~Lqm~sL~~eDTAvYYCAr~   99 (125)
T d1op3h1          74 DLEDFVYLQMHKMRVEDTAIYYCARK   99 (125)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccceEeeeeeccCCccceeEeEeec
Confidence              345668999999999999999764

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.55  E-value=0.00036  Score=50.03  Aligned_cols=88  Identities=18%  Similarity=0.308  Sum_probs=48.4

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.++|+...  .+.|++.    .++.....         ...|.... .+...|--.....++.+..+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ----~PGkglEw---------v~~i~~~~-~~~~~~ya~s~kgRftiS~D   75 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQ----SPEKGLEW---------VAEIRNKA-NNHATYYAESVKGRFTISRD   75 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEE----ETTTEEEE---------EEEECCGG-GTTCEEECTTTTTTEEEEEE
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeee----CCCcceee---------eeeccccc-cccceeechhceecceeecc
Confidence            347789999999999987654  6889883    11111110         00111110 11111111111122334333


Q ss_pred             --CCeeEEEEeecccccceeEEEEEE
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                        .+...|.|.+++.+|++.|.|...
T Consensus        76 ~s~n~~~L~~~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          76 DSKRRVYLQMNTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccceeccceeeccCCCceEEEeeEe
Confidence              344669999999999999999654

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00015  Score=50.32  Aligned_cols=69  Identities=16%  Similarity=0.298  Sum_probs=53.3

Q ss_pred             CCceEEccCCcEEEEEEEEeecCCeEEEEE-CCEEccCCCCceEEEcCCCCeEEEEECcCCCCCCeEEEEEEEcC
Q psy16852        112 LKPVIAEAQSPATLKATVTGRPTPSICWYR-GKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKAVNT  185 (579)
Q Consensus       112 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  185 (579)
                      +..+.+.+|+++.|.|.++ .|..+++-++ .+..+.. ....+..++..|   ++|.++...+.|.|.|.+...
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p-~g~~v~~Dpk~G---f~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIP-DGKRIIWDSRKG---FIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECC-CSSSEEEETTTE---EEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCC-CCCEEEECCCCC---EEEeCCCcccCeEEEEEEEEC
Confidence            4457789999999999997 5777665544 6665554 335566677666   899999999999999999765

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=8.6e-05  Score=53.77  Aligned_cols=64  Identities=13%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             CCeEEEEEEEEc-cCCC-eEEEEECCEEeccCceEE----------eCCeEEEEEcccCCCCCeEEEEEEEcCCee
Q psy16852        226 DSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKDIET----------KDNVTKLVIKQTTKKTTGKYEIRVVNEAGE  289 (579)
Q Consensus       226 g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~~~~----------~~~~~~l~i~~~~~~d~G~y~C~a~n~~g~  289 (579)
                      +..++|.|.+.+ +|.. .|+|.+||..+.......          +...+.|.|..-..+....|+|+|.+....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS   95 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            578999999998 4554 899999998776543111          122356667665555666899999987644

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.0002  Score=51.33  Aligned_cols=75  Identities=17%  Similarity=0.278  Sum_probs=46.9

Q ss_pred             cCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCCee
Q psy16852        421 AQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGNRS  498 (579)
Q Consensus       421 ~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~  498 (579)
                      .++.++|.|.+.|+-+.  .|+|.+++...    .             ....+..+...|.|...              +
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~----~-------------~~t~~~~~~~~gtys~~--------------S   67 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTS----G-------------VHTFPAVLQSSGLYSLS--------------S   67 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCT----T-------------EEECCCEECTTSCEEEE--------------E
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCC----C-------------EEECCCeECCCCCEEEE--------------E
Confidence            46789999999985433  89998776321    1             11122233344566433              3


Q ss_pred             EEEEeecccccceeEEEEEEeCCeeEEEE
Q psy16852        499 VLLISKITRDQIGDVTCRAENVAGSVTCT  527 (579)
Q Consensus       499 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  527 (579)
                      .|+|..-... ...|+|.+.+..+.....
T Consensus        68 ~L~v~~~~w~-~~~ytC~V~H~~~~~~v~   95 (103)
T d1c5ch2          68 VVTVPSSSLG-TQTYICNVNHKPSNTKVD   95 (103)
T ss_dssp             EEEEEGGGGG-TCCCEEEEEEGGGTEEEE
T ss_pred             EEEECccccC-CCeEEEEEEeCCCCEEEE
Confidence            4777766553 467999999987765443

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00013  Score=54.00  Aligned_cols=27  Identities=11%  Similarity=0.196  Sum_probs=22.4

Q ss_pred             eeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        493 TDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       493 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .+.....|+|.+++.+|+|.|.|.+..
T Consensus        72 ~~~~~~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          72 LGNESVTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             ECSSEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             CCCCeEEEEECCCCcccCeEEEEEEec
Confidence            345566799999999999999998753

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=0.00039  Score=49.54  Aligned_cols=73  Identities=11%  Similarity=0.263  Sum_probs=46.9

Q ss_pred             ecCCCeEEEEEEEee-CCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeeeCC
Q psy16852        420 EAQSPATLKATVTGR-PTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTDGN  496 (579)
Q Consensus       420 ~~g~~~~l~C~~~g~-p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~  496 (579)
                      ..++.++|.|.+.|+ |..  .+.|.+++..+..                 ..........|.|+..             
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~-----------------~~~~~~~~~~gtys~~-------------   66 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITT-----------------VNFPPALASGGRYTMS-------------   66 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEE-----------------EECCCEECSSSCEEEE-------------
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCce-----------------eEeeeEecCCCCEEEE-------------
Confidence            357889999999995 553  5778887644311                 0112223344566433             


Q ss_pred             eeEEEEeecccccceeEEEEEEeCCee
Q psy16852        497 RSVLLISKITRDQIGDVTCRAENVAGS  523 (579)
Q Consensus       497 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~  523 (579)
                       +.|.|...+......|+|.|.+....
T Consensus        67 -S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          67 -NQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             -EEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             -EEEEEeHHHccCCCEEEEEEEECCCC
Confidence             44888888777677899999876443

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.53  E-value=0.00015  Score=52.44  Aligned_cols=44  Identities=18%  Similarity=0.104  Sum_probs=30.7

Q ss_pred             CCeeec-CCCceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCC
Q psy16852        407 APKFTK-PLKPVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILP  450 (579)
Q Consensus       407 ~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~  450 (579)
                      +|.+.. ++.......+..++|.|.+.|+-+.  .|.|+++|..+..
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~   54 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTIL   54 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCC
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccC
Confidence            444443 3344446667889999999985443  8999999887643

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.53  E-value=0.00024  Score=50.83  Aligned_cols=87  Identities=16%  Similarity=0.246  Sum_probs=49.3

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +..+++|++++|+|.+.|+...  .+.|.+.    .+......            |..+...+...|.-.....++.+..
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ----~PGkglEw------------vg~i~~~~~~~~y~~s~kgRftiS~   72 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQ----APGQGLEW------------IGWIDPGSGNTKYNEKFKGRATLTV   72 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE----CTTSCEEE------------EEEEETTTTEEEECGGGBTTEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccccceE----CCCcccee------------eeecCCcccceeeccceeeeEEEEe
Confidence            3457889999999999987655  6788873    22221111            1111111111111111112233333


Q ss_pred             e--CCeeEEEEeecccccceeEEEEEE
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      +  .+...|.+.+++.+|++.|.|...
T Consensus        73 D~s~nt~~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          73 DTSTNTAYMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCcceEEeccccccCCCcceEEEEEEc
Confidence            3  345668999999999999999653

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00017  Score=51.84  Aligned_cols=85  Identities=12%  Similarity=0.096  Sum_probs=47.3

Q ss_pred             CCcc-ccccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEE-EEEeCC----EEEEEEcCCCCC--CCE
Q psy16852          6 APRF-IEKIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYL-ITTVES----VSTLEIINPTKE--DIG   75 (579)
Q Consensus         6 ~p~~-~~~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~-~~~~~~----~~~L~i~~~~~~--d~G   75 (579)
                      +|.+ .+.|........+.++|.|.+.++ |. ..|+|.++|..+....... ....++    .+.|.|..-...  ...
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~   84 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDE   84 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCC
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCC
Confidence            4444 334444445567899999999985 43 4899999997664321100 011222    245666554432  224


Q ss_pred             EEEEEEEcCCeeeEE
Q psy16852         76 VYTCKATNIGGVATC   90 (579)
Q Consensus        76 ~Y~C~~~~~~g~~~~   90 (579)
                      .|+|.+.+..+....
T Consensus        85 ~ytC~V~H~~~~~~~   99 (105)
T d1dn0b2          85 HVVCKVQHPNGNKEK   99 (105)
T ss_dssp             EEEEEEECTTCCEEE
T ss_pred             EEEEEEEECCCCEEe
Confidence            799999987665444

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.52  E-value=0.00027  Score=50.69  Aligned_cols=89  Identities=17%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      +..+++|++++|+|.++|+...  .+.|.+.    .++......         -.|.. ...+...+.-.....+..+..
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ----~PGkglEwv---------~~i~~-~~~~~~t~Ya~s~kgR~tiSr   74 (121)
T d1nfdf1           9 GDLVQPGSSLKVSCAASGFTFSDFWMYWVRQ----APGKGLEWV---------GRIKN-IPNNYATEYADSVRGRFTISR   74 (121)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGEEEEEEEE----CTTSCEEEE---------EEECC-TTTTTCEEECGGGTTTBCCEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceeecee----cCCccceee---------eeecc-cccccccccchheeeeeEEcc
Confidence            3457899999999999987655  5688873    111111110         01111 111111111112222334444


Q ss_pred             e--CCeeEEEEeecccccceeEEEEEE
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCRAE  518 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~a~  518 (579)
                      |  .+...|.+.+++.+|++.|.|...
T Consensus        75 D~s~nt~yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          75 DDSRNSIYLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             CTTTSEEEEEEESCCGGGCEECEEEEE
T ss_pred             ccccceeeceecccCCCcceEEEEecc
Confidence            3  345559999999999999999754

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.51  E-value=0.00013  Score=51.21  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=48.5

Q ss_pred             CeEeccCCceeeCCCCeEEEEEEEEccCCCeEEEEECCEEeccCc--eEEe--CCeEEEEEcccCCCCCeEEEEEEEcC
Q psy16852        212 PTIVRPLQALLVPKDSTVTLEAEYTGTPTPEVKWFKNGKEIVSKD--IETK--DNVTKLVIKQTTKKTTGKYEIRVVNE  286 (579)
Q Consensus       212 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~i~~~~--~~~~--~~~~~l~i~~~~~~d~G~y~C~a~n~  286 (579)
                      |.+...+. ..+..|++++|.|... .....+.++|+|.......  ....  .....+.|.+++..|+|.|+|.....
T Consensus         3 PsLsa~P~-~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           3 PSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CEEEeeCC-CccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            44444443 3477899999999864 4555889999774221110  1111  23467999999999999999987644

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.00027  Score=48.84  Aligned_cols=60  Identities=20%  Similarity=0.315  Sum_probs=39.2

Q ss_pred             CCCeEEEEEEEEcc-CCC-eEEEEECCEEeccCceE----Ee-----CCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        225 KDSTVTLEAEYTGT-PTP-EVKWFKNGKEIVSKDIE----TK-----DNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       225 ~g~~~~l~C~~~~~-p~~-~v~W~~~~~~i~~~~~~----~~-----~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      .++.++|.|.+.++ |.. .++|.++|+.+......    ..     ...+.|.+..   .+...|+|++.+..
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEECC
Confidence            45789999999994 544 89999999988654411    11     1123454543   33446999998764

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.0002  Score=50.32  Aligned_cols=63  Identities=19%  Similarity=0.280  Sum_probs=39.2

Q ss_pred             CCeEEEEEEEEcc-CCC-eEEEEECCEEeccCceE----Ee-C-CeEEEEEcccCCCCCeEEEEEEEcCCe
Q psy16852        226 DSTVTLEAEYTGT-PTP-EVKWFKNGKEIVSKDIE----TK-D-NVTKLVIKQTTKKTTGKYEIRVVNEAG  288 (579)
Q Consensus       226 g~~~~l~C~~~~~-p~~-~v~W~~~~~~i~~~~~~----~~-~-~~~~l~i~~~~~~d~G~y~C~a~n~~g  288 (579)
                      +..++|.|.+.|+ |.. .++|++||+.+......    .. . .........+...+...|+|++.+..-
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTTC
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECcC
Confidence            4678999999994 544 89999999988754311    11 1 111222222334445679999988653

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.51  E-value=0.00064  Score=49.50  Aligned_cols=88  Identities=13%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             CCCceeeecCCCeEEEEEEEeeCCCeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEe-ecceeee
Q psy16852        413 PLKPVIAEAQSPATLKATVTGRPTPSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKA-SSTETKI  491 (579)
Q Consensus       413 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~-~~~~~~~  491 (579)
                      .|....+.+|++++|.|.....-...+.|++..    ++..-           .+.+......+   ..-.. ....+..
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~----~g~~~-----------~~l~~~~~~~~---~~~~~~~~~~f~~   68 (112)
T d1fo0b_           7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQD----LQKQL-----------QWLFTLRSPGD---KEVKSLPGADYLA   68 (112)
T ss_dssp             ECSEEECCTTCCEEEEEEESCTTCCEEEEEEEC----TTCCE-----------EEEEECCSTTC---EEEEEETTEEEEE
T ss_pred             CCCeEEECCCCCEEEEEEEecCCCCcEEEEeEC----CCCCc-----------cccceeccccc---ccccccccccccc
Confidence            345556889999999999875555689999941    11111           11121111111   11111 1111222


Q ss_pred             eeeCCeeEEEEeecccccceeEEEEEEe
Q psy16852        492 MTDGNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       492 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                      .. ...+.|.|..+..+|++.|.|.+.-
T Consensus        69 ~~-~~~~~l~l~~~~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          69 TR-VTDTELRLQVANMSQGRTLYCTCSA   95 (112)
T ss_dssp             EE-EETTEEEEEEESCCSCEEEEEEEES
T ss_pred             cc-ccccEEEEecCCccCCccEEEEEec
Confidence            22 2234688888999999999999753

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=2.6e-05  Score=55.81  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=48.0

Q ss_pred             CCCcccc-ccCceeeeCCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEEEEeC---CEEEEEEcCCCCCCCEEEE
Q psy16852          5 LAPRFIE-KIQPVVSHQEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLITTVE---SVSTLEIINPTKEDIGVYT   78 (579)
Q Consensus         5 ~~p~~~~-~p~~~~v~~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~   78 (579)
                      -+|.+.. .|.. .-..++.++|.|.+.++ |. ..|.|.++|.............++   ..+.|.|..-.. +.|.|+
T Consensus         4 ~aP~V~~l~p~~-~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~yt   81 (101)
T d1kcvh2           4 TAPSVFPLVPGS-ATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVT   81 (101)
T ss_dssp             BCCEEEEECCCS-CCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCE
T ss_pred             CCCEEEeECCCc-cccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEE
Confidence            3455443 3433 23468999999999885 33 489998887543211100111111   135677765554 467899


Q ss_pred             EEEEcCCeee
Q psy16852         79 CKATNIGGVA   88 (579)
Q Consensus        79 C~~~~~~g~~   88 (579)
                      |.+.+.....
T Consensus        82 C~V~H~~~~~   91 (101)
T d1kcvh2          82 CLVAHPKSST   91 (101)
T ss_dssp             EEEEEGGGTE
T ss_pred             EEEEeCCCCe
Confidence            9999865433

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.50  E-value=0.00018  Score=51.83  Aligned_cols=86  Identities=14%  Similarity=0.257  Sum_probs=49.6

Q ss_pred             ceeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeee
Q psy16852        416 PVIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMT  493 (579)
Q Consensus       416 ~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~  493 (579)
                      ...+++|+++.|+|.++|+...  .+.|.+.    .++......         -.|   ...+...+.-.....+..+..
T Consensus         9 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ----~PGkglEwv---------~~i---~~~~~~~~y~~s~kgR~tiS~   72 (124)
T d1yedb1           9 PELVRPGTSVKLSCKTSGYIFTSYWIHWLKQ----SSGQGLEWI---------ARI---YPGTGGTYYNEKFKGKATLTA   72 (124)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGSCEEEEEE----CSSSCCEEE---------EEE---ETTTTEEEECGGGBTTEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCccCCccccceE----CCCCceeee---------eec---cccccccccccccceeEEEEc
Confidence            3457789999999999987655  6889873    222221110         001   111111111111122333444


Q ss_pred             e--CCeeEEEEeecccccceeEEEEE
Q psy16852        494 D--GNRSVLLISKITRDQIGDVTCRA  517 (579)
Q Consensus       494 ~--~~~~~l~i~~~~~~d~G~Y~C~a  517 (579)
                      +  .+...|.+.+++.+|++.|.|..
T Consensus        73 D~s~~t~~L~~~sL~~eDTAvYYCAR   98 (124)
T d1yedb1          73 DKSSSTAYMQLSSLKSEDSAVYFCTR   98 (124)
T ss_dssp             ETTTTEEEEEEESCCGGGCEEEEEEE
T ss_pred             cCCcceEEecccccCCCcceEEEecc
Confidence            4  34456999999999999999964

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=9.1e-05  Score=53.08  Aligned_cols=66  Identities=17%  Similarity=0.323  Sum_probs=41.9

Q ss_pred             CCCCEEEEEEEEee-CC-CeeEEEECCEEecCCCCEEEEEe-CC----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852         20 QEQPALFTCKVEGH-PL-PTMTWQKDGTELHATEHYLITTV-ES----VSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        20 ~G~~~~l~C~~~~~-~~-~~v~W~~~g~~~~~~~~~~~~~~-~~----~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      .++.++|.|.+.++ |. ..|+|++||.............. ++    .+.|.|..-.....-.|+|++.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            57789999999985 43 48999999987643210001111 11    2456666544444557999999864

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=6.1e-05  Score=53.92  Aligned_cols=81  Identities=15%  Similarity=0.148  Sum_probs=44.4

Q ss_pred             CCCcccc-ccCceeeeCCCCEEEEEEEEeeC--CCeeEEEECCEEecCCCCEEEEEeCC----EEEEEEcCCCCCCCEEE
Q psy16852          5 LAPRFIE-KIQPVVSHQEQPALFTCKVEGHP--LPTMTWQKDGTELHATEHYLITTVES----VSTLEIINPTKEDIGVY   77 (579)
Q Consensus         5 ~~p~~~~-~p~~~~v~~G~~~~l~C~~~~~~--~~~v~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y   77 (579)
                      -||.+.. .|... -..++.++|.|.+.|+-  ...|+|.+++.......... ...++    .+.|.|..-.. +.+.|
T Consensus         4 s~PsV~~l~p~~~-~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~-~~~~g~ys~~S~L~v~~~~w-~~~~y   80 (102)
T d1mjuh2           4 TAPSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA-VLQSDLYTLSSSVTVTSSTW-PSQSI   80 (102)
T ss_dssp             BCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EEETTEEEEEEEEEECTTTT-TTSCC
T ss_pred             cCCEEEEECCCcc-ccCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEeccc-ccCCCCEEEEEEEEEehhHc-CCceE
Confidence            4566543 34332 34688999999999853  34899977764321100000 11122    35677766655 45789


Q ss_pred             EEEEEcCCeee
Q psy16852         78 TCKATNIGGVA   88 (579)
Q Consensus        78 ~C~~~~~~g~~   88 (579)
                      +|.|.+..+..
T Consensus        81 tC~V~H~~~~~   91 (102)
T d1mjuh2          81 TCNVAHPASST   91 (102)
T ss_dssp             EEEEEEGGGTE
T ss_pred             EEEEEECCCCE
Confidence            99999865543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.49  E-value=0.00017  Score=51.66  Aligned_cols=71  Identities=20%  Similarity=0.337  Sum_probs=51.4

Q ss_pred             CceEEccCCcEEEEEEEEeecCC---eEEEEEC--CEE------ccC----------CCCceEEEcCCCCeEEEEECcCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRPTP---SICWYRG--KEE------ILP----------DNGHTMEFNPTTGECVLSISEAT  171 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~--~~~------~~~----------~~~~~~~~~~~~~~~~l~i~~~~  171 (579)
                      .+..+++|+++.|+|.++|+.-.   .+.|+|.  ++.      +..          ..++.+..+.......|.|.+++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~   87 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT   87 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc
Confidence            44567899999999999986542   4688772  211      111          13456666666777899999999


Q ss_pred             CCCCeEEEEEEE
Q psy16852        172 PQDEAVYSVKAV  183 (579)
Q Consensus       172 ~~d~G~Y~C~~~  183 (579)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1ncwh1          88 TEDTATYYCAGL   99 (119)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEeEe
Confidence            999999999643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.49  E-value=0.00035  Score=51.03  Aligned_cols=88  Identities=14%  Similarity=0.246  Sum_probs=50.5

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|+++.|+|.+.|+...  .+.|.+.    .+......            |..+...+...|.-.....++.+..|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ----~PGkglEw------------vg~i~~~~~~~~y~~s~kgR~tis~D   72 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQ----APGQGLEW------------MAGIIPIFGSSHYAQKFRGRVTISAD   72 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEE----CTTCCEEE------------EEEEEGGGTEEEECGGGTTTEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceE----CCCCceEE------------EeecCCccccccccccccccEEEEec
Confidence            457889999999999987655  5788873    22222111            11111111111111111223344444


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEeC
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAENV  520 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n~  520 (579)
                        .+...|.+.+++.+|++.|.|.....
T Consensus        73 ~s~~t~~L~~~~L~~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          73 ESTRTVYLHLRGLRSDDTAVYYCASNSI  100 (133)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             cCcceeEEeeccCCCCCCEEEEeeeccC
Confidence              34556899999999999999966543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.49  E-value=0.00034  Score=50.27  Aligned_cols=69  Identities=20%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             CceEEccCCcEEEEEEEEeecC--CeEEEEEC--CEE------ccC----------CCCceEEEcCCCCeEEEEECcCCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRPT--PSICWYRG--KEE------ILP----------DNGHTMEFNPTTGECVLSISEATP  172 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~--~~~------~~~----------~~~~~~~~~~~~~~~~l~i~~~~~  172 (579)
                      ....+++|+++.|.|.++|+..  -.+.|++.  ++.      +..          ..++.+..+.......|.|.+++.
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~   87 (120)
T d1dn0b1           8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (120)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc
Confidence            3446788999999999988654  46789883  111      111          134555666666678899999999


Q ss_pred             CCCeEEEEE
Q psy16852        173 QDEAVYSVK  181 (579)
Q Consensus       173 ~d~G~Y~C~  181 (579)
                      +|++.|.|.
T Consensus        88 eDtA~YYCA   96 (120)
T d1dn0b1          88 ADTAVYYCA   96 (120)
T ss_dssp             GGCEEEEEE
T ss_pred             ccccEEEEE
Confidence            999999994

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.46  E-value=8.5e-05  Score=53.23  Aligned_cols=63  Identities=25%  Similarity=0.330  Sum_probs=42.5

Q ss_pred             CCCeEEEEEEEEc-cCCC-eEEEEECCEEeccCc----eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        225 KDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKD----IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       225 ~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~----~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      .++.++|.|.+.+ +|.. .+.|.+||.......    ..    .....+.|.|..-..+....|+|++.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4678999999998 4654 899999998754322    11    11223566665555455667999998865

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=9.3e-05  Score=52.82  Aligned_cols=63  Identities=21%  Similarity=0.286  Sum_probs=42.6

Q ss_pred             CCCeEEEEEEEEc-cCCC-eEEEEECCEEeccCc----eE----EeCCeEEEEEcccCCCCCeEEEEEEEcCC
Q psy16852        225 KDSTVTLEAEYTG-TPTP-EVKWFKNGKEIVSKD----IE----TKDNVTKLVIKQTTKKTTGKYEIRVVNEA  287 (579)
Q Consensus       225 ~g~~~~l~C~~~~-~p~~-~v~W~~~~~~i~~~~----~~----~~~~~~~l~i~~~~~~d~G~y~C~a~n~~  287 (579)
                      ..+.++|.|.+.+ +|.. .+.|.+||..+....    ..    .+...+.|.|..-.......|+|++.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            3567899999998 4654 899999998765322    11    11223556665555455678999998864

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=3.6e-05  Score=55.24  Aligned_cols=66  Identities=20%  Similarity=0.284  Sum_probs=41.6

Q ss_pred             CCCCEEEEEEEEeeCC--CeeEEEECCEEecCCCCEEEEEeC-C----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy16852         20 QEQPALFTCKVEGHPL--PTMTWQKDGTELHATEHYLITTVE-S----VSTLEIINPTKEDIGVYTCKATNIG   85 (579)
Q Consensus        20 ~G~~~~l~C~~~~~~~--~~v~W~~~g~~~~~~~~~~~~~~~-~----~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (579)
                      .++.++|.|.+.+.-+  ..|.|++||..+............ +    .+.|.|..-.......|+|.|.+..
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            3578999999988643  489999999876432111011111 1    2456666544455668999998864

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.0002  Score=51.30  Aligned_cols=73  Identities=14%  Similarity=0.161  Sum_probs=46.1

Q ss_pred             eecCCCeEEEEEEEee-CC---CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        419 AEAQSPATLKATVTGR-PT---PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-p~---~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ...+..++|+|.+.++ |.   .+++|+++|..+......                .......|.|..            
T Consensus        13 ~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~----------------~~~~~~~gtys~------------   64 (103)
T d1i1ca1          13 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTH----------------APEKQSNSTLRS------------   64 (103)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEEC----------------CCEECTTSCEEE------------
T ss_pred             hccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEEC----------------CcEECCCCCEEE------------
Confidence            3356789999999985 43   388899998876433211                111222344432            


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCC
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVA  521 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~  521 (579)
                        .+.|.|..-+....-.|+|.|.+..
T Consensus        65 --~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          65 --VSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             --EEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             --EEEEEECHHHhcCCCEEEEEEEeCC
Confidence              3447776666666667999998864

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.43  E-value=0.00027  Score=50.40  Aligned_cols=71  Identities=15%  Similarity=0.269  Sum_probs=50.3

Q ss_pred             CceEEccCCcEEEEEEEEeecC--CeEEEEEC--CEE------ccC----------CCCceEEEcCCCCeEEEEECcCCC
Q psy16852        113 KPVIAEAQSPATLKATVTGRPT--PSICWYRG--KEE------ILP----------DNGHTMEFNPTTGECVLSISEATP  172 (579)
Q Consensus       113 ~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~--~~~------~~~----------~~~~~~~~~~~~~~~~l~i~~~~~  172 (579)
                      ....+++|+++.|.|.++|+.-  -.+.|++.  ++.      +..          ..+..+..+.......|.|.+++.
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_           8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT   87 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee
Confidence            3456788999999999987643  47888873  111      111          123445555556668899999999


Q ss_pred             CCCeEEEEEEE
Q psy16852        173 QDEAVYSVKAV  183 (579)
Q Consensus       173 ~d~G~Y~C~~~  183 (579)
                      +|++.|.|.-.
T Consensus        88 eDTAvYYCAr~   98 (116)
T d1a2yb_          88 DDTARYYCARE   98 (116)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEEEe
Confidence            99999999754

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.43  E-value=0.00034  Score=50.38  Aligned_cols=89  Identities=11%  Similarity=0.130  Sum_probs=49.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--eEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        417 VIAEAQSPATLKATVTGRPTP--SICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       417 ~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ..+++|++++|+|.+.|+...  .+.|++.    .++......         -.|........ .|--.....++.+..|
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ----~PGkglewv---------~~i~~~~~~~~-~~Y~~s~kgRftiSrD   75 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQ----PPGKALEWL---------GFIRNKANGYT-TEYSPSVKGRFTISRD   75 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEE----CTTSCCEEE---------EEECCGGGTTC-EEECTTTBTTEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCcccc----CCCcceeee---------eeccccccCCc-chhchheeecceeeee
Confidence            357789999999999987655  6889873    111111110         01111110000 1100111122334333


Q ss_pred             --CCeeEEEEeecccccceeEEEEEEe
Q psy16852        495 --GNRSVLLISKITRDQIGDVTCRAEN  519 (579)
Q Consensus       495 --~~~~~l~i~~~~~~d~G~Y~C~a~n  519 (579)
                        .+...|.+.+++.+|++.|.|....
T Consensus        76 ~s~nt~~L~~~sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          76 NSQSILYLQMNTLRAEDSATYYCARDH  102 (122)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             cccceeccceeeeccCcceEEEEEecC
Confidence              3445699999999999999998643

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.40  E-value=0.0004  Score=51.17  Aligned_cols=74  Identities=15%  Similarity=0.166  Sum_probs=47.7

Q ss_pred             eecCCCeEEEEEEEee-CC---CeEEEeeCCEEcCCCCCeeEEEcCCCCeEEEEEccccCCCceeEEEEeecceeeeeee
Q psy16852        419 AEAQSPATLKATVTGR-PT---PSICWYRGKEEILPDNGHTMEFNPTTGECVLSISEATPQDEAVYSVKASSTETKIMTD  494 (579)
Q Consensus       419 ~~~g~~~~l~C~~~g~-p~---~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~  494 (579)
                      ...++.++|.|.+.|+ |.   .+++|+++|..+........                .....|.|..            
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~----------------~~~~~gt~s~------------   80 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTH----------------REDYNSTLRV------------   80 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCC----------------EEECSSSEEE------------
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECcc----------------EECCCCcEEE------------
Confidence            4567889999999985 43   37889999988754322111                1122333432            


Q ss_pred             CCeeEEEEeecccccceeEEEEEEeCCe
Q psy16852        495 GNRSVLLISKITRDQIGDVTCRAENVAG  522 (579)
Q Consensus       495 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  522 (579)
                        .+.|+|..-+......|+|.|.+..-
T Consensus        81 --~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          81 --VSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             --EEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             --EEEEEEeHHHhCCCCeEEEEEEECCC
Confidence              23477766666666779999988653