Psyllid ID: psy16861

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHcccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEccEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHEEHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mnntiynsLNYTYNINYtstnfsntslfptnstihihiFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVkplqypiiMNQNTVLLMLSNvwilpgiisftpimlgwyttpdhkqyrkhhpnvCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNvwilpgiisftpimlgwyttpdhkqyrkhhpnvCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALsrtssnivspviqstsegsavvtvsdtpqstpvtrnvrthsvTLNAKKKKKKKKKKKKKKkkkkkkkks
Flexible Loop (DISEMBL)
MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALsrtssnivspviqstsegsavvtvsdtpqstpvtrnvrthsvtlnakkkkkkkkkkkkkkkkkkkkkks
Low Complexity Region (SEG)
MnntiynslnytyninytstnfsntslfptnstIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFvmvtmlvvntvllmlsnvWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAkkkkkkkkkkkkkkkkkkkkkkS
Disordered region (IsUnstruct)
****IYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRT***I**************************************************************
Disordered Region (DISOPRED)
********LNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFT***********************IFVVNVYYALISSSISFWIPGFVMVTMYYRIYKE*****************************************************************************
Disordered Region (DISEMBL)
MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPV*********************VTRNVRTHSV***************************
Disordered Region (DISPRO)
*********************************IHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGW************HPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVS************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTxxxxxxxxxxxxxxxxxxxxxxxxxS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q4LBB6	1256	Octopamine receptor beta-	yes	N/A	0.476	0.144	0.683	2e-70
Q9VCZ3	508	Octopamine receptor beta-	no	N/A	0.445	0.334	0.629	5e-68
Q4LBB9	536	Octopamine receptor beta-	no	N/A	0.568	0.404	0.548	2e-63
P97288	388	5-hydroxytryptamine recep	yes	N/A	0.452	0.445	0.513	9e-39
O70528	388	5-hydroxytryptamine recep	yes	N/A	0.452	0.445	0.502	9e-39
Q13639	388	5-hydroxytryptamine recep	no	N/A	0.452	0.445	0.502	7e-38
Q62758	406	5-hydroxytryptamine recep	yes	N/A	0.452	0.426	0.497	2e-37
P42290	457	D(1B) dopamine receptor O	N/A	N/A	0.471	0.393	0.464	1e-35
P53454	463	D(5)-like dopamine recept	N/A	N/A	0.465	0.384	0.445	2e-35
Q28927	467	Beta-1 adrenergic recepto	N/A	N/A	0.468	0.383	0.388	3e-35

>sp|Q4LBB6|OCTB3_DROME Octopamine receptor beta-3R OS=Drosophila melanogaster GN=Octbeta3R PE=2 SV=4

 Score =  266 bits (679), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/183 (68%), Positives = 146/183 (79%), Gaps = 1/183 (0%)

Query: 44  KGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSL 103
           KG +   II+ A+LGN LVIISV ++RKLR+ITNYFVVSLA AD+LVALC M FNA V L
Sbjct: 142 KGFIFSSIILAAVLGNALVIISVQRNRKLRVITNYFVVSLAMADMLVALCAMTFNASVEL 201

Query: 104 TD-EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           +  +W FG FMC+V+NS DVYFSTASILHLCCISVDRYYAIV+PL+YP+ M   TV  ML
Sbjct: 202 SGGKWMFGPFMCNVYNSLDVYFSTASILHLCCISVDRYYAIVRPLEYPLNMTHKTVCFML 261

Query: 163 SNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVM 222
           +NVWILP +ISFTPI LGWYTT +H +    HP+ C FVVN  YALISSS+SFWIPG VM
Sbjct: 262 ANVWILPALISFTPIFLGWYTTEEHLREISLHPDQCSFVVNKAYALISSSVSFWIPGIVM 321

Query: 223 VTM 225
           + M
Sbjct: 322 LVM 324

Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.
Drosophila melanogaster (taxid: 7227)

>sp|Q9VCZ3|OCTB1_DROME Octopamine receptor beta-1R OS=Drosophila melanogaster GN=oa2 PE=2 SV=1

 Score =  258 bits (659), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 119/189 (62%), Positives = 151/189 (79%)

Query: 37  HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
           H+    +K  ++ FII+ AILGN+LVI+SV++HRKLRIITNYFVVSLA AD+LVALC M 
Sbjct: 103 HLALVFVKCFIIGFIILAAILGNMLVIVSVMRHRKLRIITNYFVVSLAVADMLVALCAMT 162

Query: 97  FNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
           FNA V ++ +W FG  MCD+WNSFDVYFSTASI+HLCCISVDRYYAIV+PL YP+IM Q 
Sbjct: 163 FNASVMISGKWMFGSVMCDMWNSFDVYFSTASIMHLCCISVDRYYAIVQPLDYPLIMTQR 222

Query: 157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
            V +ML  VW+ P ++SF PI  GWYTT ++ +Y K +P++C F VN  YA++SSS+SFW
Sbjct: 223 RVFIMLLMVWLSPALLSFLPICSGWYTTTENYKYLKSNPHICEFKVNKAYAIVSSSMSFW 282

Query: 217 IPGFVMVTM 225
           IPG VM++M
Sbjct: 283 IPGIVMLSM 291

Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. Octopamine does not cause Ca(2+) release in oa2-expressing cells.

Drosophila melanogaster (taxid: 7227)

>sp|Q4LBB9|OCTB2_DROME Octopamine receptor beta-2R OS=Drosophila melanogaster GN=Octbeta2R PE=2 SV=2

 Score =  243 bits (620), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/226 (54%), Positives = 154/226 (68%), Gaps = 9/226 (3%)

Query: 7   NSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFP---------FIIKGMLMCFIIITAIL 57
           + LN T     +  NF+ +    ++   H    P         ++ K  +M  III AI 
Sbjct: 110 HELNATQPFGGSGLNFNESGAGLSDHHHHQQHNPDEDWLDNIVWVFKAFVMLLIIIAAIC 169

Query: 58  GNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW 117
           GNLLVIISV++ RKLR+ITNYFVVSLA AD++VA+  M FN  V +T  W F  F+CD+W
Sbjct: 170 GNLLVIISVMRVRKLRVITNYFVVSLAMADIMVAIMAMTFNFSVQVTGRWNFSPFLCDLW 229

Query: 118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPI 177
           NS DVYFSTASILHLCCISVDRYYAIVKPL+YPI M +  V +ML N WI P ++SF PI
Sbjct: 230 NSLDVYFSTASILHLCCISVDRYYAIVKPLKYPISMTKRVVGIMLLNTWISPALLSFLPI 289

Query: 178 MLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMV 223
            +GWYTTP H+Q+   +P  C FVVN YYA+ISSSISFWIP  +M+
Sbjct: 290 FIGWYTTPQHQQFVIQNPTQCSFVVNKYYAVISSSISFWIPCTIMI 335

Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Drosophila melanogaster (taxid: 7227)

>sp|P97288|5HT4R_MOUSE 5-hydroxytryptamine receptor 4 OS=Mus musculus GN=Htr4 PE=1 SV=3

 Score =  161 bits (407), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 119/181 (65%), Gaps = 8/181 (4%)

Query: 51  IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
           +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ VMPF AI  + D W +
Sbjct: 29  VILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWAY 88

Query: 110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI-VKPLQYPIIMNQNTVLLMLSNVWIL 168
           G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M    + LML   W+L
Sbjct: 89  GEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVL 148

Query: 169 PGIISFTPIMLGWYTTP--DHKQYRK--HHPNV--CIFVVNVYYALISSSISFWIPGFVM 222
           P  ISF PIM GW      D  + RK  H+ N   C+F+VN  YA+  S ++F+IP  +M
Sbjct: 149 PMFISFLPIMQGWNNIGIVDVIEKRKFSHNSNSTWCVFMVNKPYAITCSVVAFYIPFLLM 208

Query: 223 V 223
           V
Sbjct: 209 V 209

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that stimulate adenylate cyclase.

Mus musculus (taxid: 10090)

>sp|O70528|5HT4R_CAVPO 5-hydroxytryptamine receptor 4 OS=Cavia porcellus GN=HTR4 PE=2 SV=1

 Score =  161 bits (407), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 118/181 (65%), Gaps = 8/181 (4%)

Query: 51  IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
           +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ VMPF AI  + D W +
Sbjct: 29  VILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWVY 88

Query: 110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI-VKPLQYPIIMNQNTVLLMLSNVWIL 168
           G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M    + LML   W++
Sbjct: 89  GEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVI 148

Query: 169 PGIISFTPIMLGWYTTP--DHKQYRKHHPNV----CIFVVNVYYALISSSISFWIPGFVM 222
           P  ISF PIM GW      D  + RK + N     C+F+VN  YA+  S ++F+IP  +M
Sbjct: 149 PMFISFLPIMQGWNNIGIVDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLM 208

Query: 223 V 223
           V
Sbjct: 209 V 209

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that stimulate adenylate cyclase.

Cavia porcellus (taxid: 10141)

>sp|Q13639|5HT4R_HUMAN 5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2

 Score =  158 bits (399), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 117/181 (64%), Gaps = 8/181 (4%)

Query: 51  IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
           +I+ AILGNLLV+++V   R+LR I TNYF+VSLAFADLLV++ VMPF AI  + D W +
Sbjct: 29  VILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWIY 88

Query: 110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI-VKPLQYPIIMNQNTVLLMLSNVWIL 168
           G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M    + LML   W++
Sbjct: 89  GEVFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVI 148

Query: 169 PGIISFTPIMLGWYTTP--DHKQYRKHHPNV----CIFVVNVYYALISSSISFWIPGFVM 222
           P  ISF PIM GW      D  + RK + N     C+F+VN  YA+  S ++F+IP  +M
Sbjct: 149 PTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLM 208

Query: 223 V 223
           V
Sbjct: 209 V 209

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that stimulate adenylate cyclase.

Homo sapiens (taxid: 9606)

>sp|Q62758|5HT4R_RAT 5-hydroxytryptamine receptor 4 OS=Rattus norvegicus GN=Htr4 PE=2 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 118/181 (65%), Gaps = 8/181 (4%)

Query: 51  IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
           +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ V  F AI  + D W++
Sbjct: 29  VILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLVNAFGAIELVQDIWFY 88

Query: 110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI-VKPLQYPIIMNQNTVLLMLSNVWIL 168
           G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M    + LML   W++
Sbjct: 89  GEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVI 148

Query: 169 PGIISFTPIMLGWYTTP--DHKQYRK--HHPN--VCIFVVNVYYALISSSISFWIPGFVM 222
           P  ISF PIM GW      D  + RK  H+ N   C+F+VN  YA+  S ++F+IP  +M
Sbjct: 149 PMFISFLPIMQGWNNIGIVDVIEKRKFNHNSNSTFCVFMVNKPYAITCSVVAFYIPFLLM 208

Query: 223 V 223
           V
Sbjct: 209 V 209

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that stimulate adenylate cyclase.

Rattus norvegicus (taxid: 10116)

>sp|P42290|DRD5_XENLA D(1B) dopamine receptor OS=Xenopus laevis GN=drd5 PE=2 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 115/185 (62%), Gaps = 5/185 (2%)

Query: 42  IIKGMLMCFIIITAILGNLLVIISVIKHRKLRI-ITNYFVVSLAFADLLVALCVMPFNAI 100
           I+ G L+  +I   + GN+LV  +V++ R LR  +TN F+VSLA +DLLVAL VMP+ A+
Sbjct: 42  IVTGSLLLLLIFWTLFGNILVCTAVMRFRHLRSRVTNIFIVSLAVSDLLVALLVMPWKAV 101

Query: 101 VSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLL 160
             +   W FG F CD+W +FD+  STASIL+LC ISVDRY+AI  P +Y   M Q   LL
Sbjct: 102 AEVAGHWPFGAF-CDIWVAFDIMCSTASILNLCVISVDRYWAISSPFRYERKMTQRVALL 160

Query: 161 MLSNVWILPGIISFTPIMLGWY--TTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIP 218
           M+S  W L  +ISF P+ L W+   T DH     H    C   +N  YA+ SS ISF+IP
Sbjct: 161 MISTAWALSVLISFIPVQLSWHKSETEDHL-LSNHSTGNCDSSLNRTYAISSSLISFYIP 219

Query: 219 GFVMV 223
             +M+
Sbjct: 220 VAIMI 224

Dopamine receptor whose activity is mediated by G proteins which activate adenylyl cyclase.

Xenopus laevis (taxid: 8355)

>sp|P53454|DRD5L_TAKRU D(5)-like dopamine receptor OS=Takifugu rubripes GN=dl PE=3 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 113/182 (62%), Gaps = 4/182 (2%)

Query: 43  IKGMLMCFIIITAILGNLLVIISVIKHRKLRI-ITNYFVVSLAFADLLVALCVMPFNAIV 101
           + G ++C +I++ +LGN LV  +VIK R LR  +TN FVVSLA +DL VA+ VMP+ A+ 
Sbjct: 41  LTGCVLCALIVSTLLGNTLVCAAVIKFRHLRSKVTNAFVVSLAVSDLFVAVLVMPWRAVS 100

Query: 102 SLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLM 161
            +   W FG F CD W +FD+  STASIL+LC IS+DRY+AI  P +Y   M +    LM
Sbjct: 101 EVAGVWLFGRF-CDTWVAFDIMCSTASILNLCVISMDRYWAISNPFRYERRMTRRFAFLM 159

Query: 162 LSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFV 221
           ++  W L  +ISF P+ L W+   ++     H    C   +N  YA+ SS ISF+IP  +
Sbjct: 160 IAVAWTLSVLISFIPVQLNWHRADNNSS--AHEQGDCNASLNRTYAISSSLISFYIPVLI 217

Query: 222 MV 223
           MV
Sbjct: 218 MV 219

Receptor for dopamine.

Takifugu rubripes (taxid: 31033)

>sp|Q28927|ADRB1_SHEEP Beta-1 adrenergic receptor OS=Ovis aries GN=ADRB1 PE=2 SV=2

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 113/180 (62%), Gaps = 1/180 (0%)

Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G+LM FI++  + GN+LVI+++ K  +L+ +TN F++SLA ADL++ L V+PF A + + 
Sbjct: 62  GLLMAFIVLLIVAGNVLVIVAIAKTPRLQTLTNLFIMSLASADLVMGLLVVPFGATIVVW 121

Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W +G F C++W S DV   TASI  LC I++DRY AI  P +Y  ++ +     ++  
Sbjct: 122 GRWEYGSFFCELWTSVDVLCVTASIETLCVIALDRYLAITSPFRYQSLLTRARARALVCT 181

Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFWIPGFVMV 223
           VW +  ++SF PI + W+   D K  R ++ P  C F++N  YA+ SS +SF++P  +M 
Sbjct: 182 VWAISALVSFLPIFMQWWGDKDAKASRCYNDPECCDFIINEGYAITSSVVSFYVPLCIMA 241

Beta-adrenergic receptors mediate the catecholamine-induced activation of adenylate cyclase through the action of G proteins. This receptor binds epinephrine and norepinephrine with approximately equal affinity.

Ovis aries (taxid: 9940)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
242022774	350	class A rhodopsin-like G-protein coupled	0.492	0.537	0.730	4e-77
270014322	398	hypothetical protein TcasGA2_TC012598, p	0.565	0.542	0.644	4e-74
189241144	376	PREDICTED: similar to Octopamine recepto	0.484	0.492	0.741	4e-73
328705267	454	PREDICTED: octopamine receptor beta-3R-l	0.463	0.389	0.702	6e-73
347968755	1230	AGAP002888-PC [Anopheles gambiae str. PE	0.536	0.166	0.650	4e-71
157111761	384	beta adrenergic receptor [Aedes aegypti]	0.479	0.476	0.699	4e-70
195109568	1286	GI23112 [Drosophila mojavensis] gi|19391	0.484	0.143	0.672	1e-69
198449932	1333	GA26829, isoform A [Drosophila pseudoobs	0.484	0.138	0.672	2e-69
194764823	1281	GF23003 [Drosophila ananassae] gi|190614	0.549	0.163	0.582	3e-69
195394393	1190	GJ10602 [Drosophila virilis] gi|19414253	0.560	0.179	0.608	7e-69

>gi|242022774|ref|XP_002431813.1| class A rhodopsin-like G-protein coupled receptor GPRoar4, putative [Pediculus humanus corporis] gi|212517145|gb|EEB19075.1| class A rhodopsin-like G-protein coupled receptor GPRoar4, putative [Pediculus humanus corporis]

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 138/189 (73%), Positives = 160/189 (84%), Gaps = 1/189 (0%)

Query: 38  IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPF 97
           + P I+KG +M  II+TA+LGN+LVIISVI+HRKLR+ITNY+VVSLA ADLLVALC M F
Sbjct: 79  VVPAIVKGFIMGTIIVTAVLGNILVIISVIRHRKLRVITNYYVVSLAMADLLVALCAMTF 138

Query: 98  NAIVSLTDE-WYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
           NA V LT+  W FGYFMCDV+NS DVYFSTASILHLCCISVDRYYAIV+PLQYPI M   
Sbjct: 139 NASVELTNGMWLFGYFMCDVYNSLDVYFSTASILHLCCISVDRYYAIVRPLQYPITMTHR 198

Query: 157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
           TV  ML+NVWILP +ISFTPI LGWYTT +H+++R+ +P VCIFVVN YYALISS +SFW
Sbjct: 199 TVTFMLANVWILPALISFTPIFLGWYTTEEHQEFRRTNPKVCIFVVNKYYALISSGVSFW 258

Query: 217 IPGFVMVTM 225
           IPG VM+ M
Sbjct: 259 IPGVVMIIM 267

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014322|gb|EFA10770.1| hypothetical protein TcasGA2_TC012598, partial [Tribolium castaneum]

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 147/228 (64%), Positives = 169/228 (74%), Gaps = 12/228 (5%)

Query: 10  NYTYNINYTSTNF--------SNTSLFPTNSTIHIH---IFPFIIKGMLMCFIIITAILG 58
           +++  +  TSTN         SN +   T    H H   +   I+KG +   II++A+LG
Sbjct: 3   SFSATLTATSTNLPSVLQNGTSNDTNVATVGNPHPHWTELLLLIVKGFIFGTIIVSAVLG 62

Query: 59  NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD-EWYFGYFMCDVW 117
           N LVIISV +HRKLR+ITNY+VVSLA AD+LVALC M FNA V LT  +W FGYFMCDVW
Sbjct: 63  NALVIISVHRHRKLRVITNYYVVSLAMADMLVALCAMTFNASVELTGGKWLFGYFMCDVW 122

Query: 118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPI 177
           NS DVYFSTASILHLCCISVDRYYAIV+PL+YPI M   TV  ML+NVW LP +ISFTPI
Sbjct: 123 NSLDVYFSTASILHLCCISVDRYYAIVRPLEYPITMTHRTVSFMLANVWTLPALISFTPI 182

Query: 178 MLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
            LGWYTT DH  +RK +PNVC FVVN YYALISSSISFWIPG VMVTM
Sbjct: 183 FLGWYTTEDHIDFRKTNPNVCKFVVNQYYALISSSISFWIPGIVMVTM 230

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241144|ref|XP_974238.2| PREDICTED: similar to Octopamine receptor beta-3R (DmOct-beta-3R) [Tribolium castaneum]

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/186 (74%), Positives = 154/186 (82%), Gaps = 1/186 (0%)

Query: 41  FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAI 100
            I+KG +   II++A+LGN LVIISV +HRKLR+ITNY+VVSLA AD+LVALC M FNA 
Sbjct: 43  LIVKGFIFGTIIVSAVLGNALVIISVHRHRKLRVITNYYVVSLAMADMLVALCAMTFNAS 102

Query: 101 VSLTD-EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVL 159
           V LT  +W FGYFMCDVWNS DVYFSTASILHLCCISVDRYYAIV+PL+YPI M   TV 
Sbjct: 103 VELTGGKWLFGYFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVRPLEYPITMTHRTVS 162

Query: 160 LMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPG 219
            ML+NVW LP +ISFTPI LGWYTT DH  +RK +PNVC FVVN YYALISSSISFWIPG
Sbjct: 163 FMLANVWTLPALISFTPIFLGWYTTEDHIDFRKTNPNVCKFVVNQYYALISSSISFWIPG 222

Query: 220 FVMVTM 225
            VMVTM
Sbjct: 223 IVMVTM 228

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705267|ref|XP_001948521.2| PREDICTED: octopamine receptor beta-3R-like [Acyrthosiphon pisum]

 Score =  280 bits (717), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/185 (70%), Positives = 151/185 (81%)

Query: 41  FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAI 100
            +IK + MC II+ A+LGN LV+ISV++HRKLRI+TNY+VVSLAFAD LVALC M FNA 
Sbjct: 108 LVIKTVAMCSIILCAVLGNALVVISVVRHRKLRILTNYYVVSLAFADFLVALCAMSFNAS 167

Query: 101 VSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLL 160
           V +T +W FGY MCDVWNS DVYFSTASILHLCCISVDRYYAIV PLQYPI M Q TVL 
Sbjct: 168 VEITGKWMFGYVMCDVWNSLDVYFSTASILHLCCISVDRYYAIVSPLQYPITMTQRTVLY 227

Query: 161 MLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGF 220
           ML NVW LP +ISF PI  GWYTT +H+ +R+ +P  C+FVVN YYA+ISSS+SFWIPG 
Sbjct: 228 MLLNVWTLPALISFLPIFFGWYTTAEHQAFRRKNPMSCVFVVNRYYAIISSSVSFWIPGV 287

Query: 221 VMVTM 225
           VM+ M
Sbjct: 288 VMIVM 292

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968755|ref|XP_003436282.1| AGAP002888-PC [Anopheles gambiae str. PEST] gi|333467858|gb|EGK96732.1| AGAP002888-PC [Anopheles gambiae str. PEST]

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 138/212 (65%), Positives = 162/212 (76%), Gaps = 7/212 (3%)

Query: 20  TNFSNTSLFPTNSTI------HIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLR 73
           TN  N ++ PT STI       + +    +K ++   III A+LGN LVIISV K+RKLR
Sbjct: 89  TNAVNLTV-PTASTIVEPADRLVELTVLCLKSLIFGSIIIGAVLGNALVIISVHKNRKLR 147

Query: 74  IITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLC 133
           +ITNYFVVSLA AD+LVALC M FNA V L+  W FG FMCDVWNS DVYFSTASILHLC
Sbjct: 148 VITNYFVVSLAMADMLVALCAMTFNASVELSGRWLFGSFMCDVWNSLDVYFSTASILHLC 207

Query: 134 CISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH 193
           CISVDRY+AIV+PL+YP+ M Q TV  ML+NVW+LP +ISFTPI LGWYTT +H    K 
Sbjct: 208 CISVDRYFAIVRPLEYPLYMTQRTVFFMLANVWVLPALISFTPIFLGWYTTAEHLAALKI 267

Query: 194 HPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
           +P++CIFVVN  YA+ISSSISFWIPG VMVTM
Sbjct: 268 NPDLCIFVVNKSYAIISSSISFWIPGIVMVTM 299

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157111761|ref|XP_001651715.1| beta adrenergic receptor [Aedes aegypti]

 Score =  271 bits (693), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/183 (69%), Positives = 149/183 (81%)

Query: 43  IKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           +K ++   III A+LGN LVIISV K+RKLR+ITNYFVVSLA AD++VALC M FNA V 
Sbjct: 96  MKSLIFGSIIIGAVLGNALVIISVHKNRKLRVITNYFVVSLAMADIMVALCAMTFNASVE 155

Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L+  W FG FMCDVWNS DVYFSTASILHLCCISVDRY+AIV+PL+YP+ M   TV  ML
Sbjct: 156 LSGRWLFGPFMCDVWNSLDVYFSTASILHLCCISVDRYFAIVRPLEYPLYMTHRTVGFML 215

Query: 163 SNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVM 222
           +NVW+LP +ISFTPI LGWYTT +H +  K +P +C+FVVN  YALISSSISFWIPG VM
Sbjct: 216 ANVWMLPALISFTPIFLGWYTTAEHLETLKDNPEMCVFVVNKAYALISSSISFWIPGIVM 275

Query: 223 VTM 225
           VTM
Sbjct: 276 VTM 278

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195109568|ref|XP_001999356.1| GI23112 [Drosophila mojavensis] gi|193915950|gb|EDW14817.1| GI23112 [Drosophila mojavensis]

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 125/186 (67%), Positives = 148/186 (79%), Gaps = 1/186 (0%)

Query: 41  FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAI 100
            ++KG +   II+ A+LGN LVIISV ++RKLR+ITNYFVVSLA AD+LVALC M FNA 
Sbjct: 165 LLLKGFIFSSIILAAVLGNALVIISVQRNRKLRVITNYFVVSLAMADMLVALCAMTFNAS 224

Query: 101 VSLTD-EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVL 159
           V L+  +W FG FMC+V+NS DVYFSTASILHLCCISVDRYYAIV+PL+YP+ M   TV 
Sbjct: 225 VELSGGKWMFGPFMCNVYNSLDVYFSTASILHLCCISVDRYYAIVRPLEYPLNMTHRTVC 284

Query: 160 LMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPG 219
            ML+NVWILP +ISFTPI LGWYTT +H +    HP+ C FVVN  YALISSS+SFWIPG
Sbjct: 285 FMLANVWILPALISFTPIFLGWYTTAEHLREVSLHPDQCSFVVNKAYALISSSVSFWIPG 344

Query: 220 FVMVTM 225
            VM+ M
Sbjct: 345 IVMLVM 350

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198449932|ref|XP_002136989.1| GA26829, isoform A [Drosophila pseudoobscura pseudoobscura] gi|198130819|gb|EDY67547.1| GA26829, isoform A [Drosophila pseudoobscura pseudoobscura]

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/186 (67%), Positives = 148/186 (79%), Gaps = 1/186 (0%)

Query: 41  FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAI 100
            ++KG +   II+ A+LGN LVIISV ++RKLR+ITNYFVVSLA AD+LVALC M FNA 
Sbjct: 192 LLLKGFIFSSIILAAVLGNALVIISVQRNRKLRVITNYFVVSLAMADMLVALCAMTFNAS 251

Query: 101 VSLTD-EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVL 159
           V L+  +W FG FMC+V+NS DVYFSTASILHLCCISVDRYYAIV+PL+YP+ M   TV 
Sbjct: 252 VELSGGKWMFGPFMCNVYNSLDVYFSTASILHLCCISVDRYYAIVRPLEYPLNMTHKTVC 311

Query: 160 LMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPG 219
            ML+NVWILP +ISFTPI LGWYTT +H +    HP+ C FVVN  YALISSS+SFWIPG
Sbjct: 312 FMLANVWILPALISFTPIFLGWYTTEEHLREISIHPDQCSFVVNKAYALISSSVSFWIPG 371

Query: 220 FVMVTM 225
            VM+ M
Sbjct: 372 IVMLVM 377

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194764823|ref|XP_001964528.1| GF23003 [Drosophila ananassae] gi|190614800|gb|EDV30324.1| GF23003 [Drosophila ananassae]

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 130/223 (58%), Positives = 163/223 (73%), Gaps = 13/223 (5%)

Query: 16  NYTSTNFSNTSLFPTNSTIHIHIFP------------FIIKGMLMCFIIITAILGNLLVI 63
           ++ +TN +  ++  TN+++ +   P             ++KG +   II+ A+LGN LVI
Sbjct: 103 DFLATNTTAQAIANTNTSLILEERPDLEEESWLDVSLLVLKGFIFSSIILAAVLGNALVI 162

Query: 64  ISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD-EWYFGYFMCDVWNSFDV 122
           ISV ++RKLR+ITNYFVVSLA AD+LVALC M FNA V L+  +W FG FMC+V+NS DV
Sbjct: 163 ISVQRNRKLRVITNYFVVSLAMADMLVALCAMTFNASVELSGGKWMFGPFMCNVYNSLDV 222

Query: 123 YFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWY 182
           YFSTASILHLCCISVDRYYAIV+PL+YP+ M   TV  ML+NVWILP +ISFTPI LGWY
Sbjct: 223 YFSTASILHLCCISVDRYYAIVRPLEYPLNMTHKTVCFMLANVWILPALISFTPIFLGWY 282

Query: 183 TTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
           TT +H +    HP+ C FVVN  YALISSS+SFWIPG VM+ M
Sbjct: 283 TTEEHLREVSLHPDQCSFVVNKAYALISSSVSFWIPGIVMLVM 325

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195394393|ref|XP_002055827.1| GJ10602 [Drosophila virilis] gi|194142536|gb|EDW58939.1| GJ10602 [Drosophila virilis]

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 132/217 (60%), Positives = 161/217 (74%), Gaps = 3/217 (1%)

Query: 10  NYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKH 69
           N T N N   ++   TS    +S + + +   ++KG +   II+ A+LGN LVIISV ++
Sbjct: 57  NITGNANANISSVVETSEQFEDSWLDMSLL--LLKGFIFSSIILAAVLGNALVIISVQRN 114

Query: 70  RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD-EWYFGYFMCDVWNSFDVYFSTAS 128
           RKLR+ITNYFVVSLA AD+LVALC M FNA V L+  +W FG FMC+V+NS DVYFSTAS
Sbjct: 115 RKLRVITNYFVVSLAMADMLVALCAMTFNASVELSGGKWMFGPFMCNVYNSLDVYFSTAS 174

Query: 129 ILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHK 188
           ILHLCCISVDRYYAIV+PL+YP+ M   TV  ML+NVWILP +ISFTPI LGWYTT +H 
Sbjct: 175 ILHLCCISVDRYYAIVRPLEYPLNMTHRTVCFMLANVWILPALISFTPIFLGWYTTAEHL 234

Query: 189 QYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
           +    HP+ C FVVN  YALISSS+SFWIPG VM+ M
Sbjct: 235 REISLHPDQCSFVVNKAYALISSSVSFWIPGVVMLVM 271

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
FB|FBgn0038980	508	oa2 "octopamine receptor 2" [D	0.479	0.360	0.633	6.9e-63
FB|FBgn0250910	1256	Octbeta3R "Octbeta3R" [Drosoph	0.465	0.141	0.681	4.8e-62
FB|FBgn0038063	536	Octbeta2R "Octbeta2R" [Drosoph	0.465	0.332	0.651	4.3e-61
UNIPROTKB|F1N3N9	402	HTR4 "Uncharacterized protein"	0.374	0.355	0.533	4.6e-42
UNIPROTKB|F1RLA8	366	HTR4 "5-hydroxytryptamine rece	0.374	0.390	0.520	5.9e-42
UNIPROTKB|F1RLB0	402	HTR4 "5-hydroxytryptamine rece	0.374	0.355	0.520	5.9e-42
UNIPROTKB|F1LM90	398	Htr4 "5-hydroxytryptamine rece	0.471	0.452	0.492	6.1e-39
UNIPROTKB|F1LM98	379	Htr4 "5-hydroxytryptamine rece	0.471	0.474	0.492	6.1e-39
UNIPROTKB|P21918	477	DRD5 "D(1B) dopamine receptor"	0.366	0.293	0.471	1.3e-38
MGI|MGI:109246	388	Htr4 "5 hydroxytryptamine (ser	0.471	0.463	0.497	1.6e-38

FB|FBgn0038980 oa2 "octopamine receptor 2" [Drosophila melanogaster (taxid:7227)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 116/183 (63%), Positives = 146/183 (79%)

Query:    37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
             H+    +K  ++ FII+ AILGN+LVI+SV++HRKLRIITNYFVVSLA AD+LVALC M 
Sbjct:   103 HLALVFVKCFIIGFIILAAILGNMLVIVSVMRHRKLRIITNYFVVSLAVADMLVALCAMT 162

Query:    97 FNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
             FNA V ++ +W FG  MCD+WNSFDVYFSTASI+HLCCISVDRYYAIV+PL YP+IM Q 
Sbjct:   163 FNASVMISGKWMFGSVMCDMWNSFDVYFSTASIMHLCCISVDRYYAIVQPLDYPLIMTQR 222

Query:   157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
              V +ML  VW+ P ++SF PI  GWYTT ++ +Y K +P++C F VN  YA++SSS+SFW
Sbjct:   223 RVFIMLLMVWLSPALLSFLPICSGWYTTTENYKYLKSNPHICEFKVNKAYAIVSSSMSFW 282

Query:   217 IPG 219
             IPG
Sbjct:   283 IPG 285

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0004989 "octopamine receptor activity" evidence=IDA

GO:0051482 "elevation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway" evidence=IDA

GO:0045886 "negative regulation of synaptic growth at neuromuscular junction" evidence=IMP

FB|FBgn0250910 Octbeta3R "Octbeta3R" [Drosophila melanogaster (taxid:7227)]

 Score = 644 (231.8 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 122/179 (68%), Positives = 144/179 (80%)

Query:    42 IIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIV 101
             ++KG +   II+ A+LGN LVIISV ++RKLR+ITNYFVVSLA AD+LVALC M FNA V
Sbjct:   140 LLKGFIFSSIILAAVLGNALVIISVQRNRKLRVITNYFVVSLAMADMLVALCAMTFNASV 199

Query:   102 SLTD-EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLL 160
              L+  +W FG FMC+V+NS DVYFSTASILHLCCISVDRYYAIV+PL+YP+ M   TV  
Sbjct:   200 ELSGGKWMFGPFMCNVYNSLDVYFSTASILHLCCISVDRYYAIVRPLEYPLNMTHKTVCF 259

Query:   161 MLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPG 219
             ML+NVWILP +ISFTPI LGWYTT +H +    HP+ C FVVN  YALISSS+SFWIPG
Sbjct:   260 MLANVWILPALISFTPIFLGWYTTEEHLREISLHPDQCSFVVNKAYALISSSVSFWIPG 318

GO:0016021 "integral to membrane" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0004989 "octopamine receptor activity" evidence=IDA

FB|FBgn0038063 Octbeta2R "Octbeta2R" [Drosophila melanogaster (taxid:7227)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 116/178 (65%), Positives = 138/178 (77%)

Query:    41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAI 100
             ++ K  +M  III AI GNLLVIISV++ RKLR+ITNYFVVSLA AD++VA+  M FN  
Sbjct:   153 WVFKAFVMLLIIIAAICGNLLVIISVMRVRKLRVITNYFVVSLAMADIMVAIMAMTFNFS 212

Query:   101 VSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLL 160
             V +T  W F  F+CD+WNS DVYFSTASILHLCCISVDRYYAIVKPL+YPI M +  V +
Sbjct:   213 VQVTGRWNFSPFLCDLWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPISMTKRVVGI 272

Query:   161 MLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIP 218
             ML N WI P ++SF PI +GWYTTP H+Q+   +P  C FVVN YYA+ISSSISFWIP
Sbjct:   273 MLLNTWISPALLSFLPIFIGWYTTPQHQQFVIQNPTQCSFVVNKYYAVISSSISFWIP 330

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004989 "octopamine receptor activity" evidence=IDA

GO:0045887 "positive regulation of synaptic growth at neuromuscular junction" evidence=IMP

UNIPROTKB|F1N3N9 HTR4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 363 (132.8 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 79/148 (53%), Positives = 99/148 (66%)

Query:    39 FPFIIKGMLMCF---IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F   +I+ AILGNLLV+ +V + R+LR I TNYF+VSLAFADLLV++ V
Sbjct:    14 FRSVEKVVLLTFLSAVILMAILGNLLVMAAVCRDRQLRKIKTNYFIVSLAFADLLVSVLV 73

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W +G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    74 MPFGAIELVQDIWIYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 133

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGW 181
                 + LML   W++P  ISF PIM GW
Sbjct:   134 TPLRIALMLGGCWVIPMFISFLPIMQGW 161

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RLA8 HTR4 "5-hydroxytryptamine receptor 4" [Sus scrofa (taxid:9823)]

 Score = 361 (132.1 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
 Identities = 77/148 (52%), Positives = 101/148 (68%)

Query:    39 FPFIIKGMLMCFI---IITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F+   I+ A+LGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ V
Sbjct:    14 FGSVEKVVLLTFVSAVILMAVLGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLV 73

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W +G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    74 MPFGAIELVQDVWIYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 133

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGW 181
                 V ++L+  W +P +ISF PIM GW
Sbjct:   134 TPLRVAVLLAGCWAIPVLISFLPIMQGW 161

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

UNIPROTKB|F1RLB0 HTR4 "5-hydroxytryptamine receptor 4" [Sus scrofa (taxid:9823)]

 Score = 361 (132.1 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
 Identities = 77/148 (52%), Positives = 101/148 (68%)

Query:    39 FPFIIKGMLMCFI---IITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F+   I+ A+LGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ V
Sbjct:    14 FGSVEKVVLLTFVSAVILMAVLGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLV 73

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W +G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    74 MPFGAIELVQDVWIYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 133

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGW 181
                 V ++L+  W +P +ISF PIM GW
Sbjct:   134 TPLRVAVLLAGCWAIPVLISFLPIMQGW 161

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

UNIPROTKB|F1LM90 Htr4 "5-hydroxytryptamine receptor 4" [Rattus norvegicus (taxid:10116)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 94/191 (49%), Positives = 124/191 (64%)

Query:    39 FPFIIKGMLMCF---IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F   +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ V
Sbjct:     6 FGSVEKVVLLTFFAMVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLV 65

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W++G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    66 MPFGAIELVQDIWFYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 125

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGWYTTP--DHKQYRK--HHPN--VCIFVVNVYYA 207
                 + LML   W++P  ISF PIM GW      D  + RK  H+ N   C+F+VN  YA
Sbjct:   126 TPLRIALMLGGCWVIPMFISFLPIMQGWNNIGIVDVIEKRKFNHNSNSTFCVFMVNKPYA 185

Query:   208 LISSSISFWIP 218
             +  S ++F+IP
Sbjct:   186 ITCSVVAFYIP 196

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1LM98 Htr4 "5-hydroxytryptamine receptor 4" [Rattus norvegicus (taxid:10116)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 94/191 (49%), Positives = 124/191 (64%)

Query:    39 FPFIIKGMLMCF---IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F   +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ V
Sbjct:     6 FGSVEKVVLLTFFAMVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLV 65

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W++G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    66 MPFGAIELVQDIWFYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 125

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGWYTTP--DHKQYRK--HHPN--VCIFVVNVYYA 207
                 + LML   W++P  ISF PIM GW      D  + RK  H+ N   C+F+VN  YA
Sbjct:   126 TPLRIALMLGGCWVIPMFISFLPIMQGWNNIGIVDVIEKRKFNHNSNSTFCVFMVNKPYA 185

Query:   208 LISSSISFWIP 218
             +  S ++F+IP
Sbjct:   186 ITCSVVAFYIP 196

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P21918 DRD5 "D(1B) dopamine receptor" [Homo sapiens (taxid:9606)]

 Score = 341 (125.1 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 67/142 (47%), Positives = 94/142 (66%)

Query:    42 IIKGMLMCFIIITAILGNLLVIISVIKHRKLRI-ITNYFVVSLAFADLLVALCVMPFNAI 100
             ++   L+  +II  +LGN+LV  ++++ R LR  +TN F+VSLA +DL VAL VMP+ A+
Sbjct:    41 VVTACLLTLLIIWTLLGNVLVCAAIVRSRHLRANMTNVFIVSLAVSDLFVALLVMPWKAV 100

Query:   101 VSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLL 160
               +   W FG F CDVW +FD+  STASIL+LC ISVDRY+AI +P +Y   M Q   L+
Sbjct:   101 AEVAGYWPFGAF-CDVWVAFDIMCSTASILNLCVISVDRYWAISRPFRYKRKMTQRMALV 159

Query:   161 MLSNVWILPGIISFTPIMLGWY 182
             M+   W L  +ISF P+ L W+
Sbjct:   160 MVGLAWTLSILISFIPVQLNWH 181

GO:0001975 "response to amphetamine" evidence=IEA

GO:0001992 "regulation of systemic arterial blood pressure by vasopressin" evidence=IEA

GO:0001994 "norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure" evidence=IEA

GO:0008306 "associative learning" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0042220 "response to cocaine" evidence=IEA

GO:0045776 "negative regulation of blood pressure" evidence=IEA

GO:0045924 "regulation of female receptivity" evidence=IEA

GO:0046960 "sensitization" evidence=IEA

GO:0060292 "long term synaptic depression" evidence=IEA

GO:0004952 "dopamine neurotransmitter receptor activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS;TAS

GO:0045762 "positive regulation of adenylate cyclase activity" evidence=IDA;NAS

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IDA

GO:0007268 "synaptic transmission" evidence=NAS

GO:0033861 "negative regulation of NAD(P)H oxidase activity" evidence=IDA

GO:0035240 "dopamine binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=IDA

GO:0072593 "reactive oxygen species metabolic process" evidence=IDA

GO:0001963 "synaptic transmission, dopaminergic" evidence=NAS

GO:0001588 "dopamine neurotransmitter receptor activity, coupled via Gs" evidence=TAS

GO:0007190 "activation of adenylate cyclase activity" evidence=TAS

GO:0006874 "cellular calcium ion homeostasis" evidence=TAS

GO:0060158 "phospholipase C-activating dopamine receptor signaling pathway" evidence=TAS

GO:0071870 "cellular response to catecholamine stimulus" evidence=IDA

MGI|MGI:109246 Htr4 "5 hydroxytryptamine (serotonin) receptor 4" [Mus musculus (taxid:10090)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 95/191 (49%), Positives = 123/191 (64%)

Query:    39 FPFIIKGMLMCF---IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F   +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ V
Sbjct:    14 FRSVEKVVLLTFLAVVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLV 73

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W +G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    74 MPFGAIELVQDIWAYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 133

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGWYTTP--DHKQYRK--HHPNV--CIFVVNVYYA 207
                 + LML   W+LP  ISF PIM GW      D  + RK  H+ N   C+F+VN  YA
Sbjct:   134 TPLRIALMLGGCWVLPMFISFLPIMQGWNNIGIVDVIEKRKFSHNSNSTWCVFMVNKPYA 193

Query:   208 LISSSISFWIP 218
             +  S ++F+IP
Sbjct:   194 ITCSVVAFYIP 204

GO:0004683 "calmodulin-dependent protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007210 "serotonin receptor signaling pathway" evidence=ISO

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=ISO

GO:0007268 "synaptic transmission" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030816 "positive regulation of cAMP metabolic process" evidence=IEA

GO:0032098 "regulation of appetite" evidence=IEA

GO:0045761 "regulation of adenylate cyclase activity" evidence=IEA

GO:0050890 "cognition" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O70528	5HT4R_CAVPO	No assigned EC number	0.5027	0.4528	0.4458	yes	N/A
P97288	5HT4R_MOUSE	No assigned EC number	0.5138	0.4528	0.4458	yes	N/A
Q4LBB6	OCTB3_DROME	No assigned EC number	0.6830	0.4764	0.1449	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	382
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	4e-35
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	6e-12
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	7e-10
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	4e-06
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	7e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-05
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	2e-05
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	3e-05
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	5e-05
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	5e-05
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	5e-05
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	7e-05
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	1e-04
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	1e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	1e-04
pfam10169	124	pfam10169, Laps, Learning-associated protein	1e-04
pfam04557	83	pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthe	1e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	2e-04
pfam09135	112	pfam09135, Alb1, Alb1	2e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	2e-04
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	2e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	3e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	3e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	3e-04
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	4e-04
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	4e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	4e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	4e-04
pfam03343	603	pfam03343, SART-1, SART-1 family	4e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	4e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	5e-04
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	5e-04
pfam03343	603	pfam03343, SART-1, SART-1 family	5e-04
pfam03343	603	pfam03343, SART-1, SART-1 family	5e-04
pfam03343	603	pfam03343, SART-1, SART-1 family	5e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	5e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	5e-04
pfam08079	71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	5e-04
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	6e-04
pfam07771	120	pfam07771, TSGP1, Tick salivary peptide group 1	6e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	7e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	7e-04
pfam03343	603	pfam03343, SART-1, SART-1 family	7e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	7e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	7e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	8e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	8e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	8e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	8e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	8e-04
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	0.001
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.001
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.001
pfam04557	83	pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthe	0.001
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.001
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.001
pfam12589	85	pfam12589, WBS_methylT, Methyltransferase involved	0.001
pfam12589	85	pfam12589, WBS_methylT, Methyltransferase involved	0.001
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.001
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.002
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.002
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.002
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.002
pfam04557	83	pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthe	0.002
pfam04557	83	pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthe	0.002
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.002
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.002
pfam04419	38	pfam04419, 4F5, 4F5 protein family	0.002
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.002
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.003
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.003
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.003
pfam08079	71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	0.003
pfam10328	275	pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR	0.003
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.004
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.004
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.004
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
cd12932	118	cd12932, RRP7_like, RRP7 domain ribosomal RNA-proc	0.004

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score =  128 bits (325), Expect = 4e-35
 Identities = 49/160 (30%), Positives = 80/160 (50%)

Query: 66  VIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFS 125
           +++ +KLR  TN F+++LA ADLL  L + P+     +  +W FG  +C +     V   
Sbjct: 3   ILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNG 62

Query: 126 TASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTP 185
            ASIL L  IS+DRY AIV PL+Y  I       +++  VW+L  ++S  P++  W  T 
Sbjct: 63  YASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTV 122

Query: 186 DHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
           +         +         Y L+S+ + F +P  V++  
Sbjct: 123 EEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVC 162

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 15/188 (7%)

Query: 3   NTIYNSLNYTYNINYTSTNFS---NTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGN 59
           NT   +    Y   Y   +++       + TNSTI I         ++   I    ++GN
Sbjct: 8   NTTIENTTDYYYDTYYDEDYADCDLNIGYDTNSTILI---------VVYSTIFFFGLVGN 58

Query: 60  LLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS 119
           ++VI  V+   K++   + ++++LA +DLL  +  +PF     +  +W FG F C + + 
Sbjct: 59  IIVIY-VLTKTKIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSG 116

Query: 120 FDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIML 179
                   S+  +  +SVDRY AIV P++   I       ++   +WI+  II  TPI+ 
Sbjct: 117 LYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWII-SIIETTPILF 175

Query: 180 GWYTTPDH 187
            + T  DH
Sbjct: 176 VYTTKKDH 183

Length = 335

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 11  YTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHR 70
           Y  NI Y   N  N  ++P+ S  +I IF  II         I  + GN   II ++  +
Sbjct: 77  YENNITYELINIKNKCMYPSISE-YIKIFYIII--------FILGLFGNAA-IIMILFCK 126

Query: 71  KLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASIL 130
           K++ IT+ ++ +LA +DL+  +   PF  I +  D+W FG FMC V ++       +++ 
Sbjct: 127 KIKTITDIYIFNLAISDLIFVI-DFPF-IIYNEFDQWIFGDFMCKVISASYYIGFFSNMF 184

Query: 131 HLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIIS 173
            +  +S+DRY+AI+ P+ +      N  +++    WIL  II+
Sbjct: 185 LITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIIT 227

Length = 417

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
           K KK   KKKKKKKKKK K K+ 
Sbjct: 13  KGKKIDVKKKKKKKKKKNKSKEE 35

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 16/24 (66%), Positives = 21/24 (87%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
           AKK+ K++KKK+KKKKKKK KK +
Sbjct: 84  AKKRAKRQKKKQKKKKKKKAKKGN 107

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
           P  +     S  + AK+ +KK+K+K+K K KK+ +   
Sbjct: 383 PSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420

Length = 434

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 15/23 (65%), Positives = 15/23 (65%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
           K K KK   KKKKKKKKKK K  
Sbjct: 11  KLKGKKIDVKKKKKKKKKKNKSK 33

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
           N KK+K  KK KKKKK KKK +  
Sbjct: 183 NLKKRKDDKKNKKKKKAKKKGRIL 206

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
             K   KKKKKKKKKK K K++  +
Sbjct: 14  GKKIDVKKKKKKKKKKNKSKEEVVT 38

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
           KKKKKKKKKK K K++   +K+ 
Sbjct: 20  KKKKKKKKKKNKSKEEVVTEKEE 42

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 330 EGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
             S + + S+T +     +  +   V    KK+KKKKK+ KK+KK+KK KK+ 
Sbjct: 124 PPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEK 176

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
                 KKKKKKKKK K K++   +K++ 
Sbjct: 15  KKIDVKKKKKKKKKKNKSKEEVVTEKEEE 43

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
              K++KKK+KKKKKKK KK  KK
Sbjct: 86  KRAKRQKKKQKKKKKKKAKKGNKK 109

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 362 KKKKKKKKKKKKKKKKKKKKS 382
           KK+K  KK KKKKK KKK + 
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRI 205

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
           AK+KK+KKKKKKKKKKK  KK   
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKAAK 132

Length = 135

>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 347 TRNVRT-------HSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
            RN +T       +   +N ++ KK KKK++KKKKKKK  K 
Sbjct: 81  VRNKKTLRDQHGQYPAWMNQRQAKKLKKKREKKKKKKKGAKN 122

This is a family of 121-amino acid secretory proteins. Laps functions in the regulation of neuronal cell adhesion and/or movement and synapse attachment. Laps binds to the ApC/EBP (Aplysia CCAAT/enhancer binding protein) promoter and activates the transcription of ApC/EBP mRNA. Length = 124

>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
            KKKKKKKKKK +      K KK+
Sbjct: 23  VKKKKKKKKKKAEDTAATAKAKKA 46

This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function. Length = 83

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 17/24 (70%), Positives = 18/24 (75%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
            K+KKKKKKKKKKK  KK  KKK 
Sbjct: 112 KKQKKKKKKKKKKKTSKKAAKKKK 135

Length = 135

>gnl|CDD|220121 pfam09135, Alb1, Alb1

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 314 SRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRN-VRTHSVTLNAKKKKKKKKKKKKK 372
           SR +    SP I         +T     + T   R  +   S      KKK++KKK K+ 
Sbjct: 3   SRAARRAPSPSIDLDKS---SLTSLPRAKRTDRKRPGILAASKNEGVSKKKQRKKKPKRL 59

Query: 373 KKKKKKKKKS 382
            +K++K++K 
Sbjct: 60  TRKQRKRQKK 69

Alb1 is a nuclear shuttling factor involved in ribosome biogenesis. Length = 112

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 349 NVRTHSVTLNA----KKKKKKKKKKKKKKKKKKKKK 380
           +++  S TLN     K K +K  K  KKKK K K K
Sbjct: 179 DIKKVSSTLNVLINEKLKAEKAAKGGKKKKGKAKAK 214

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 3/26 (11%)

Query: 360 KKKKKKKK---KKKKKKKKKKKKKKS 382
           KK KKKK    K++KKKKK+KKKKK 
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKK 167

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 8/109 (7%)

Query: 281 LISSSISFWIPGFVMVTMYYRIYK---EAVRQRIALSRTSSNIVSP-----VIQSTSEGS 332
           L S+S+S  + G ++  + +           + + L+                Q   E  
Sbjct: 4   LWSTSLSLLLSGALVAALLFVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPP 63

Query: 333 AVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
                  T   TP              +KK KK K K K K K K K K
Sbjct: 64  EEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112

Length = 244

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 9/64 (14%)

Query: 327 STSEGSAVVTVSDTPQSTPVTR--NVRTHSVTLNAKKKKKKKKKKKK-------KKKKKK 377
           S SE S   T +   +   V               K+KK+KK KK+K       KKKKKK
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189

Query: 378 KKKK 381
           KKKK
Sbjct: 190 KKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
            +K K+KK+KKKKKKKKKKK  K 
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKK 129

Length = 135

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 17/24 (70%), Positives = 20/24 (83%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
             K+K K+KK+KKKKKKKKKKK S
Sbjct: 104 VLKEKAKQKKQKKKKKKKKKKKTS 127

Length = 135

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 14/24 (58%), Positives = 14/24 (58%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
              K K K KK   KKKKKKKKK 
Sbjct: 6   VGGKLKLKGKKIDVKKKKKKKKKK 29

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 14/23 (60%), Positives = 18/23 (78%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
           K  KK+ K++KKK+KKKKKKK  
Sbjct: 82  KTAKKRAKRQKKKQKKKKKKKAK 104

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 355 VTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
           V    K+K K+KK+KKKKKKKKKKK   
Sbjct: 101 VKQVLKEKAKQKKQKKKKKKKKKKKTSK 128

Length = 135

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 18/25 (72%), Positives = 20/25 (80%)

Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
           L  K K+KK+KKKKKKKKKKK  KK
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKK 129

Length = 135

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 354 SVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
           S   +  +  K KK KKKKKKKKK++K 
Sbjct: 264 SDYYDVSEMVKFKKPKKKKKKKKKRRKD 291

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 14/23 (60%), Positives = 20/23 (86%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
           KK+++KK +K+KKKKK+KKK K 
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKK 407

Length = 414

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 346 VTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKK 380
           V + ++  +     KKKKKKKKKKK  KK  KKKK
Sbjct: 101 VKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135

Length = 135

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 12/47 (25%)

Query: 341 PQSTPVTRNVRTHSVTLNAKKKKKKKKKK------KKKKKKKKKKKK 381
           P+ TP      + S  L   +KK KKKK       KKKKK+KKKKKK
Sbjct: 127 PEETP------SDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 360 KKKKKKKKKKKKKKKKKKKK 379
            K KK KKKKKKKKK++K  
Sbjct: 273 VKFKKPKKKKKKKKKRRKDL 292

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 361 KKKKKKKKKKKKKKKKKKKK 380
            K KK KKKKKKKKK++K  
Sbjct: 273 VKFKKPKKKKKKKKKRRKDL 292

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 362 KKKKKKKKKKKKKKKKKKKK 381
            K KK KKKKKKKKK++K  
Sbjct: 273 VKFKKPKKKKKKKKKRRKDL 292

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 15/22 (68%), Positives = 20/22 (90%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
           +K+KKKKK+KKK KK+KKK +K
Sbjct: 393 QKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 14/22 (63%), Positives = 20/22 (90%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
           KKK+++KK +K+KKKKK+KKK 
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKG 405

Length = 414

>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
           N K + K+ KK+  KK  +KKK+K
Sbjct: 9   NEKLRAKRAKKRAAKKAARKKKRK 32

This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Length = 71

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 14/23 (60%), Positives = 19/23 (82%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
            +K  KK+ K++KKK+KKKKKKK
Sbjct: 80  EEKTAKKRAKRQKKKQKKKKKKK 102

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 329 SEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
             G   +T S    S P       H      K KKKKKK KK KK KK  KK 
Sbjct: 73  QNGECHLTTSSGEPSHPDD-----HPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120

This contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis. Also present are peptides from a related tick species, Ixodes ricinus. They are characterized by a putative signal peptide indicative of secretion and conserved cysteine residues. Length = 120

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
            K+K K KK+ +  K   K++K S
Sbjct: 406 EKEKPKVKKRHRDTKNIGKRRKPS 429

Length = 434

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
             +KK+KKKKKKKKKKK  KK  K
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKAAK 132

Length = 135

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 352 THSVTLNAKKKKKKKKKKKKKKKKKKK 378
            + V+   K KK KKKKKKKKK++K  
Sbjct: 266 YYDVSEMVKFKKPKKKKKKKKKRRKDL 292

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 16/22 (72%), Positives = 20/22 (90%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
           KK +K+KKKKK+KKK KK+KKK
Sbjct: 390 KKPQKRKKKKKRKKKGKKRKKK 411

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 15/23 (65%), Positives = 19/23 (82%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
            K +K+KKKKK+KKK KK+KKK 
Sbjct: 390 KKPQKRKKKKKRKKKGKKRKKKG 412

Length = 414

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
           K+K+K+K K KK+ +  K   K
Sbjct: 403 KEKEKEKPKVKKRHRDTKNIGK 424

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 345 PVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
           P T+          +KK   K+ +KK+K+K+K K KK
Sbjct: 378 PKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKK 414

Length = 434

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 17/24 (70%), Positives = 18/24 (75%)

Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
             +KKKKKKKKKKK  KK  KKKK
Sbjct: 112 KKQKKKKKKKKKKKTSKKAAKKKK 135

Length = 135

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 14/24 (58%), Positives = 20/24 (83%)

Query: 358 NAKKKKKKKKKKKKKKKKKKKKKK 381
              KKK+++KK +K+KKKKK+KKK
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKK 404

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 14/23 (60%), Positives = 19/23 (82%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
            +K+KKKKK+KKK KK+KKK + 
Sbjct: 392 PQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 15/82 (18%), Positives = 35/82 (42%)

Query: 232 LLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIP 291
            +++  VW+L  ++S  P++  W  T +         +         Y L+S+ + F +P
Sbjct: 96  KVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLP 155

Query: 292 GFVMVTMYYRIYKEAVRQRIAL 313
             V++  Y  I +   ++  + 
Sbjct: 156 LLVILVCYTLILRTLRKRARSG 177

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
            KK+K+K+K K KK+ +  K   
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIG 423

Length = 434

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 357 LNAKKKKKKKKKKKKKKKKKKKK 379
           L  +K  KK KKKKK KKK +  
Sbjct: 184 LKKRKDDKKNKKKKKAKKKGRIL 206

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
             KKKKKKKKKK +      K  
Sbjct: 22  LVKKKKKKKKKKAEDTAATAKAK 44

This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function. Length = 83

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 14/23 (60%), Positives = 20/23 (86%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
           K+++KK +K+KKKKK+KKK KK 
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKR 408

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 15/22 (68%), Positives = 20/22 (90%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
           +KK +K+KKKKK+KKK KK+KK
Sbjct: 389 EKKPQKRKKKKKRKKKGKKRKK 410

Length = 414

>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in Williams-Beuren syndrome

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKK----KKK 380
            +    V   +++ ++KKKKKKK KKK K    +KK
Sbjct: 26  QIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKK 61

This domain family is found in eukaryotes, and is typically between 72 and 83 amino acids in length. The family is found in association with pfam08241. This family is made up of S-adenosylmethionine-dependent methyltransferases. The proteins are deleted in Williams-Beuren syndrome (WBS), a complex developmental disorder with multisystemic manifestations including supravalvular aortic stenosis (SVAS) and a specific cognitive phenotype. Length = 85

>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in Williams-Beuren syndrome

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 349 NVRTHSVTLNAKKKKKKKKKKKKKKKKKKK----KKK 381
                S      ++ ++KKKKKKK KKK K    +KK
Sbjct: 25  EQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKK 61

This domain family is found in eukaryotes, and is typically between 72 and 83 amino acids in length. The family is found in association with pfam08241. This family is made up of S-adenosylmethionine-dependent methyltransferases. The proteins are deleted in Williams-Beuren syndrome (WBS), a complex developmental disorder with multisystemic manifestations including supravalvular aortic stenosis (SVAS) and a specific cognitive phenotype. Length = 85

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 330 EGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
           E S   TVS T   +         +       K KKKK++K+K++KKKKKK  
Sbjct: 247 EASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHH 299

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 13/23 (56%), Positives = 19/23 (82%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
            ++K  KK+ K++KKK+KKKKKK
Sbjct: 79  DEEKTAKKRAKRQKKKQKKKKKK 101

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 15/23 (65%), Positives = 19/23 (82%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKKS 382
           KKK+KKKKKKK KK  KK++K+ 
Sbjct: 92  KKKQKKKKKKKAKKGNKKEEKEG 114

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
            K+K+K K KK+ +  K   K++
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRR 426

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
            +K+K K KK+ +  K   K++K
Sbjct: 405 KEKEKPKVKKRHRDTKNIGKRRK 427

Length = 434

>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKKS 382
           L  KKKKKKKKK +      K KK +
Sbjct: 22  LVKKKKKKKKKKAEDTAATAKAKKAT 47

This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function. Length = 83

>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
           A   KKKKKKKKKK +      K+
Sbjct: 20  ADLVKKKKKKKKKKAEDTAATAKA 43

This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function. Length = 83

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
           AK K KK  K K ++K+K K++K
Sbjct: 54  AKAKAKKALKAKIEEKEKAKREK 76

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 14/22 (63%), Positives = 20/22 (90%)

Query: 360 KKKKKKKKKKKKKKKKKKKKKK 381
           ++KK +K+KKKKK+KKK KK+K
Sbjct: 388 EEKKPQKRKKKKKRKKKGKKRK 409

Length = 414

>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 358 NAKKKKKKKKKKKKKKKKKKKKKKS 382
           NAKK  KKKKK  K + K   K   
Sbjct: 14  NAKKAAKKKKKGAKSQLKAAAKALE 38

Members of this family are short proteins that are rich in aspartate, glutamate, lysine and arginine. Although the function of these proteins is unknown, they are found to be ubiquitously expressed. Length = 38

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
            KKKK+ K K  K+  KKKKKK  
Sbjct: 84  LKKKKRVKTKAYKEPTKKKKKKDP 107

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 10/25 (40%), Positives = 21/25 (84%)

Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
           L  +++K++++K +KK+K+K+ KKK
Sbjct: 8   LEQRRRKREQRKARKKQKRKEAKKK 32

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
           AK KK  K K ++K+K K++K++ 
Sbjct: 56  AKAKKALKAKIEEKEKAKREKEEK 79

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 356 TLNAKKKKKKKKKKKKKKKKKKKKKK 381
               K  KKK+++KK +K+KKKKK+K
Sbjct: 377 EKYPKPPKKKREEKKPQKRKKKKKRK 402

Length = 414

>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 357 LNAKKKKKKKKKKKKKKKKKKKKKK 381
           L AK+ KK+  KK  +KKK+K   K
Sbjct: 12  LRAKRAKKRAAKKAARKKKRKLIFK 36

This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Length = 71

>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor Srx

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 50  FIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
            I +  I+ N L+    +K   L+        + A ++ ++    + +   ++L D  + 
Sbjct: 2   LISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSFL 61

Query: 110 GYFMCDVWNSFDVYFS-TASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWIL 168
              +        +      S L    IS++R+ A+  P +Y  I +     ++++ +WI+
Sbjct: 62  PELLNSHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIWII 121

Query: 169 PGIISFTPIM 178
             IIS     
Sbjct: 122 AIIISTLFYF 131

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srx is part of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. Length = 275

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 14/24 (58%), Positives = 18/24 (75%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
            KKKKK+ KK+KK+KK KK+K   
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVE 179

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKKS 382
             K KK  K K ++K+K K++K+ 
Sbjct: 55  KAKAKKALKAKIEEKEKAKREKEE 78

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 359 AKKKKKKKKKKKKKKKKKKKKKK 381
             KKKK+ K K  K+  KKKKKK
Sbjct: 83  RLKKKKRVKTKAYKEPTKKKKKK 105

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 310 RIALSRTSSN-IVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAKKKKKKKKK 368
           + A S+ SS+  V  V +  S+G A  T     +      + +         K++KKKKK
Sbjct: 65  KCAESKLSSDEAVKRVEKGGSKGPAAKTKP--AKEPK-NESGKEEEKEKEQVKEEKKKKK 121

Query: 369 KKKKKKKKKKKKK 381
           +K K++ K +K K
Sbjct: 122 EKPKEEPKDRKPK 134

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A (Rrp7A), and similar proteins

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKK 381
            R       A+++  + K K+K+KKKKKKK+ 
Sbjct: 57  TRGGRKGKTAREEAVEAKAKEKEKKKKKKKEL 88

This CD corresponds to the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by YCL031C gene from Saccharomyces cerevisiae. It is an essential yeast protein involved in pre-rRNA processing and ribosome assembly, and is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle. Rrp7A, also termed gastric cancer antigen Zg14, is the Rrp7p homolog mainly found in Metazoans. The cellular function of Rrp7A remains unclear currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RRP7 domain. Length = 118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
PHA03234	338	DNA packaging protein UL33; Provisional	100.0
KOG4219|consensus	423		100.0
PHA02834	323	chemokine receptor-like protein; Provisional	99.97
PHA03235	409	DNA packaging protein UL33; Provisional	99.97
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.97
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.96
KOG4220|consensus	503		99.95
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.91
KOG2087|consensus	363		99.87
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.47
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	99.28
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	99.04
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	99.03
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	99.01
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	98.83
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	98.73
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	98.56
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	98.05
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	97.85
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	97.64
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	97.59
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	97.22
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	97.17
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	97.16
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	96.92
KOG4193|consensus	610		96.67
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	96.59
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	96.04
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	95.81
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	95.8
PHA03235	409	DNA packaging protein UL33; Provisional	95.64
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	95.41
PF01534	328	Frizzled: Frizzled/Smoothened family membrane regi	93.87
PHA02834	323	chemokine receptor-like protein; Provisional	93.86
KOG4220|consensus	503		93.56
KOG4564|consensus	473		93.08
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	92.91
PF13853	144	7tm_4: Olfactory receptor	92.36
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	92.16
KOG4219|consensus	423		91.85
PHA02638	417	CC chemokine receptor-like protein; Provisional	90.62
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	89.13
PHA03087	335	G protein-coupled chemokine receptor-like protein;	88.23
PHA03234	338	DNA packaging protein UL33; Provisional	87.03
PF15086	74	UPF0542: Uncharacterised protein family UPF0542	86.64
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	84.2

>PHA03234 DNA packaging protein UL33; Provisional

Probab=100.00  E-value=7.5e-32  Score=251.56  Aligned_cols=281  Identities=13%  Similarity=0.076  Sum_probs=189.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhH
Q psy16861         39 FPFIIKGMLMCFIIITAILGNLLVIISVI--KHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV  116 (382)
Q Consensus        39 ~~~~~~~~~~~~i~i~gi~gN~~vl~vi~--~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~  116 (382)
                      .......++|.+++++|++||+++++++.  +++++|+++|+|+.|||++|++.++. +|+.+.. ..+.|.+|+..|++
T Consensus        30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~-~~~~w~fG~~lCk~  107 (338)
T PHA03234         30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLN-REALFNFNQAFCQC  107 (338)
T ss_pred             HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHH-HhCCccCchhHHHH
Confidence            46678899999999999999999999554  55666899999999999999999764 6665554 34579999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCC-CcccccCCC
Q psy16861        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD-HKQYRKHHP  195 (382)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~  195 (382)
                      .+++.....++|++++++||+|||++|++|.++..  ++++....+++.|+.+++.++|+.........+ ....|....
T Consensus       108 ~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~  185 (338)
T PHA03234        108 VLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHI  185 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccC
Confidence            99999999999999999999999999999987642  334444556667999999998886543221111 112232211


Q ss_pred             cccceehhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCCceee
Q psy16861        196 NVCIFVVNVYYA---LISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI  272 (382)
Q Consensus       196 ~~c~~~~~~~~~---~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (382)
                      +.  ......+.   ...++++|++|+++|++||..+.+++....                  ..+            ..
T Consensus       186 ~~--~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~------------------~~~------------~~  233 (338)
T PHA03234        186 SS--KKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT------------------EKK------------HK  233 (338)
T ss_pred             Cc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------hhh------------hh
Confidence            10  01111111   123445679999999999999988873310                  000            01


Q ss_pred             EeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccceeeec
Q psy16861        273 FVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRT  352 (382)
Q Consensus       273 ~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y~~~~  352 (382)
                      ...+....++..+++||+|+.++.+.+...  ..    .....+...   .. ..........-.-.+++.||++|...+
T Consensus       234 k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~--~~----~~~~~c~~~---~~-~~~~~~v~~~La~~nsclNPiIY~f~~  303 (338)
T PHA03234        234 KTLFFIRILILSFLCIQIPNIAILICEIAF--LY----IANNSCFGL---AQ-REILQIIIRLMPEIHCFSNPLVYAFTG  303 (338)
T ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHHHHHHH--Hh----cccCcchHH---HH-HHHHHHHHHHHHHhhhhhhHHHHHHhh
Confidence            155677788999999999999887654321  00    000000000   00 000000111123478999999999999


Q ss_pred             cccccchhcccch
Q psy16861        353 HSVTLNAKKKKKK  365 (382)
Q Consensus       353 ~~~~~~~~~~~~~  365 (382)
                      ++++++.++.-++
T Consensus       304 ~~FR~~~~~~~~~  316 (338)
T PHA03234        304 GDFRLRFTACFQD  316 (338)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887764443

>KOG4219|consensus

Probab=100.00  E-value=3.2e-33  Score=251.85  Aligned_cols=292  Identities=22%  Similarity=0.374  Sum_probs=220.0

Q ss_pred             CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCccccccc
Q psy16861         33 TIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYF  112 (382)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~  112 (382)
                      ....+.+...+.++++.++.+++++||.++++++..+|++|+.+|+|+.|||+||++++++..++.......+.|.+|..
T Consensus        27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f  106 (423)
T KOG4219|consen   27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSF  106 (423)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence            44566777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCC-----
Q psy16861        113 MCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDH-----  187 (382)
Q Consensus       113 ~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~-----  187 (382)
                      .|++..|+......+|++++++||+|||+||.||++.+  .+++...++++++|++|+++++|..+....+....     
T Consensus       107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~  184 (423)
T KOG4219|consen  107 YCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGES  184 (423)
T ss_pred             eeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcc
Confidence            99999999999999999999999999999999999854  68999999999999999999999876543222211     


Q ss_pred             ccccc--CCCcccceehhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcc
Q psy16861        188 KQYRK--HHPNVCIFVVNV----YYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHK  261 (382)
Q Consensus       188 ~~~~~--~~~~~c~~~~~~----~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (382)
                      ...|.  ..+..|......    .|.....++.|++|++++...|..+.++|.-...             .+-..+++++
T Consensus       185 ~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~-------------~gd~~d~~~~  251 (423)
T KOG4219|consen  185 RVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRI-------------PGDQQDRKHE  251 (423)
T ss_pred             eEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccC-------------ccchhchhhH
Confidence            11111  122223322222    2778899999999999999999999999954443             2222222222


Q ss_pred             cccccCCceeeEeecchhhhhhhhhhhhHhHHHHHHHHHH---HHHHHHHhHHHhhccCCCccccccccCCCCCcccccC
Q psy16861        262 QYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYR---IYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVS  338 (382)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~---I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (382)
                      +.++..+     ..+....++..|.+||+|+.+-.+++..   |.+..+-+.-=..                  .-+-.-
T Consensus       252 ~~kak~K-----~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~------------------~~WLaM  308 (423)
T KOG4219|consen  252 QLKAKKK-----VVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLA------------------IYWLAM  308 (423)
T ss_pred             HHHHHHH-----HHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence            2222211     5567888999999999999988777642   1111111000000                  000012


Q ss_pred             CCCCCCccceeeeccccccchhcc
Q psy16861        339 DTPQSTPVTRNVRTHSVTLNAKKK  362 (382)
Q Consensus       339 ~~~~~np~~y~~~~~~~~~~~~~~  362 (382)
                      .+++.||++|..-|++++..-++.
T Consensus       309 Sst~yNPiIY~~lN~Rfr~gf~~~  332 (423)
T KOG4219|consen  309 SSTCYNPIIYCFLNKRFRGGFRRA  332 (423)
T ss_pred             HHhhhccHhhhhhHHHHHHHHhhh
Confidence            457899999999998887766543

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=241.79  Aligned_cols=278  Identities=16%  Similarity=0.244  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhhHH
Q psy16861         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF  120 (382)
Q Consensus        41 ~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~  120 (382)
                      ..+..+++.+++++|++||+++++++.++++ +++.|+|+.|||++|++. ++.+|+.+.... ++|.+|+..|++.+++
T Consensus        28 ~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~~~~  104 (323)
T PHA02834         28 NYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLVLGV  104 (323)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhHHHH
Confidence            4567899999999999999999998888665 457899999999999987 557888766554 4699999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccC-CCcccccCCCcccc
Q psy16861        121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTP-DHKQYRKHHPNVCI  199 (382)
Q Consensus       121 ~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~c~  199 (382)
                      ...+..+|++++++||+|||.+|++|++++. .+.+++...++++|+++++.++|+... +.... ++...|.... .+.
T Consensus       105 ~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~-~~~~~~~~~~~C~~~~-~~~  181 (323)
T PHA02834        105 YFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVL-YYVDNTDNLKQCIFND-YHE  181 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHH-HHhccCCCceEEeccC-Ccc
Confidence            9999999999999999999999999998654 355677788889999999999887543 22211 1122232111 111


Q ss_pred             e-ehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCCceeeEeecch
Q psy16861        200 F-VVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVY  278 (382)
Q Consensus       200 ~-~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (382)
                      . .+...+.....++.|++|+++++++|..+.+.+.-..                    +.+          .+...+..
T Consensus       182 ~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~--------------------~~~----------~~k~~k~~  231 (323)
T PHA02834        182 NFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCK--------------------NKN----------KTRSIKII  231 (323)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------Ccc----------cceEEeeh
Confidence            1 1112233345678999999999999999987763210                    000          01245567


Q ss_pred             hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccceeeeccccccc
Q psy16861        279 YALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLN  358 (382)
Q Consensus       279 ~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y~~~~~~~~~~  358 (382)
                      ..++..+++||+|+.++.+.+...-       ......+..  ..............-...++..||++|...+++++++
T Consensus       232 ~~vv~~F~icWlPy~i~~~l~~~~~-------~~~~~~~~~--~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~  302 (323)
T PHA02834        232 LTVVTFTVVFWVPFNIVLFINSLQS-------VGLIDIGCY--HFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKV  302 (323)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHH-------hcCCCccch--HHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHH
Confidence            7788888999999988766542110       000000000  0000000000111223468999999999999999998


Q ss_pred             hhccc
Q psy16861        359 AKKKK  363 (382)
Q Consensus       359 ~~~~~  363 (382)
                      .++.-
T Consensus       303 ~~~~~  307 (323)
T PHA02834        303 FKNMF  307 (323)
T ss_pred             HHHHH
Confidence            87544

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.97  E-value=1.9e-30  Score=247.44  Aligned_cols=284  Identities=12%  Similarity=0.062  Sum_probs=187.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhH
Q psy16861         39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKL--RIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV  116 (382)
Q Consensus        39 ~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l--~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~  116 (382)
                      ..+.+..+++.+++++|++||+++++++.+.++.  ++..++|+.|||++|++. ++.+|+.+... ...|..++..|++
T Consensus        30 ~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck~  107 (409)
T PHA03235         30 AARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCKF  107 (409)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeehh
Confidence            3456889999999999999999999876543332  356679999999999987 55788776432 2223345789999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCc
Q psy16861        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPN  196 (382)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (382)
                      .+++...+..+|++++++||+|||++|++|.++.. .+++++..+++++|+++++.++|+.+..+....+..........
T Consensus       108 ~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~  186 (409)
T PHA03235        108 ASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYE  186 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcc
Confidence            99999999999999999999999999999986544 46888999999999999999998765432111111000001112


Q ss_pred             ccceeh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCC
Q psy16861        197 VCIFVV--------NVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHP  268 (382)
Q Consensus       197 ~c~~~~--------~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (382)
                      .|...+        ...|....+++.|++|+++|+++|..+.+++.....                  .++         
T Consensus       187 ~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~------------------~~~---------  239 (409)
T PHA03235        187 TCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY------------------KKR---------  239 (409)
T ss_pred             eeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------------hcc---------
Confidence            232211        123556677788999999999999999988753210                  000         


Q ss_pred             ceeeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccce
Q psy16861        269 NVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTR  348 (382)
Q Consensus       269 ~~~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y  348 (382)
                         .........++..+++||+|+.++.+.....  ..  ...  ..+...    .....-......-...+++.||++|
T Consensus       240 ---~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~--~~--~~~--~~~~~~----~~~~~~~~i~~~La~~ns~lNPiIY  306 (409)
T PHA03235        240 ---SRTLTFVCILLLSFLCLQTPFVAIMIFDSYA--TL--IWP--SDCEHI----NLRDAVSTLSRLVPNLHCLLNPILY  306 (409)
T ss_pred             ---hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH--Hh--cCC--CCchhh----hHHHHHHHHHHHHHHHHHhHhHHHH
Confidence               0133455666778999999998876543210  00  000  000000    0000000011112246889999999


Q ss_pred             eeeccccccchhcccch
Q psy16861        349 NVRTHSVTLNAKKKKKK  365 (382)
Q Consensus       349 ~~~~~~~~~~~~~~~~~  365 (382)
                      .+-+++++++.++.-++
T Consensus       307 ~~~~~~FRk~~~~~l~~  323 (409)
T PHA03235        307 AFLGNDFLKRFRQCFRG  323 (409)
T ss_pred             HHhhHHHHHHHHHHHhh
Confidence            99999999887765544

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.97  E-value=1.5e-28  Score=235.47  Aligned_cols=286  Identities=16%  Similarity=0.246  Sum_probs=196.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhhH
Q psy16861         40 PFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS  119 (382)
Q Consensus        40 ~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~  119 (382)
                      ......+++.+++++|++||+++++++.+ |++|++.|+++.|||++|++.. +.+|+.+... .++|.+|+..|++..+
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~~Ck~~~~  173 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDFMCKVISA  173 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccccccccchhhHHH
Confidence            44677888999999999999999987665 7788999999999999999884 5688877654 4679999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccC-CC-ccccc-CCCc
Q psy16861        120 FDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTP-DH-KQYRK-HHPN  196 (382)
Q Consensus       120 ~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~  196 (382)
                      +...+.++++++++++++|||++|++|.++++..+++++...++++|+++++.++|+.+....... .. .+... ....
T Consensus       174 l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~  253 (417)
T PHA02638        174 SYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNY  253 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCC
Confidence            999999999999999999999999999998877787888888999999999999998654221100 00 00000 0011


Q ss_pred             cccee----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccccccc
Q psy16861        197 VCIFV----------VNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH  266 (382)
Q Consensus       197 ~c~~~----------~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (382)
                      .|...          +...+.....++++++|++++++||..+.+++.-..                  ..++       
T Consensus       254 ~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~------------------~~~k-------  308 (417)
T PHA02638        254 QCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLK------------------KSKK-------  308 (417)
T ss_pred             eeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------cccc-------
Confidence            23211          122344455678899999999999999998873211                  0000       


Q ss_pred             CCceeeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCcc
Q psy16861        267 HPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPV  346 (382)
Q Consensus       267 ~~~~~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~  346 (382)
                           ....+....++..+++||+|+.++.++....-......  ......+...  ... ........-...+++.||+
T Consensus       309 -----~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~--~~~~~~c~~~--~l~-~~~~vt~~la~~~sclNPi  378 (417)
T PHA02638        309 -----TKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNS--IISEHICGFI--KLG-YAMMLAEAISLTHCCINPL  378 (417)
T ss_pred             -----chhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc--ccccccccHH--HHH-HHHHHHHHHHHHHHhhhHH
Confidence                 11446678888999999999999877653311000000  0000000000  000 0000001112357899999


Q ss_pred             ceeeeccccccchhccc
Q psy16861        347 TRNVRTHSVTLNAKKKK  363 (382)
Q Consensus       347 ~y~~~~~~~~~~~~~~~  363 (382)
                      +|.+.++++|+...+.-
T Consensus       379 IY~f~~~~FR~~l~~~~  395 (417)
T PHA02638        379 IYTLIGENFRMHLLMIF  395 (417)
T ss_pred             HHHHhCHHHHHHHHHHH
Confidence            99999999999886543

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.96  E-value=7.6e-30  Score=239.59  Aligned_cols=286  Identities=18%  Similarity=0.201  Sum_probs=200.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHh
Q psy16861         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW  117 (382)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  117 (382)
                      +....+..+++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++ ..|..+.....+.|..++..|++.
T Consensus        37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~  114 (335)
T PHA03087         37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIV  114 (335)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHH
Confidence            34556788899999999999999999998888 8899999999999999998866 477766666667888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCcc
Q psy16861        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNV  197 (382)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (382)
                      .++...+..+|++++++||+|||++|++|++|....+.+++..+++++|+++++.++|+..............|......
T Consensus       115 ~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C~~~~~~  194 (335)
T PHA03087        115 SGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMFYNN  194 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceEEecCCC
Confidence            99999999999999999999999999999999888899999999999999999999887554332222222223222111


Q ss_pred             cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCCceeeEeecc
Q psy16861        198 CIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNV  277 (382)
Q Consensus       198 c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (382)
                      ....+...+......+.+++|+++++++|..+.+.+.-..                     ..+        ......+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~---------------------~~~--------~~~k~~k~  245 (335)
T PHA03087        195 KTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGIN---------------------KSK--------KNKKAIKL  245 (335)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------cch--------hcchHHHh
Confidence            1111112223344677899999999999999976663211                     000        00114566


Q ss_pred             hhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccceeeecccccc
Q psy16861        278 YYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTL  357 (382)
Q Consensus       278 ~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y~~~~~~~~~  357 (382)
                      ...++..+++||+|+.+..+.+..-......        ...  ..............-...++..||.+|...++++++
T Consensus       246 l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~  315 (335)
T PHA03087        246 VLIIVILFVIFWLPFNVSVFVYSLHILHFKS--------GCK--AVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNK  315 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCc--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHH
Confidence            7788888999999998877665321100000        000  000000000001112246789999999999999998


Q ss_pred             chhcccc
Q psy16861        358 NAKKKKK  364 (382)
Q Consensus       358 ~~~~~~~  364 (382)
                      +.++..+
T Consensus       316 ~~~~~~~  322 (335)
T PHA03087        316 HKKKSLK  322 (335)
T ss_pred             HHHHHHH
Confidence            7665553

>KOG4220|consensus

Probab=99.95  E-value=4.4e-29  Score=224.61  Aligned_cols=205  Identities=27%  Similarity=0.546  Sum_probs=171.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHh
Q psy16861         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW  117 (382)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  117 (382)
                      .++.+..+++...+.++.++||++|++.+.-++++++..|+|+.+||++||+.|.+.+|+...+.+-+.|..|..+|.++
T Consensus        27 ~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlW  106 (503)
T KOG4220|consen   27 TWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLW  106 (503)
T ss_pred             ceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHH
Confidence            45556777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCcc
Q psy16861        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNV  197 (382)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (382)
                      ..+.++...+|++.++.|++|||+.|.+|+.|...+|.+|+..+|++.|++|+++-.|. +..|....+..   ...++.
T Consensus       107 LalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPa-Il~WqyivGkr---Tv~~~e  182 (503)
T KOG4220|consen  107 LALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPA-ILFWQYIVGKR---TVPDGE  182 (503)
T ss_pred             HHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHH-HHhhHhheeee---ecCCCc
Confidence            99999999999999999999999999999999999999999999999999999999665 44442221110   011122


Q ss_pred             cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCCceeeEeecc
Q psy16861        198 CIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNV  277 (382)
Q Consensus       198 c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (382)
                      |..                                                                       .+..+.
T Consensus       183 C~i-----------------------------------------------------------------------QFlsnp  191 (503)
T KOG4220|consen  183 CYI-----------------------------------------------------------------------QFLSNP  191 (503)
T ss_pred             eEE-----------------------------------------------------------------------EeecCc
Confidence            211                                                                       112233


Q ss_pred             hhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccC
Q psy16861        278 YYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTS  317 (382)
Q Consensus       278 ~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~  317 (382)
                      .+..-.++..|++|..+|.++|++||++.++|.|......
T Consensus       192 ~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq  231 (503)
T KOG4220|consen  192 AITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQ  231 (503)
T ss_pred             eeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            4445566778999999999999999999999888765443

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.91  E-value=4.3e-24  Score=191.53  Aligned_cols=222  Identities=25%  Similarity=0.486  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhhHHHHHHHHHHHHHHHHHHH
Q psy16861         58 GNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISV  137 (382)
Q Consensus        58 gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iai  137 (382)
                      ||+++++++.++|+++++.++++.|||++|++.++...|..+.....+.|..++..|++..++..++...+.++++++++
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~   80 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI   80 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999999988888877777889999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCcccceeh----hhHHHHHHHHH
Q psy16861        138 DRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVV----NVYYALISSSI  213 (382)
Q Consensus       138 dRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~----~~~~~~~~~~~  213 (382)
                      |||++|++|++|++..+++++...++++|+++++.++|+.+........+..     ...|....    ...+.....++
T Consensus        81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~C~~~~~~~~~~~~~~~~~~~  155 (257)
T PF00001_consen   81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGS-----QSFCFIDFSSSSSQIYFIYFFIV  155 (257)
T ss_dssp             HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCC-----CEEEEESCSSSHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999996653322222211     23444332    34688889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCCceeeEeecchhhhhhhhhhhhHhHH
Q psy16861        214 SFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGF  293 (382)
Q Consensus       214 ~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~P~~  293 (382)
                      .+++|+++++++|..+.+.+.....-.               ....++..++. ........+....++..++++|+|+.
T Consensus       156 ~~~~p~~~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~f~~~~~P~~  219 (257)
T PF00001_consen  156 FFILPLIIILICYIRILRKLRRQRKRI---------------KSQSSSSSRRR-SRRERRAARTLLIIVLVFLLCWLPYF  219 (257)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHCT---------------CCHTSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeeeeeeccccccccccccccc---------------ccccccccccc-cccccccccccccccccccccCCcee
Confidence            999999999999999998886555410               00000000000 00111144556777788899999998


Q ss_pred             HHHHHHH
Q psy16861        294 VMVTMYY  300 (382)
Q Consensus       294 ii~~~y~  300 (382)
                      +..+...
T Consensus       220 i~~~~~~  226 (257)
T PF00001_consen  220 ILSLLSV  226 (257)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8766543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG2087|consensus

Probab=99.87  E-value=1.5e-22  Score=181.20  Aligned_cols=289  Identities=17%  Similarity=0.130  Sum_probs=209.6

Q ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhc-----
Q psy16861         30 TNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT-----  104 (382)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~-----  104 (382)
                      ..-.+-++...+.++.+..+++..+++.||.+|+......+...++..+++.|||++|+++++....+...+...     
T Consensus        13 da~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~   92 (363)
T KOG2087|consen   13 DAFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYY   92 (363)
T ss_pred             CCCCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHH
Confidence            344455666777888899999999999999999998888877778889999999999999998766655554422     


Q ss_pred             --CcccccccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhccc
Q psy16861        105 --DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWY  182 (382)
Q Consensus       105 --~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~  182 (382)
                        ..|..+...|++.||+..++...|+++++.+++||++.|++|++-.+.-..+....+++..|+.+++.++.| +++..
T Consensus        93 ~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~P-l~g~s  171 (363)
T KOG2087|consen   93 KHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLP-LFGIS  171 (363)
T ss_pred             HHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhcc-ccCCC
Confidence              134457789999999999999999999999999999999999998777666668999999999999999999 45555


Q ss_pred             ccCCCcccccCCCcccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccc
Q psy16861        183 TTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQ  262 (382)
Q Consensus       183 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (382)
                      .++....+..-+...|....   |....++....+-+++|+++|+.+...+                     ++...+..
T Consensus       172 ~Y~~~~vClPL~~~~~~s~g---~y~~~~l~~N~lafiiia~~Y~~iy~~l---------------------~~~~~~~~  227 (363)
T KOG2087|consen  172 SYGASSVCLPLHIEEPLSTG---YYLVALLGLNLLAFIIIAFSYGKIYCSL---------------------RKGDLSAT  227 (363)
T ss_pred             CCcccceeeecccCCccchh---HHHHHHHHHHHHHHHHHHHHhhhhheee---------------------ecCCCccc
Confidence            55554333333333332222   6777788888899999999997776433                     11111111


Q ss_pred             ccccCCceeeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCC
Q psy16861        263 YRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQ  342 (382)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (382)
                            ..+...++....++.+-.+||.|..++-+.-..                  ...........+..++..+.|++
T Consensus       228 ------~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~------------------~~~li~~~~sk~llv~flPlns~  283 (363)
T KOG2087|consen  228 ------LISTSVAKRMAFLVFTDCICWCPIAFFKFSALI------------------GVELISVSYSKWLLVFFLPLNSC  283 (363)
T ss_pred             ------cchhhhhhCeeEEEEccccccCchheeeeHHhc------------------CCcccChhhceeEEEEEEEcccc
Confidence                  111114455667778888899996644322000                  00111112234567788899999


Q ss_pred             CCccceeeeccccccchhcccchhh
Q psy16861        343 STPVTRNVRTHSVTLNAKKKKKKKK  367 (382)
Q Consensus       343 ~np~~y~~~~~~~~~~~~~~~~~~~  367 (382)
                      .||.+|.+-++.++++.+....+..
T Consensus       284 ~NP~LYa~fT~~fk~d~~~l~~k~~  308 (363)
T KOG2087|consen  284 LNPFLYAFFTPVFKEDLFLLLSKVG  308 (363)
T ss_pred             cCchhHHHcCHHHHHHHHHHHhhcc
Confidence            9999999999999988876655553

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.47  E-value=3.7e-13  Score=121.13  Aligned_cols=118  Identities=26%  Similarity=0.425  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhhHHHHHHHHHHHHHH
Q psy16861         53 ITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHL  132 (382)
Q Consensus        53 i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l  132 (382)
                      ++|++||..++.++.++|++|+|.+++++.+|++|++.++..+|......  +........|-.+.+...++.......+
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~   79 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM   79 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999887777766333  2335677899999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHH
Q psy16861        133 CCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGII  172 (382)
Q Consensus       133 ~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~  172 (382)
                      ++|++||++||+.|.+|+...+.+..........+.+...
T Consensus        80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~  119 (257)
T PF10320_consen   80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFF  119 (257)
T ss_pred             HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHH
Confidence            9999999999999999999877775444444444444444

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.28  E-value=8.8e-11  Score=107.04  Aligned_cols=183  Identities=19%  Similarity=0.278  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhH-hhHHHHHHHHHHH
Q psy16861         51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV-WNSFDVYFSTASI  129 (382)
Q Consensus        51 i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~-~~~~~~~~~~~s~  129 (382)
                      +.++|++.|.+++..+.+.++++++.+.+-.+.|++|.+.++..+-........+........... .+.....+...+.
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~   82 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP   82 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999987544333333333332333333444 3777778888999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhh-cc--cccCCCcccccCCCcccceehhhHH
Q psy16861        130 LHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIML-GW--YTTPDHKQYRKHHPNVCIFVVNVYY  206 (382)
Q Consensus       130 ~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~c~~~~~~~~  206 (382)
                      ++-.+||++|+.+|..|.+|++..+.+.+..++.++|++++....++... +-  ....+........++.|...     
T Consensus        83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~-----  157 (274)
T PF10328_consen   83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNY-----  157 (274)
T ss_pred             HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchh-----
Confidence            99999999999999999999999999999999999999999776555332 11  11111111111223355433     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16861        207 ALISSSISFWIPGFVMVTMLVVNTVLLMLSNV  238 (382)
Q Consensus       207 ~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~  238 (382)
                      ...........-.+++..+++.+..++.....
T Consensus       158 ~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~  189 (274)
T PF10328_consen  158 SWYFDFYKNFILVIISNILNIITFIKLRKFRK  189 (274)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            22222333344455666677777777755443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.04  E-value=1e-08  Score=95.64  Aligned_cols=229  Identities=14%  Similarity=0.181  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHhHhHHHHHHHhcC---------cccccccchhHhhHH
Q psy16861         51 IIITAILGNLLVIISVIKHRKLRI-ITNYFVVSLAFADLLVALCVMPFNAIVSLTD---------EWYFGYFMCDVWNSF  120 (382)
Q Consensus        51 i~i~gi~gN~~vl~vi~~~~~l~~-~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~---------~~~~~~~~C~~~~~~  120 (382)
                      +.++|+++|.+-++++.| |.+|+ +.|.+++.+|++|++..+..++..+......         ..........+...+
T Consensus         6 ~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l   84 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL   84 (318)
T ss_pred             EeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence            468999999999997765 55665 8999999999999999888777766544332         111222334455677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCC--cccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCC----CcccccCC
Q psy16861        121 DVYFSTASILHLCCISVDRYYAIVKPLQYP--IIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD----HKQYRKHH  194 (382)
Q Consensus       121 ~~~~~~~s~~~l~~iaidRy~~I~~p~~~~--~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~----~~~~~~~~  194 (382)
                      ...+...|.|..++||+.|++++.+|.+.+  ...+++.+...+.++++++++.+.+..+.......+    ..+.|...
T Consensus        85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~  164 (318)
T PF10324_consen   85 SDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGF  164 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeec
Confidence            888899999999999999999999998753  355677788888888999988887765322211111    11223211


Q ss_pred             C---ccccee--h-------h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCC
Q psy16861        195 P---NVCIFV--V-------N----VYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTP  258 (382)
Q Consensus       195 ~---~~c~~~--~-------~----~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  258 (382)
                      +   ......  .       +    ..+.....++.-++|.++..+..+...+.+.-...                    
T Consensus       165 ~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~--------------------  224 (318)
T PF10324_consen  165 PENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKK--------------------  224 (318)
T ss_pred             cccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccH--------------------
Confidence            1   000000  0       0    11222233444677887777776666655533332                    


Q ss_pred             CcccccccCCceeeEeecchhhhhhhhhhhhHhHHHHHHHHH
Q psy16861        259 DHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYY  300 (382)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~  300 (382)
                      +++...+....+.+........+...+++.=+|..++.+...
T Consensus       225 ~r~~~~~~~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~  266 (318)
T PF10324_consen  225 RRKKLSSSKSKKSDRTTKLILFMTISFLISELPQGIIFLLES  266 (318)
T ss_pred             hhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000000122222445666677777778888887766644

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=99.03  E-value=2.8e-08  Score=85.58  Aligned_cols=77  Identities=17%  Similarity=0.188  Sum_probs=64.9

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy16861         70 RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKP  146 (382)
Q Consensus        70 ~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p  146 (382)
                      ++++.-.+-++.||.++|++.++..+...+.....+....+...|..+|++..+...++-+..++||+.-|+.+.+|
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~  106 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP  106 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34456667799999999999988766545555555555667899999999999999999999999999999999998

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=99.01  E-value=5.1e-08  Score=89.80  Aligned_cols=131  Identities=15%  Similarity=0.158  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHh
Q psy16861         41 FIIKGMLMCFIIITAILGNLLVIISVIKH---RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW  117 (382)
Q Consensus        41 ~~~~~~~~~~i~i~gi~gN~~vl~vi~~~---~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  117 (382)
                      ..+..++..+..++|++||+.++.+-..+   ++.-+|.+..+.+||+++++.............+.......+..++..
T Consensus         6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (303)
T PF05296_consen    6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKII   85 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHH
Confidence            45667888999999999999999877754   333469999999999999998776555555555556566677889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccch----hhhhhhhhHHhHHHHH
Q psy16861        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQ----NTVLLMLSNVWILPGI  171 (382)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~----~~~~~~i~~~W~~s~~  171 (382)
                      .++..+....|.+..+++++--++.|+...+.--..=+    +.+..++.+.++++++
T Consensus        86 ~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~  143 (303)
T PF05296_consen   86 DFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFL  143 (303)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999875432211112    2234455666666663

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=98.83  E-value=3e-07  Score=84.00  Aligned_cols=128  Identities=23%  Similarity=0.332  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhhHHHH
Q psy16861         43 IKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDV  122 (382)
Q Consensus        43 ~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~  122 (382)
                      ....+..+..+++++|-++++..++..|++|++.+-++.-++++|++..+..+..    ...+....++..|.+++++..
T Consensus         8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~----~~~~~~~~~s~lC~~Qafliq   83 (303)
T PF05462_consen    8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIM----TLSPSAGENSFLCQFQAFLIQ   83 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH----HhcccCCCCCcchhhHhHHHH
Confidence            4456667778999999999999999999999999999999999999876543322    122333456788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHh
Q psy16861        123 YFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIM  178 (382)
Q Consensus       123 ~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~  178 (382)
                      ++..++.+-.++||++=|+.+++....    .++.-..-.+.+|.++++.++.+..
T Consensus        84 ~f~~as~lWt~~iA~nly~~~~~~~~~----~~k~e~~Y~l~~wGiPli~a~i~l~  135 (303)
T PF05462_consen   84 FFMLASFLWTLCIAFNLYLTFVKRYDE----LEKLEKYYHLVCWGIPLIPAVIPLI  135 (303)
T ss_pred             HhhHHHHHHHHHHHHHhhheeEEcCcc----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998875321    2344455778889999998887743

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=98.73  E-value=2.8e-07  Score=84.66  Aligned_cols=137  Identities=12%  Similarity=0.141  Sum_probs=96.0

Q ss_pred             cCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCc
Q psy16861         27 LFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE  106 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~  106 (382)
                      +++.+++.......+...++.+.+.+++-.+....++.++.+++..|.+.+-++.-|++.|++.....-...-.....  
T Consensus        18 ~Cs~~e~~~~~g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~--   95 (313)
T PF10321_consen   18 NCSEEEWSESYGVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIF--   95 (313)
T ss_pred             CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhc--
Confidence            333333444446666788899999999999999999999998887778999999999999998855422222222222  


Q ss_pred             ccccccchhHh------hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHH
Q psy16861        107 WYFGYFMCDVW------NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWIL  168 (382)
Q Consensus       107 ~~~~~~~C~~~------~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~  168 (382)
                         |...|...      |.+...+-.++-..-..++++|..-+..|.........++....+.+..++
T Consensus        96 ---G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY  160 (313)
T PF10321_consen   96 ---GAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIY  160 (313)
T ss_pred             ---CccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHH
Confidence               34455543      444555667788888899999999999987766666666665555444433

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.56  E-value=2.8e-07  Score=84.23  Aligned_cols=125  Identities=18%  Similarity=0.335  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCC----cchhHHHHHHHHHHHHHHHHhHhHHHHHHHh---cC-cccccccchhHhhHHHHH
Q psy16861         52 IITAILGNLLVIISVIKHRKL----RIITNYFVVSLAFADLLVALCVMPFNAIVSL---TD-EWYFGYFMCDVWNSFDVY  123 (382)
Q Consensus        52 ~i~gi~gN~~vl~vi~~~~~l----~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~---~~-~~~~~~~~C~~~~~~~~~  123 (382)
                      .++.++..+.++.++.+.|+.    +++.+-++.+-+++|++..+...........   .+ ....++..-++.......
T Consensus         5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~   84 (283)
T PF10323_consen    5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY   84 (283)
T ss_pred             EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence            455667778888878776553    4799999999999999986654433332222   11 111222334566666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccC-CCCcccchhhhhhhhhHHhHHHHHHHHhh
Q psy16861        124 FSTASILHLCCISVDRYYAIVKPL-QYPIIMNQNTVLLMLSNVWILPGIISFTP  176 (382)
Q Consensus       124 ~~~~s~~~l~~iaidRy~~I~~p~-~~~~~~t~~~~~~~i~~~W~~s~~~~~~~  176 (382)
                      ....-....+.+|++||.+|++|. ++....++.+...++++-|+.+.+.++|-
T Consensus        85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~  138 (283)
T PF10323_consen   85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPF  138 (283)
T ss_pred             HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeee
Confidence            778888899999999999999999 77778888899999999999999999774

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.05  E-value=9e-05  Score=66.19  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCC
Q psy16861         72 LRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYP  150 (382)
Q Consensus        72 l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~-~p~~~~  150 (382)
                      ..+|.+..+.+||++|.++.+.-........+.. ..+++..||+..++..++...|+.+.+++++  |+||. -|....
T Consensus         7 r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~-~~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItISP~~s~   83 (265)
T PF03402_consen    7 RLKPIDLILIHLALANILVLLSRGIPQTMAFFGW-KFFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAITISPSNSR   83 (265)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc-ccCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEecCCch
Confidence            3569999999999999998765333333333322 2468999999999999999999999999999  77776 343221


Q ss_pred             ----cccchhhhhhhhhHHhHHHHHHHHh
Q psy16861        151 ----IIMNQNTVLLMLSNVWILPGIISFT  175 (382)
Q Consensus       151 ----~~~t~~~~~~~i~~~W~~s~~~~~~  175 (382)
                          +...++.....+...|++..++...
T Consensus        84 w~~lK~k~pk~i~~~~~~~Wilnlli~~~  112 (265)
T PF03402_consen   84 WAELKVKAPKYIGPSCLFCWILNLLININ  112 (265)
T ss_pred             hhhhhhhcCCccccHHHHHHHHHHhhhcc
Confidence                1224445566677789988877643

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.85  E-value=0.0023  Score=57.71  Aligned_cols=114  Identities=15%  Similarity=0.087  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhc---CcccccccchhHh
Q psy16861         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT---DEWYFGYFMCDVW  117 (382)
Q Consensus        41 ~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~---~~~~~~~~~C~~~  117 (382)
                      ..+..++-.+...+....|..++..+...|+.+++...++--..+.|.+.+....+........   .+.......=-..
T Consensus         5 ~~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~   84 (273)
T PF10316_consen    5 AIIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYI   84 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeeh
Confidence            3455667777888899999999998887777555666677778999999988766554443332   1111011121222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc
Q psy16861        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMN  154 (382)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t  154 (382)
                      +................||+||..|+..|..|+..+.
T Consensus        85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~  121 (273)
T PF10316_consen   85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRK  121 (273)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCc
Confidence            3344455577888889999999999999987765533

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.64  E-value=0.0032  Score=57.90  Aligned_cols=126  Identities=17%  Similarity=0.212  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcC----------cccccccch
Q psy16861         46 MLMCFIIITAILGNLLVIISVIKH-RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD----------EWYFGYFMC  114 (382)
Q Consensus        46 ~~~~~i~i~gi~gN~~vl~vi~~~-~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~----------~~~~~~~~C  114 (382)
                      +++.+.+++|++.|++.++.+.++ ++.-+..-+++.|-|+.|++.++.....+.-....+          ...+|...|
T Consensus         3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C   82 (292)
T PF10317_consen    3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFC   82 (292)
T ss_pred             EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHH
Confidence            456788999999999999888765 333357778999999999998776443332222111          123577889


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhh
Q psy16861        115 DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTP  176 (382)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~  176 (382)
                      .....+...+...+.+.+.+--..||..+.++..     ++++....+.+.+..++...+..
T Consensus        83 ~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~  139 (292)
T PF10317_consen   83 FFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFF  139 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888889999999999999999987633     55666777777777777776544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.59  E-value=0.011  Score=55.27  Aligned_cols=129  Identities=9%  Similarity=0.035  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHh---c---C-cccccccchh
Q psy16861         43 IKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSL---T---D-EWYFGYFMCD  115 (382)
Q Consensus        43 ~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~---~---~-~~~~~~~~C~  115 (382)
                      ....+-.++.++|++.++..++.+..++..|...-+++....++.++.++..+.....+..   .   + +...+...|-
T Consensus        18 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~   97 (324)
T PF10292_consen   18 LSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCF   97 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHH
Confidence            3445577788888888888888888777788777788888888888876643333322222   1   1 2234666788


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHH
Q psy16861        116 VWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGII  172 (382)
Q Consensus       116 ~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~  172 (382)
                      +......++......+..++++||++|-++.-+|... ++.-...+..+-|++++..
T Consensus        98 ~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~  153 (324)
T PF10292_consen   98 ILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLI  153 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999888754 3333333444445444443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=97.22  E-value=0.082  Score=46.85  Aligned_cols=185  Identities=14%  Similarity=0.187  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHH--HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHh----HhHHHHHHHhcCcccccccchhHhhHHH
Q psy16861         48 MCFIIITAILGNL--LVIISVIKHRKLRIITNYFVVSLAFADLLVALC----VMPFNAIVSLTDEWYFGYFMCDVWNSFD  121 (382)
Q Consensus        48 ~~~i~i~gi~gN~--~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~----~~p~~~~~~~~~~~~~~~~~C~~~~~~~  121 (382)
                      +.+..+++.+.++  +++.++...+-.+-+..+|+..|.++-.+.+..    -.|..+......+.. .+..-.+..+..
T Consensus        19 Fv~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~-~s~~f~~~Sy~i   97 (305)
T PF04789_consen   19 FVLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFV-QSELFIFMSYLI   97 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHh-ccchhhHHHHHH
Confidence            3333344444333  444434433333457889999999988887654    334444333333322 233445777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcc-cccC---CC-cccccCCCc
Q psy16861        122 VYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW-YTTP---DH-KQYRKHHPN  196 (382)
Q Consensus       122 ~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~-~~~~---~~-~~~~~~~~~  196 (382)
                      .++.++-.+.-..+|+.|......-....+...+.-..+.+..+|++++........-+- ++++   .+ .-.|+....
T Consensus        98 df~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~  177 (305)
T PF04789_consen   98 DFCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNS  177 (305)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCe
Confidence            999999999999999999766654333334556777888999999999888655432111 1111   11 112222222


Q ss_pred             ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        197 VCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLM  234 (382)
Q Consensus       197 ~c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~  234 (382)
                      .-....+.........+.+.+|..+.+ .|+.+..++.
T Consensus       178 ~v~~~~P~~IqiiE~ilQ~~IPi~Il~-iYiAIIiKI~  214 (305)
T PF04789_consen  178 VVDISPPRGIQIIEIILQFGIPIFILV-IYIAIIIKII  214 (305)
T ss_pred             eEeeCCCCchhHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence            222334566677889999999987665 4566555553

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.17  E-value=0.0043  Score=56.38  Aligned_cols=122  Identities=13%  Similarity=0.217  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCC--C-cchhHHHHHHHHHHHHHHHHhHhHH-HHHHHhcC-------cccccccchhHhhH
Q psy16861         51 IIITAILGNLLVIISVIKHRK--L-RIITNYFVVSLAFADLLVALCVMPF-NAIVSLTD-------EWYFGYFMCDVWNS  119 (382)
Q Consensus        51 i~i~gi~gN~~vl~vi~~~~~--l-~~~~~~~i~nLai~Dll~~~~~~p~-~~~~~~~~-------~~~~~~~~C~~~~~  119 (382)
                      =++.+++.+..+++++.++++  . +++.+.+...-++.|++.-+...+. .+.....+       ..........+..+
T Consensus         7 Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~   86 (275)
T PF02118_consen    7 YGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYF   86 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHH
Confidence            367788889999998888877  4 6677777777777777664432221 12211000       01233456677778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHH
Q psy16861        120 FDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIIS  173 (382)
Q Consensus       120 ~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~  173 (382)
                      +...+..+-....+.++++|+-++..|.++++.-++. ...+++++.++.+...
T Consensus        87 l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~-~~~~i~~i~~~p~~~~  139 (275)
T PF02118_consen   87 LQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRY-YWIIIIIIFLLPFSFT  139 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhh-hhhheeeeeehhHHHH
Confidence            8888999999999999999999999999988765543 3345555555555443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.16  E-value=0.00019  Score=64.08  Aligned_cols=130  Identities=19%  Similarity=0.225  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhhHHHHHHH
Q psy16861         46 MLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFS  125 (382)
Q Consensus        46 ~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~  125 (382)
                      ++..+-..+++++-.+.+..+...|++|+..+....||++++++..+..+.. ......+....++..|+..+.+.+.+.
T Consensus         5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~   83 (242)
T PF00002_consen    5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFF   83 (242)
T ss_dssp             HHHHHHHH------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHH
Confidence            3444455556666666666566667778777888899999998876543222 111111111112335999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhc
Q psy16861        126 TASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLG  180 (382)
Q Consensus       126 ~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~  180 (382)
                      .++..-+.+.++|=|..+..+...    .+++........|.+.++.........
T Consensus        84 la~f~Wm~~~~~~l~~~~~~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~~~  134 (242)
T PF00002_consen   84 LASFFWMLVEAFYLYRLLVKVFNS----SRRRFWWYYLIGWGIPALIVVISVAVN  134 (242)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhheeEEEeecc----cchhhheeeeeeecCcceeeeeeeeec
Confidence            999999999999999999887332    234455567778998888876654433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.92  E-value=0.072  Score=49.76  Aligned_cols=113  Identities=18%  Similarity=0.243  Sum_probs=81.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHhHhHHHHHHH------hcC--cc
Q psy16861         37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRI-ITNYFVVSLAFADLLVALCVMPFNAIVS------LTD--EW  107 (382)
Q Consensus        37 ~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~-~~~~~i~nLai~Dll~~~~~~p~~~~~~------~~~--~~  107 (382)
                      .-+...+..++..++.++++++....+-.++++.-..+ ...+++.+|..+++--.... -..+...      ..+  ..
T Consensus        16 tS~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~-~~~~~~lyrsf~~~~dpC~i   94 (328)
T PF02117_consen   16 TSWNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYA-IIQIWSLYRSFFYSDDPCSI   94 (328)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCeee
Confidence            34445666777888888999999999988888776655 55677778888877654432 2222211      111  34


Q ss_pred             cccccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy16861        108 YFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYP  150 (382)
Q Consensus       108 ~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~  150 (382)
                      .+....|........++....++.-+++.+||.+|-..|-.++
T Consensus        95 ~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~  137 (328)
T PF02117_consen   95 LFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS  137 (328)
T ss_pred             EeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence            4677889999988889989999999999999999999886543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>KOG4193|consensus

Probab=96.67  E-value=0.15  Score=51.44  Aligned_cols=167  Identities=16%  Similarity=0.160  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCccccccc--chhHhhHHHHHHHHHH
Q psy16861         51 IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYF--MCDVWNSFDVYFSTAS  128 (382)
Q Consensus        51 i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~--~C~~~~~~~~~~~~~s  128 (382)
                      -+++++++=.+.+++.+.-|++++..+....||+++=+ ++-       ..++.+.|..+..  .|+..+++.+++..+.
T Consensus       329 G~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~-l~~-------l~fL~~~~~~~~~~~~C~~~a~llhff~Laa  400 (610)
T KOG4193|consen  329 GCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLF-LAE-------LLFLLGIDRTSTSVVLCIAAAILLHFFFLAA  400 (610)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-HHH-------HHHhcccccccCcccccHHHHHHHHHHHHHH
Confidence            33444444444444444445555544777788887722 111       1222233333222  6999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCcccceehhhHHHH
Q psy16861        129 ILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYAL  208 (382)
Q Consensus       129 ~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  208 (382)
                      .+-+.++++.=|..++.-+..   ...++........|...+++...........++     ....++.|....+..+.+
T Consensus       401 F~Wm~leg~hl~~~~v~vf~~---~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~-----~~~~~~~CWl~~~~~~~~  472 (610)
T KOG4193|consen  401 FFWMLLEGFHLYLLLVEVFRS---RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEG-----QYGTPRVCWLDTQNGFIW  472 (610)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHhhhhHHHHhheeEEeccCcc-----ccccCCceEEecCCceEE
Confidence            999999999988866654432   244444555468898888777655433322211     111223355443322211


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16861        209 ISSSISFWIPGFVMVTMLVVNTVLLMLSNV  238 (382)
Q Consensus       209 ~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~  238 (382)
                           .|+-|+.+++.+.+......+....
T Consensus       473 -----~F~GPv~~ii~~Ni~~Fv~t~~~l~  497 (610)
T KOG4193|consen  473 -----SFLGPVTLIILVNIVMFVVTLKKLL  497 (610)
T ss_pred             -----EEehHHHHHHHHHHHHHHHHHHHHh
Confidence                 1677777777777555544443333

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.59  E-value=0.055  Score=49.96  Aligned_cols=129  Identities=16%  Similarity=0.150  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHH---HHHHHHHHHHHHhHhHHHHHHHhcCcccccccchh--
Q psy16861         42 IIKGMLMCFIIITAILGNLLVIISVIKH-RKLRIITNYFV---VSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCD--  115 (382)
Q Consensus        42 ~~~~~~~~~i~i~gi~gN~~vl~vi~~~-~~l~~~~~~~i---~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~--  115 (382)
                      ......+-++++++++.|.+.++.+..+ +++.+-.++++   ....++|+-.+.+.-|.-+.....|. ..| ..|+  
T Consensus         9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy-~~G-~l~~~f   86 (303)
T PF10327_consen    9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGY-CVG-FLARYF   86 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEE-EEe-ehhhcC
Confidence            3455778889999999999999877654 44444333332   34677999998887887666655442 111 3333  


Q ss_pred             -----HhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHH
Q psy16861        116 -----VWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIIS  173 (382)
Q Consensus       116 -----~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~  173 (382)
                           ....+..+....-.-.++.--+-|+++|.+..+.+. .++..-........+..+...
T Consensus        87 ~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~~  148 (303)
T PF10327_consen   87 GISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFIF  148 (303)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHHH
Confidence                 344445555555666666677899999999876543 233333333444444443333

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.04  E-value=0.015  Score=53.85  Aligned_cols=102  Identities=11%  Similarity=0.209  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHhHhHHHHHHHhc----------CcccccccchhHh
Q psy16861         49 CFIIITAILGNLLVIISVIKHRKLRI-ITNYFVVSLAFADLLVALCVMPFNAIVSLT----------DEWYFGYFMCDVW  117 (382)
Q Consensus        49 ~~i~i~gi~gN~~vl~vi~~~~~l~~-~~~~~i~nLai~Dll~~~~~~p~~~~~~~~----------~~~~~~~~~C~~~  117 (382)
                      .+.++++++.|++.++.+.++.+... .--.++...|+.|++.+++-....-.....          +.+..+....+..
T Consensus         6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (307)
T PF10326_consen    6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL   85 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence            45678899999999998876533222 333456668888888876533322221111          1122233444555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy16861        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYP  150 (382)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~  150 (382)
                      ..+...+...+...++.--+.||.++++|.+-+
T Consensus        86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~  118 (307)
T PF10326_consen   86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLR  118 (307)
T ss_pred             hhhhhhhHHHHHHHHHhHhhhheeeeccchhhc
Confidence            555566667777777777889999999997643

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.81  E-value=0.017  Score=50.99  Aligned_cols=76  Identities=21%  Similarity=0.495  Sum_probs=53.3

Q ss_pred             HHHHhhhhcccccccccccccccCCCCcccccccCCceeeEeec----chhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Q psy16861        233 LMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVN----VYYALISSSISFWIPGFVMVTMYYRIYKEAVR  308 (382)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~  308 (382)
                      ..+..+|+.+.+.+.++....+........     ...|.....    ..+.....++.+++|+.++.++|.+|++.+++
T Consensus       103 ~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~C~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~  177 (257)
T PF00001_consen  103 IIIILIWIISFLISLPPLFFSWVYFVSDGS-----QSFCFIDFSSSSSQIYFIYFFIVFFILPLIIILICYIRILRKLRR  177 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCEEEEESTCC-----CEEEEESCSSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccceeeeeeecccccccccc
Confidence            446677888888888886654432222211     344544332    35777788888999999999999999999999


Q ss_pred             hHHHh
Q psy16861        309 QRIAL  313 (382)
Q Consensus       309 ~~~~~  313 (382)
                      +.++.
T Consensus       178 ~~~~~  182 (257)
T PF00001_consen  178 QRKRI  182 (257)
T ss_dssp             HHHCT
T ss_pred             ccccc
Confidence            88763

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=95.80  E-value=0.27  Score=45.77  Aligned_cols=94  Identities=22%  Similarity=0.291  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHhcCcc-----------cccccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16861         77 NYFVVSLAFADLLVALCVMPFNAIVSLTDEW-----------YFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVK  145 (382)
Q Consensus        77 ~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~-----------~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~  145 (382)
                      .-.+..|+++|++.++-.+.-...+......           .....+|........++..++.+-+.+-|+|-|+.+.+
T Consensus        68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~  147 (405)
T PF02101_consen   68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR  147 (405)
T ss_pred             chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence            3577899999999876544433333322211           11346899988877888888889999999999998865


Q ss_pred             cCCCCcccchhhhhhhhhHHhHHHHHHHHhh
Q psy16861        146 PLQYPIIMNQNTVLLMLSNVWILPGIISFTP  176 (382)
Q Consensus       146 p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~  176 (382)
                      .-..      .....--..+|.++.++..--
T Consensus       148 ~ag~------~~~~lYH~~aWgl~~lL~~~G  172 (405)
T PF02101_consen  148 SAGR------STIWLYHMMAWGLPALLCAEG  172 (405)
T ss_pred             cCCC------cchhHHHHHHHHHHHHHHHhc
Confidence            3211      112334566788887776444

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PHA03235 DNA packaging protein UL33; Provisional

Probab=95.64  E-value=0.017  Score=55.77  Aligned_cols=79  Identities=14%  Similarity=0.158  Sum_probs=45.4

Q ss_pred             HHHhhhhcccccccccccccccCCCCcccccccCCceeeEeec--------chhhhhhhhhhhhHhHHHHHHHHHHHHHH
Q psy16861        234 MLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVN--------VYYALISSSISFWIPGFVMVTMYYRIYKE  305 (382)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~P~~ii~~~y~~I~~~  305 (382)
                      .+..+|+.+++.+.|+....+................|.....        ..|.+...++.|++|+.+|+++|.+|++.
T Consensus       151 ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~  230 (409)
T PHA03235        151 ILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRT  230 (409)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566788888877776543321111110000111223432111        12444556667899999999999999999


Q ss_pred             HHHhHHH
Q psy16861        306 AVRQRIA  312 (382)
Q Consensus       306 ~~~~~~~  312 (382)
                      ++++.++
T Consensus       231 l~~~~~~  237 (409)
T PHA03235        231 LKRASYK  237 (409)
T ss_pred             HHhhhhh
Confidence            9887653

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=95.41  E-value=0.56  Score=39.83  Aligned_cols=97  Identities=14%  Similarity=0.206  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCc---chhHHHHHHHHHHHHHHHHhHhHHHHHH------Hh-cCcccccccchh
Q psy16861         46 MLMCFIIITAILGNLLVIISVIKHRKLR---IITNYFVVSLAFADLLVALCVMPFNAIV------SL-TDEWYFGYFMCD  115 (382)
Q Consensus        46 ~~~~~i~i~gi~gN~~vl~vi~~~~~l~---~~~~~~i~nLai~Dll~~~~~~p~~~~~------~~-~~~~~~~~~~C~  115 (382)
                      ..=.++...+.+.+.+.+..+.++|++.   +++-+|      +-+..-++.+|..+..      .+ ..+...+-..|.
T Consensus        45 ~~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvF------aT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCS  118 (226)
T PF06681_consen   45 TVEFIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVF------ATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCS  118 (226)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEE------eeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeeh
Confidence            3344556667777776666666655421   122111      1111112334433322      22 123445778899


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy16861        116 VWNSFDVYFSTASILHLCCISVDRYYAIVKPLQ  148 (382)
Q Consensus       116 ~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~  148 (382)
                      +..-+...+........+++|+|||..|+.-.+
T Consensus       119 flk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r  151 (226)
T PF06681_consen  119 FLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR  151 (226)
T ss_pred             HHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence            987776666666666667899999999987544

The function of this family is unknown.

>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]

Probab=93.87  E-value=5.6  Score=37.09  Aligned_cols=135  Identities=12%  Similarity=0.166  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHH--Hhc-C----------ccccc
Q psy16861         44 KGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIV--SLT-D----------EWYFG  110 (382)
Q Consensus        44 ~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~--~~~-~----------~~~~~  110 (382)
                      .-....+...+..+.+.+.++.+..+++.-+-...-+.-++++-++.++..+...+..  ... +          ....+
T Consensus        11 ~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~~   90 (328)
T PF01534_consen   11 ARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGLE   90 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCCC
Confidence            3344555666677778887777776665434334555556666666555433322220  000 0          11234


Q ss_pred             ccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhc
Q psy16861        111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLG  180 (382)
Q Consensus       111 ~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~  180 (382)
                      ...|.+...+.+++..++..=-+.+++.-|++-........  -.+.....-.++|.+.++..+..+..+
T Consensus        91 ~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~  158 (328)
T PF01534_consen   91 NSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALR  158 (328)
T ss_pred             CCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhc
Confidence            57899999999999998888888899999998876554332  335566678899999999987765543

In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane

>PHA02834 chemokine receptor-like protein; Provisional

Probab=93.86  E-value=0.046  Score=51.01  Aligned_cols=28  Identities=14%  Similarity=0.235  Sum_probs=24.0

Q ss_pred             hhhhhhhHhHHHHHHHHHHHHHHHHHhH
Q psy16861        283 SSSISFWIPGFVMVTMYYRIYKEAVRQR  310 (382)
Q Consensus       283 ~~~~~~~~P~~ii~~~y~~I~~~~~~~~  310 (382)
                      ..++.+++|+.+|+++|.+|++.++++.
T Consensus       193 ~~i~~f~iPl~ii~~~Y~~I~~~l~~~~  220 (323)
T PHA02834        193 INIFGIVIPLIILIYCYSKILYTLKNCK  220 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3466789999999999999999998764

>KOG4220|consensus

Probab=93.56  E-value=0.0026  Score=59.20  Aligned_cols=80  Identities=14%  Similarity=0.019  Sum_probs=51.9

Q ss_pred             eEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccceeee
Q psy16861        272 IFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVR  351 (382)
Q Consensus       272 ~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y~~~  351 (382)
                      +..++.+.+++.+|++.|.||.||++....=           +.|..        .+-....-.--=.||.+||++|.+.
T Consensus       413 rKAAkTLsAILlAFIiTWtPYNImVlv~tFC-----------~~CiP--------~tlW~~gYwLCYINSTiNP~CYALC  473 (503)
T KOG4220|consen  413 RKAAKTLSAILLAFILTWTPYNIMVLVNTFC-----------KNCIP--------ETLWTFGYWLCYINSTINPLCYALC  473 (503)
T ss_pred             HHHHHHHHHHHHHHHHHcccceeeeehHhhc-----------ccccc--------hhHhhhhhheeeecccccHHHHHHH
Confidence            4466678999999999999999998875321           00000        0000000111137999999999999


Q ss_pred             ccccccchhcccchhhHHH
Q psy16861        352 THSVTLNAKKKKKKKKKKK  370 (382)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~  370 (382)
                      |..+++.-++...++-+++
T Consensus       474 NatFrkTfk~lL~Cr~~~~  492 (503)
T KOG4220|consen  474 NATFRKTFKRLLLCRWKKR  492 (503)
T ss_pred             hHHHHHHHHHhheeeeccc
Confidence            9999998877655444333

>KOG4564|consensus

Probab=93.08  E-value=9.4  Score=37.28  Aligned_cols=130  Identities=17%  Similarity=0.195  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCc------------ccccccc
Q psy16861         46 MLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE------------WYFGYFM  113 (382)
Q Consensus        46 ~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~------------~~~~~~~  113 (382)
                      +++.+-..++++.=++.+.++..-|++|=..|+.=.||.++=++.++..+.........+.            ...+...
T Consensus       149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  228 (473)
T KOG4564|consen  149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG  228 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence            5666666666666666677777778888888999999999988887765555444443322            1246678


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhh
Q psy16861        114 CDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIML  179 (382)
Q Consensus       114 C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~  179 (382)
                      |+...++...+..++.+-+.+=++.=|-.++-.+..    .+++-..-+.+.|.+.+++..+..+.
T Consensus       229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~  290 (473)
T KOG4564|consen  229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIV  290 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhH
Confidence            999999988888888888888888777666654332    23455667788899888888776443

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.91  E-value=2.3  Score=39.14  Aligned_cols=132  Identities=10%  Similarity=0.115  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHH----HHHHHHHHHHhHhHHHHHHHh----cCcccccccch
Q psy16861         44 KGMLMCFIIITAILGNLLVIISVIKH-RKLRIITNYFVVS----LAFADLLVALCVMPFNAIVSL----TDEWYFGYFMC  114 (382)
Q Consensus        44 ~~~~~~~i~i~gi~gN~~vl~vi~~~-~~l~~~~~~~i~n----Lai~Dll~~~~~~p~~~~~~~----~~~~~~~~~~C  114 (382)
                      .....-++.+++++-|++..+.+.++ ++..+..-+.+.+    ..+.|+..+.+..|.......    .|-...-..-.
T Consensus         6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~   85 (302)
T PF10318_consen    6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT   85 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence            44566677889999999999877765 3322233333333    456788888776664443322    22222223446


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhH
Q psy16861        115 DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPI  177 (382)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~  177 (382)
                      .++.++..........++..+--+||.++....+...  .++.-....+..++++....+|..
T Consensus        86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~~~--~~~~r~~~~~~~y~~~~~~~~~~~  146 (302)
T PF10318_consen   86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSRSL--WKKIRIIFIIFNYIIAFLFFIPIY  146 (302)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccccc--chhhHHHHHHHHHHHHHHHHHHHh
Confidence            6777888888888888889999999999997644111  112222334444555555554543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>PF13853 7tm_4: Olfactory receptor

Probab=92.36  E-value=0.0061  Score=49.65  Aligned_cols=53  Identities=17%  Similarity=0.271  Sum_probs=39.9

Q ss_pred             eecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH------hHHHhhccCCCccccccc
Q psy16861        274 VVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVR------QRIALSRTSSNIVSPVIQ  326 (382)
Q Consensus       274 ~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~------~~~~~~~~~~~~~~~~~~  326 (382)
                      ..+..+...........|+.++++.|.+|..++.|      ++|+.+++.+|......+
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~avlki~S~~~r~KAfsTC~sHL~vv~lf  110 (144)
T PF13853_consen   52 SINEIVGFVVAIFILLGPLLLILFSYIRILRAVLKIPSAEGRSKAFSTCSSHLTVVSLF  110 (144)
T ss_pred             hhhheeeecccceeEEEEeeccccceeEEEehhhcccccccccccccccccCceEEEEe
Confidence            33444555566666789999999999999998877      567788999987665544

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.16  E-value=0.13  Score=41.90  Aligned_cols=58  Identities=16%  Similarity=0.297  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhH
Q psy16861        120 FDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPI  177 (382)
Q Consensus       120 ~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~  177 (382)
                      +..++-....+...+|+++|-..|.+|++.....+.+|.++-+.+..++.+..-+.|.
T Consensus        50 ~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy  107 (153)
T PF03383_consen   50 FGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPY  107 (153)
T ss_pred             eehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhc
Confidence            4556667778888999999999999999976678999999999888887777766664

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>KOG4219|consensus

Probab=91.85  E-value=0.19  Score=47.14  Aligned_cols=78  Identities=13%  Similarity=0.197  Sum_probs=50.4

Q ss_pred             HHHHhhhhcccccccccccccccCCCCcc----c---ccccCCceeeEee----cchhhhhhhhhhhhHhHHHHHHHHHH
Q psy16861        233 LMLSNVWILPGIISFTPIMLGWYTTPDHK----Q---YRKHHPNVCIFVV----NVYYALISSSISFWIPGFVMVTMYYR  301 (382)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~----~~~~~i~~~~~~~~~P~~ii~~~y~~  301 (382)
                      +.+..+|+++++.++|.....-.......    +   .-...+..|....    .+.|..+..++..++|++++...|..
T Consensus       152 ~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~  231 (423)
T KOG4219|consen  152 IIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTV  231 (423)
T ss_pred             ehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHH
Confidence            66788899999999887765443222221    1   1111122121111    12377888888999999999999999


Q ss_pred             HHHHHHHhH
Q psy16861        302 IYKEAVRQR  310 (382)
Q Consensus       302 I~~~~~~~~  310 (382)
                      |.+++|+.+
T Consensus       232 iav~LW~~~  240 (423)
T KOG4219|consen  232 IAVTLWGRR  240 (423)
T ss_pred             HHHHHHhcc
Confidence            988887654

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=90.62  E-value=9.8  Score=36.86  Aligned_cols=78  Identities=13%  Similarity=0.192  Sum_probs=45.5

Q ss_pred             HHHHhhhhcccccccccccccccCCCC---cccccccCCceeeEee----------cchhhhhhhhhhhhHhHHHHHHHH
Q psy16861        233 LMLSNVWILPGIISFTPIMLGWYTTPD---HKQYRKHHPNVCIFVV----------NVYYALISSSISFWIPGFVMVTMY  299 (382)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~P~~ii~~~y  299 (382)
                      +.+..+|+.+.+.++|+..........   ++.........|....          ...+.+...++.+++|+.+|++||
T Consensus       214 i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY  293 (417)
T PHA02638        214 ILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCY  293 (417)
T ss_pred             hhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778999999999887643221100   0000000112332111          112333445666889999999999


Q ss_pred             HHHHHHHHHhH
Q psy16861        300 YRIYKEAVRQR  310 (382)
Q Consensus       300 ~~I~~~~~~~~  310 (382)
                      .+|++++++..
T Consensus       294 ~~I~~~L~~~~  304 (417)
T PHA02638        294 IKIILKLKQLK  304 (417)
T ss_pred             HHHHHHHHHhh
Confidence            99999987644

>PF03125 Sre: C

Probab=89.13  E-value=21  Score=33.92  Aligned_cols=114  Identities=12%  Similarity=0.152  Sum_probs=69.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH---HHHHHhHhHHHHHHHhcC---------c
Q psy16861         39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFAD---LLVALCVMPFNAIVSLTD---------E  106 (382)
Q Consensus        39 ~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~D---ll~~~~~~p~~~~~~~~~---------~  106 (382)
                      ..+....++-.++.+++..-....+.++.+.|..|.-.+.+.......-   ++.=+...|........+         -
T Consensus        24 ~~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~  103 (365)
T PF03125_consen   24 WFYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQW  103 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhh
Confidence            5556666777777777777777777788888888766655555443333   222223344443322111         0


Q ss_pred             ccc------------cccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Q psy16861        107 WYF------------GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPII  152 (382)
Q Consensus       107 ~~~------------~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~  152 (382)
                      |..            +...--+.+++..-..+...+.+.++++||..|-...-.|.+.
T Consensus       104 ~t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~  161 (365)
T PF03125_consen  104 WTDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK  161 (365)
T ss_pred             hccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            111            1122334455555566677899999999999999998888753

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=88.23  E-value=0.52  Score=44.05  Aligned_cols=29  Identities=17%  Similarity=0.178  Sum_probs=24.1

Q ss_pred             hhhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q psy16861        283 SSSISFWIPGFVMVTMYYRIYKEAVRQRI  311 (382)
Q Consensus       283 ~~~~~~~~P~~ii~~~y~~I~~~~~~~~~  311 (382)
                      ...+.+++|..+++++|.+|++.++++.+
T Consensus       207 ~~~~~~~lP~~ii~~~y~~i~~~l~~~~~  235 (335)
T PHA03087        207 INIIGMLIPLTILLYCYSKILITLKGINK  235 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44566899999999999999998887653

>PHA03234 DNA packaging protein UL33; Provisional

Probab=87.03  E-value=0.86  Score=42.82  Aligned_cols=25  Identities=16%  Similarity=0.078  Sum_probs=21.0

Q ss_pred             hhhhhHhHHHHHHHHHHHHHHHHHh
Q psy16861        285 SISFWIPGFVMVTMYYRIYKEAVRQ  309 (382)
Q Consensus       285 ~~~~~~P~~ii~~~y~~I~~~~~~~  309 (382)
                      ++.+++|+.+|.++|.+|.+.++++
T Consensus       203 ~~~f~iPl~im~~cY~~I~~~L~~~  227 (338)
T PHA03234        203 FIWGIFPTMIFSFFYVIFCKALHAL  227 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3346899999999999999888764

>PF15086 UPF0542: Uncharacterised protein family UPF0542

Probab=86.64  E-value=3  Score=28.85  Aligned_cols=37  Identities=11%  Similarity=0.335  Sum_probs=24.8

Q ss_pred             ecchhhhhhhhhhhhHhHHHH-HHHHHHHHHHHHHhHH
Q psy16861        275 VNVYYALISSSISFWIPGFVM-VTMYYRIYKEAVRQRI  311 (382)
Q Consensus       275 ~~~~~~i~~~~~~~~~P~~ii-~~~y~~I~~~~~~~~~  311 (382)
                      +...|..+..+++++.|++++ .++-++..+.+.++.+
T Consensus        16 AkdP~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~er   53 (74)
T PF15086_consen   16 AKDPYEFLTTVLLILTPLFIISAVLSWKLAKAIEKEER   53 (74)
T ss_pred             HcChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567778888899999887 4555666555544443

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=84.20  E-value=7.4  Score=35.74  Aligned_cols=107  Identities=16%  Similarity=0.161  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHh--HhHHHHHHH-------hcCcccccccc-hhHhh
Q psy16861         50 FIIITAILGNLLVIISVIKHRKLRI-ITNYFVVSLAFADLLVALC--VMPFNAIVS-------LTDEWYFGYFM-CDVWN  118 (382)
Q Consensus        50 ~i~i~gi~gN~~vl~vi~~~~~l~~-~~~~~i~nLai~Dll~~~~--~~p~~~~~~-------~~~~~~~~~~~-C~~~~  118 (382)
                      +.++++.+.|-+.++.+..+|+.+- .--+++..-|+-|++.++.  ..|..+..+       ..++|..+... =....
T Consensus        13 ~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~l   92 (310)
T PF10319_consen   13 IFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHLL   92 (310)
T ss_pred             HHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHHH
Confidence            4578889999999998888877543 4446778899999998775  233322221       11222222111 11111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchh
Q psy16861        119 SFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN  156 (382)
Q Consensus       119 ~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~  156 (382)
                      ...-.+...|-..|..=-+.||+++++|....+...+.
T Consensus        93 s~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~  130 (310)
T PF10319_consen   93 SIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPY  130 (310)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhH
Confidence            12222334455556666779999999985544443333

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	382
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-35
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-09
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		5e-35
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		2e-08
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		9e-35
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		1e-08
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		2e-34
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		6e-09
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		3e-34
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		2e-08
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		3e-34
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		2e-08
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		3e-34
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		6e-09
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		3e-34
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		7e-09
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		4e-34
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		5e-34
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		9e-11
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		6e-34
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		3e-10
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		8e-26
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		2e-18
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		2e-17
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		2e-15
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		7e-15
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		5e-14
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		7e-14
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		1e-13
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		1e-13
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		2e-13
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		3e-12
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		3e-12
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		6e-12
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		3e-11
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		2e-08
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		2e-08
3odu_A	502	The 2.5 A Structure Of The Cxcr4 Chemokine Receptor		9e-08
3oe0_A	499	Crystal Structure Of The Cxcr4 Chemokine Receptor I		9e-08
3oe6_A	508	Crystal Structure Of The Cxcr4 Chemokine Receptor I		9e-08
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		6e-07
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		6e-07
2x72_A	349	Crystal Structure Of The Constitutively Active E113		6e-07
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		7e-07
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		7e-07
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		7e-07

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   LT
Sbjct: 186 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 245
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 246 KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 305
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIP 218
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P
Sbjct: 306 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 360

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 195 PNVCIFVVNVYYALISSSISFWIPGFXXXXXXXXXXXXXXXXXXWILPGIISFTPIMLGW 254
             +C+  V+ Y+A+ S         F                  WI+ G+ SF PI + W
Sbjct: 271 ETLCVIAVDRYFAITSP--------FKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 322
Query: 255 YTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIAL 313
           Y     +    +    C  F  N  YA+ SS +SF++P  +MV +Y R+++EA RQ   +
Sbjct: 323 YRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKI 382
Query: 314 SRTSSNI----VSPVIQSTSEGSAV 334
            ++        +S V Q    G  +
Sbjct: 383 DKSEGRFHVQNLSQVEQDGRTGHGL 407

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   LT
Sbjct: 9   GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 68
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 69  KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 128
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIP 218
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P
Sbjct: 129 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 183

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 195 PNVCIFVVNVYYALISSSISFWIPGFXXXXXXXXXXXXXXXXXXWILPGIISFTPIMLGW 254
             +C+  V+ Y+A+ S         F                  WI+ G+ SF PI + W
Sbjct: 94  ETLCVIAVDRYFAITSP--------FKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 145
Query: 255 YTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQ 309
           Y     +    +    C  F  N  YA+ SS +SF++P  +MV +Y R+++EA RQ
Sbjct: 146 YRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQ 201

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score =  144 bits (363), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 13  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILM 72
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 73  KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 132
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIP 218
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P
Sbjct: 133 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 187

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 195 PNVCIFVVNVYYALISSSISFWIPGFXXXXXXXXXXXXXXXXXXWILPGIISFTPIMLGW 254
             +C+  V+ Y+A+ S         F                  WI+ G+ SF PI + W
Sbjct: 98  ETLCVIAVDRYFAITSP--------FKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 149
Query: 255 YTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQ 309
           Y     +    +    C  F  N  YA+ SS +SF++P  +MV +Y R+++EA RQ
Sbjct: 150 YRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQ 205

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 108/176 (61%), Gaps = 3/176 (1%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 14  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 73
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 74  KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 133
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPN--VCIFVVNVYYALISSSISFWIP 218
           VWI+ G+ SF PI + WY    H++    + N   C F  N  YA+ SS +SF++P
Sbjct: 134 VWIVSGLTSFLPIQMHWYRAT-HQEAINCYANETCCDFFTNQAYAIASSIVSFYVP 188

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 195 PNVCIFVVNVYYALISSSISFWIPGFXXXXXXXXXXXXXXXXXXWILPGIISFTPIMLGW 254
             +C+  V+ Y+A+ S         F                  WI+ G+ SF PI + W
Sbjct: 99  ETLCVIAVDRYFAITSP--------FKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 150
Query: 255 YTTPDHKQYRKHHPN--VCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIA 312
           Y    H++    + N   C F  N  YA+ SS +SF++P  +MV +Y R+++EA RQ   
Sbjct: 151 YRAT-HQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQK 209
Query: 313 LSRTSSNI----VSPVIQSTSEGSAV 334
           + ++        +S V Q    G  +
Sbjct: 210 IDKSEGRFHVQNLSQVEQDGRTGHGL 235

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 44  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 103
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 104 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 163
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIP 218
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P
Sbjct: 164 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 218

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 197 VCIFVVNVYYALISSSISFWIPGFXXXXXXXXXXXXXXXXXXWILPGIISFTPIMLGWYT 256
           +C+  V+ Y+A+ S         F                  WI+ G+ SF PI + WY 
Sbjct: 131 LCVIAVDRYFAITSP--------FKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYR 182
Query: 257 TPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQ 309
               +    +    C  F  N  YA+ SS +SF++P  +MV +Y R+++EA RQ
Sbjct: 183 ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQ 236

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 45  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 104
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 105 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 164
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIP 218
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P
Sbjct: 165 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 219

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 197 VCIFVVNVYYALISSSISFWIPGFXXXXXXXXXXXXXXXXXXWILPGIISFTPIMLGWYT 256
           +C+  V+ Y+A+ S         F                  WI+ G+ SF PI + WY 
Sbjct: 132 LCVIAVDRYFAITSP--------FKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYR 183
Query: 257 TPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQ 309
               +    +    C  F  N  YA+ SS +SF++P  +MV +Y R+++EA RQ
Sbjct: 184 ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQ 237

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 108/176 (61%), Gaps = 3/176 (1%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 37  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 96
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 97  KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 156
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPN--VCIFVVNVYYALISSSISFWIP 218
           VWI+ G+ SF PI + WY    H++    + N   C F  N  YA+ SS +SF++P
Sbjct: 157 VWIVSGLTSFLPIQMHWYRAT-HQEAINCYANETCCDFFTNQAYAIASSIVSFYVP 211

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 195 PNVCIFVVNVYYALISSSISFWIPGFXXXXXXXXXXXXXXXXXXWILPGIISFTPIMLGW 254
             +C+  V+ Y+A+ S         F                  WI+ G+ SF PI + W
Sbjct: 122 ETLCVIAVDRYFAITSP--------FKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 173
Query: 255 YTTPDHKQYRKHHPN--VCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIA 312
           Y    H++    + N   C F  N  YA+ SS +SF++P  +MV +Y R+++EA RQ   
Sbjct: 174 YRAT-HQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQK 232
Query: 313 LSRTSSNI----VSPVIQSTSEGSAV 334
           + ++        +S V Q    G  +
Sbjct: 233 IDKSEGRFHVQNLSQVEQDGRTGHGL 258

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 38  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 97
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 98  KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 157
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIP 218
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P
Sbjct: 158 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 212

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 195 PNVCIFVVNVYYALISSSISFWIPGFXXXXXXXXXXXXXXXXXXWILPGIISFTPIMLGW 254
             +C+  V+ Y+A+ S         F                  WI+ G+ SF PI + W
Sbjct: 123 ETLCVIAVDRYFAITSP--------FKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 174
Query: 255 YTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIAL 313
           Y     +    +    C  F  N  YA+ SS +SF++P  +MV +Y R+++EA RQ   +
Sbjct: 175 YRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKI 234
Query: 314 SRTSSNI----VSPVIQSTSEGSAV 334
            ++        +S V Q    G  +
Sbjct: 235 DKSEGRFHVQNLSQVEQDGRTGHGL 259

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 45  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 104
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 105 KMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 164
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIP 218
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P
Sbjct: 165 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 219

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Query: 46  MLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD 105
           +LM  +++  + GN+LVI ++   ++L+ +TN F+ SLA ADL+V L V+PF A + +  
Sbjct: 16  LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75
Query: 106 EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNV 165
            W +G F+C++W S DV   TASI  LC I++DRY AI  P +Y  +M +    +++  V
Sbjct: 76  TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTV 135
Query: 166 WILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFWIP 218
           W +  ++SF PIM+ W+   D +  + +  P  C FV N  YA+ SS ISF+IP
Sbjct: 136 WAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIP 189

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 239 WILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFWIPGFVMVT 297
           W +  ++SF PIM+ W+   D +  + +  P  C FV N  YA+ SS ISF+IP  +M+ 
Sbjct: 136 WAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIF 195
Query: 298 MYYRIYKEAVRQRIALSRTSSNIVSPVI 325
           +  R+Y+EA  Q   + R S    S V+
Sbjct: 196 VALRVYREAKEQIRKIDRASKRKTSRVM 223

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Query: 46  MLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD 105
           +LM  +++  + GN+LVI ++   ++L+ +TN F+ SLA ADL+V L V+PF A + +  
Sbjct: 16  LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75
Query: 106 EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNV 165
            W +G F+C++W S DV   TASI  LC I++DRY AI  P +Y  +M +    +++  V
Sbjct: 76  TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTV 135
Query: 166 WILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFWIP 218
           W +  ++SF PIM+ W+   D +  + +  P  C FV N  YA+ SS ISF+IP
Sbjct: 136 WAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIP 189

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 239 WILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFWIPGFVMVT 297
           W +  ++SF PIM+ W+   D +  + +  P  C FV N  YA+ SS ISF+IP  +M+ 
Sbjct: 136 WAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIF 195
Query: 298 MYYRIYKEAVRQRIALSRTSSN 319
           +  R+Y+EA  Q   + R S  
Sbjct: 196 VALRVYREAKEQIRKIDRASKR 217

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score =  114 bits (285), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 14/174 (8%)
Query: 49  CFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE-W 107
           C +I+  + GN LV ++V+K R L+  TNY VVSLA ADLLVA  VMP+   + +T   W
Sbjct: 46  CALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVW 105
Query: 108 YFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNT---VLLMLSN 164
            F    CDV+ + DV   TASI +LC IS+DRY A+V P+ Y     Q++   V LM++ 
Sbjct: 106 NFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITA 165
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIP 218
           VW+L   +S  P++ G+ TT D        P VC  + N  + + SS +SF++P
Sbjct: 166 VWVLAFAVS-CPLLFGFNTTGD--------PTVC-SISNPDFVIYSSVVSFYLP 209

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 53  ITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYF 112
           +  I+GN+LV++S+  +R L+ + NYF+ SLA ADL++ +  M    + ++   W  G  
Sbjct: 35  LVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPV 94
Query: 113 MCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGII 172
           +CD+W + D   S AS+++L  IS DRY+ + KPL YP+        +M++  W+L  I+
Sbjct: 95  VCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFIL 154
Query: 173 SFTPIMLGWY------TTPDHKQYRKHHPNVCI 199
            + P +L W       T  D + Y +   N  +
Sbjct: 155 -WAPAILFWQFIVGVRTVEDGECYIQFFSNAAV 186

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 47  LMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE 106
           L  F+ +  I+GN+LVI++   +++L+ + NYF++SLA ADL++ +  M       + + 
Sbjct: 18  LTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNR 77
Query: 107 WYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVW 166
           W  G   CD+W S D   S AS+++L  IS DRY++I +PL Y          +M+   W
Sbjct: 78  WALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAW 137
Query: 167 ILPGIISFTPIMLGW 181
           ++  ++ + P +L W
Sbjct: 138 VISFVL-WAPAILFW 151

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 5/182 (2%)
Query: 37  HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
            + P ++    +C + +     NLLV+ +V   RKL  + N ++VSL+ ADL+V   VMP
Sbjct: 7   QLMPLVVVLSTICLVTVGL---NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP 63
Query: 97  FNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
            N +  L  +W  G  +C  W S D   STASI  +  + +DRY ++ +PL+Y     + 
Sbjct: 64  MNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKT 123
Query: 157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
                +   W L   +   PI LGW         R+       F    ++ ++++ I+F+
Sbjct: 124 RASATILGAWFL-SFLWVIPI-LGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFY 181
Query: 217 IP 218
           +P
Sbjct: 182 LP 183

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I + AILGN+LV  +V  +  L+ +TNYFVVSLA AD+LV +  +PF   ++++  +   
Sbjct: 16  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFA--ITISTGFCAA 73
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
              C     F +  + +SI  L  I++DRY AI  PL+Y  ++       +++  W+L  
Sbjct: 74  CHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSF 133
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
            I  TP MLGW      K+ + H
Sbjct: 134 AIGLTP-MLGWNNCGQPKEGKNH 155

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I + AILGN+LV  +V  +  L+ +TNYFVVSLA AD+ V +  +PF   ++++  +   
Sbjct: 16  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA--ITISTGFCAA 73
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
              C     F +  + +SI  L  I++DRY AI  PL+Y  ++       +++  W+L  
Sbjct: 74  CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 133
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
            I  TP MLGW      K+ ++H
Sbjct: 134 AIGLTP-MLGWNNCGQPKEGKQH 155

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I + AILGN+LV  +V  +  L+ +TNYFVVS A AD+LV +  +PF   ++++  +   
Sbjct: 16  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFA--IAISTGFCAA 73
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
              C     F +  + +SI  L  I++DRY AI  PL+Y  ++       +++  W+L  
Sbjct: 74  CHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 133
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
            I  TP MLGW      K+ + H
Sbjct: 134 AIGLTP-MLGWNNCGQPKEGKAH 155

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 20/142 (14%)
Query: 66  VIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT----DEWYFGYFMCDVWNSFD 121
           ++ H+++R +TNYF+V+LAFA+  +A     FN +V+ T    +EWY+G F C   N F 
Sbjct: 57  ILAHKRMRTVTNYFLVNLAFAEASMA----AFNTVVNFTYAVHNEWYYGLFYCKFHNFFP 112
Query: 122 VYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
           +    ASI  +  ++ DRY AI+ PLQ  +      V++ +  +W+L  +++F     G+
Sbjct: 113 IAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICV--IWVLALLLAFPQ---GY 167
Query: 182 YTTPDHKQYR-------KHHPN 196
           Y+T +    R         HPN
Sbjct: 168 YSTTETMPSRVVCMIEWPEHPN 189

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I + AILGN+LV  +V  +  L+ +TNYFVVSLA AD+ V +  +PF   ++++  +   
Sbjct: 31  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF--AITISTGFCAA 88
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
              C     F +  + +SI  L  I++DRY AI  PL+Y  ++       +++  W+L  
Sbjct: 89  CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 148
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
            I  TP MLGW      K+ + H
Sbjct: 149 AIGLTP-MLGWNNCGQPKEGKNH 170

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I + AILGN+LV  +V  +  L+ +TNYFVVSLA AD+ V +  +PF   ++++  +   
Sbjct: 41  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF--AITISTGFCAA 98
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
              C     F +  + +SI  L  I++DRY AI  PL+Y  ++       +++  W+L  
Sbjct: 99  CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 158
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
            I  TP MLGW      K+ + H
Sbjct: 159 AIGLTP-MLGWNNCGQPKEGKNH 180

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           + +  ++GN LV+  +I++ K++  TN ++ +LA AD LV    MPF + V L + W FG
Sbjct: 32  VFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVT-TTMPFQSTVYLMNSWPFG 90
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
             +C +  S D Y    SI  L  +SVDRY A+  P++           ++   +W+L  
Sbjct: 91  DVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSS 150
Query: 171 IISFTPIMLG 180
            +  + I+LG
Sbjct: 151 SVGISAIVLG 160

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 55  AILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMC 114
            +LGN+LV+  ++++ KL+  TN ++ +LA AD L A   +PF +   L + W FG  +C
Sbjct: 28  GLLGNVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLMETWPFGELLC 86
Query: 115 DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISF 174
               S D Y    SI  L  +SVDRY A+  P++           L+   +W+L   +  
Sbjct: 87  KAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVG- 145
Query: 175 TPIMLGWYTTP 185
            PIM+   T P
Sbjct: 146 VPIMVMAVTQP 156

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           + +  + GN LV+  ++++ K++  TN ++ +LA AD L A   +PF ++  L   W FG
Sbjct: 27  VCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMGTWPFG 85
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQ-YPIIMNQNTVLLMLSNVWILP 169
             +C +  S D Y    SI  LC +SVDRY A+  P++       +N  ++ + N WIL 
Sbjct: 86  NILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCN-WILS 144
Query: 170 GIISFTPIMLGWYTTPDHKQ 189
             I   P+M  +  T  ++Q
Sbjct: 145 SAIGL-PVM--FMATTKYRQ 161

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           + +  +LGN LV+  +++H K++  TN ++ +LA AD LV L  +PF     L   W FG
Sbjct: 135 VCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFG 193
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
             +C    + D Y    S   L  +SVDRY AI  P++   +   +    +   +W L  
Sbjct: 194 NALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALAS 253
Query: 171 IISFTPIMLGWYTTPDHK 188
           ++     ++G     D +
Sbjct: 254 VVGVPVAIMGSAQVEDEE 271

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 68  KHRKLRIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFST 126
           K + L+   N F+++LAF+D   +L    P   I     +W FG+  C V+      F  
Sbjct: 60  KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 119
Query: 127 ASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
            SI+ +  IS+DRY  I +P+     M+     +M+  VW+   + +  PI  GW
Sbjct: 120 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPI-FGW 173

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 68  KHRKLRIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFST 126
           K + L+   N F+++LAF+D   +L    P   I     +W FG+  C V+      F  
Sbjct: 61  KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 120
Query: 127 ASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
            SI+ +  IS+DRY  I +P+     M+     +M+  VW+   + +  PI  GW
Sbjct: 121 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPI-FGW 174

>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I +T I+GN LVI+ +   +KLR +T+ + + L+ ADLL  +  +PF A+ ++ + WYFG
Sbjct: 58  IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV 144
            F+C   +        +S+  L  IS+DRY AIV
Sbjct: 116 NFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV 149

>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I +T I+GN LVI+ +   +KLR +T+ + + L+ ADLL  +  +PF A+ ++ + WYFG
Sbjct: 58  IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV 144
            F+C   +        +S+  L  IS+DRY AIV
Sbjct: 116 NFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV 149

>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I +T I+GN LVI+ +   +KLR +T+ + + L+ ADLL  +  +PF A+ ++ + WYFG
Sbjct: 58  IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV 144
            F+C   +        +S+  L  IS+DRY AIV
Sbjct: 116 NFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV 149

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 40  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 39  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 98
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 99  LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGV 157
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 158 AFTWVM-ALACAAPPLVGW 175

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 40  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 100 LHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 40  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 40  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 39  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 98
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 99  LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGV 157
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 158 AFTWVM-ALACAAPPLVGW 175

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	382
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	7e-87
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	3e-23
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	2e-85
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	6e-22
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	3e-80
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	4e-20
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	5e-80
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	2e-20
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	6e-77
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	2e-18
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	1e-75
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	6e-17
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	3e-71
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	5e-17
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	8e-70
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	2e-14
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	1e-49
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-36
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	1e-34
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	8e-33
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	5e-32
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	8e-30
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	2e-29
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	5e-09

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score =  270 bits (692), Expect = 7e-87
 Identities = 75/220 (34%), Positives = 119/220 (54%), Gaps = 1/220 (0%)

Query: 7   NSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISV 66
           +++    N +      + +     + T        +  G++M  I++  + GN+LVI ++
Sbjct: 6   DAMGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAI 65

Query: 67  IKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFST 126
            K  +L+ +TNYF+ SLA ADL++ L V+PF A   L   W FG F C+ W S DV   T
Sbjct: 66  AKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVT 125

Query: 127 ASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD 186
           ASI  LC I+VDRY+AI  P +Y  ++ +N   +++  VWI+ G+ SF PI + WY    
Sbjct: 126 ASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATH 185

Query: 187 HKQYRKHH-PNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
            +    +     C F  N  YA+ SS +SF++P  +MV +
Sbjct: 186 QEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFV 225

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score =  100 bits (249), Expect = 3e-23
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFW 289
             +++  VWI+ G+ SF PI + WY     +    +     C F  N  YA+ SS +SF+
Sbjct: 157 ARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFY 216

Query: 290 IPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRN 349
           +P  +MV +Y R+++EA RQ         +    +                  +   + N
Sbjct: 217 VPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLN 276

Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
                +     +       K + +K   +   +
Sbjct: 277 AAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 309

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score =  267 bits (684), Expect = 2e-85
 Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 2   NNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLL 61
              +  S  Y    N      +       ++     ++  +  G++M  I++  + GN+L
Sbjct: 144 AVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWV-VGMGIVMSLIVLAIVFGNVL 202

Query: 62  VIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFD 121
           VI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   LT  W FG F C+ W S D
Sbjct: 203 VITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSID 262

Query: 122 VYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
           V   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  VWI+ G+ SF PI + W
Sbjct: 263 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 322

Query: 182 YTTPDHKQYRKH-HPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
           Y     +    +     C F  N  YA+ SS +SF++P  +MV +
Sbjct: 323 YRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFV 367

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 96.1 bits (239), Expect = 6e-22
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 230 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH-HPNVCIFVVNVYYALISSSISF 288
              +++  VWI+ G+ SF PI + WY     +    +     C F  N  YA+ SS +SF
Sbjct: 298 KARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSF 357

Query: 289 WIPGFVMVTMYYRIYKEAVRQ 309
           ++P  +MV +Y R+++EA RQ
Sbjct: 358 YVPLVIMVFVYSRVFQEAKRQ 378

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score =  247 bits (633), Expect = 3e-80
 Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 1/185 (0%)

Query: 42  IIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIV 101
               +LM  +++  + GN+LVI ++   ++L+ +TN F+ SLA ADL+V L V+PF A +
Sbjct: 12  AGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATL 71

Query: 102 SLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLM 161
            +   W +G F+C++W S DV   TASI  LC I++DRY AI  P +Y  +M +    ++
Sbjct: 72  VVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVI 131

Query: 162 LSNVWILPGIISFTPIMLGWYTTPDHKQYR-KHHPNVCIFVVNVYYALISSSISFWIPGF 220
           +  VW +  ++SF PIM+ W+   D +  +    P  C FV N  YA+ SS ISF+IP  
Sbjct: 132 ICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLL 191

Query: 221 VMVTM 225
           +M+ +
Sbjct: 192 IMIFV 196

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 89.0 bits (221), Expect = 4e-20
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 228 VNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYR-KHHPNVCIFVVNVYYALISSSI 286
                +++  VW +  ++SF PIM+ W+   D +  +    P  C FV N  YA+ SS I
Sbjct: 125 RARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSII 184

Query: 287 SFWIPGFVMVTMYYRIYKEAVRQ 309
           SF+IP  +M+ +  R+Y+EA  Q
Sbjct: 185 SFYIPLLIMIFVALRVYREAKEQ 207

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score =  252 bits (644), Expect = 5e-80
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 2/205 (0%)

Query: 21  NFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFV 80
           + +++S      T     F  +   ++   + +  I+GN+LV++S+  +R L+ + NYF+
Sbjct: 3   DSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFL 62

Query: 81  VSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRY 140
            SLA ADL++ +  M    + ++   W  G  +CD+W + D   S AS+++L  IS DRY
Sbjct: 63  FSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRY 122

Query: 141 YAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF 200
           + + KPL YP+        +M++  W+L  I+   P +L W      +           F
Sbjct: 123 FCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWA-PAILFWQFIVGVRTVEDGEC-YIQF 180

Query: 201 VVNVYYALISSSISFWIPGFVMVTM 225
             N      ++  +F++P  +M  +
Sbjct: 181 FSNAAVTFGTAIAAFYLPVIIMTVL 205

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 91.3 bits (226), Expect = 2e-20
 Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWI 290
             +M++  W+L  I+   P +L W      +           F  N      ++  +F++
Sbjct: 140 AGMMIAAAWVLSFILWA-PAILFWQFIVGVRTVEDGEC-YIQFFSNAAVTFGTAIAAFYL 197

Query: 291 PGFVMVTMYYRIYKEAVRQRIALSRTS-SNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRN 349
           P  +M  +Y+ I + +  +            +   I   +EG   + +      +P    
Sbjct: 198 PVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNA 257

Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKK 379
            ++       +       K + +K   +  
Sbjct: 258 AKSELDKAIGRNTNGVITKDEAEKLFNQDV 287

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score =  243 bits (622), Expect = 6e-77
 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 2/184 (1%)

Query: 42  IIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIV 101
           +   +++  I +  +  NLLV+ +V   RKL  + N ++VSL+ ADL+V   VMP N + 
Sbjct: 9   MPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILY 68

Query: 102 SLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLM 161
            L  +W  G  +C  W S D   STASI  +  + +DRY ++ +PL+Y     +      
Sbjct: 69  LLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASAT 128

Query: 162 LSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFV 221
           +   W L  +    PI+ GW         R+       F    ++ ++++ I+F++P  +
Sbjct: 129 ILGAWFLSFLWVI-PIL-GWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLL 186

Query: 222 MVTM 225
           M+  
Sbjct: 187 MLWF 190

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 85.5 bits (211), Expect = 2e-18
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 3/153 (1%)

Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWI 290
               +   W L  +    PI+ GW         R+       F    ++ ++++ I+F++
Sbjct: 125 ASATILGAWFLSFLWVI-PIL-GWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYL 182

Query: 291 PGFVMVTMYYRIYKEAVRQRIALSRTS-SNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRN 349
           P  +M+  Y +IYK   +             +   I   +EG   + +      +P    
Sbjct: 183 PTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNA 242

Query: 350 VRTHSVTLNAKKKKKKKKKKKKKKKKKKKKKKS 382
            ++       +       K + +K   +    +
Sbjct: 243 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAA 275

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score =  241 bits (616), Expect = 1e-75
 Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 14/212 (6%)

Query: 18  TSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITN 77
             ++  N +    NST      P     +  C +I+  + GN LV ++V+K R L+  TN
Sbjct: 15  QLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTN 74

Query: 78  YFVVSLAFADLLVALCVMPFNAIVSLTDE-WYFGYFMCDVWNSFDVYFSTASILHLCCIS 136
           Y VVSLA ADLLVA  VMP+   + +T   W F    CDV+ + DV   TASI +LC IS
Sbjct: 75  YLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAIS 134

Query: 137 VDRYYAIVKPLQYPIIMNQNT---VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH 193
           +DRY A+V P+ Y     Q++   V LM++ VW+L   +S  P++ G+ TT D       
Sbjct: 135 IDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSC-PLLFGFNTTGD------- 186

Query: 194 HPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
            P VC    N  + + SS +SF++P  V V +
Sbjct: 187 -PTVCSI-SNPDFVIYSSVVSFYLPFGVTVLV 216

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 81.3 bits (200), Expect = 6e-17
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 13/127 (10%)

Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWI 290
           V LM++ VW+L   +S  P++ G+ TT D        P VC    N  + + SS +SF++
Sbjct: 159 VALMITAVWVLAFAVSC-PLLFGFNTTGD--------PTVCSIS-NPDFVIYSSVVSFYL 208

Query: 291 PGFVMVTMYYRIYKEAVRQ---RIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVT 347
           P  V V +Y RIY    ++    I         +   I   +EG   + +      +P  
Sbjct: 209 PFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSL 268

Query: 348 RNVRTHS 354
              ++  
Sbjct: 269 NAAKSEL 275

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score =  230 bits (586), Expect = 3e-71
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 12/214 (5%)

Query: 21  NFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFV 80
           ++ +             I    +   +   I + AILGN+LV  +V  +  L+ +TNYFV
Sbjct: 1   DYKDDDDAMGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFV 60

Query: 81  VSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRY 140
           VSLA AD+ V +  +PF   +S    +      C     F +  + +SI  L  I++DRY
Sbjct: 61  VSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRY 118

Query: 141 YAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH------H 194
            AI  PL+Y  ++       +++  W+L   I  TP++ GW      K+ + H       
Sbjct: 119 IAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGEG 177

Query: 195 PNVCIF--VVNVYYALISSSI-SFWIPGFVMVTM 225
              C+F  VV + Y +  +      +P  +M+ +
Sbjct: 178 QVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 211

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 81.3 bits (200), Expect = 5e-17
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 11/158 (6%)

Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH------HPNVCIF--VVNVYYALI 282
              +++  W+L   I  TP++ GW      K+ + H          C+F  VV + Y + 
Sbjct: 136 AKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVY 194

Query: 283 SSSI-SFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNI-VSPVIQSTSEGSAVVTVSDT 340
            +      +P  +M+ +Y RI+  A RQ         +  +   I   +EG   + +   
Sbjct: 195 FNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHL 254

Query: 341 PQSTPVTRNVRTHSVTLNAKKKKKKKKKKKKKKKKKKK 378
              +P     ++       +       K + +K   + 
Sbjct: 255 LTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 292

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score =  225 bits (574), Expect = 8e-70
 Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 20/227 (8%)

Query: 8   SLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVI 67
           +L+Y + + +      +    P   +         +   +   I + AILGN+LV  +V 
Sbjct: 6   ALSYIFCLVFADYKDDDDGAPPIMGSS--------VYITVELAIAVLAILGNVLVCWAVW 57

Query: 68  KHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTA 127
            +  L+ +TNYFVVSLA AD+ V +  +PF   +S    +      C     F +  + +
Sbjct: 58  LNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIACFVLVLTQS 115

Query: 128 SILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDH 187
           SI  L  I++DRY AI  PL+Y  ++       +++  W+L   I  TP++ GW      
Sbjct: 116 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML-GWNNCGQP 174

Query: 188 KQYRKH------HPNVCIF---VVNVYYALISSSISFWIPGFVMVTM 225
           K+ + H          C+F   V   Y    +      +P  +M+ +
Sbjct: 175 KEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 221

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 73.6 bits (180), Expect = 2e-14
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 231 VLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH------HPNVCIF---VVNVYYAL 281
              +++  W+L   I  TP++ GW      K+ + H          C+F   V   Y   
Sbjct: 146 AKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVY 204

Query: 282 ISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRT 316
            +      +P  +M+ +Y RI+  A RQ   L   
Sbjct: 205 FNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDN 239

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score =  174 bits (441), Expect = 1e-49
 Identities = 55/382 (14%), Positives = 132/382 (34%), Gaps = 29/382 (7%)

Query: 2   NNTIYNSLNYTYNI-NYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNL 60
            +++ + +NY   + +Y  T   N S    NS          +  ++   I    IL N+
Sbjct: 31  RSSVSDYVNYDIIVRHYNYTGKLNISADKENSIK--------LTSVVFILICCFIILENI 82

Query: 61  LVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120
            V++++ K +K      YF+ +LA +DLL  +       ++S    +        +    
Sbjct: 83  FVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTAN-LLLSGATTYKLTPAQWFLREGS 141

Query: 121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLG 180
                +AS+  L  I+++RY  ++K        N   + L++S  W++  I+   PIM G
Sbjct: 142 MFVALSASVFSLLAIAIERYITMLKMK-LHNGSNNFRLFLLISACWVISLILGGLPIM-G 199

Query: 181 WYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWI 240
           W              +  + + + +Y  +  +  F +    +V +      L+   N++ 
Sbjct: 200 WNCISAL-----SSCSTVLPLYHKHYI-LFCTTVFTLLLLSIVILYCRIYSLVRTRNIF- 252

Query: 241 LPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYY 300
                     ML        K Y+       I + ++     S + +       +     
Sbjct: 253 ---------EMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTN 303

Query: 301 RIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTLNAK 360
            +  +        ++     V  ++++        ++    ++  +    +     +   
Sbjct: 304 GVITKD-EAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGF 362

Query: 361 KKKKKKKKKKKKKKKKKKKKKS 382
               +  ++K+  +      KS
Sbjct: 363 TNSLRMLQQKRWDEAAVNLAKS 384

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score =  135 bits (341), Expect = 2e-36
 Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 1   MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNL 60
           M+N +    + + NI   STN S  + F   +   +      +       I++T+++GN+
Sbjct: 1   MDNVLPVDSDLSPNI---STNTSEPNQFVQPAWQIV------LWAAAYTVIVVTSVVGNV 51

Query: 61  LVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120
           +V+  ++ H+++R +TNYF+V+LAFA+  +A      N   ++ +EWY+G F C   N F
Sbjct: 52  VVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFF 111

Query: 121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISF-TPIML 179
            +    ASI  +  ++ DRY AI+ PLQ    ++     +++  +W+L  +++F      
Sbjct: 112 PIAAVFASIYSMTAVAFDRYMAIIHPLQ--PRLSATATKVVICVIWVLALLLAFPQGYYS 169

Query: 180 GWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTM 225
              T P         P     +    Y +  + + +++P  V+   
Sbjct: 170 TTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYA 215

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score =  129 bits (327), Expect = 1e-34
 Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 21/228 (9%)

Query: 9   LNYTYNINYTSTNFSNTSLFPTNSTIHIHIFP-----FIIKGMLMCFIIITAILGNLLVI 63
           +N T   N+    FSN +    +       +      F +    M  +I+     N L +
Sbjct: 2   MNGTEGPNFYVP-FSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTL 60

Query: 64  ISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVY 123
              ++H+KLR   NY +++LA ADL +           SL   + FG   C++   F   
Sbjct: 61  YVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATL 120

Query: 124 FSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYT 183
               ++  L  ++++RY  + KP+       +N  ++ ++  W++    +  P ++GW  
Sbjct: 121 GGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAA-PPLVGWSR 178

Query: 184 TPDHKQYRKHHPNVCIF--------VVNVYYALISSSISFWIPGFVMV 223
                         C            N  + +    + F IP  V+ 
Sbjct: 179 YIPEG-----MQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 221

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score =  126 bits (318), Expect = 8e-33
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 12/174 (6%)

Query: 19  STNFSNTSLFPTNSTIHIH----IFP------FIIKGMLMCFIIITAILGNLLVIISVIK 68
             +  +   +  N +I +H     F       +   G+ +    I    GN +VI    K
Sbjct: 2   GRDLRDNETWWYNPSIVVHPHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTK 61

Query: 69  HRKLRIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTA 127
            + L+   N F+++LAF+D   +L    P   I     +W FG+  C V+      F   
Sbjct: 62  TKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 121

Query: 128 SILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
           SI+ +  IS+DRY  I +P+     M+     +M+  VW+   + +  P + GW
Sbjct: 122 SIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGP-IFGW 174

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score =  118 bits (297), Expect = 8e-30
 Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 5/202 (2%)

Query: 24  NTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSL 83
           + SL P   +  +     I    L   + +  + GN LV+  ++++ K++  TN ++ +L
Sbjct: 2   SHSLCPQTGSPSM--VTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNL 59

Query: 84  AFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI 143
           A AD L     +PF ++  L   W FG  +C +  S D Y    SI  LC +SVDRY A+
Sbjct: 60  ALADALATST-LPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAV 118

Query: 144 VKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYR-KHHPNVCIFVV 202
             P++           ++    WIL   I   P+M    T             +   +  
Sbjct: 119 CHPVKALDFRTPRNAKIVNVCNWILSSAIG-LPVMFMATTKYRQGSIDCTLTFSHPTWYW 177

Query: 203 NVYYALISSSISFWIPGFVMVT 224
                +     +F +P  ++  
Sbjct: 178 ENLLKICVFIFAFIMPVLIITV 199

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score =  117 bits (295), Expect = 2e-29
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 1   MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNL 60
              +IY S NYT  +     +      F   +     IF   I       I +T I+GN 
Sbjct: 12  EGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTI----YSIIFLTGIVGNG 67

Query: 61  LVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120
           LVI+ +   +KLR +T+ + + L+ ADLL  +  +PF A V     WYFG F+C   +  
Sbjct: 68  LVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWA-VDAVANWYFGNFLCKAVHVI 125

Query: 121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISF-TPIML 179
                 +S+  L  IS+DRY AIV               ++   VWI   +++    I  
Sbjct: 126 YTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFA 185

Query: 180 GWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVT 224
                 D     + +PN    VV  +  ++   +   +PG V+++
Sbjct: 186 NVSEADDRYICDRFYPNDLWVVVFQFQHIM---VGLILPGIVILS 227

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Length = 32

 Score = 50.5 bits (121), Expect = 5e-09
 Identities = 13/29 (44%), Positives = 22/29 (75%)

Query: 126 TASILHLCCISVDRYYAIVKPLQYPIIMN 154
           T+SI+HLC IS+DRY++I + ++Y +   
Sbjct: 1   TSSIVHLCAISLDRYWSITQAIEYNLKRT 29

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	382
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	100.0
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	100.0
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	100.0
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	100.0
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	100.0
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	100.0
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.98
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.98
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.98
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.98
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.97
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.97
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.97
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.97
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.97
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.97
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.97
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.97
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.36
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	96.96
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	96.53
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	96.04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	95.89
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	95.85
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	95.7
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	95.4
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	95.29
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	95.08
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	94.87
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	94.86
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	94.81
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	94.8
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	94.68
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	93.43
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	92.74
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	91.41
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	88.77
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	85.6
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	83.75

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=100.00  E-value=1e-36  Score=300.77  Aligned_cols=200  Identities=19%  Similarity=0.343  Sum_probs=163.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---chhHHHHHHHHHHHHHHHHhHhHHHHHHHhc--Ccccc
Q psy16861         35 HIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLR---IITNYFVVSLAFADLLVALCVMPFNAIVSLT--DEWYF  109 (382)
Q Consensus        35 ~~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~---~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~--~~~~~  109 (382)
                      ..+.+..++..++|.+++++|++||+++++++.+.+++|   +++|+|++|||++|++++++.+|+.+.....  +.|.+
T Consensus        26 ~~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~  105 (510)
T 4grv_A           26 NTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAF  105 (510)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSS
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEh
Confidence            345567788899999999999999999999999876544   7899999999999999999999998887653  57999


Q ss_pred             cccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcc
Q psy16861        110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQ  189 (382)
Q Consensus       110 ~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~  189 (382)
                      |+.+|++..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|+++. +.......+
T Consensus       106 g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~-~~~~~~~~~  184 (510)
T 4grv_A          106 GDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFT-MGLQNRSAD  184 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHH-EEEEECSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHh-hcccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999988543 322221111


Q ss_pred             cccCCCccccee----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        190 YRKHHPNVCIFV----VNVYYALISSSISFWIPGFVMVTMLVVNTVLLML  235 (382)
Q Consensus       190 ~~~~~~~~c~~~----~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~  235 (382)
                      ........|...    ....|....+++.|++|+++|+++|..|.+.+..
T Consensus       185 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~  234 (510)
T 4grv_A          185 GTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTV  234 (510)
T ss_dssp             SCCGGGEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence            111112233322    3345777788889999999999999999998863

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=100.00  E-value=3.4e-33  Score=275.03  Aligned_cols=199  Identities=37%  Similarity=0.681  Sum_probs=170.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHh
Q psy16861         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW  117 (382)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  117 (382)
                      ....++..+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.+++.+|..+...+.+.|.++...|++.
T Consensus        37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~  116 (500)
T 2rh1_A           37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW  116 (500)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHH
Confidence            34456778899999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCC-CcccccCCCc
Q psy16861        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD-HKQYRKHHPN  196 (382)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~  196 (382)
                      .++..++..+|++++++||+|||++|++|++|...++++++..+++++|+++++++++|.+.+|..... ....|.....
T Consensus       117 ~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~~~~~~~c~~~~~  196 (500)
T 2rh1_A          117 TSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEET  196 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchheeeecccccCcceeccccc
Confidence            999999999999999999999999999999999889999999999999999999997776666544322 1122332222


Q ss_pred             ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        197 VCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLS  236 (382)
Q Consensus       197 ~c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~  236 (382)
                      .|.......|....+++.|++|+++++++|..+.+.+...
T Consensus       197 ~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~  236 (500)
T 2rh1_A          197 CCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQ  236 (500)
T ss_dssp             CCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333455678888889999999999999999999888654

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=100.00  E-value=9.1e-34  Score=265.37  Aligned_cols=288  Identities=15%  Similarity=0.209  Sum_probs=206.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccch
Q psy16861         35 HIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMC  114 (382)
Q Consensus        35 ~~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C  114 (382)
                      ..+.+...+..+++.+++++|++||+++++++.+++++|++.|++++|||++|++.++..+|..+.....+.|.+++..|
T Consensus        32 ~~~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C  111 (349)
T 1u19_A           32 LAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGC  111 (349)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHH
Confidence            34456667888999999999999999999999999999999999999999999999998899988888888899999999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCC--Cccccc
Q psy16861        115 DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD--HKQYRK  192 (382)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~--~~~~~~  192 (382)
                      ++..++..++..+|++++++||+|||++|++|++|++ .+++++...++++|+++++.++|+. .++..+..  ....|.
T Consensus       112 ~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~-~~~~~~~~~i~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~C~  189 (349)
T 1u19_A          112 NLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPL-VGWSRYIPEGMQCSCG  189 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGG-TTSSCCEEETTTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccee-eccchhHHHHHHHHHHHHHHHHHHH-HheeeeeccCCceeec
Confidence            9999999999999999999999999999999999877 6889999999999999999998885 44433221  111222


Q ss_pred             CCCcc-cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCCcee
Q psy16861        193 HHPNV-CIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVC  271 (382)
Q Consensus       193 ~~~~~-c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (382)
                      ..... ........|.....++.+++|+++++++|..+.+.+.                     +...+.+..+......
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~---------------------~~~~~~~~~~~~~~~~  248 (349)
T 1u19_A          190 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVK---------------------EAAAQQQESATTQKAE  248 (349)
T ss_dssp             CCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSC---------------------SCCCSSCSSSHHHHHH
T ss_pred             ccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HhhhhhccchhhHHHH
Confidence            11111 1112345677788888999999999999976664331                     1100000000000001


Q ss_pred             eEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccceeee
Q psy16861        272 IFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVR  351 (382)
Q Consensus       272 ~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y~~~  351 (382)
                      ....+....++..+++||+|+.++.+....          . ..  ...     ...-..........++..||++|...
T Consensus       249 ~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~----------~-~~--~~~-----~~~~~~~~~~l~~~ns~~nPiiY~~~  310 (349)
T 1u19_A          249 KEVTRMVIIMVIAFLICWLPYAGVAFYIFT----------H-QG--SDF-----GPIFMTIPAFFAKTSAVYNPVIYIMM  310 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------T-TT--SCC-----CHHHHHHHHHHGGGGGTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhee----------c-CC--ccc-----chHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            113345666778889999998876544221          0 00  000     00000011122356899999999999


Q ss_pred             ccccccchhccc
Q psy16861        352 THSVTLNAKKKK  363 (382)
Q Consensus       352 ~~~~~~~~~~~~  363 (382)
                      +++++++.++.-
T Consensus       311 ~~~fR~~~~~~~  322 (349)
T 1u19_A          311 NKQFRNCMVTTL  322 (349)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHh
Confidence            999998876643

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=100.00  E-value=1.7e-32  Score=258.56  Aligned_cols=292  Identities=19%  Similarity=0.337  Sum_probs=205.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhH
Q psy16861         37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV  116 (382)
Q Consensus        37 ~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~  116 (382)
                      +.+...+..+++.+++++|++||+++++++.+++++|++.|++++|||++|++.+++.+|..+.....+.|..++..|++
T Consensus        28 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~  107 (364)
T 2ks9_A           28 PAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKF  107 (364)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHh
Confidence            33444566888999999999999999999999999999999999999999999999889998888888899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCc
Q psy16861        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPN  196 (382)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (382)
                      ..++..++..+|++++++||+|||++|++|++|+  .+++++..+++++|+++++.++|+..............|.....
T Consensus       108 ~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~~~~~  185 (364)
T 2ks9_A          108 HNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPR--LSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWP  185 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTS--CCHHHHHHHHHHHHHHHHHHHTTTTTTSCCCBCTTCSSBCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccchHHHHHHHHHHHHHHHHhHHHHHhhheecCCCCEEeecCC
Confidence            9999999999999999999999999999999976  58888999999999999999988754433222222223332211


Q ss_pred             cc-ceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCCceeeEee
Q psy16861        197 VC-IFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVV  275 (382)
Q Consensus       197 ~c-~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (382)
                      .. .......|.....++.+++|+++++++|..+.+.+.....                 ..+.....++ .........
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~-----------------~~~~~~~~~~-~~~~~~k~~  247 (364)
T 2ks9_A          186 EHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEI-----------------PGDSSDRYHE-QVSAKRKVV  247 (364)
T ss_dssp             CCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCC-----------------SSSSSSCSSH-HHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------CCCcchhhhh-hHHhhhhHH
Confidence            11 1123346777888899999999999999988865521100                 0000000000 000111244


Q ss_pred             cchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccceeeecccc
Q psy16861        276 NVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSV  355 (382)
Q Consensus       276 ~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y~~~~~~~  355 (382)
                      +....++..+++||+|+.++.+....          . ......  .  ....-......-...++..||++|...++++
T Consensus       248 ~~~~~v~~~f~~~~~P~~i~~~~~~~----------~-~~~~~~--~--~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~f  312 (364)
T 2ks9_A          248 KMMIVVVCTFAICWLPFHIFFLLPYI----------N-PDLYLK--K--FIQQVYLAIMWLAMSSTMYNPIIYCCLNDRF  312 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----------S-TTSCSS--S--CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh----------C-cccchh--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            55677788899999998876554321          0 000000  0  0000000000112357889999999999999


Q ss_pred             ccchhccc
Q psy16861        356 TLNAKKKK  363 (382)
Q Consensus       356 ~~~~~~~~  363 (382)
                      +++.++.-
T Consensus       313 R~~~~~~~  320 (364)
T 2ks9_A          313 RLGFKHAF  320 (364)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877644

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=100.00  E-value=1.5e-32  Score=267.30  Aligned_cols=194  Identities=26%  Similarity=0.522  Sum_probs=167.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHh
Q psy16861         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW  117 (382)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  117 (382)
                      .....+..+++.+++++|++||+++++++.++++++++.|+|++|||++|++.+++.+|..+.....+.|.++...|++.
T Consensus        20 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~   99 (467)
T 3uon_A           20 TFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLW   99 (467)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCcc
Q psy16861        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNV  197 (382)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (382)
                      .++..++..+|++++++||+|||++|++|++|....+.+++..+++++|++++++++|+.+. +.......   ......
T Consensus       100 ~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~-~~~~~~~~---~~~~~~  175 (467)
T 3uon_A          100 LALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILF-WQFIVGVR---TVEDGE  175 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCC---CCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH-hhhccccc---CCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999988554 22111100   011122


Q ss_pred             ccee--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        198 CIFV--VNVYYALISSSISFWIPGFVMVTMLVVNTVLLML  235 (382)
Q Consensus       198 c~~~--~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~  235 (382)
                      |...  ....|....+++.|++|+++++++|+.+.+.+..
T Consensus       176 C~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~  215 (467)
T 3uon_A          176 CYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKS  215 (467)
T ss_dssp             CCCGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322  3456788888999999999999999999988853

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=100.00  E-value=1.4e-32  Score=270.13  Aligned_cols=196  Identities=24%  Similarity=0.364  Sum_probs=165.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchh
Q psy16861         36 IHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCD  115 (382)
Q Consensus        36 ~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~  115 (382)
                      .......+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+ +.+|..+..... .|.++...|+
T Consensus        43 ~~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~-~~~~~~~~C~  120 (502)
T 3odu_A           43 NANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA-NWYFGNFLCK  120 (502)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT-CCCSHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCcCCchhhh
Confidence            34556788899999999999999999999999999999999999999999999995 578888776655 6899999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCC
Q psy16861        116 VWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHP  195 (382)
Q Consensus       116 ~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (382)
                      +..++..++..+|++++++||+|||++|++|++|....+++++..+++++|++++++++|+.+............|....
T Consensus       121 ~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  200 (502)
T 3odu_A          121 AVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFY  200 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEECSSSEEEEECC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHHHheeeeccCCceEEeecC
Confidence            99999999999999999999999999999999999999999999999999999999999987654333322222232111


Q ss_pred             cccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        196 NVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLML  235 (382)
Q Consensus       196 ~~c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~  235 (382)
                        ....+...|.....++.+++|+++++++|+.+.+.+..
T Consensus       201 --~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~  238 (502)
T 3odu_A          201 --PNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSH  238 (502)
T ss_dssp             --SSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGG
T ss_pred             --CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              11234455777788899999999999999999988854

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.98  E-value=1.5e-32  Score=271.59  Aligned_cols=185  Identities=19%  Similarity=0.315  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhhHH
Q psy16861         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF  120 (382)
Q Consensus        41 ~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~  120 (382)
                      ..+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|..+.. ..+.|..+...|++..++
T Consensus        63 ~~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~~~~  141 (520)
T 3v2y_A           63 IKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLREGS  141 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchHHHH
Confidence            3678899999999999999999999999999999999999999999999999888776665 566788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCcccce
Q psy16861        121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF  200 (382)
Q Consensus       121 ~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  200 (382)
                      ..++.++|++++++||+|||++|+ |++|...++++++..+++++|++++++++||+ +++....+ .       ..|..
T Consensus       142 ~~~~~~~S~~~l~~isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~-~~~~~~~~-~-------~~C~~  211 (520)
T 3v2y_A          142 MFVALSASVFSLLAIAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPI-MGWNCISA-L-------SSCST  211 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTT-TTCBCTTC-G-------GGBCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHH-HeeccccC-C-------Ccccc
Confidence            999999999999999999999999 99999999999999999999999999999884 55554422 1       23332


Q ss_pred             eh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16861        201 VV---NVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSN  237 (382)
Q Consensus       201 ~~---~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~  237 (382)
                      .+   ...|. ...++.|++|+++++++|..|.+.+....
T Consensus       212 ~~~~~~~~~~-~~~~~~~~lPl~ii~~~Y~~I~~~l~~~~  250 (520)
T 3v2y_A          212 VLPLYHKHYI-LFCTTVFTLLLLSIVILYCRIYSLVRTRN  250 (520)
T ss_dssp             SSTTBBHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            22   23333 44556799999999999999999887654

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.98  E-value=5.9e-32  Score=262.82  Aligned_cols=197  Identities=21%  Similarity=0.369  Sum_probs=168.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhH
Q psy16861         37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV  116 (382)
Q Consensus        37 ~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~  116 (382)
                      .....++..+++.+++++|++||+++++++.++++++++.|+|++|||++|++.++. +|..+.....+.|.++...|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~   91 (464)
T 4dkl_A           13 SMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKI   91 (464)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhh
Confidence            345567888999999999999999999999999999999999999999999999876 9999998888999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCc
Q psy16861        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPN  196 (382)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (382)
                      ..++..++..+|++++++||+|||++|++|++|....+++++..+++++|++++++++|+.+.....+......|.....
T Consensus        92 ~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~c~~~~~  171 (464)
T 4dkl_A           92 VISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFS  171 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCCEEETTEEECCBCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHHheeecccCCCceEEeecC
Confidence            99999999999999999999999999999999998889999999999999999999998876544443333333433222


Q ss_pred             ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        197 VCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLM  234 (382)
Q Consensus       197 ~c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~  234 (382)
                      .....+...|....+++.+++|+++++++|+.+.+.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~  209 (464)
T 4dkl_A          172 HPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLK  209 (464)
T ss_dssp             SSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCC
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222355677888899999999999999999987764

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.98  E-value=9.7e-32  Score=262.92  Aligned_cols=199  Identities=18%  Similarity=0.202  Sum_probs=156.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHh-cCcccccccch
Q psy16861         36 IHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSL-TDEWYFGYFMC  114 (382)
Q Consensus        36 ~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~-~~~~~~~~~~C  114 (382)
                      +......+..+++.+++++|++||+++++++.+++++++++|+|++|||++|++.++. +|+.+.... .+.|.++...|
T Consensus        15 ~~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~-~~~~~~~~~~~~~~~~~~~~C   93 (484)
T 3vw7_A           15 TSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFKISYYFSGSDWQFGSELC   93 (484)
T ss_dssp             TCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTTSCCCSCHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcccchhHH
Confidence            3455667889999999999999999999999999999999999999999999999765 555555444 45899999999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhccccc--CCCccccc
Q psy16861        115 DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTT--PDHKQYRK  192 (382)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~--~~~~~~~~  192 (382)
                      ++..++..++..+|++++++||+|||++|++|++|...++++++..+++++|++++++++|+.+......  ......|.
T Consensus        94 ~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~C~  173 (484)
T 3vw7_A           94 RFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPGLGITTCH  173 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEETTTTEEEES
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCceee
Confidence            9999999999999999999999999999999999998899999999999999999999988865432211  11122232


Q ss_pred             CCCccc-ceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        193 HHPNVC-IFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLML  235 (382)
Q Consensus       193 ~~~~~c-~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~  235 (382)
                      ...... .......|.....++.|++|+++++++|+.+.+.+..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~  217 (484)
T 3vw7_A          174 DVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSS  217 (484)
T ss_dssp             SSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence            221111 1122333667778899999999999999999988753

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.97  E-value=2.6e-33  Score=258.24  Aligned_cols=292  Identities=27%  Similarity=0.424  Sum_probs=215.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhh
Q psy16861         39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWN  118 (382)
Q Consensus        39 ~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~  118 (382)
                      .......+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++..+|..+.....+.|.+++..|++..
T Consensus         9 ~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~   88 (315)
T 4amj_A            9 QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWT   88 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHHH
Confidence            34467788999999999999999999999999999999999999999999998888999999888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccC-CCcccccCCCcc
Q psy16861        119 SFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTP-DHKQYRKHHPNV  197 (382)
Q Consensus       119 ~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  197 (382)
                      ++..++..+|++++++||+|||++|++|++|+...+++++..+++++|+++++.+++|.+..+.... .....|......
T Consensus        89 ~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  168 (315)
T 4amj_A           89 SLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGC  168 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCCCcccccccccc
Confidence            9999999999999999999999999999999888899999999999999999999888765443322 222234444444


Q ss_pred             cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCCceeeEeecc
Q psy16861        198 CIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNV  277 (382)
Q Consensus       198 c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (382)
                      |.......|.....++.+++|+++++++|..+.+.+.....-.              .....++..+ ..........+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~--------------~~~~~~~~~~-~~~~~~~k~~~~  233 (315)
T 4amj_A          169 CDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKI--------------DRASKRKTSR-VMLMREHKALKT  233 (315)
T ss_dssp             CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC--------------------------CH-HHHHHHHHHHHH
T ss_pred             chhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------Ccccccccch-hhhhhhhhHHHH
Confidence            5555677888888899999999999999999988774322100              0000000000 000011123445


Q ss_pred             hhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccceeeecccccc
Q psy16861        278 YYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRTHSVTL  357 (382)
Q Consensus       278 ~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y~~~~~~~~~  357 (382)
                      ...++..+++||+|+.+..+....-            .....       .........-...++..||.+|. .++++++
T Consensus       234 ~~~~~~~f~i~~~P~~i~~~~~~~~------------~~~~~-------~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~  293 (315)
T 4amj_A          234 LGIIMGVFTLCWLPFFLVNIVNVFN------------RDLVP-------DWLFVAFNWLGYANSAMNPIIYC-RSPDFRK  293 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC------------TTSSC-------HHHHHHHHHHHHHGGGTHHHHGG-GSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------------Cccch-------HHHHHHHHHHHHHhccccHHHHc-CcHHHHH
Confidence            6677788999999998876653210            00000       00000001112468899999999 8999998


Q ss_pred             chhcccch
Q psy16861        358 NAKKKKKK  365 (382)
Q Consensus       358 ~~~~~~~~  365 (382)
                      +.++.-.+
T Consensus       294 ~~~~~l~~  301 (315)
T 4amj_A          294 AFKRLLAF  301 (315)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhCC
Confidence            88765543

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.97  E-value=4.5e-31  Score=242.00  Aligned_cols=279  Identities=20%  Similarity=0.292  Sum_probs=200.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHh
Q psy16861         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW  117 (382)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  117 (382)
                      .....+..+++.+++++|++||+++++++.++|++|+++|+++.|||++|++.++. +|..+.... ++|..|+..|++.
T Consensus         8 ~~~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~-~p~~~~~~~-~~~~~~~~~c~~~   85 (296)
T 2lnl_A            8 TLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT-LPIWAASKV-NGWIFGTFLCKVV   85 (296)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHH-HHHHHHHHH-SSSCCSSHHHHHH
T ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHh-hhHHHhhcc-CCCccchhHHHHH
Confidence            34456777889999999999999999999999999999999999999999998764 777666555 4689999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCc-ccccCCCc
Q psy16861        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHK-QYRKHHPN  196 (382)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~  196 (382)
                      .++..++..+|++++++||+|||++|++|++|+... ++++..+++++|+++++.++|+.........+.. ..+.....
T Consensus        86 ~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~-~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~  164 (296)
T 2lnl_A           86 SLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQK-RHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLG  164 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCSCCS
T ss_pred             hhhhhhhHHHHHHHHHHHHhhhhhhhhhccccchhh-hhhhHheehHHHHHHHHHhcchhhcceeecCCCCCceeeeecc
Confidence            999999999999999999999999999999987754 4667778889999999999888654333222222 12222222


Q ss_pred             ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCCceeeEeec
Q psy16861        197 VCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVN  276 (382)
Q Consensus       197 ~c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (382)
                      .........+......+.+++|+.++..+|..+.+++                     .+...+++         ....+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~---------------------~~~~~~~~---------~k~~~  214 (296)
T 2lnl_A          165 NDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTL---------------------FKAHMGQK---------HRAMR  214 (296)
T ss_dssp             CCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTS---------------------SSCCCHHH---------HTHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhhhhh---------hhHHH
Confidence            2223345667788889999999999999997765332                     11111110         11456


Q ss_pred             chhhhhhhhhhhhHhHHHHHHHHHHHHHHHH----HhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccceeeec
Q psy16861        277 VYYALISSSISFWIPGFVMVTMYYRIYKEAV----RQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNVRT  352 (382)
Q Consensus       277 ~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y~~~~  352 (382)
                      ....++..+++||+|+.++.+.+........    ........             .......-.-.|+..||.+|..++
T Consensus       215 ~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~ns~~NPiIY~~~~  281 (296)
T 2lnl_A          215 VIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGR-------------ALDATEILGFLHSCLNPIIYAFIG  281 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTH-------------HHHHHHHHGGGGGTHHHHHHHHHC
T ss_pred             HHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHH-------------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6788889999999999888776543110000    00000000             000001112468899999999999


Q ss_pred             cccccchhcc
Q psy16861        353 HSVTLNAKKK  362 (382)
Q Consensus       353 ~~~~~~~~~~  362 (382)
                      +++|++.++-
T Consensus       282 ~~fR~~~~~l  291 (296)
T 2lnl_A          282 QNFRHGFLKI  291 (296)
T ss_dssp             SHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887653

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.97  E-value=4e-31  Score=258.58  Aligned_cols=196  Identities=29%  Similarity=0.421  Sum_probs=162.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhH
Q psy16861         37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV  116 (382)
Q Consensus        37 ~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~  116 (382)
                      ......+..+++.+++++|++||+++++++.++++++++.|+|++|||++|++.+++.+|..+....  .|..+...|++
T Consensus        17 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~--~~~~~~~~C~~   94 (488)
T 3eml_A           17 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLF   94 (488)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT--CCEECHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccchHHHH
Confidence            3444567889999999999999999999999999999999999999999999999999998776544  57888999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCC------Cccc
Q psy16861        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD------HKQY  190 (382)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~------~~~~  190 (382)
                      ..++..++..+|++++++||+|||++|++|++|....+++++..+++++|++++++++|+. +++.....      ....
T Consensus        95 ~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~  173 (488)
T 3eml_A           95 IACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM-LGWNNCGQPKEGKNHSQG  173 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGG-GTCCSSCC-------CCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHH-hccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999998885 44443322      1233


Q ss_pred             ccCCCcccce---ehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        191 RKHHPNVCIF---VVNVYYALISSSISFWIPGFVMVTMLVVNTVLLML  235 (382)
Q Consensus       191 ~~~~~~~c~~---~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~  235 (382)
                      |......|..   .....+....+++.+++|+++++++|+.+.+.+..
T Consensus       174 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~  221 (488)
T 3eml_A          174 CGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARR  221 (488)
T ss_dssp             SCTTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccccceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444434432   22344556668889999999999999999988853

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.97  E-value=6.1e-31  Score=257.07  Aligned_cols=189  Identities=39%  Similarity=0.629  Sum_probs=158.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhc-Ccccccccch
Q psy16861         36 IHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT-DEWYFGYFMC  114 (382)
Q Consensus        36 ~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~-~~~~~~~~~C  114 (382)
                      .......+..+++.+++++|++||+++++++.++++++++.|+|++|||++|++.+++.+|..+...+. +.|.++...|
T Consensus        33 ~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C  112 (481)
T 3pbl_A           33 SQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICC  112 (481)
T ss_dssp             --------CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchh
Confidence            334455677788999999999999999999999999999999999999999999999999988877666 6799999999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccc
Q psy16861        115 DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQY---PIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYR  191 (382)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~---~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~  191 (382)
                      ++..++..++..+|++++++||+|||++|++|++|   ....+.+++..+++++|++++++++|+.+ ++.....     
T Consensus       113 ~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~-~~~~~~~-----  186 (481)
T 3pbl_A          113 DVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLF-GFNTTGD-----  186 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHT-TTCCCSS-----
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh-eecccCC-----
Confidence            99999999999999999999999999999999998   56778899999999999999999998854 4433221     


Q ss_pred             cCCCcccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        192 KHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLM  234 (382)
Q Consensus       192 ~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~  234 (382)
                         ...|.... ..|.....++.|++|+++++++|+.+.+.+.
T Consensus       187 ---~~~C~~~~-~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~  225 (481)
T 3pbl_A          187 ---PTVCSISN-PDFVIYSSVVSFYLPFGVTVLVYARIYVVLK  225 (481)
T ss_dssp             ---TTCCSCCC-HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCcccccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               22344333 3477778899999999999999999998875

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.97  E-value=2.4e-31  Score=257.82  Aligned_cols=189  Identities=25%  Similarity=0.465  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchhHhhHHH
Q psy16861         42 IIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFD  121 (382)
Q Consensus        42 ~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~  121 (382)
                      .+..+++.+++++|++||+++++++.++++++++.|+|++|||++|++.+++.+|..+.....+.|.++...|++..++.
T Consensus         9 ~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~   88 (452)
T 3rze_A            9 MPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMD   88 (452)
T ss_dssp             CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCcccce-
Q psy16861        122 VYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF-  200 (382)
Q Consensus       122 ~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-  200 (382)
                      .++..+|++++++||+|||++|++|++|....+++++..+++++|++++++++|..  ++........  ......|.. 
T Consensus        89 ~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~--~~~~~~~~~~--~~~~~~C~~~  164 (452)
T 3rze_A           89 YVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPIL--GWNHFMQQTS--VRREDKCETD  164 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHHHHH--CCCC---------CCSSSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHHHHH--HHHhcccccc--cCCCCeecCC
Confidence            99999999999999999999999999999999999999999999999999988743  3322221111  112223432 


Q ss_pred             -ehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        201 -VVNVYYALISSSISFWIPGFVMVTMLVVNTVLLM  234 (382)
Q Consensus       201 -~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~  234 (382)
                       .....|.....++.|++|+++++++|+.+.+.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~  199 (452)
T 3rze_A          165 FYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVR  199 (452)
T ss_dssp             CTTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2345577888899999999999999999998774

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.97  E-value=2.9e-32  Score=269.27  Aligned_cols=308  Identities=27%  Similarity=0.410  Sum_probs=216.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchh
Q psy16861         36 IHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCD  115 (382)
Q Consensus        36 ~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~  115 (382)
                      ..........+++.+++++|++||+++++++.+++++|++.|++++|||++|++.+++.+|..+.....+.|.++...|+
T Consensus       177 ~~~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~  256 (514)
T 3sn6_R          177 ADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCE  256 (514)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhh
Confidence            34455677889999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCC-cccccCC
Q psy16861        116 VWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDH-KQYRKHH  194 (382)
Q Consensus       116 ~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~-~~~~~~~  194 (382)
                      +..++..++..+|++++++||+|||++|++|++|+...+++++..+++++|+++++++++|.+.++...... ...|...
T Consensus       257 ~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~~~~c~~~  336 (514)
T 3sn6_R          257 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAE  336 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---CHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceecccCcccceeec
Confidence            999999999999999999999999999999999998889999999999999999999988877666544332 2223333


Q ss_pred             CcccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccc----ccc-cCCc
Q psy16861        195 PNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQ----YRK-HHPN  269 (382)
Q Consensus       195 ~~~c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~  269 (382)
                      ...|.......|....+++.+++|+++++++|..+.+.+.....-.......... .......+.++.    .++ ....
T Consensus       337 ~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  415 (514)
T 3sn6_R          337 ETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHV-QNLSQVEQDGRTGHGLRRSSKFCL  415 (514)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------------CH
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc-cccccccccccccccccchhhhhH
Confidence            3333444567788889999999999999999999998887543311000000000 000000000000    000 0000


Q ss_pred             eeeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCcccee
Q psy16861        270 VCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRN  349 (382)
Q Consensus       270 ~~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y~  349 (382)
                      ...........++..+++||+|+.++.+....-            .....       .........-...++..||++|.
T Consensus       416 ~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~------------~~~~~-------~~~~~~~~~l~~~ns~~NPiIY~  476 (514)
T 3sn6_R          416 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ------------DNLIR-------KEVYILLNWIGYVNSGFNPLIYC  476 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------------TTSSC-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------ccccc-------hHHHHHHHHHHHHHHhhhHHhhc
Confidence            111234456677788999999998876653220            00000       00000011122467889999999


Q ss_pred             eeccccccchhcccc
Q psy16861        350 VRTHSVTLNAKKKKK  364 (382)
Q Consensus       350 ~~~~~~~~~~~~~~~  364 (382)
                       .++++++..++.-.
T Consensus       477 -~~~~fR~~~~~~l~  490 (514)
T 3sn6_R          477 -RSPDFRIAFQELLC  490 (514)
T ss_dssp             -TCHHHHHHHHTTCC
T ss_pred             -CCHHHHHHHHHHhC
Confidence             88888887776543

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.97  E-value=9.3e-31  Score=253.25  Aligned_cols=198  Identities=27%  Similarity=0.392  Sum_probs=161.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCcccccccchh
Q psy16861         36 IHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCD  115 (382)
Q Consensus        36 ~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~  115 (382)
                      .+.....+..+++.+++++|++||+++++++.++++++++.|+|++|||++|++.+++.+|..+....  .|..+...|+
T Consensus        26 ~~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~--~~~~~~~~C~  103 (447)
T 4eiy_A           26 PPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCL  103 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCEEEHHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccCccHHH
Confidence            34455567888999999999999999999999999999999999999999999999998998776443  5677889999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCC------cc
Q psy16861        116 VWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDH------KQ  189 (382)
Q Consensus       116 ~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~------~~  189 (382)
                      +..++..++..+|++++++||+|||++|++|++|....+++++..+++++|++++++++|+. +++......      ..
T Consensus       104 ~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~-~~~~~~~~~~~~~~~~~  182 (447)
T 4eiy_A          104 FIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM-LGWNNCGQPKEGKNHSQ  182 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGG-GTCSSTTSCCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhh-heeccccccCccccccc
Confidence            99999999999999999999999999999999999889999999999999999999999884 444433221      12


Q ss_pred             cccCCCccccee---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16861        190 YRKHHPNVCIFV---VNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLS  236 (382)
Q Consensus       190 ~~~~~~~~c~~~---~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~  236 (382)
                      .|......|...   ....+....+++.+++|+++++++|+.+.+.+...
T Consensus       183 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~  232 (447)
T 4eiy_A          183 GCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQ  232 (447)
T ss_dssp             TCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233333333222   12334444566778999999999999999888754

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.97  E-value=5.9e-30  Score=248.25  Aligned_cols=292  Identities=18%  Similarity=0.267  Sum_probs=208.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhH-hHHHHHHHhcCcccccccchhH
Q psy16861         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCV-MPFNAIVSLTDEWYFGYFMCDV  116 (382)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~-~p~~~~~~~~~~~~~~~~~C~~  116 (382)
                      .....+..+++.+++++|++||+++++++.+++++|++.|++++|||++|++.+++. +|..+.....+.|.++...|++
T Consensus        31 ~~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~  110 (448)
T 2z73_A           31 DAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKV  110 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHH
Confidence            334567788999999999999999999999999999999999999999999998774 8888888888889999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccCCCcccccCCCc
Q psy16861        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPN  196 (382)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (382)
                      ..++..++..+|++++++||+|||++|++|++|+...+++++..+++++|++++++++++.+ ++.....+..     ..
T Consensus       111 ~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~-~~~~~~~~~~-----~~  184 (448)
T 2z73_A          111 YGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF-GWGAYTLEGV-----LC  184 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGG-TSSCEEECTT-----SS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHh-ceeeeeecCC-----ce
Confidence            99999999999999999999999999999999998899999999999999999999988854 4433221111     11


Q ss_pred             ccce------ehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCCce
Q psy16861        197 VCIF------VVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNV  270 (382)
Q Consensus       197 ~c~~------~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (382)
                      .|..      .....+.....++.+++|+++++++|..+.+.+...........         ......+.+........
T Consensus       185 ~c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  255 (448)
T 2z73_A          185 NCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA---------KRLNAKELRKAQAGANA  255 (448)
T ss_dssp             SEEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHH---------TTTCCTTHHHHHHHHHH
T ss_pred             eEecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhhHHHHhhhccccH
Confidence            2221      12345666777888999999999999999987764433111000         00000000000000000


Q ss_pred             eeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccceee
Q psy16861        271 CIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTRNV  350 (382)
Q Consensus       271 ~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y~~  350 (382)
                      .....+....++..+++||+|+.++.+++..-      .    .....        .............++..||++|..
T Consensus       256 ~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~------~----~~~~~--------~~~~~~~~~l~~~ns~~NPiIY~~  317 (448)
T 2z73_A          256 EMRLAKISIVIVSQFLLSWSPYAVVALLAQFG------P----LEWVT--------PYAAQLPVMFAKASAIHNPMIYSV  317 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------C----GGGCC--------HHHHHHHHHHHHHGGGSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC------C----cccCC--------hHHHHHHHHHHHHHHhhcchHHHH
Confidence            11134456677888899999998876654210      0    00000        000000111224678999999999


Q ss_pred             eccccccchhcc
Q psy16861        351 RTHSVTLNAKKK  362 (382)
Q Consensus       351 ~~~~~~~~~~~~  362 (382)
                      .+++++++.++.
T Consensus       318 ~~~~fR~~~~~~  329 (448)
T 2z73_A          318 SHPKFREAISQT  329 (448)
T ss_dssp             HCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            999999887664

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.36  E-value=1e-07  Score=55.29  Aligned_cols=30  Identities=40%  Similarity=0.869  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCcccchh
Q psy16861        127 ASILHLCCISVDRYYAIVKPLQYPIIMNQN  156 (382)
Q Consensus       127 ~s~~~l~~iaidRy~~I~~p~~~~~~~t~~  156 (382)
                      +|++++++|++|||++|++|++|...++++
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~   31 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIEYNLKRTPR   31 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGGGSSCCCC
T ss_pred             cHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence            689999999999999999999988766654

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=96.96  E-value=0.0053  Score=59.66  Aligned_cols=85  Identities=33%  Similarity=0.677  Sum_probs=60.1

Q ss_pred             HHHHhhhhcccccccccccccccCCCCcccccccCCce-eeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q psy16861        233 LMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNV-CIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRI  311 (382)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~  311 (382)
                      ..+..+|+.+++.+++|....|................ +.......|.+...++.+++|+.+++++|.+|++.++++.+
T Consensus       301 ~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~  380 (514)
T 3sn6_R          301 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ  380 (514)
T ss_dssp             HHHHHHHHHHHHTTHHHHHTTTTC---CHHHHHHHSSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhccceecccCcccceeecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45788999999999889888776655443322211122 22344567778888888999999999999999999999887


Q ss_pred             HhhccC
Q psy16861        312 ALSRTS  317 (382)
Q Consensus       312 ~~~~~~  317 (382)
                      +.+...
T Consensus       381 ~~~~~~  386 (514)
T 3sn6_R          381 KIDKSE  386 (514)
T ss_dssp             HHHHHC
T ss_pred             cccccc
Confidence            765443

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=96.53  E-value=0.02  Score=55.27  Aligned_cols=81  Identities=35%  Similarity=0.664  Sum_probs=56.3

Q ss_pred             HHHHHhhhhcccccccccccccccCCCCcccccccCCcee-eEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhH
Q psy16861        232 LLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVC-IFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQR  310 (382)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~  310 (382)
                      .+.+..+|+.+++.+++|....|................| .......|.+...++.+++|+++|+++|.+|++.+++|.
T Consensus       158 ~~~i~~~W~~s~~~~~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~  237 (500)
T 2rh1_A          158 RVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQL  237 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTTCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eehhhHHHHHHHHHHhcchheeeecccccCcceecccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3558889999999998888777655432221111111111 223445677778888899999999999999999999876


Q ss_pred             HH
Q psy16861        311 IA  312 (382)
Q Consensus       311 ~~  312 (382)
                      ++
T Consensus       238 ~~  239 (500)
T 2rh1_A          238 NI  239 (500)
T ss_dssp             SH
T ss_pred             HH
Confidence            55

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=96.04  E-value=0.0024  Score=57.20  Aligned_cols=80  Identities=36%  Similarity=0.730  Sum_probs=54.2

Q ss_pred             HHHHhhhhcccccccccccccccCCCCccccccc-CCceeeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q psy16861        233 LMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH-HPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRI  311 (382)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~  311 (382)
                      ..+..+|+.+.+.+.+|....+............ ....+.......|.....++.+++|+.++.++|.+|++.++++.+
T Consensus       130 ~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~  209 (315)
T 4amj_A          130 VIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR  209 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HhhhHHHHHHHHHHHHHHHHHhccccCCCccccccccccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4467789999888888887766555443322211 112223344566777778888899999999999999999988766


Q ss_pred             H
Q psy16861        312 A  312 (382)
Q Consensus       312 ~  312 (382)
                      +
T Consensus       210 ~  210 (315)
T 4amj_A          210 K  210 (315)
T ss_dssp             -
T ss_pred             c
Confidence            5

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=95.89  E-value=0.053  Score=51.33  Aligned_cols=78  Identities=17%  Similarity=0.298  Sum_probs=51.8

Q ss_pred             HHHHHhhhhcccccccccccccccCCCCcccccccCCceeeEe------ecchhhhhhhhhhhhHhHHHHHHHHHHHHHH
Q psy16861        232 LLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFV------VNVYYALISSSISFWIPGFVMVTMYYRIYKE  305 (382)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~  305 (382)
                      .+.+..+|+.+++.++++.+. |.....+     .....|...      ....+.+...++.+++|+++++++|.+|++.
T Consensus       153 ~~~i~~~W~~s~~~~~~~~~~-~~~~~~~-----~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~  226 (448)
T 2z73_A          153 FIMIIFVWLWSVLWAIGPIFG-WGAYTLE-----GVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMS  226 (448)
T ss_dssp             HHHHHHHHHHHHHHHSGGGGT-SSCEEEC-----TTSSSEEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-eeeeeec-----CCceeEecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345778899999988877653 3221111     112233221      1234556666777899999999999999999


Q ss_pred             HHHhHHHhhc
Q psy16861        306 AVRQRIALSR  315 (382)
Q Consensus       306 ~~~~~~~~~~  315 (382)
                      ++++.++.+.
T Consensus       227 l~~~~~~~~~  236 (448)
T 2z73_A          227 VSNHEKEMAA  236 (448)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998877654

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=95.85  E-value=0.094  Score=50.76  Aligned_cols=77  Identities=12%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             HHHHhhhhcccccccccccccccCCCCcccccccCCceeeE----eecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Q psy16861        233 LMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF----VVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVR  308 (382)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~  308 (382)
                      +.+..+|+.+++.++|+++........ .+........|..    .....|.++.+++.|++|+++|+++|.+|++.+++
T Consensus       156 ~~i~~~W~~s~~~~~p~~~~~~~~~~~-~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~  234 (510)
T 4grv_A          156 KFISAIWLASALLAIPMLFTMGLQNRS-ADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTV  234 (510)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHEEEEECS-SSSCCGGGEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeehHHHHHHHHHHHHHHHhhcccccc-cCCCCCCccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence            456677888888888776543211111 1111111122321    22345777778888999999999999999999987


Q ss_pred             hH
Q psy16861        309 QR  310 (382)
Q Consensus       309 ~~  310 (382)
                      +.
T Consensus       235 ~~  236 (510)
T 4grv_A          235 MV  236 (510)
T ss_dssp             SC
T ss_pred             Hh
Confidence            43

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=95.70  E-value=0.13  Score=48.28  Aligned_cols=81  Identities=25%  Similarity=0.422  Sum_probs=49.3

Q ss_pred             HHHHhhhhcccccccccccccccCCCCcccc---cccCCce---e---eEeecchhhhhhhhhhhhHhHHHHHHHHHHHH
Q psy16861        233 LMLSNVWILPGIISFTPIMLGWYTTPDHKQY---RKHHPNV---C---IFVVNVYYALISSSISFWIPGFVMVTMYYRIY  303 (382)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~---~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~  303 (382)
                      ..+..+|+.+++.++++.. .|.........   ...+...   |   .......+.....++.+++|+.+++++|.+|+
T Consensus       148 ~~i~~~Wi~s~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~  226 (447)
T 4eiy_A          148 GIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIF  226 (447)
T ss_dssp             HHHHHHHHHHHHHHTGGGG-TCSSTTSCCHHHHHHTTCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHhhhh-eeccccccCccccccccccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466779999888887765 34333222111   1111111   1   01112334455566778999999999999999


Q ss_pred             HHHHHhHHHhh
Q psy16861        304 KEAVRQRIALS  314 (382)
Q Consensus       304 ~~~~~~~~~~~  314 (382)
                      +.++++.++..
T Consensus       227 ~~l~~~~~~~~  237 (447)
T 4eiy_A          227 LAARRQLADLE  237 (447)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhhhh
Confidence            99999876643

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=95.40  E-value=0.12  Score=49.57  Aligned_cols=36  Identities=17%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             chhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHH
Q psy16861        277 VYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIA  312 (382)
Q Consensus       277 ~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~  312 (382)
                      ..|.+...++.+++|+++|+++|.+|++.++++.++
T Consensus       207 ~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~  242 (502)
T 3odu_A          207 VVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSN  242 (502)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            346666777888999999999999999999885443

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=95.29  E-value=0.001  Score=44.39  Aligned_cols=29  Identities=17%  Similarity=0.363  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16861         43 IKGMLMCFIIITAILGNLLVIISVIKHRK   71 (382)
Q Consensus        43 ~~~~~~~~i~i~gi~gN~~vl~vi~~~~~   71 (382)
                      +..++|.+++++|++||+++++++.++|.
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~   58 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKG   58 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecc
Confidence            66788999999999999999999988765

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=95.08  E-value=0.42  Score=46.19  Aligned_cols=70  Identities=24%  Similarity=0.466  Sum_probs=47.1

Q ss_pred             HHHHHhhhhcccccccccccccccCCCCcccccccCCceeeEe--ecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Q psy16861        232 LLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFV--VNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQ  309 (382)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~  309 (382)
                      .+.+..+|+.+++.+++|.+ .|....+.        ..|...  ....++.+..++.+++|+.+|+++|.+|++.++++
T Consensus       179 ~~~i~~~W~~s~~~~~~~~~-~~~~~~~~--------~~C~~~~~~~~~~~~~~~~~~~~lPl~ii~~~Y~~I~~~l~~~  249 (520)
T 3v2y_A          179 FLLISACWVISLILGGLPIM-GWNCISAL--------SSCSTVLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTR  249 (520)
T ss_dssp             HHHHHHHHHHHHHHHHTTTT-TCBCTTCG--------GGBCSSSTTBBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-eeccccCC--------CcccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34578899999999988875 44433211        123111  11223334455669999999999999999999987


Q ss_pred             H
Q psy16861        310 R  310 (382)
Q Consensus       310 ~  310 (382)
                      .
T Consensus       250 ~  250 (520)
T 3v2y_A          250 N  250 (520)
T ss_dssp             H
T ss_pred             h
Confidence            6

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=94.87  E-value=0.085  Score=49.72  Aligned_cols=76  Identities=18%  Similarity=0.461  Sum_probs=47.6

Q ss_pred             HHHHHhhhhcccccccccccccccCCCCcccccccCCcee--eEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Q psy16861        232 LLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVC--IFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQ  309 (382)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~  309 (382)
                      .+.+..+|+.+++.+.|..  .|.....+...  .....|  .......|.++..++.+++|+++|+++|.+|++.++++
T Consensus       126 ~~~i~~~W~~~~~~~~p~~--~~~~~~~~~~~--~~~~~C~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~  201 (452)
T 3rze_A          126 SATILGAWFLSFLWVIPIL--GWNHFMQQTSV--RREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQH  201 (452)
T ss_dssp             HHHHHHHHHHHGGGHHHHH--CCCC---------CCSSSSCCSCTTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHhccccccc--CCCCeecCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3457788999998877633  23222221111  111222  11334457777788889999999999999999999875


Q ss_pred             HH
Q psy16861        310 RI  311 (382)
Q Consensus       310 ~~  311 (382)
                      .+
T Consensus       202 ~~  203 (452)
T 3rze_A          202 CN  203 (452)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=94.86  E-value=0.089  Score=50.11  Aligned_cols=75  Identities=13%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             HHHHHhhhhcccccccccccccccCCCCcccccccCCceeeE--------eecchhhhhhhhhhhhHhHHHHHHHHHHHH
Q psy16861        232 LLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF--------VVNVYYALISSSISFWIPGFVMVTMYYRIY  303 (382)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~  303 (382)
                      .+.+..+|+.+++.++++.............     ...|..        .....|.++..++.+++|+++|+++|.+|+
T Consensus       138 ~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~-----~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~  212 (484)
T 3vw7_A          138 SFTCLAIWALAIAGVVPLLLKEQTIQVPGLG-----ITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSII  212 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCEEEETTTT-----EEEESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCCCC-----CceeeccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3557889999999888777644332111111     112211        111225566678889999999999999999


Q ss_pred             HHHHHhHH
Q psy16861        304 KEAVRQRI  311 (382)
Q Consensus       304 ~~~~~~~~  311 (382)
                      +.++++.+
T Consensus       213 ~~l~~~~~  220 (484)
T 3vw7_A          213 RCLSSSAN  220 (484)
T ss_dssp             HHTTSCCC
T ss_pred             HHHhHhhH
Confidence            99988654

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=94.81  E-value=0.13  Score=48.87  Aligned_cols=81  Identities=23%  Similarity=0.409  Sum_probs=50.0

Q ss_pred             HHHHHhhhhcccccccccccccccCCCCcccc---cccCCc---ee---eEeecchhhhhhhhhhhhHhHHHHHHHHHHH
Q psy16861        232 LLMLSNVWILPGIISFTPIMLGWYTTPDHKQY---RKHHPN---VC---IFVVNVYYALISSSISFWIPGFVMVTMYYRI  302 (382)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~---~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I  302 (382)
                      .+.+..+|+.+++..+++.+ .|.........   ...+..   .|   .......+..+..++.+++|+++|+++|.+|
T Consensus       137 ~~~i~~~W~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I  215 (488)
T 3eml_A          137 KGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRI  215 (488)
T ss_dssp             HHHHHHHHHHHHHHHTTGGG-TCCSSCC-------CCSSCTTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccccccccccccccccccccccceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34578899999999988875 34332222111   011110   11   1112234556667788899999999999999


Q ss_pred             HHHHHHhHHHh
Q psy16861        303 YKEAVRQRIAL  313 (382)
Q Consensus       303 ~~~~~~~~~~~  313 (382)
                      ++.++++.++.
T Consensus       216 ~~~l~~~~~~~  226 (488)
T 3eml_A          216 FLAARRQLNIF  226 (488)
T ss_dssp             HHHHTCCCCHH
T ss_pred             HHHHHHHHhHH
Confidence            99998865443

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=94.80  E-value=0.07  Score=50.43  Aligned_cols=80  Identities=10%  Similarity=0.071  Sum_probs=49.6

Q ss_pred             HHHHHhhhhcccccccccccccccCCCCcccccccCCceeeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q psy16861        232 LLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRI  311 (382)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~  311 (382)
                      ...+..+|+.+++..+++..........+..................|.+...++.+++|+++|+++|.+|++.++++.+
T Consensus       134 ~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~  213 (464)
T 4dkl_A          134 KIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRN  213 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSBCCEEETTEEECCBCCSSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred             HHhHHHHHHHHHHHHHHHHHheeecccCCCceEEeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34578889999999988776443322221111000000000011334667777788999999999999999999887443

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=94.68  E-value=0.15  Score=48.27  Aligned_cols=76  Identities=16%  Similarity=0.352  Sum_probs=50.5

Q ss_pred             HHHHhhhhcccccccccccccccCCCCcccccccCCceeeE--eecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhH
Q psy16861        233 LMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF--VVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQR  310 (382)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~  310 (382)
                      ..+..+|+.+++.+.++............    .....|..  .....|.++..++.+++|+.+|+++|++|++.++++.
T Consensus       142 ~~i~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~C~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~  217 (467)
T 3uon_A          142 MMIAAAWVLSFILWAPAILFWQFIVGVRT----VEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRI  217 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCC----CCSSCCCCGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccC----CCCCcceeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55788999999998887654221111110    11122321  2344677778888899999999999999999999865


Q ss_pred             HH
Q psy16861        311 IA  312 (382)
Q Consensus       311 ~~  312 (382)
                      ++
T Consensus       218 ~~  219 (467)
T 3uon_A          218 NI  219 (467)
T ss_dssp             CH
T ss_pred             hH
Confidence            43

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=92.74  E-value=1  Score=42.62  Aligned_cols=69  Identities=36%  Similarity=0.574  Sum_probs=48.9

Q ss_pred             HHHHhhhhcccccccccccccccCCCCcccccccCCceeeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q psy16861        233 LMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRI  311 (382)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~  311 (382)
                      +.+..+|+.+++...++.+. +.....        ...|... ...+.++..++.+++|+.+++++|.+|++.++++.+
T Consensus       161 ~~i~~~W~~~~~~~~~~~~~-~~~~~~--------~~~C~~~-~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~  229 (481)
T 3pbl_A          161 LMITAVWVLAFAVSCPLLFG-FNTTGD--------PTVCSIS-NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRR  229 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-TCCCSS--------TTCCSCC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhe-ecccCC--------CCccccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45778899999998877653 332211        1223322 334677778888999999999999999999987543

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=91.41  E-value=1.1  Score=40.25  Aligned_cols=72  Identities=14%  Similarity=0.218  Sum_probs=44.4

Q ss_pred             HHHhhhhcccccccccccccccCCCCcccccccCCceeeE--------eecchhhhhhhhhhhhHhHHHHHHHHHHHHHH
Q psy16861        234 MLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF--------VVNVYYALISSSISFWIPGFVMVTMYYRIYKE  305 (382)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~  305 (382)
                      .+..+|+.+.+.+.++... |.....+.     ....|..        .....|......+.+++|+.++.++|.+|++.
T Consensus       157 ~i~~~W~~~~~~~~~~~~~-~~~~~~~~-----~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~  230 (349)
T 1u19_A          157 GVAFTWVMALACAAPPLVG-WSRYIPEG-----MQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFT  230 (349)
T ss_dssp             HHHHHHHHHHHHHSGGGTT-SSCCEEET-----TTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHh-eeeeeccC-----CceeecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677777777776642 32221111     1122221        12345666677778899999999999999988


Q ss_pred             HHHhHH
Q psy16861        306 AVRQRI  311 (382)
Q Consensus       306 ~~~~~~  311 (382)
                      ++++.+
T Consensus       231 l~~~~~  236 (349)
T 1u19_A          231 VKEAAA  236 (349)
T ss_dssp             SCSCCC
T ss_pred             HHHhhh
Confidence            876543

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=88.77  E-value=2.5  Score=38.06  Aligned_cols=33  Identities=12%  Similarity=0.201  Sum_probs=27.3

Q ss_pred             chhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Q psy16861        277 VYYALISSSISFWIPGFVMVTMYYRIYKEAVRQ  309 (382)
Q Consensus       277 ~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~  309 (382)
                      ..|.+...++.+++|+.++.++|.+|++.++++
T Consensus       194 ~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~  226 (364)
T 2ks9_A          194 KVYHICVTVLIYFLPLLVIGYAYTVVGITLWAS  226 (364)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356666777888999999999999999888654

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=85.60  E-value=0.045  Score=32.56  Aligned_cols=24  Identities=8%  Similarity=0.169  Sum_probs=19.6

Q ss_pred             CCCCCCccceeeeccccccchhcc
Q psy16861        339 DTPQSTPVTRNVRTHSVTLNAKKK  362 (382)
Q Consensus       339 ~~~~~np~~y~~~~~~~~~~~~~~  362 (382)
                      .++..||++|+..+++++++.++.
T Consensus        12 ~ns~lNPiIY~~~~~~fr~~~~~~   35 (40)
T 2koe_A           12 LNSTVNPIIYALRSKDLRHAFRSM   35 (40)
T ss_dssp             HHHHSSTTTTBTTBHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHH
Confidence            467899999999999888776654

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=83.75  E-value=0.2  Score=44.29  Aligned_cols=75  Identities=13%  Similarity=0.120  Sum_probs=44.3

Q ss_pred             HHhhhhcccccccccccccccCCCCcccccccCCce-eeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Q psy16861        235 LSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNV-CIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQ  309 (382)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~  309 (382)
                      +..+|+.+.+.+.|+.........+........... ........+.+....+.+.+|+.++..+|.++.+.++++
T Consensus       129 ~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~  204 (296)
T 2lnl_A          129 CLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKA  204 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCSCCSCCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred             ehHHHHHHHHHhcchhhcceeecCCCCCceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677777777666554443333222211111111 111233456677778888999999999999998776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	382
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	1e-16

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.1 bits (191), Expect = 1e-16
 Identities = 40/289 (13%), Positives = 90/289 (31%), Gaps = 22/289 (7%)

Query: 13  YNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKL 72
           + + +++      S F          + F +    M  +I+     N L +   ++H+KL
Sbjct: 9   FYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL 68

Query: 73  RIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHL 132
           R   NY +++LA ADL +           SL   + FG   C++   F       ++  L
Sbjct: 69  RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 128

Query: 133 CCISVDRYYAIVKPLQYPIIMNQNTV-LLMLSNVWILPGIISFTPIMLGWYTTPDHKQYR 191
             ++++RY  + KP+        + +  +  + V  L            +          
Sbjct: 129 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG 188

Query: 192 KHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIM 251
             +        N  + +    + F IP  V+                        +  ++
Sbjct: 189 IDYYTPHEETNNESFVIYMFVVHFIIPLIVI---------------------FFCYGQLV 227

Query: 252 LGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMVTMYY 300
                    +Q           V  +   ++ + +  W+P   +    +
Sbjct: 228 FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF 276

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	382
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	85.7

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.7e-29  Score=234.14  Aligned_cols=293  Identities=15%  Similarity=0.179  Sum_probs=206.8

Q ss_pred             CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhHhHHHHHHHhcCccccc
Q psy16861         31 NSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG  110 (382)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~~~~~~p~~~~~~~~~~~~~~  110 (382)
                      .+....+.+...+.++++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++...|..+.....+.|..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~  106 (348)
T d1u19a_          27 PQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFG  106 (348)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTH
T ss_pred             CccccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccC
Confidence            34444455567788899999999999999999999999999999999999999999999999989998988888889999


Q ss_pred             ccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhhHHhHHHHHHHHhhHhhcccccC-CCcc
Q psy16861        111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTP-DHKQ  189 (382)
Q Consensus       111 ~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~-~~~~  189 (382)
                      ...|+...++...+..+++++++++++|||.+|++|++|... ++++....+.++|.+++++..++.+....... ....
T Consensus       107 ~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (348)
T d1u19a_         107 PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQC  185 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTT
T ss_pred             chhhhhhhhccccceeeecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheecccccccceeccCCccc
Confidence            999999999999999999999999999999999999998765 66777788888899999988887554222211 1222


Q ss_pred             ccc-CCCcccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCcccccccCC
Q psy16861        190 YRK-HHPNVCIFVVNVYYALISSSISFWIPGFVMVTMLVVNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHP  268 (382)
Q Consensus       190 ~~~-~~~~~c~~~~~~~~~~~~~~~~~~~Pl~~i~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (382)
                      .|. .............+......+.+++|+++++++|..+.+++                     .+...+.+......
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~---------------------~~~~~~~~~~~~~~  244 (348)
T d1u19a_         186 SCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV---------------------KEAAAQQQESATTQ  244 (348)
T ss_dssp             EEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSS---------------------CSCCCSSCSSSHHH
T ss_pred             ccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------cccccccchhhhhH
Confidence            222 12222223345667788888889999999999986654222                     11111100000000


Q ss_pred             ceeeEeecchhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhHHHhhccCCCccccccccCCCCCcccccCCCCCCCccce
Q psy16861        269 NVCIFVVNVYYALISSSISFWIPGFVMVTMYYRIYKEAVRQRIALSRTSSNIVSPVIQSTSEGSAVVTVSDTPQSTPVTR  348 (382)
Q Consensus       269 ~~~~~~~~~~~~i~~~~~~~~~P~~ii~~~y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~y  348 (382)
                      .......+....++..+++||+|+.++.+....       +      .....     .+........-...++..||++|
T Consensus       245 ~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~-------~------~~~~~-----~~~~~~~~~~l~~~ns~iNPiIY  306 (348)
T d1u19a_         245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFT-------H------QGSDF-----GPIFMTIPAFFAKTSAVYNPVIY  306 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------T------TTSCC-----CHHHHHHHHHHGGGGGTHHHHHH
T ss_pred             HHHhhHhheEEEeehHHHHHhhHHHhhhheeec-------c------CCccc-----cHHHHHHHHHHHHHHHHHHHHHH
Confidence            011123455777888899999998776543111       0      00000     00000011122357789999999


Q ss_pred             eeeccccccchhccc
Q psy16861        349 NVRTHSVTLNAKKKK  363 (382)
Q Consensus       349 ~~~~~~~~~~~~~~~  363 (382)
                      ...+++++++.++.-
T Consensus       307 ~~~~~~fR~~~~~~l  321 (348)
T d1u19a_         307 IMMNKQFRNCMVTTL  321 (348)
T ss_dssp             HHTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHh
Confidence            999999998877543

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.70  E-value=2.3  Score=35.77  Aligned_cols=59  Identities=10%  Similarity=0.136  Sum_probs=36.7

Q ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q psy16861         30 TNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLV   90 (382)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~i~i~gi~gN~~vl~vi~~~~~l~~~~~~~i~nLai~Dll~   90 (382)
                      ..+.+.....+.....++..+..+++++|=..-++++.---+.++-.+  ..|.-+.++..
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~--~~~~~l~nLai   81 (348)
T d1u19a_          23 PFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRT--PLNYILLNLAV   81 (348)
T ss_dssp             TTTSCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHH
T ss_pred             CCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCC--HhHHHHHHHHH
Confidence            345666666677777777878888888887777777766555443333  23444444443