Psyllid ID: psy16896

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---

MATQRTRLNTVKPKNQRRLLKEPDCDLTLTVYKKHDICARIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYKHKADVEAKKATSEPISNHSLLLDEMKSIIKKHFYQKWNTVWTSINPNENKLRRIKSSITPWKTSSQKARLDEVCLMRMRIGHTKITKWNATRKCLVFKIFQINSFCVPWKTSSQKARLDEVCLMRLRIGHTKITHSHLFKREERPECDTCHEPVTVEHLLLHCNKLRFRPPSFLGNSLSNILSDNPDSISRW

ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEEcccccccHHHHHHcccccccHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHHccccccccccc

ccccEEEEccccccccccEcccccccEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHccccccHHHHHHHHHHHHcccccEEEEccccHcHHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHEEHHHHHHcccccHHHHHHHHHHHHcHHHHccccccccccccccccccEEEEEEEEccccHHHHHHHcccccccccccccccEEEEEEEEccHHHHHHHHHHccccHHHHcccccHHcccc

matqrtrlntvkpknqrrllkepdcdltltvykkhDICARIIQDRFQEILHEKYEDHLKiytdgskdetgvgcaltipqlneTKRFALNKHSSVFHAELFSILQSLNhvkelntrKILIISDSLSSFQAIsnlhhpnplvKKIHEEYSnsqanikflwcpshvdslssfqaisnlhhpnplVKKIQEEYSNSqanikflwcpshvgisgneradVEAKKATKMEYRMDQYKHKADVEakkatsepisnhsLLLDEMKSIIKKHFYQKWNTVWtsinpnenklRRIKssitpwktssqkaRLDEVCLMRMRightkitkwnatrKCLVFKIFQINsfcvpwktssqkarlDEVCLMRLRightkithshlfkreerpecdtchepvtVEHLLLHCnklrfrppsflgnslsnilsdnpdsisrw

matqrtrlntvkpknqrrllkepdcdltltvykkhdiCARIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYKHKAdveakkatsepisnhsllLDEMKSIIKKHFYQKWNTvwtsinpnenklrrikssitpwktssqkarldeVCLMRMRIghtkitkwnatrKCLVFKIFQINsfcvpwktssqkarLDEVCLMRLRIGhtkithshlfkreerpecdTCHEPVTVEHLLLHCNKLRFrppsflgnslsnilsdnpdsisrw

**********************PDCDLTLTVYKKHDICARIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGIS******************************************LLLDEMKSIIKKHFYQKWNTVWTSINPNENKLRRIKSSITPWKT***KARLDEVCLMRMRIGHTKITKWNATRKCLVFKIFQINSFCVPWKTSSQKARLDEVCLMRLRIGHTKITHSHLFKREERPECDTCHEPVTVEHLLLHCNKLRFRPPSFLG*****************

*********TVKPKNQRRLLKEPDCDLTLTVYK***I**RIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYKHKADVEAKKATSEPISNHSLLLDEMKSIIKKHFYQKWNTVWTSINPNENKLRRIKSSITPWKTSSQKARLDEVCLMRMRIGHTKITKWNATRKCLVFKIFQINSFCVPWKTSSQKARLDEVCLMRLRIGHTKITHSHLFKREERPECDTCHEPVTVEHLLLHCNKLRFRPPSFLGNSLSNIL*DN*******

MATQRTRLNTVKPKNQRRLLKEPDCDLTLTVYKKHDICARIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYK*************PISNHSLLLDEMKSIIKKHFYQKWNTVWTSINPNENKLRRIKSSITPWKTSSQKARLDEVCLMRMRIGHTKITKWNATRKCLVFKIFQINSFCVPWKTSSQKARLDEVCLMRLRIGHTKITHSHLFKREERPECDTCHEPVTVEHLLLHCNKLRFRPPSFLGNSLSNILSDNPDSISRW

***QRTRLNTVKPKNQRRLLKEPDCDLTLTVYKKHDICARIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYKHKADVEAKKATSEPISNHSLLLDEMKSIIKKHFYQKWNTVWTSINPNENKLRRIKSSITPWKTSSQKARLDEVCLMRMRIGHTKITKWNATRKCLVFKIFQINSFCVPWKTSSQKARLDEVCLMRLRIGHTKITHSHLFKREERPECDTCHEPVTVEHLLLHCNKLRFRPPSFLGNSLSNILSDNPD*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		423
125901787		1222	pol-like protein [Biomphalaria glabrata]	0.628	0.217	0.277	5e-25
443693558		502	hypothetical protein CAPTEDRAFT_189741,	0.612	0.515	0.256	2e-18
443695973		261	hypothetical protein CAPTEDRAFT_23017, p	0.583	0.946	0.270	7e-18
443721618		471	hypothetical protein CAPTEDRAFT_200496,	0.591	0.530	0.237	9e-18
443712830		397	hypothetical protein CAPTEDRAFT_202466 [	0.600	0.639	0.259	1e-16
427791807		1212	Putative tick transposon, partial [Rhipi	0.600	0.209	0.241	3e-16
427791321		1210	Putative tick transposon, partial [Rhipi	0.600	0.209	0.241	3e-16
443713753		266	hypothetical protein CAPTEDRAFT_215116 [	0.553	0.879	0.265	5e-16
427798889		1199	Putative tick transposon, partial [Rhipi	0.612	0.216	0.261	1e-15
443710566		377	hypothetical protein CAPTEDRAFT_186063 [	0.505	0.567	0.291	7e-15

>gi\|125901787\|gb\|ABN58714.1\| pol-like protein [Biomphalaria glabrata]	Back alignment and taxonomy information

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 153/385 (39%), Gaps = 119/385 (30%)

Query: 13   PKNQRRLLKEPDCDLTLTVYKKHDICARIIQDRFQEILHEKYEDHLKIYTDGSKDETGVG 72
            P+N   L+ +P  +L+L  +KK +    I+Q  F+E L E Y D   IYTDGSK E  V 
Sbjct: 913  PQNPPWLMNKPKLNLSLLNFKKENTDPSILQVHFRE-LQESYGDCGTIYTDGSKMEGKVA 971

Query: 73   CALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISN 132
            CA +    N+T    L    S+F AEL +IL +L  VK     K +I SD          
Sbjct: 972  CACSF--RNKTISRRLPDGCSIFTAELHAILLALMAVKASERSKFIICSD---------- 1019

Query: 133  LHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKK---IQEEY 189
                                            S S+ QA+  +    PLV K   + +  
Sbjct: 1020 --------------------------------SKSALQALGRMKTDIPLVHKSLKLLDLI 1047

Query: 190  SNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYKHKADVEAKKATSEPISNH 249
            +  + ++ F+W PSHVGI GNE                      AD EAK+A +  +S  
Sbjct: 1048 TADRRDVTFIWVPSHVGIEGNE---------------------AADREAKRALNHAVSGT 1086

Query: 250  SLLLDEMKSIIKKHFYQKWNTVWTSINPNENKLRRIKSSITPWKTSSQKARLDEVCLMRM 309
             +   +++  I    Y++W   W +     +KLR+I + +                    
Sbjct: 1087 QIPYSDLRQSIASATYREWQNRWEA--ETHSKLRQIVADV-------------------- 1124

Query: 310  RIGHTKITKWNATRKCLVFKIFQINSFCVPWKTSSQKARLDEVCLMRLRIGHTKITHSHL 369
                    +W  T K L                     R     + RLRIGHT ITHS +
Sbjct: 1125 --------RWRPTSKGLT--------------------RRGSTTMSRLRIGHTYITHSFV 1156

Query: 370  FKREERPECDTCHEPVTVEHLLLHC 394
             KREE P C+ C   +TVEH+L+ C
Sbjct: 1157 LKREEPPLCEYCDSRLTVEHILVDC 1181

Source: Biomphalaria glabrata

Species: Biomphalaria glabrata

Genus: Biomphalaria

Family: Planorbidae

Order:

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi\|443693558\|gb\|ELT94903.1\| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]	Back alignment and taxonomy information

>gi\|443695973\|gb\|ELT96755.1\| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]	Back alignment and taxonomy information

>gi\|443721618\|gb\|ELU10867.1\| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]	Back alignment and taxonomy information

>gi\|443712830\|gb\|ELU05953.1\| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]	Back alignment and taxonomy information

>gi\|427791807\|gb\|JAA61355.1\| Putative tick transposon, partial [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|427791321\|gb\|JAA61112.1\| Putative tick transposon, partial [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|443713753\|gb\|ELU06453.1\| hypothetical protein CAPTEDRAFT_215116 [Capitella teleta]	Back alignment and taxonomy information

>gi\|427798889\|gb\|JAA64896.1\| Putative tick transposon, partial [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|443710566\|gb\|ELU04776.1\| hypothetical protein CAPTEDRAFT_186063 [Capitella teleta]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		423
ASPGD\|ASPL0000075333		486	AN10625 [Emericella nidulans (	0.248	0.216	0.25	2e-05

ASPGD\|ASPL0000075333 AN10625 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

 Score = 89 (36.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 28/112 (25%), Positives = 54/112 (48%)

Query:    58 LKIYTDGSKDETGVGCALTIPQ--LNETKRFALNKHSSVFHAELFSILQSLNHVKELNTR 115
             + +YTDGS     VG A   P+  ++ +        S+V+ AEL  IL +L  + +   +
Sbjct:   183 IALYTDGSGINGRVGAAAICPKYLISRSSYMGQQSESTVYVAELQGILLALVIILQRQMQ 242

Query:   116 KILIISDSLSSFQAISNLHHPNP--LVKKIHEEYSNSQA---NIKFLWCPSH 162
               +I +D+ ++ QA+ N    +   +++ I    +  +    N+ F W P+H
Sbjct:   243 HAVIFTDNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAH 294

GO:0008150 "biological_process" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004523 "ribonuclease H activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26.4	LOW CONFIDENCE prediction!
3rd Layer	3.1.26	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		423
cd09276		128	cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI dom	1e-27
pfam00075		126	pfam00075, RNase_H, RNase H	3e-10
COG0328		154	COG0328, RnhA, Ribonuclease HI [DNA replication, r	6e-07
cd06222		123	cd06222, RNase_H, RNase H is an endonuclease that	2e-06
cd09278		139	cd09278, RNase_HI_prokaryote_like, RNase HI family	0.001
pfam13456		88	pfam13456, RVT_3, Reverse transcriptase-like	0.002
cd09280		150	cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase	0.002
cd09273		135	cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase	0.003

>gnl\|CDD\|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse transcriptases	Back alignment and domain information

 Score =  106 bits (266), Expect = 1e-27
 Identities = 51/166 (30%), Positives = 69/166 (41%), Gaps = 42/166 (25%)

Query: 60  IYTDGSKDETGVGCALTIPQLNETKR-FALNKHSSVFHAELFSILQSLNHVKEL--NTRK 116
           IYTDGSK E   G    I +     R + L  + SVF AEL +IL++L          RK
Sbjct: 2   IYTDGSKLEGRTGAGFAIVRKGTISRSYKLGPYCSVFDAELLAILEALQLALREGRRARK 61

Query: 117 ILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLH 176
           I I SDS ++ +A+ +    +PLV +I                          +AI  L 
Sbjct: 62  ITIFSDSQAALKALRSPRSSSPLVLRIR-------------------------KAIRELA 96

Query: 177 HPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATK 222
           +                  ++  W P H GI GNERAD  AK+A K
Sbjct: 97  NHG--------------VKVRLHWVPGHSGIEGNERADRLAKEAAK 128

Ribonuclease H (RNase H) is classified into two families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). Ribonuclease HI (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as an adjunct domain to the reverse transcriptase gene in retroviruses, long-term repeat (LTR)-bearing retrotransposons and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD), are unvaried across all RNase H domains. The position of the RNase domain of non-LTR and LTR transposons is at the carboxyl terminal of the reverse transcriptase (RT) domain and their RNase domains group together, indicating a common evolutionary origin. Many non-LTR transposons have lost the RNase domain because their activity is at the nucleus and cellular RNase may suffice; however LTR retotransposons always encode their own RNase domain because it requires RNase activity in RNA-protein particles in the cytoplasm. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. Length = 128

>gnl\|CDD\|215695 pfam00075, RNase_H, RNase H	Back alignment and domain information

>gnl\|CDD\|223405 COG0328, RnhA, Ribonuclease HI [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner	Back alignment and domain information

>gnl\|CDD\|187702 cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	Back alignment and domain information

>gnl\|CDD\|205634 pfam13456, RVT_3, Reverse transcriptase-like	Back alignment and domain information

>gnl\|CDD\|187704 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase H is longer and more complex than their prokaryotic counterparts and unlike prokaryote, RNase H are essential in higher eukaryote	Back alignment and domain information

>gnl\|CDD\|187697 cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase HI in long-term repeat retroelements	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		423
COG0328		154	RnhA Ribonuclease HI [DNA replication, recombinati	99.92
PRK08719		147	ribonuclease H; Reviewed	99.92
PRK06548		161	ribonuclease H; Provisional	99.91
PRK00203		150	rnhA ribonuclease H; Reviewed	99.9
PF00075		132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	99.87
KOG3752\|consensus		371		99.79
cd06222		130	RnaseH RNase H (RNase HI) is an endonuclease that	99.76
PRK13907		128	rnhA ribonuclease H; Provisional	99.71
PRK07708		219	hypothetical protein; Validated	99.64
PRK07238		372	bifunctional RNase H/acid phosphatase; Provisional	99.49
PF13456		87	RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH	99.08
PF13966		86	zf-RVT: zinc-binding in reverse transcriptase	95.16
PF05380		159	Peptidase_A17: Pao retrotransposon peptidase ; Int	85.12
COG3341		225	Predicted double-stranded RNA/RNA-DNA hybrid bindi	81.95

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]	Back alignment and domain information

Probab=99.92  E-value=1.9e-24  Score=192.71  Aligned_cols=143  Identities=21%  Similarity=0.278  Sum_probs=114.9

Q ss_pred             CcEEEEEcCCcCC--CCceEEEEEecCCeEEEEecC-CCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHHhC
Q psy16896         56 DHLKIYTDGSKDE--TGVGCALTIPQLNETKRFALN-KHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISN  132 (423)
Q Consensus        56 ~~i~IyTDGS~~~--~~~G~g~vi~~~~~~~~~~l~-~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l~~  132 (423)
                      ..+.|||||||..  +..|+|+|+..+...+.++.+ ..+||++||+.|++.||+++.+.+...|.|+|||++|+++|+.
T Consensus         2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~~   81 (154)
T COG0328           2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEGRTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGITR   81 (154)
T ss_pred             CceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeeecccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHH
Confidence            4589999999983  349999998865544433322 3899999999999999999998888999999999999999984


Q ss_pred             CCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCCcCCHH
Q psy16896        133 LHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNER  212 (423)
Q Consensus       133 ~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi~GNe~  212 (423)
                      +.     ..|..++|+++                     =+.++++.+|++++.+++ .....|.+.|||||+|.++||+
T Consensus        82 w~-----~~w~~~~w~~~---------------------~~~pvkn~dl~~~~~~~~-~~~~~v~~~WVkgH~g~~~Ner  134 (154)
T COG0328          82 WI-----VKWKKNGWKTA---------------------DKKPVKNKDLWEELDELL-KRHELVFWEWVKGHAGHPENER  134 (154)
T ss_pred             HH-----hhccccCcccc---------------------ccCccccHHHHHHHHHHH-hhCCeEEEEEeeCCCCChHHHH
Confidence            32     24454444321                     256789999999988776 3345899999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q psy16896        213 ADVEAKKATKMEY  225 (423)
Q Consensus       213 AD~lAk~A~~~~~  225 (423)
                      ||+||+.|++...
T Consensus       135 aD~LA~~~~~~~~  147 (154)
T COG0328         135 ADQLAREAARAAK  147 (154)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999998774

>PRK08719 ribonuclease H; Reviewed	Back alignment and domain information

>PRK06548 ribonuclease H; Provisional	Back alignment and domain information

>PRK00203 rnhA ribonuclease H; Reviewed	Back alignment and domain information

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site	Back alignment and domain information

>KOG3752\|consensus	Back alignment and domain information

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner	Back alignment and domain information

>PRK13907 rnhA ribonuclease H; Provisional	Back alignment and domain information

>PRK07708 hypothetical protein; Validated	Back alignment and domain information

>PRK07238 bifunctional RNase H/acid phosphatase; Provisional	Back alignment and domain information

>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B	Back alignment and domain information

>PF13966 zf-RVT: zinc-binding in reverse transcriptase	Back alignment and domain information

>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family	Back alignment and domain information

>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		423
2kq2_A		147	Ribonuclease H-related protein; PSI, NESG, protein	1e-08
3p1g_A		165	Xenotropic murine leukemia virus-related virus (X	2e-05

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Length = 147	Back alignment and structure

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 25/185 (13%), Positives = 46/185 (24%), Gaps = 49/185 (26%)

Query: 55  EDHLKIYTDGSKDET--GVGCALTIPQLNETKRFAL-----NKHSSVFHAELFSILQSLN 107
                +YTDGS          A         +   +              E+ + L ++ 
Sbjct: 4   RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVK 63

Query: 108 HVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLS 167
              +L   KI I+ D       I+                   +A               
Sbjct: 64  KASQLGV-KIRILHDY----AGIAFWATGEW------------KAK-------------- 92

Query: 168 SFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRM 227
                      N   +   +  +  +    F    +H G   N+  D++AK A  +    
Sbjct: 93  -----------NEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSALGIRDLE 141

Query: 228 DQYKH 232
             + H
Sbjct: 142 HHHHH 146

PyMOL of 2kq2

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A Length = 165	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		423
2qkb_A		154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	99.93
3h08_A		146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	99.93
3qio_A		150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	99.92
1jl1_A		155	Ribonuclease HI; RNAse HI, protein stability, ther	99.91
2e4l_A		158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	99.91
2lsn_A		165	Reverse transcriptase; RNAse H, viral protein; NMR	99.9
3p1g_A		165	Xenotropic murine leukemia virus-related virus (X	99.89
1ril_A		166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	99.89
2kq2_A		147	Ribonuclease H-related protein; PSI, NESG, protein	99.88
3hst_B		141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	99.82
3u3g_D		140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	99.81
2ehg_A		149	Ribonuclease HI; RNAse HI, hyperthermophilic archa	99.8
1mu2_A		555	HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym	99.77
2zd1_A		557	Reverse transcriptase/ribonuclease H; P51/P66, het	99.76
1zbf_A		142	Ribonuclease H-related protein; RNAse H, RNA/DNA h	99.47
4htu_A		134	Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine,	99.29
1rw3_A		455	POL polyprotein; RNA and DNA dependent DNA polymer	86.07

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*	Back alignment and structure

Probab=99.93  E-value=6.9e-26  Score=202.14  Aligned_cols=143  Identities=20%  Similarity=0.292  Sum_probs=114.3

Q ss_pred             cCCcEEEEEcCCcCCCC-----ceEEEEEecCCe-EEEEecCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHH
Q psy16896         54 YEDHLKIYTDGSKDETG-----VGCALTIPQLNE-TKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSF  127 (423)
Q Consensus        54 ~~~~i~IyTDGS~~~~~-----~G~g~vi~~~~~-~~~~~l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai  127 (423)
                      ..+.++||||||+..++     +|+|+|+..+.. ..+..++..+|++.|||.|++.||+.+.+.+..+|.|+|||++++
T Consensus         4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi   83 (154)
T 2qkb_A            4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTI   83 (154)
T ss_dssp             ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH
T ss_pred             CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHH
Confidence            35789999999997432     789998765432 355567667899999999999999999987789999999999999


Q ss_pred             HHHhCCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCC
Q psy16896        128 QAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGI  207 (423)
Q Consensus       128 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi  207 (423)
                      +.|..+     +..|..++|+++.                     +..+.+.+|+++|.+++.  +..|.|.|||||+|+
T Consensus        84 ~~i~~~-----~~~w~~~~w~~~~---------------------~~~~~n~~l~~~i~~l~~--~~~v~~~~V~~H~g~  135 (154)
T 2qkb_A           84 NGITNW-----VQGWKKNGWKTSA---------------------GKEVINKEDFVALERLTQ--GMDIQWMHVPGHSGF  135 (154)
T ss_dssp             HHHHTH-----HHHHHTTTSBCTT---------------------SSBCTTHHHHHHHHHHHT--TCEEEEEECCTTSSC
T ss_pred             hhhhhh-----HHHHHhccccccC---------------------CCccccHHHHHHHHHHHc--CCceEEEEccCCCCC
Confidence            999875     2356666664321                     223456678888887764  467999999999999


Q ss_pred             cCCHHHHHHHHHHhhhh
Q psy16896        208 SGNERADVEAKKATKME  224 (423)
Q Consensus       208 ~GNe~AD~lAk~A~~~~  224 (423)
                      +|||.||+|||+|+..+
T Consensus       136 ~~N~~AD~LA~~a~~~~  152 (154)
T 2qkb_A          136 IGNEEADRLAREGAKQS  152 (154)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HhHHHHHHHHHHHHHhc
Confidence            99999999999998754

PyMOL of 2qkb

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}	Back alignment and structure

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A	Back alignment and structure

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...	Back alignment and structure

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A	Back alignment and structure

>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}	Back alignment and structure

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A	Back alignment and structure

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A	Back alignment and structure

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A	Back alignment and structure

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}	Back alignment and structure

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}	Back alignment and structure

>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A	Back alignment and structure

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B	Back alignment and structure

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...	Back alignment and structure

>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*	Back alignment and structure

>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A	Back alignment and structure

>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		423
d1mu2a1		126	c.55.3.1 (A:430-555) HIV RNase H (Domain of revers	5e-05
d1rila_		147	c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermoph	1e-04
d1jl1a_		152	c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli	0.002

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Length = 126	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

 Score = 40.7 bits (94), Expect = 5e-05
 Identities = 29/162 (17%), Positives = 44/162 (27%), Gaps = 47/162 (29%)

Query: 60  IYTDGS-KDETGVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKIL 118
            YTDGS   ++  G A  +    + K   L + ++   AEL +   +L            
Sbjct: 10  FYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTDSGPKVN---- 64

Query: 119 IISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHP 178
           II DS      ++          +  E  S     I                        
Sbjct: 65  IIVDSQYVMGIVA---------SQPTESESKIVNQIIEEMIKKE---------------- 99

Query: 179 NPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKA 220
                            I   W P+H GI GN+  D    + 
Sbjct: 100 ----------------AIYVAWVPAHKGIGGNQEVDHLVSQG 125

PyMOL of d1mu2a1

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} Length = 147	Back information, alignment and structure

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Length = 152	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		423
d1rila_		147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	99.91
d1jl1a_		152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	99.91
d1mu2a1		126	HIV RNase H (Domain of reverse transcriptase) {Hum	99.89
d1s1ta1		110	HIV RNase H (Domain of reverse transcriptase) {Hum	99.72
d1zbfa1		132	BH0863-like Ribonuclease H {Bacillus halodurans [T	99.59

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=1.3e-25  Score=196.42  Aligned_cols=139  Identities=19%  Similarity=0.206  Sum_probs=106.4

Q ss_pred             cEEEEEcCCcCCC--CceEEEEEecCCeEEEEe-cCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHHhCC
Q psy16896         57 HLKIYTDGSKDET--GVGCALTIPQLNETKRFA-LNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISNL  133 (423)
Q Consensus        57 ~i~IyTDGS~~~~--~~G~g~vi~~~~~~~~~~-l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l~~~  133 (423)
                      .|+||||||+.++  .+|+|+|+...+....+. ....+|+++|||.|++.||+++..  ...+.|++||+++++++...
T Consensus         3 ~i~iytDGs~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~--~~~i~i~tds~~~~~~~~~~   80 (147)
T d1rila_           3 RVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFTEG   80 (147)
T ss_dssp             CCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS--CCEEEEECCCHHHHHHHHSS
T ss_pred             EEEEEEccCCCCCCCccEEEEEEEECCcceEEecccccccHHHHHHHHHHHHhhhccC--CceEEEecchhhhhcccccc
Confidence            5899999999854  388999887665433322 224569999999999999987654  57899999999999999875


Q ss_pred             CCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCCcCCHHH
Q psy16896        134 HHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERA  213 (423)
Q Consensus       134 ~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi~GNe~A  213 (423)
                      .    ...|..+.|.+                     ....++.+.+|++++..++  ....|.|.|||||+|++|||.|
T Consensus        81 ~----~~~~~~~~~~~---------------------~~~~~v~n~dL~~~l~~~~--~~~~v~~~wVkgHsg~~gNe~A  133 (147)
T d1rila_          81 W----LEGWRKRGWRT---------------------AEGKPVKNRDLWEALLLAM--APHRVRFHFVKGHTGHPENERV  133 (147)
T ss_dssp             H----HHHHHHTTSBC---------------------TTSSBCTTHHHHHHHHHHH--TTSEEECCCCCGGGSCTHHHHH
T ss_pred             c----hhhhhhccccc---------------------cccccchhHHHHHHHHHHh--hhcccceEEccCCCCCcchHHH
Confidence            3    12344333321                     1234567788998887765  3578999999999999999999


Q ss_pred             HHHHHHHhhhh
Q psy16896        214 DVEAKKATKME  224 (423)
Q Consensus       214 D~lAk~A~~~~  224 (423)
                      |+|||+|+.+.
T Consensus       134 D~LAk~aa~~~  144 (147)
T d1rila_         134 DREARRQAQSQ  144 (147)
T ss_dssp             HHHHHHHHTSS
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

PyMOL of d1rila_

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}	Back information, alignment and structure

>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}	Back information, alignment and structure

>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure