Psyllid ID: psy168

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKVEWWMLRNR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHEEEEEEcEEEHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MILLGTIMLgagmgfcegpimsylgevceprirgsltllsgvsgnggaLGIFFLNAITDWRTTTLISSVVPILAFAMILflpesptwliykgrmvDAEKSLRWLRGWSKKDKVMVEFEQLKVEWWMLRNR
Flexible Loop (DISEMBL)
MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLrwlrgwskkdkvmVEFEqlkvewwmlrnr
Low Complexity Region (SEG)
MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKVEWWMLRNR
Disordered region (IsUnstruct)
*ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKVEWWML***
Disordered Region (DISOPRED)
MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKV*W******
Disordered Region (DISEMBL)
MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKVEWWMLRNR
Disordered Region (DISPRO)
MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKVEWWMLRN*
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKVEWWMLRNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
A9ZSY2	502	Facilitated trehalose tra	N/A	N/A	0.946	0.245	0.358	3e-16
A9ZSY3	505	Facilitated trehalose tra	N/A	N/A	0.815	0.209	0.349	4e-15
B3MG58	866	Facilitated trehalose tra	N/A	N/A	0.815	0.122	0.339	7e-15
Q291H8	868	Facilitated trehalose tra	no	N/A	0.815	0.122	0.339	7e-15
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.815	0.121	0.339	7e-15
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.815	0.131	0.349	1e-14
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.815	0.123	0.330	2e-14
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.815	0.123	0.330	2e-14
B4J913	929	Facilitated trehalose tra	N/A	N/A	0.815	0.114	0.339	4e-14
B4KR05	863	Facilitated trehalose tra	N/A	N/A	0.815	0.122	0.339	4e-14

>sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 8/131 (6%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           MIL+G  + G  +G     +  YLGE  +P +RGSL LL  V GN G L  F       W
Sbjct: 138 MILVGRSICGFCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAW 197

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKK--------DK 112
           R   L+ + +PI+   ++  +PE+P W I KG++ +A KSL+WLRG +           K
Sbjct: 198 RNLALLGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEELDSIQK 257

Query: 113 VMVEFEQLKVE 123
           + +E E++  E
Sbjct: 258 MHIESERIATE 268

Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Apis mellifera ligustica (taxid: 7469)

>sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           M+  G ++ G  +G        Y+GE  +P +RG+L LL    GN G L  F + +  DW
Sbjct: 143 MVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDW 202

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRG 106
                  + +P+  F +++  PE+P W + K R+ +A KSLRWLRG
Sbjct: 203 SNLAFFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRG 248

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Bombyx mori (taxid: 7091)

>sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 54/106 (50%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           M+L G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct: 501 MVLAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDW 560

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRG 106
                + + +P+    ++  +PE+P W + +GR   A K+L WLRG
Sbjct: 561 SMLAFLGAALPVPFLVLMFLIPETPRWFVSRGREERARKALSWLRG 606

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila ananassae (taxid: 7217)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 54/106 (50%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           M+L G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct: 503 MVLAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDW 562

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRG 106
                + + +P+    ++  +PE+P W + +GR   A K+L WLRG
Sbjct: 563 SMLAFLGAALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLRG 608

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 54/106 (50%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           M+L G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct: 504 MVLAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDW 563

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRG 106
                + + +P+    ++  +PE+P W + +GR   A K+L WLRG
Sbjct: 564 SMLAFLGAALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLRG 609

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 56/106 (52%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           M+L+G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct: 441 MVLVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDW 500

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRG 106
                + + +PI    ++  +PE+P W + +GR   A K+L+WLRG
Sbjct: 501 SGLAFLGAALPIPFLLLMFLIPETPRWYVSRGRDDRARKALQWLRG 546

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           M+L G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F   +  +W
Sbjct: 491 MVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNW 550

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRG 106
                + + +P+    ++  +PE+P W + +GR   A K+L WLRG
Sbjct: 551 SMLAFLGAALPVPFLILMFLIPETPRWFVSRGREERARKALSWLRG 596

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           M+L G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F   +  +W
Sbjct: 491 MVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILVCFVAGSFMNW 550

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRG 106
                + + +P+    ++  +PE+P W + +GR   A K+L WLRG
Sbjct: 551 SMLAFLGAALPVPFLILMFLIPETPRWYVSRGREERARKALTWLRG 596

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|B4J913|TRET1_DROGR Facilitated trehalose transporter Tret1 OS=Drosophila grimshawi GN=Tret1 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 53/106 (50%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           M+L G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct: 564 MVLSGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFIAGTYMDW 623

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRG 106
                +   +P+    ++  +PE+P W + +GR   A K+L WLRG
Sbjct: 624 SMLAFLGGALPVPFLILMFLIPETPRWYVSRGREERARKALVWLRG 669

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila grimshawi (taxid: 7222)

>sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 53/106 (50%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           M+L G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct: 498 MVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDW 557

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRG 106
                +   +P+    ++  +PE+P W + +GR   A K+L WLRG
Sbjct: 558 SMLAFLGGTLPVPFLILMFLIPETPRWYVSRGREERARKALVWLRG 603

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila mojavensis (taxid: 7230)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
347965559	577	AGAP001236-PA [Anopheles gambiae str. PE	0.9	0.202	0.470	2e-24
157125518	570	sugar transporter [Aedes aegypti] gi|108	0.907	0.207	0.457	2e-24
170043906	566	sugar transporter [Culex quinquefasciatu	0.907	0.208	0.432	9e-23
291461573	507	sugar transporter 7 [Nilaparvata lugens]	0.869	0.222	0.451	2e-22
193669080	515	PREDICTED: facilitated trehalose transpo	0.969	0.244	0.436	3e-21
193697617	475	PREDICTED: facilitated trehalose transpo	0.892	0.244	0.422	5e-21
193688235	560	PREDICTED: facilitated trehalose transpo	0.915	0.212	0.420	7e-21
91082977	1252	PREDICTED: similar to sugar transporter	0.915	0.095	0.403	1e-20
270007037	1229	hypothetical protein TcasGA2_TC013484 [T	0.915	0.096	0.403	1e-20
328713668	502	PREDICTED: facilitated trehalose transpo	0.923	0.239	0.383	2e-20

>gi|347965559|ref|XP_321919.5| AGAP001236-PA [Anopheles gambiae str. PEST] gi|333470456|gb|EAA01784.5| AGAP001236-PA [Anopheles gambiae str. PEST]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 75/117 (64%)

Query: 5   GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTT 64
             I+LG G+GF E PI++Y+GE+C+P IRG LT  +GV+   G   ++ L  +T WRTT 
Sbjct: 158 AAILLGLGVGFMEAPIVTYVGEICQPSIRGILTSCAGVAVMLGFFMVYLLGTVTTWRTTA 217

Query: 65  LISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLK 121
            I  V+PI     I F+PE+P WL+ K R  DA KSL+WLRGW     V  EF+++K
Sbjct: 218 AICGVIPIATMIAICFVPETPMWLLSKNRADDALKSLQWLRGWVSPKAVEQEFQEMK 274

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125518|ref|XP_001654366.1| sugar transporter [Aedes aegypti] gi|108873601|gb|EAT37826.1| AAEL010219-PA [Aedes aegypti]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 75/118 (63%)

Query: 4   LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTT 63
           +  I+LG G+GF E PI++Y+GE+C+P IRG LT  +GV+   G   +F L  +T WR T
Sbjct: 152 IAAILLGLGVGFMEAPIVTYVGEICQPSIRGILTSCAGVAVMLGFFVVFLLGTVTTWRIT 211

Query: 64  TLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLK 121
             I   VP+     I F+PE+P WL+ K R  DA KSL+WLRGW   D V  EF++++
Sbjct: 212 AAICVTVPLATMIAICFVPETPMWLLSKNRKEDARKSLQWLRGWVSPDAVEKEFQEMQ 269

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043906|ref|XP_001849608.1| sugar transporter [Culex quinquefasciatus] gi|167867183|gb|EDS30566.1| sugar transporter [Culex quinquefasciatus]

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 74/118 (62%)

Query: 4   LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTT 63
           +  I+LG G+GF E PI++Y+GE+C+P IRG LT  +GV+   G   ++ L  +T WR T
Sbjct: 152 IAAILLGLGVGFMEAPIVTYVGEICQPSIRGILTSCAGVAVMLGFFMVYLLGTVTTWRIT 211

Query: 64  TLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLK 121
             I   +P+     I F+PE+P WL+ K R  DA KSL+WLRGW     V  EF++++
Sbjct: 212 AAICVSIPLATMIAICFVPETPMWLLSKDRKEDARKSLQWLRGWVSPKAVEKEFQEMQ 269

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461573|dbj|BAI83421.1| sugar transporter 7 [Nilaparvata lugens]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 73/113 (64%)

Query: 5   GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTT 64
            + ++G  +GF E P++SY+GEV EPR+RG +++L G     G L   F  A+TDWR+  
Sbjct: 128 ASTLMGMSIGFIEAPVLSYIGEVTEPRMRGPMSVLGGSFAGIGILIECFFGAMTDWRSAC 187

Query: 65  LISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEF 117
            IS+  P++AF  + F+PESP WLI  GR+ +AE++L WLRGW     V  EF
Sbjct: 188 AISATFPVMAFIALSFIPESPVWLICVGRIAEAEQALCWLRGWVHPACVRQEF 240

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193669080|ref|XP_001943832.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 75/126 (59%)

Query: 5   GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTT 64
            +  +G  +GF EGP M+Y+GE+ EP +RG L+  S      G L  F L  I  WRTT 
Sbjct: 138 ASATMGISIGFLEGPTMAYIGEISEPDVRGILSTFSSSMIVMGHLLEFVLGWIFPWRTTM 197

Query: 65  LISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKVEW 124
           L+S +VP+LA   I  +PESP WL+ KGR  +A  SLRWLRGW+  ++V  EF  L++  
Sbjct: 198 LVSCLVPVLAAVAISLIPESPVWLLTKGRRDEALSSLRWLRGWASAEEVSEEFHNLELYC 257

Query: 125 WMLRNR 130
              +N 
Sbjct: 258 QESKNE 263

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193697617|ref|XP_001943575.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 73/116 (62%)

Query: 5   GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTT 64
            T+++G  +GF E PI+SY+GE+ EPR RG++  L+  +G  G L I+ L    +WR   
Sbjct: 124 STVLMGLSIGFSEAPILSYVGEITEPRHRGTMASLATTAGMIGMLLIYILGYFFEWRIVA 183

Query: 65  LISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQL 120
           L+S++ PI    +++ +PESP WLI  G+   A+KSL WLRGW K + V  E  +L
Sbjct: 184 LLSTLCPITCICLVMLIPESPLWLIANGKNEKAKKSLCWLRGWVKPEMVKAELLEL 239

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193688235|ref|XP_001945235.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 70/119 (58%)

Query: 2   ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWR 61
           + L   + G   G  E P+++Y+ E+ EP IRG L  LS  +   G++  F L     WR
Sbjct: 170 LYLALALCGLCGGLLEAPVLTYVAEITEPHIRGVLAALSSTTVILGSISQFILGNFFHWR 229

Query: 62  TTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQL 120
              L +++VP++AF  +L +PESP WLI KGR+ +AEKSL WLRGW + D V  E   L
Sbjct: 230 KIVLFNTIVPVVAFISLLLIPESPHWLITKGRIAEAEKSLCWLRGWVQPDAVQYELSML 288

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082977|ref|XP_974017.1| PREDICTED: similar to sugar transporter [Tribolium castaneum]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)

Query: 2   ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWR 61
           I L   + G   G  E P+++Y+ E+ +P +RG L+  S ++   G L  F L    +WR
Sbjct: 126 IFLALCITGVTGGLLEAPVLTYVAEITQPHLRGMLSSTSTMAVILGVLVQFLLGTFLNWR 185

Query: 62  TTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQL 120
             TL + V PI+AF +++F+PE+P WLI K R +DA KSL WLRGW+  +++ +EF+ L
Sbjct: 186 LVTLCNCVFPIVAFVLLIFVPETPIWLISKNRYLDARKSLAWLRGWTSLNEIELEFQDL 244

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007037|gb|EFA03485.1| hypothetical protein TcasGA2_TC013484 [Tribolium castaneum]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)

Query: 2   ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWR 61
           I L   + G   G  E P+++Y+ E+ +P +RG L+  S ++   G L  F L    +WR
Sbjct: 126 IFLALCITGVTGGLLEAPVLTYVAEITQPHLRGMLSSTSTMAVILGVLVQFLLGTFLNWR 185

Query: 62  TTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQL 120
             TL + V PI+AF +++F+PE+P WLI K R +DA KSL WLRGW+  +++ +EF+ L
Sbjct: 186 LVTLCNCVFPIVAFVLLIFVPETPIWLISKNRYLDARKSLAWLRGWTSLNEIELEFQDL 244

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713668|ref|XP_001950346.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 73/120 (60%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
           M+   TI +G G+GF +GP  SY+GE+CEPR+RG +  +  ++   G L  F L+ +  W
Sbjct: 129 MLYWSTITMGMGLGFNDGPAYSYIGEICEPRLRGIMACVVNMACLIGVLSSFGLSYVFHW 188

Query: 61  RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQL 120
           +T   +S++ P++    + F+PESP WL+ KGR   A  ++ WLRGW     V  E+++L
Sbjct: 189 KTVAAVSALCPVMCLTFVAFIPESPIWLLSKGRNEKAMNAICWLRGWVDPCVVATEYQEL 248

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
FB|FBgn0051100	716	CG31100 [Drosophila melanogast	0.869	0.157	0.398	7.2e-20
UNIPROTKB|A9ZSY2	502	Tret1 "Facilitated trehalose t	0.815	0.211	0.405	7.7e-17
UNIPROTKB|A9ZSY3	505	Tret1 "Facilitated trehalose t	0.923	0.237	0.327	7.4e-16
UNIPROTKB|A5LGM7	504	Tret1 "Facilitated trehalose t	0.892	0.230	0.364	1.5e-14
UNIPROTKB|B4MYA4	872	Tret1 "Facilitated trehalose t	0.807	0.120	0.373	6.1e-14
UNIPROTKB|B0WC46	517	Tret1 "Facilitated trehalose t	0.838	0.210	0.366	6.9e-14
FB|FBgn0033644	488	Tret1-2 "Trehalose transporter	0.907	0.241	0.316	7.9e-14
UNIPROTKB|Q17NV8	806	Tret1 "Facilitated trehalose t	0.838	0.135	0.375	8.9e-14
UNIPROTKB|Q291H8	868	Tret1 "Facilitated trehalose t	0.807	0.120	0.364	1.3e-13
UNIPROTKB|B4GAP7	869	Tret1 "Facilitated trehalose t	0.807	0.120	0.364	1.3e-13

FB|FBgn0051100 CG31100 [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 45/113 (39%), Positives = 66/113 (58%)

Query:     8 MLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLIS 67
             + G G G  E P+++Y+ E+ EP+ RG L+ L       G    F L ++ DWR+   +S
Sbjct:   158 LAGLGGGLMEAPVLTYVAEITEPKYRGILSALGTTCVITGVFIQFILGSLMDWRSVAAVS 217

Query:    68 SVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQL 120
             S  P++   M+ F+PESP WLI + R  +A KSL+WLRGW  +  +  EF QL
Sbjct:   218 SAFPVITIIMLCFVPESPVWLIREQRFREAVKSLQWLRGWVPEHMIEAEFNQL 270

GO:0016021 "integral to membrane" evidence=ISS

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=ISS

GO:0015749 "monosaccharide transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)]

 Score = 215 (80.7 bits), Expect = 7.7e-17, P = 7.7e-17
 Identities = 43/106 (40%), Positives = 61/106 (57%)

Query:     1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
             MIL+G  + G  +G     +  YLGE  +P +RGSL LL  V GN G L  F       W
Sbjct:   138 MILVGRSICGFCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAW 197

Query:    61 RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRG 106
             R   L+ + +PI+   ++  +PE+P W I KG++ +A KSL+WLRG
Sbjct:   198 RNLALLGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRG 243

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)]

 Score = 206 (77.6 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 40/122 (32%), Positives = 62/122 (50%)

Query:     1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
             M+  G ++ G  +G        Y+GE  +P +RG+L LL    GN G L  F + +  DW
Sbjct:   143 MVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDW 202

Query:    61 RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQL 120
                    + +P+  F +++  PE+P W + K R+ +A KSLRWLRG  K   +  E   L
Sbjct:   203 SNLAFFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRG--KNVNIEKEMRDL 260

Query:   121 KV 122
              +
Sbjct:   261 TI 262

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)]

 Score = 194 (73.4 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 43/118 (36%), Positives = 61/118 (51%)

Query:     1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
             M+L G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      +W
Sbjct:   139 MVLAGRALSGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNW 198

Query:    61 RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFE 118
                  I S++PI    + L +PE+P W + +GR   A K+L+WLRG  KK  V  E +
Sbjct:   199 SGLAFIGSILPIPFMVLTLLIPETPRWFVTRGREERARKALQWLRG--KKADVEPELK 254

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|B4MYA4 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila willistoni (taxid:7260)]

 Score = 192 (72.6 bits), Expect = 6.1e-14, P = 6.1e-14
 Identities = 40/107 (37%), Positives = 58/107 (54%)

Query:     1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
             M+LLG  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct:   506 MVLLGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDW 565

Query:    61 RTTTLISSVVPILAFAMILFL-PESPTWLIYKGRMVDAEKSLRWLRG 106
                  + + +P+  F +++FL PE+P W + +GR   A K+L WLRG
Sbjct:   566 SMLAFLGAALPV-PFLILMFLIPETPRWYVSRGREERARKALSWLRG 611

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)]

 Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
 Identities = 41/112 (36%), Positives = 61/112 (54%)

Query:     1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
             M+L+G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct:   152 MVLVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDW 211

Query:    61 RTTTLISSVVPILAFAMILFL-PESPTWLIYKGRMVDAEKSLRWLRGWSKKD 111
                  + + +P+  F +++FL PE+P W + +GR   A K+L+WLRG  K D
Sbjct:   212 SELAFLGATLPV-PFLILMFLIPETPRWYVSRGRDDRARKALQWLRG-KKAD 261

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 38/120 (31%), Positives = 64/120 (53%)

Query:     1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
             MIL G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  +   +  +W
Sbjct:   124 MILCGRFLTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNW 183

Query:    61 RTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQL 120
                  + + +P+    +++ +PE+P W + +G+   A K+L+WLRG  K+  V  E ++L
Sbjct:   184 SMLAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRG--KEADVEPELKEL 241

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005353 "fructose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)]

 Score = 190 (71.9 bits), Expect = 8.9e-14, P = 8.9e-14
 Identities = 42/112 (37%), Positives = 61/112 (54%)

Query:     1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
             M+L+G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct:   441 MVLVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDW 500

Query:    61 RTTTLISSVVPILAFAMILFL-PESPTWLIYKGRMVDAEKSLRWLRGWSKKD 111
                  + + +PI  F +++FL PE+P W + +GR   A K+L+WLRG  K D
Sbjct:   501 SGLAFLGAALPI-PFLLLMFLIPETPRWYVSRGRDDRARKALQWLRG-KKAD 550

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|Q291H8 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 189 (71.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/107 (36%), Positives = 57/107 (53%)

Query:     1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
             M+L G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct:   503 MVLAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDW 562

Query:    61 RTTTLISSVVPILAFAMILFL-PESPTWLIYKGRMVDAEKSLRWLRG 106
                  + + +P+  F +++FL PE+P W + +GR   A K+L WLRG
Sbjct:   563 SMLAFLGAALPV-PFLILMFLIPETPRWFVSRGREEKARKALSWLRG 608

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4GAP7 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila persimilis (taxid:7234)]

 Score = 189 (71.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/107 (36%), Positives = 57/107 (53%)

Query:     1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDW 60
             M+L G  + G  +G     +  YLGE  +P +RG+L LL    GN G L  F      DW
Sbjct:   504 MVLAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDW 563

Query:    61 RTTTLISSVVPILAFAMILFL-PESPTWLIYKGRMVDAEKSLRWLRG 106
                  + + +P+  F +++FL PE+P W + +GR   A K+L WLRG
Sbjct:   564 SMLAFLGAALPV-PFLILMFLIPETPRWFVSRGREEKARKALSWLRG 609

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	130
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-14
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	5e-13
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-07
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	4e-05

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITD- 59
           M+++G +++G G+G     +  Y+ E+   ++RG+L  L  +    G L    +    + 
Sbjct: 103 MLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNK 162

Query: 60  ------WRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKV 113
                 WR    +  V  IL    +LFLPESP WL+ KG++ +A   L  LRG S  D+ 
Sbjct: 163 YSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQE 222

Query: 114 MVE 116
           + E
Sbjct: 223 IQE 225

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-- 58
           M+++G ++LG G+G     +  YL E+    +RG+LT L  ++   G L  +   +    
Sbjct: 129 MLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS 188

Query: 59  -----DWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKV 113
                 WR    +  +   L F  + FLPESP WL+ KGR+ +A KSL  LRG S +DK 
Sbjct: 189 LNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKE 248

Query: 114 MVEFEQLK 121
           +++  +L 
Sbjct: 249 LLDELELI 256

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 48  ALGIFFLN----AITDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLR 102
           +LG+  L      I DWR   L  S+   L F +  F+PESP WLI +GR+ +A K L+
Sbjct: 226 SLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQ 284

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 24/131 (18%)

Query: 7   IMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNG-----GALGIFFLNAI---- 57
           I+ G G+G        Y+ E+    IRG L     VS N      G L ++F+N      
Sbjct: 128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKL-----VSFNQFAIIFGQLVVYFVNYFIARS 182

Query: 58  --------TDWRTTTLISSVVPILAFAMILFL-PESPTWLIYKGRMVDAEKSLRWLRGWS 108
                     WR     S  +P L F M+L+  PE+P +L+ +G+   AE  LR + G +
Sbjct: 183 GDASWLNTDGWRYMFA-SEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT 241

Query: 109 KKDKVMVEFEQ 119
              + + E + 
Sbjct: 242 LATQALQEIKH 252

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
KOG0569|consensus	485		99.85
KOG0254|consensus	513		99.76
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.72
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.7
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.69
KOG0255|consensus	521		99.67
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.66
TIGR00898	505	2A0119 cation transport protein.	99.65
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.51
KOG0253|consensus	528		99.49
PRK10642	490	proline/glycine betaine transporter; Provisional	99.48
KOG2533|consensus	495		99.4
PRK09952	438	shikimate transporter; Provisional	99.38
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.35
PRK10642	490	proline/glycine betaine transporter; Provisional	99.34
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.3
TIGR00891	405	2A0112 putative sialic acid transporter.	99.29
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.29
KOG2532|consensus	466		99.25
KOG0252|consensus	538		99.23
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.14
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.12
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.11
PRK15075	434	citrate-proton symporter; Provisional	99.1
TIGR00805	633	oat sodium-independent organic anion transporter.	99.1
PRK12307	426	putative sialic acid transporter; Provisional	99.1
TIGR00893	399	2A0114 d-galactonate transporter.	99.1
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.08
TIGR00895	398	2A0115 benzoate transport.	99.08
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.08
PRK03545	390	putative arabinose transporter; Provisional	99.03
PRK11663	434	regulatory protein UhpC; Provisional	99.01
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.99
KOG1330|consensus	493		98.98
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.95
PRK03893	496	putative sialic acid transporter; Provisional	98.95
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.94
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.91
PRK10091	382	MFS transport protein AraJ; Provisional	98.9
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.89
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.86
TIGR00900	365	2A0121 H+ Antiporter protein.	98.86
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.86
PTZ00207	591	hypothetical protein; Provisional	98.81
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.8
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.79
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.78
PRK12382	392	putative transporter; Provisional	98.78
PRK11010	491	ampG muropeptide transporter; Validated	98.77
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.76
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.75
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.74
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.73
PRK05122	399	major facilitator superfamily transporter; Provisi	98.72
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.71
PRK10504	471	putative transporter; Provisional	98.69
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.67
PRK11043	401	putative transporter; Provisional	98.65
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.65
PRK10489	417	enterobactin exporter EntS; Provisional	98.65
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.64
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.63
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.62
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.62
PLN00028	476	nitrate transmembrane transporter; Provisional	98.61
PRK11902	402	ampG muropeptide transporter; Reviewed	98.59
PRK03699	394	putative transporter; Provisional	98.58
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.53
PRK09705	393	cynX putative cyanate transporter; Provisional	98.53
PRK09874	408	drug efflux system protein MdtG; Provisional	98.51
TIGR00901	356	2A0125 AmpG-related permease.	98.51
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.5
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.5
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.46
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.44
KOG2615|consensus	451		98.43
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.43
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.42
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.37
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.37
PRK10133	438	L-fucose transporter; Provisional	98.32
KOG3764|consensus	464		98.32
PRK10054	395	putative transporter; Provisional	98.3
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.29
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.25
PRK05122	399	major facilitator superfamily transporter; Provisi	98.24
PRK15011	393	sugar efflux transporter B; Provisional	98.22
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.21
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.2
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.19
KOG3626|consensus	735		98.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.18
PRK15011	393	sugar efflux transporter B; Provisional	98.15
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.13
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.12
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.12
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.07
PRK12382	392	putative transporter; Provisional	98.03
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.03
TIGR00898	505	2A0119 cation transport protein.	98.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.96
PRK03633	381	putative MFS family transporter protein; Provision	97.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.91
PRK09874	408	drug efflux system protein MdtG; Provisional	97.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.87
PRK09528	420	lacY galactoside permease; Reviewed	97.83
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.79
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.77
PRK10489	417	enterobactin exporter EntS; Provisional	97.73
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.72
PRK09952	438	shikimate transporter; Provisional	97.71
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.7
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.7
KOG2325|consensus	488		97.68
TIGR00893	399	2A0114 d-galactonate transporter.	97.66
PRK03633	381	putative MFS family transporter protein; Provision	97.64
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.62
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.48
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.46
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.46
PRK11663	434	regulatory protein UhpC; Provisional	97.45
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.36
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.35
PRK09705	393	cynX putative cyanate transporter; Provisional	97.3
PRK03545	390	putative arabinose transporter; Provisional	97.22
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.19
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.16
KOG0569|consensus	485		97.12
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.09
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.09
KOG2504|consensus	509		97.08
PRK03893	496	putative sialic acid transporter; Provisional	97.08
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.07
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.05
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.03
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.03
TIGR00891	405	2A0112 putative sialic acid transporter.	97.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	96.98
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.98
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	96.96
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.92
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.9
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.82
PRK10504	471	putative transporter; Provisional	96.81
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.79
TIGR00895	398	2A0115 benzoate transport.	96.77
TIGR00900	365	2A0121 H+ Antiporter protein.	96.76
PRK11010	491	ampG muropeptide transporter; Validated	96.76
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.7
COG0477	338	ProP Permeases of the major facilitator superfamil	96.7
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.68
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.66
PRK03699	394	putative transporter; Provisional	96.64
PRK10054	395	putative transporter; Provisional	96.64
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.6
PRK12307	426	putative sialic acid transporter; Provisional	96.59
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.57
PRK11902	402	ampG muropeptide transporter; Reviewed	96.54
PRK09528	420	lacY galactoside permease; Reviewed	96.53
PF13347	428	MFS_2: MFS/sugar transport protein	96.44
KOG0252|consensus	538		96.3
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.29
KOG2816|consensus	463		96.22
PRK09669	444	putative symporter YagG; Provisional	96.2
KOG0253|consensus	528		96.19
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.12
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.07
PRK09848	448	glucuronide transporter; Provisional	96.07
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.01
PRK10213	394	nepI ribonucleoside transporter; Reviewed	95.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	95.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.82
KOG2504|consensus	509		95.74
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	95.73
PRK11462	460	putative transporter; Provisional	95.5
KOG3762|consensus	618		95.48
PLN00028	476	nitrate transmembrane transporter; Provisional	95.47
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	95.47
PRK15075	434	citrate-proton symporter; Provisional	95.43
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	95.43
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.37
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	95.3
KOG0255|consensus	521		95.26
PRK11652	394	emrD multidrug resistance protein D; Provisional	95.21
PRK09669	444	putative symporter YagG; Provisional	95.08
PRK10429	473	melibiose:sodium symporter; Provisional	95.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	94.97
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	94.93
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	94.87
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.86
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.69
PRK10429	473	melibiose:sodium symporter; Provisional	94.55
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	94.46
KOG2532|consensus	466		94.46
KOG0254|consensus	513		94.42
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	94.29
PRK14995	495	methyl viologen resistance protein SmvA; Provision	94.16
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	94.16
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	94.11
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.89
KOG4686|consensus	459		93.72
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.64
TIGR00901	356	2A0125 AmpG-related permease.	93.6
COG2270	438	Permeases of the major facilitator superfamily [Ge	93.55
COG2211	467	MelB Na+/melibiose symporter and related transport	93.25
PTZ00207	591	hypothetical protein; Provisional	93.05
KOG2563|consensus	480		92.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	92.7
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	91.73
PRK10091	382	MFS transport protein AraJ; Provisional	91.72
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	91.68
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	91.67
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	91.57
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	91.38
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	90.83
PRK11462	460	putative transporter; Provisional	90.39
PRK11043	401	putative transporter; Provisional	89.67
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	89.67
KOG3764|consensus	464		89.62
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	89.56
PRK15403	413	multidrug efflux system protein MdtM; Provisional	89.16
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	88.48
PRK09848	448	glucuronide transporter; Provisional	87.39
KOG2615|consensus	451		87.28
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	86.78
TIGR00896	355	CynX cyanate transporter. This family of proteins	86.11
PF13347	428	MFS_2: MFS/sugar transport protein	84.1
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	83.74
PF06645	76	SPC12: Microsomal signal peptidase 12 kDa subunit	83.41
COG2211	467	MelB Na+/melibiose symporter and related transport	83.18
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	83.1
KOG3098|consensus	461		82.64
KOG1479|consensus	406		82.36

>KOG0569|consensus

Probab=99.85  E-value=1.4e-20  Score=136.17  Aligned_cols=110  Identities=30%  Similarity=0.506  Sum_probs=100.9

Q ss_pred             ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHHH
Q psy168            1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------DWRTTTLISSVVPILA   74 (130)
Q Consensus         1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~~   74 (130)
                      +++++|+++|+..|......+.|+.|++|.+.||....+.+++.++|.+++..++..-      .|++.+.+..++.++.
T Consensus       118 ~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~  197 (485)
T KOG0569|consen  118 MLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ  197 (485)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999999999999999997764432      7999999999999999


Q ss_pred             HHHHhhcccchhHHHh-cCChHHHHHHHHHhhCCCCc
Q psy168           75 FAMILFLPESPTWLIY-KGRMVDAEKSLRWLRGWSKK  110 (130)
Q Consensus        75 ~~~~~~~pes~~~~~~-~~~~~~a~~~l~~~~~~~~~  110 (130)
                      .+..+++||||+|+.. |++.++|+++++.+++.+++
T Consensus       198 l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~  234 (485)
T KOG0569|consen  198 LALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDV  234 (485)
T ss_pred             HHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcc
Confidence            9999999999999977 89999999999999998653

>KOG0254|consensus

Probab=99.76  E-value=1.7e-17  Score=122.00  Aligned_cols=107  Identities=35%  Similarity=0.557  Sum_probs=100.6

Q ss_pred             ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHH
Q psy168            1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAF   75 (130)
Q Consensus         1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~   75 (130)
                      +++++|++.|+|.|....+.+.|++|++|++.||...+..+.+..+|..++.+.+...     +||..+++..+++++.+
T Consensus       144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~  223 (513)
T KOG0254|consen  144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILA  223 (513)
T ss_pred             HHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999999998888777     59999999999999988


Q ss_pred             HHHhhcccchhHHHhcCChHHHHHHHHHhhCC
Q psy168           76 AMILFLPESPTWLIYKGRMVDAEKSLRWLRGW  107 (130)
Q Consensus        76 ~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~  107 (130)
                      +..++.||||+|+.++++.+++++.++++++.
T Consensus       224 ~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~  255 (513)
T KOG0254|consen  224 LGMLFLPESPRWLIEKGRLEEAKRSLKRLRGL  255 (513)
T ss_pred             HHHHhCCCChHHHHHcCChHHHHHHHHHHhCC
Confidence            88899999999999999999999999999985

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.72  E-value=6.3e-17  Score=118.67  Aligned_cols=105  Identities=20%  Similarity=0.204  Sum_probs=89.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh------------------------
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI------------------------   57 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------------------------   57 (130)
                      ++++|++.|++.|...+..+.+++|++|+++|++..++.+.+..+|.++++.+...                        
T Consensus       118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (502)
T TIGR00887       118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVP  197 (502)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence            56899999999999999999999999999999999999999999988888766431                        


Q ss_pred             ---hhhHHHHHHHHHHHHHHHHHHhhcccchhHHHhcCChH-HHHHHHHHhhC
Q psy168           58 ---TDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMV-DAEKSLRWLRG  106 (130)
Q Consensus        58 ---~~wr~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~-~a~~~l~~~~~  106 (130)
                         .+||+.+.+.++++++.++..+++||||+|+..+++.+ ++++.+++.++
T Consensus       198 ~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~  250 (502)
T TIGR00887       198 AVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ  250 (502)
T ss_pred             hhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence               15999999988888877778889999999998888764 46766776654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.70  E-value=2.1e-16  Score=120.16  Aligned_cols=107  Identities=20%  Similarity=0.306  Sum_probs=95.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------------hhHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----------------DWRTTT   64 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------------~wr~~~   64 (130)
                      ++++|++.|++.|+..++...+++|++|++.|+...++++.++.+|.++++.++..+                 +||+.+
T Consensus       258 llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~  337 (742)
T TIGR01299       258 FLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFV  337 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHH
Confidence            578999999999999999999999999999999999999999999998888654221                 699999


Q ss_pred             HHHHHHHHHHHHHHhhcccchhHHHhcCChHHHHHHHHHhhCCC
Q psy168           65 LISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWS  108 (130)
Q Consensus        65 ~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~~  108 (130)
                      ++.+++.++.++..+++||||+|+..+++.+++.+.++++.+.|
T Consensus       338 ~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n  381 (742)
T TIGR01299       338 IVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN  381 (742)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            99888887777788899999999999999999999999988765

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.69  E-value=4.9e-20  Score=132.94  Aligned_cols=107  Identities=36%  Similarity=0.596  Sum_probs=96.6

Q ss_pred             ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h---hHHHHHHHHHHHHH
Q psy168            1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D---WRTTTLISSVVPIL   73 (130)
Q Consensus         1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~---wr~~~~~~~~~~~~   73 (130)
                      +++++|++.|++.|+..+....|+.|..|++.|++..++.+.++.+|.+++..++...    +   ||+.+++.++++++
T Consensus       104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~  183 (451)
T PF00083_consen  104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL  183 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3578999999999999999999999999999999999999999999998888775533    4   99999999999988


Q ss_pred             HHHHHhhcccchhHHHhcCChHHHHHHHHHhhCC
Q psy168           74 AFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGW  107 (130)
Q Consensus        74 ~~~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~  107 (130)
                      ..+...++||||+|+..+++.+||++.++++++.
T Consensus       184 ~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~  217 (451)
T PF00083_consen  184 VLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGK  217 (451)
T ss_pred             ccccccccccccceeccccccccccccccccccc
Confidence            8777789999999999999999999999997665

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0255|consensus

Probab=99.67  E-value=1.3e-15  Score=112.17  Aligned_cols=106  Identities=28%  Similarity=0.299  Sum_probs=90.3

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-DWRTTTLISSVVPILAFAMILF   80 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~wr~~~~~~~~~~~~~~~~~~~   80 (130)
                      +++.||+.|++.++...++..+++|+.+++.|+..+++....+..|....+..++.. +||+.+++..+++.+.++.+++
T Consensus       174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l  253 (521)
T KOG0255|consen  174 FLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFL  253 (521)
T ss_pred             HHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc
Confidence            678999999999999999999999999999999999994444444444444444444 8999999999999988878777


Q ss_pred             cccchhHHHhcCChHHHHHHHHHhhCC
Q psy168           81 LPESPTWLIYKGRMVDAEKSLRWLRGW  107 (130)
Q Consensus        81 ~pes~~~~~~~~~~~~a~~~l~~~~~~  107 (130)
                      .||||+|+..+++.+++.+.++++.+.
T Consensus       254 ~~Es~rwl~~~g~~~~a~~~l~~~a~~  280 (521)
T KOG0255|consen  254 PPESPRWLLSKGRIDEAIKILKKIAKL  280 (521)
T ss_pred             cCcChHHHHHcCchHHHHHHHHHHHhh
Confidence            789999999999999999999997654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.66  E-value=2.7e-15  Score=109.02  Aligned_cols=106  Identities=26%  Similarity=0.486  Sum_probs=90.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh------------hhhHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI------------TDWRTTTLISSV   69 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------------~~wr~~~~~~~~   69 (130)
                      ++++|+++|++.|+..+....+++|++|+++|++.+++.+.+..+|..+++.++..            .+||+.|++.++
T Consensus       123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~  202 (479)
T PRK10077        123 FVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAI  202 (479)
T ss_pred             HHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999988766431            289999999888


Q ss_pred             HHHHHHHHHhhcccchhHHHhcCChHHHHHHHHHhhCC
Q psy168           70 VPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGW  107 (130)
Q Consensus        70 ~~~~~~~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~  107 (130)
                      +.++..+..+++||+|+|+..+++.+++++.+++..+.
T Consensus       203 ~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~  240 (479)
T PRK10077        203 PALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN  240 (479)
T ss_pred             HHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCC
Confidence            87777666778999999988888888877777766543

>TIGR00898 2A0119 cation transport protein

Probab=99.65  E-value=3.1e-15  Score=109.57  Aligned_cols=106  Identities=27%  Similarity=0.365  Sum_probs=95.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-DWRTTTLISSVVPILAFAMILF   80 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~wr~~~~~~~~~~~~~~~~~~~   80 (130)
                      ++++|++.|++.+...+....+++|++|+++|+...++.+.+..+|.++++.++..+ +||+.+++.+++.++..+..++
T Consensus       183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999999999999999999888776 8999999999888887777788


Q ss_pred             cccchhHHHhcCChHHHHHHHHHhhCC
Q psy168           81 LPESPTWLIYKGRMVDAEKSLRWLRGW  107 (130)
Q Consensus        81 ~pes~~~~~~~~~~~~a~~~l~~~~~~  107 (130)
                      .||||+|+..+++.+++.+.+++..+.
T Consensus       263 ~~esp~~l~~~~~~~~a~~~l~~~~~~  289 (505)
T TIGR00898       263 VPESPRWLISQGRIEEALKILQRIAKI  289 (505)
T ss_pred             cCCChHHHHHCCCHHHHHHHHHHHHHH
Confidence            999999999999999988888776544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.51  E-value=7e-13  Score=95.42  Aligned_cols=106  Identities=35%  Similarity=0.595  Sum_probs=89.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhh---hhh----hhHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLN---AIT----DWRTTTLISSVVPILA   74 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~~----~wr~~~~~~~~~~~~~   74 (130)
                      ++++|++.|++.+...+....+++|++|+++|++..++++.+..+|..+++.+.   ...    +||+.|++..+..++.
T Consensus       130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~  209 (481)
T TIGR00879       130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL  209 (481)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH
Confidence            577999999999999999999999999999999999999999999999999988   332    8999999977666666


Q ss_pred             HHHHhhcccchhHHHhcCChHHHHHHHHHhhCC
Q psy168           75 FAMILFLPESPTWLIYKGRMVDAEKSLRWLRGW  107 (130)
Q Consensus        75 ~~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~  107 (130)
                      .+..++.||+|+++..+++.+++.+...+..+.
T Consensus       210 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (481)
T TIGR00879       210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGT  242 (481)
T ss_pred             HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCC
Confidence            667788999998887777777766666655443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0253|consensus

Probab=99.49  E-value=3.7e-13  Score=94.58  Aligned_cols=105  Identities=21%  Similarity=0.160  Sum_probs=94.3

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      +++.|.+.|+|.|+ .|...++-.|..|...|...+-+. ..|.+|.++...+....    ||||.....+.+..+++.+
T Consensus       169 L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f  246 (528)
T KOG0253|consen  169 LCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARF  246 (528)
T ss_pred             hhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH
Confidence            67889999999999 888889999999999999998888 99999999998887755    9999999988888888889


Q ss_pred             HhhcccchhHHHhcCChHHHHHHHHHhhCCC
Q psy168           78 ILFLPESPTWLIYKGRMVDAEKSLRWLRGWS  108 (130)
Q Consensus        78 ~~~~pes~~~~~~~~~~~~a~~~l~~~~~~~  108 (130)
                      +++.||||+|+..++++++|.+.+.++.+.|
T Consensus       247 ~~w~~ESpRf~~~~G~~~kAletL~kiArmN  277 (528)
T KOG0253|consen  247 LVWVYESPRFYLAKGDDYKALETLHKIARMN  277 (528)
T ss_pred             HhhcccCcchhhhcCChHHHHHHHHHHHHhc
Confidence            9999999999999999999999988876554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.48  E-value=2.2e-13  Score=99.88  Aligned_cols=90  Identities=18%  Similarity=0.142  Sum_probs=73.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh------------hhhhHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA------------ITDWRTTTLISSV   69 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------------~~~wr~~~~~~~~   69 (130)
                      ++++|+++|++.|+.++....+++|++|+++||+..++.+.+..+|..++..+..            ..+||+.|++..+
T Consensus       121 l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~  200 (490)
T PRK10642        121 LLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALP  200 (490)
T ss_pred             HHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHH
Confidence            5789999999999999999999999999999999999998888888777764421            1289999999876


Q ss_pred             HHHHHHHHHhhcccchhHHHhc
Q psy168           70 VPILAFAMILFLPESPTWLIYK   91 (130)
Q Consensus        70 ~~~~~~~~~~~~pes~~~~~~~   91 (130)
                      +.++..+.....||||+|...+
T Consensus       201 ~~l~~~~~~~~~~esp~~~~~~  222 (490)
T PRK10642        201 LGIIGLYLRHALEETPAFQQHV  222 (490)
T ss_pred             HHHHHHHHHHcCCCChhHHHHH
Confidence            6665455667789999986443

>KOG2533|consensus

Probab=99.40  E-value=6.5e-13  Score=97.29  Aligned_cols=85  Identities=19%  Similarity=0.189  Sum_probs=78.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh-------h---hhHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI-------T---DWRTTTLISSVVP   71 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------~---~wr~~~~~~~~~~   71 (130)
                      +++.|++.|+.+++..|....+++.|+.+++|++.++++..+.++|.+++.++++.       .   +|||.|++.++++
T Consensus       137 ~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~  216 (495)
T KOG2533|consen  137 LIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVIT  216 (495)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHH
Confidence            56889999999999999999999999999999999999999999999999888776       2   9999999999999


Q ss_pred             HHHHH-HHhhcccchh
Q psy168           72 ILAFA-MILFLPESPT   86 (130)
Q Consensus        72 ~~~~~-~~~~~pes~~   86 (130)
                      ++..+ .++++|+.|.
T Consensus       217 ~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  217 LVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHHheEEEEecCChh
Confidence            98876 7788999986

>PRK09952 shikimate transporter; Provisional

Probab=99.38  E-value=2.1e-12  Score=93.49  Aligned_cols=89  Identities=18%  Similarity=0.033  Sum_probs=73.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh------------hhhhHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA------------ITDWRTTTLISSV   69 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------------~~~wr~~~~~~~~   69 (130)
                      ++++|+++|++.|+..+....+++|+.|+++|++..+..+.+..+|.+++..+..            ..+||+.|++.++
T Consensus       128 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~  207 (438)
T PRK09952        128 LVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIV  207 (438)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999888865432            1389999999887


Q ss_pred             HHHHHHHHHhhcccchhHHHh
Q psy168           70 VPILAFAMILFLPESPTWLIY   90 (130)
Q Consensus        70 ~~~~~~~~~~~~pes~~~~~~   90 (130)
                      +.++........||+|+|...
T Consensus       208 ~~l~~~~l~~~~~es~~~~~~  228 (438)
T PRK09952        208 LVLIALWVRNGMEESAEFEQQ  228 (438)
T ss_pred             HHHHHHHHHHhCCCChhHHHH
Confidence            765554455678999987543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.35  E-value=6.9e-12  Score=89.17  Aligned_cols=85  Identities=12%  Similarity=0.042  Sum_probs=72.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|+++|++.+. .......++|++|+++|++..++.+.+..+|..+++.++..+    +||+.|++.++++.+..+ 
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            57899999999996 556667779999999999999999999999999998887766    999999998777766554 


Q ss_pred             HHhhcccchhH
Q psy168           77 MILFLPESPTW   87 (130)
Q Consensus        77 ~~~~~pes~~~   87 (130)
                      .+++.||+|++
T Consensus       161 ~~~~lp~~p~~  171 (368)
T TIGR00903       161 VLAALPALPFQ  171 (368)
T ss_pred             HHHHcCCCCCC
Confidence            67788999865

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.34  E-value=7.1e-12  Score=91.94  Aligned_cols=105  Identities=16%  Similarity=0.106  Sum_probs=77.0

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++++|++.|++.+........++.|.+|++.|++..++ ++++...|.+...+.+...    +|+..++...+++++..+
T Consensus       345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~  424 (490)
T PRK10642        345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI  424 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            34578888887776666777888999999999998886 6666555543333333322    577777766666666666


Q ss_pred             HHhhcccchhHHHhc-----CChHHHHHHHHHhhC
Q psy168           77 MILFLPESPTWLIYK-----GRMVDAEKSLRWLRG  106 (130)
Q Consensus        77 ~~~~~pes~~~~~~~-----~~~~~a~~~l~~~~~  106 (130)
                      ..++.||||+|+.++     ++.+||++.++++++
T Consensus       425 ~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        425 TGVTMKETANRPLKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             HHHHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence            666789999998765     889999999999874

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.30  E-value=2e-11  Score=88.16  Aligned_cols=86  Identities=22%  Similarity=0.303  Sum_probs=71.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh------------hhhhHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA------------ITDWRTTTLISSV   69 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------------~~~wr~~~~~~~~   69 (130)
                      ++++|+++|++.|+..+....+++|+.|+++|++..+..+.+...|.++++.+..            ..+||+.|++.++
T Consensus       127 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~  206 (432)
T PRK10406        127 LLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAV  206 (432)
T ss_pred             HHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            6789999999999999999999999999999999999888888777777765422            1289999999888


Q ss_pred             HHHHHHHHHhhcccchhH
Q psy168           70 VPILAFAMILFLPESPTW   87 (130)
Q Consensus        70 ~~~~~~~~~~~~pes~~~   87 (130)
                      +.++........||+|++
T Consensus       207 ~~ll~~~~~~~~~e~~~~  224 (432)
T PRK10406        207 LAVVALWLRRQLDETSQQ  224 (432)
T ss_pred             HHHHHHHHHhcCCCCchH
Confidence            777766566678898765

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.29  E-value=8.8e-11  Score=83.30  Aligned_cols=88  Identities=23%  Similarity=0.320  Sum_probs=74.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h--hHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D--WRTTTLISSVVPILAF   75 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~--wr~~~~~~~~~~~~~~   75 (130)
                      ++++|++.|++.+...+....++.|+.|+++|++..++.+.+..+|..+++.+....    +  ||+.|++.+++.++..
T Consensus       103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       103 MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999998876654    4  9999998776666655


Q ss_pred             HHHhhcccchhHHH
Q psy168           76 AMILFLPESPTWLI   89 (130)
Q Consensus        76 ~~~~~~pes~~~~~   89 (130)
                      +.....||++.+..
T Consensus       183 ~~~~~~~~~~~~~~  196 (405)
T TIGR00891       183 WLRKNIPEAEDWKE  196 (405)
T ss_pred             HHHHhCCCChhHHH
Confidence            56677899876643

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.29  E-value=8.9e-12  Score=89.66  Aligned_cols=85  Identities=16%  Similarity=0.149  Sum_probs=73.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh----------hhhHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI----------TDWRTTTLISSVVP   71 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----------~~wr~~~~~~~~~~   71 (130)
                      +++.|+++|++.+...+....+++|++|+++|++..++++.+..+|..+++.++..          .+||+.|++.+++.
T Consensus        99 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~  178 (412)
T TIGR02332        99 LYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPS  178 (412)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHH
Confidence            57899999999999999888999999999999999999999999999988877543          28999999988887


Q ss_pred             HHHHH-HHhhcccchh
Q psy168           72 ILAFA-MILFLPESPT   86 (130)
Q Consensus        72 ~~~~~-~~~~~pes~~   86 (130)
                      ++..+ .++++||+|.
T Consensus       179 l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       179 VILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHhhccCCCcc
Confidence            76554 6677899884

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG2532|consensus

Probab=99.25  E-value=2.4e-11  Score=88.66  Aligned_cols=85  Identities=20%  Similarity=0.353  Sum_probs=75.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      +++.|+++|++.|..++....+.+.|.|+++|++..++...+..+|.+++..+++.+     ||+..|++.++.+++..+
T Consensus       131 ~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~  210 (466)
T KOG2532|consen  131 LLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFI  210 (466)
T ss_pred             hHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999998776665     899999999999999877


Q ss_pred             -HHhhcccchh
Q psy168           77 -MILFLPESPT   86 (130)
Q Consensus        77 -~~~~~pes~~   86 (130)
                       .+++..|+|.
T Consensus       211 ~w~~~~~d~P~  221 (466)
T KOG2532|consen  211 LWFLFYSDSPS  221 (466)
T ss_pred             HHHHHhcCCcc
Confidence             4556667775

>KOG0252|consensus

Probab=99.23  E-value=6.5e-12  Score=90.19  Aligned_cols=100  Identities=18%  Similarity=0.218  Sum_probs=82.7

Q ss_pred             ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------------------hhH
Q psy168            1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------------------DWR   61 (130)
Q Consensus         1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------------------~wr   61 (130)
                      ++.+.|+++|+|.|+++|++.+..+|.+..+.||...+.+..++..|.+.|.+++..+                   -||
T Consensus       146 ~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWR  225 (538)
T KOG0252|consen  146 TLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWR  225 (538)
T ss_pred             HHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHH
Confidence            3677899999999999999999999999999999999998888888887777664433                   599


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhHHHhc-CChHHHHHH
Q psy168           62 TTTLISSVVPILAFAMILFLPESPTWLIYK-GRMVDAEKS  100 (130)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~pes~~~~~~~-~~~~~a~~~  100 (130)
                      ..+.+.+++++.+....+.+|||++|-... ++.++|.+.
T Consensus       226 l~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d  265 (538)
T KOG0252|consen  226 IIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGD  265 (538)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhc
Confidence            999999999999998999999999986332 333444433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.14  E-value=2.3e-10  Score=81.52  Aligned_cols=82  Identities=22%  Similarity=0.267  Sum_probs=75.2

Q ss_pred             ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      +++++|++.|+..|..++++..+.+++.|+++|++++++...+..++.++|..++.++    |||..|+..+..+++.++
T Consensus       103 ~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~  182 (394)
T COG2814         103 VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALL  182 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999999999999998888887766    999999999999988876


Q ss_pred             -HHhhcc
Q psy168           77 -MILFLP   82 (130)
Q Consensus        77 -~~~~~p   82 (130)
                       .+..+|
T Consensus       183 ~~~~~lP  189 (394)
T COG2814         183 LLWKLLP  189 (394)
T ss_pred             HHHHhCC
Confidence             777788

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.12  E-value=7.8e-10  Score=79.03  Aligned_cols=88  Identities=23%  Similarity=0.420  Sum_probs=74.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      +++.|++.|++.+...+....++.|++|+++|++..++.+.+..+|..+++.++...    +||+.|++.++...+..+ 
T Consensus       106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK11551        106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999999999999999998876544    899999987766555544 


Q ss_pred             HHhhcccchhHHH
Q psy168           77 MILFLPESPTWLI   89 (130)
Q Consensus        77 ~~~~~pes~~~~~   89 (130)
                      ...+.||+|++..
T Consensus       186 ~~~~l~~~~~~~~  198 (406)
T PRK11551        186 LMRWLPESRAFAQ  198 (406)
T ss_pred             HHHhCCCChhHHh
Confidence            5566899887643

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.11  E-value=1.6e-10  Score=84.13  Aligned_cols=85  Identities=13%  Similarity=0.186  Sum_probs=72.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      +++.|+++|++.+...+....+++|++|+++|++..++.+.+..+|..+++.+...+     +||+.|++.++++++..+
T Consensus       134 l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~  213 (465)
T TIGR00894       134 VVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSL  213 (465)
T ss_pred             HHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999888775543     899999998888777665


Q ss_pred             -HHhhcccchh
Q psy168           77 -MILFLPESPT   86 (130)
Q Consensus        77 -~~~~~pes~~   86 (130)
                       .+.+.+|+|+
T Consensus       214 ~~~~~~~~~p~  224 (465)
T TIGR00894       214 LWFVFPADDPS  224 (465)
T ss_pred             HHHHHhcCCcc
Confidence             4455667774

>PRK15075 citrate-proton symporter; Provisional

Probab=99.10  E-value=6.6e-10  Score=80.40  Aligned_cols=86  Identities=24%  Similarity=0.380  Sum_probs=64.0

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh------------hhhHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI------------TDWRTTTLISSV   69 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------------~~wr~~~~~~~~   69 (130)
                      ++++|+++|++.|...+....+++|++|+++|++..++.+.+..+|..+++.++..            .+||+.|++..+
T Consensus       120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        120 VLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            46799999999999999889999999999999999999887766666655544332            289999998654


Q ss_pred             HHHHHHHHHhhcccchhH
Q psy168           70 VPILAFAMILFLPESPTW   87 (130)
Q Consensus        70 ~~~~~~~~~~~~pes~~~   87 (130)
                      ...+........||++.+
T Consensus       200 ~~~~~~~~~~~~~e~~~~  217 (434)
T PRK15075        200 IVPFIFLIRRSLEETEEF  217 (434)
T ss_pred             HHHHHHHHHHhcCCCHHH
Confidence            433333334445676543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.10  E-value=9.9e-10  Score=83.14  Aligned_cols=83  Identities=17%  Similarity=0.223  Sum_probs=70.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------------------
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----------------------   58 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------   58 (130)
                      ++++|+++|+|.++.++....++.|++|+++|+...++++.+..+|..++++++..+                       
T Consensus       175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr  254 (633)
T TIGR00805       175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR  254 (633)
T ss_pred             hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc
Confidence            568999999999999999999999999999999999999999999999998875533                       


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHhhcccc
Q psy168           59 ---DWRTTTLISSVVPILAFAMILFLPES   84 (130)
Q Consensus        59 ---~wr~~~~~~~~~~~~~~~~~~~~pes   84 (130)
                         .|+..|++.+++.++..+.++++|++
T Consensus       255 WiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       255 WIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence               26777888877777766656666664

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.10  E-value=5.1e-10  Score=80.41  Aligned_cols=87  Identities=16%  Similarity=0.220  Sum_probs=70.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      ++++|++.|++.|..++....++.|++|+++|++..++.+.+..+|.++++.+....    +||+.|++..++.++....
T Consensus       109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~  188 (426)
T PRK12307        109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYI  188 (426)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999998776543    8999998865444433334


Q ss_pred             HhhcccchhHH
Q psy168           78 ILFLPESPTWL   88 (130)
Q Consensus        78 ~~~~pes~~~~   88 (130)
                      ....||++++.
T Consensus       189 ~~~~p~~~~~~  199 (426)
T PRK12307        189 RARAPESKEWE  199 (426)
T ss_pred             HHHCCCChHHH
Confidence            44567776543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.10  E-value=2e-10  Score=80.77  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=72.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|++.|++.+...+....+++|++|+++|++..++.+....+|..+++.+....    +||+.|+..+++.++..+ 
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  164 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL  164 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999999999998887654    899999988877766555 


Q ss_pred             HHhhcccch
Q psy168           77 MILFLPESP   85 (130)
Q Consensus        77 ~~~~~pes~   85 (130)
                      .++..||+|
T Consensus       165 ~~~~~~~~~  173 (399)
T TIGR00893       165 WLKFIPDPP  173 (399)
T ss_pred             hhheecCCC
Confidence            445566655

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.08  E-value=5.9e-10  Score=78.55  Aligned_cols=87  Identities=25%  Similarity=0.347  Sum_probs=71.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh------------hhhHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI------------TDWRTTTLISSV   69 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------------~~wr~~~~~~~~   69 (130)
                      ++++|+++|++.+...+....+++|+.|+++|+...+..+.+..+|..+++.+...            .+||+.+++.++
T Consensus        99 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  178 (394)
T TIGR00883        99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAV  178 (394)
T ss_pred             HHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999888776432            279999988776


Q ss_pred             HHHHHHHHHhhcccchhHH
Q psy168           70 VPILAFAMILFLPESPTWL   88 (130)
Q Consensus        70 ~~~~~~~~~~~~pes~~~~   88 (130)
                      +.++..+.....||++++.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~  197 (394)
T TIGR00883       179 LVLIGLYLRRNLEETPVFE  197 (394)
T ss_pred             HHHHHHHHHHhcCCChhHH
Confidence            6665555556678877543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00895 2A0115 benzoate transport

Probab=99.08  E-value=6.2e-10  Score=78.65  Aligned_cols=90  Identities=27%  Similarity=0.382  Sum_probs=75.3

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH-H
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAF-A   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~-~   76 (130)
                      +++.|++.|++.+...+....+++|+.|+++|++..++.+.+..+|..+++.+....    +|++.+++.++...+.. +
T Consensus       108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  187 (398)
T TIGR00895       108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL  187 (398)
T ss_pred             HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999998887655    89999998865555544 4


Q ss_pred             HHhhcccchhHHHhc
Q psy168           77 MILFLPESPTWLIYK   91 (130)
Q Consensus        77 ~~~~~pes~~~~~~~   91 (130)
                      ...+.||++++...+
T Consensus       188 ~~~~~~~~~~~~~~~  202 (398)
T TIGR00895       188 LMRFLPESIDFLVSK  202 (398)
T ss_pred             HHHhCCCCChHHHhc
Confidence            667789988765444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.08  E-value=1.6e-09  Score=78.10  Aligned_cols=85  Identities=16%  Similarity=0.179  Sum_probs=71.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|+++|++.+...+....++.|++|+++|++..+++.....+|..+++.++...    +||+.|++.++..++..+ 
T Consensus       107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        107 FLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            578999999999876777778899999999999999999998888888888887655    899999998887777655 


Q ss_pred             HHhhcccchh
Q psy168           77 MILFLPESPT   86 (130)
Q Consensus        77 ~~~~~pes~~   86 (130)
                      .++..||+++
T Consensus       187 ~~~~lp~~~~  196 (413)
T PRK15403        187 LLLAMPETVK  196 (413)
T ss_pred             HHHhCCCCcc
Confidence            4566888753

>PRK03545 putative arabinose transporter; Provisional

Probab=99.03  E-value=1.2e-09  Score=77.91  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=71.3

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|+++|++.+...+....+++|++|+++|++..++++....+|..+++.++..+    +||+.|++.+++.++..+ 
T Consensus       100 l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~  179 (390)
T PRK03545        100 LLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence            578999999999988888899999999999999999999999999999998886654    999999998887776654 


Q ss_pred             HHhhcccch
Q psy168           77 MILFLPESP   85 (130)
Q Consensus        77 ~~~~~pes~   85 (130)
                      .+...||.|
T Consensus       180 ~~~~~~~~~  188 (390)
T PRK03545        180 LIKLLPLLP  188 (390)
T ss_pred             HHHhCCCCC
Confidence            445567654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.01  E-value=3.1e-09  Score=76.96  Aligned_cols=86  Identities=16%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      +++.|++.|++.|...+....+++|++|+++|++..++++.+..+|..+++.+....    +||+.|++.+++.++..+ 
T Consensus       114 l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~  193 (434)
T PRK11663        114 FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF  193 (434)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            456899999999998899999999999999999999999999999999998776544    999999998877665544 


Q ss_pred             HHhhcccchhH
Q psy168           77 MILFLPESPTW   87 (130)
Q Consensus        77 ~~~~~pes~~~   87 (130)
                      ..+..+|+|.+
T Consensus       194 ~~~~~~~~p~~  204 (434)
T PRK11663        194 LCWRLRDKPQA  204 (434)
T ss_pred             HHHHcCCCHhh
Confidence            55567888754

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.00  E-value=2.6e-09  Score=76.56  Aligned_cols=84  Identities=20%  Similarity=0.186  Sum_probs=71.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|++.|++.|...+....+++|++|+++|++..+.......+|..+++.++..+    +||+.|++.++...+..+ 
T Consensus       111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999988887765    999999998776665544 


Q ss_pred             HHhhcccch
Q psy168           77 MILFLPESP   85 (130)
Q Consensus        77 ~~~~~pes~   85 (130)
                      .....||++
T Consensus       191 ~~~~~p~~~  199 (394)
T PRK10213        191 IIKSLPSLP  199 (394)
T ss_pred             HHHHCCCCC
Confidence            344567765

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.99  E-value=1.4e-09  Score=75.78  Aligned_cols=84  Identities=29%  Similarity=0.480  Sum_probs=71.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|++.|++.+...+....++.|++|+++|++..+..+.+..+|..+++.++..+    +||+.|++.++..++..+ 
T Consensus        88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen   88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            578999999999999999999999999999999999999999999999999987766    899999999888887765 


Q ss_pred             HHhhcccch
Q psy168           77 MILFLPESP   85 (130)
Q Consensus        77 ~~~~~pes~   85 (130)
                      ...+.++.+
T Consensus       168 ~~~~~~~~~  176 (352)
T PF07690_consen  168 FILFLPEPP  176 (352)
T ss_dssp             HHCCC---S
T ss_pred             Hhhhhhhcc
Confidence            335555544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG1330|consensus

Probab=98.98  E-value=4.5e-11  Score=85.90  Aligned_cols=83  Identities=17%  Similarity=0.136  Sum_probs=74.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      +.++|.++|+|++...++++.+++|.+|.++|++..++++.....|..+|.+.+...     .|||.|+..++.++++.+
T Consensus       124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~  203 (493)
T KOG1330|consen  124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGL  203 (493)
T ss_pred             HHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999998887766     599999999999998877


Q ss_pred             -HHhhcccc
Q psy168           77 -MILFLPES   84 (130)
Q Consensus        77 -~~~~~pes   84 (130)
                       .+++.+|.
T Consensus       204 L~~~f~~eP  212 (493)
T KOG1330|consen  204 LVFLFVREP  212 (493)
T ss_pred             HHHhhccCc
Confidence             55666664

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.95  E-value=9.3e-09  Score=72.66  Aligned_cols=85  Identities=13%  Similarity=0.079  Sum_probs=71.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|++.|++.+...+....++.|++|+++|++..+..+....+|..+++.++...    +||+.+++.++...+..+ 
T Consensus        96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  175 (385)
T TIGR00710        96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSAL  175 (385)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999988887654    899999988777666555 


Q ss_pred             HHhhcccchh
Q psy168           77 MILFLPESPT   86 (130)
Q Consensus        77 ~~~~~pes~~   86 (130)
                      .++..||+++
T Consensus       176 ~~~~~~~~~~  185 (385)
T TIGR00710       176 IFFILPETLP  185 (385)
T ss_pred             HHHhCCCCCC
Confidence            4556677653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.95  E-value=8e-09  Score=75.65  Aligned_cols=87  Identities=21%  Similarity=0.299  Sum_probs=72.3

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      ++++|++.|++.+...+....++.|.+|+++|++..++......+|..+++.+...+    +||+.|++..++..+..+.
T Consensus       111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~  190 (496)
T PRK03893        111 LFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWL  190 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999998886655    8999998865554444445


Q ss_pred             HhhcccchhHH
Q psy168           78 ILFLPESPTWL   88 (130)
Q Consensus        78 ~~~~pes~~~~   88 (130)
                      ....||++++.
T Consensus       191 ~~~~p~~~~~~  201 (496)
T PRK03893        191 RKNLPEAEDWK  201 (496)
T ss_pred             HHhCCCchhhh
Confidence            56678877653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.94  E-value=5.2e-09  Score=77.05  Aligned_cols=84  Identities=15%  Similarity=0.252  Sum_probs=69.0

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhcc-CCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVC-EPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++++|+++|++.+...+.....+.+.+ |+++|++..+++.....+|..+++.++..+    +|||.|++.....++..+
T Consensus        97 li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~  176 (495)
T PRK14995         97 LIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMG  176 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Confidence            578999999999988887777776664 789999999999999999999999987766    999999987666555544


Q ss_pred             -HHhhcccch
Q psy168           77 -MILFLPESP   85 (130)
Q Consensus        77 -~~~~~pes~   85 (130)
                       ...+.|+.+
T Consensus       177 l~~~~l~~~~  186 (495)
T PRK14995        177 LTARYVPRQA  186 (495)
T ss_pred             HHHHhCCCCC
Confidence             556677765

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.91  E-value=2.6e-09  Score=77.86  Aligned_cols=84  Identities=20%  Similarity=0.222  Sum_probs=71.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|+++|++.+...+....++.|++|+++|++..+++.....+|..+++.++...    +||+.|++...+.++..+ 
T Consensus        93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~  172 (485)
T TIGR00711        93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV  172 (485)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999998887665    899999988777666554 


Q ss_pred             HHhhcccch
Q psy168           77 MILFLPESP   85 (130)
Q Consensus        77 ~~~~~pes~   85 (130)
                      ..+..||++
T Consensus       173 ~~~~~~~~~  181 (485)
T TIGR00711       173 AFFILPRDK  181 (485)
T ss_pred             HHHHcCCcc
Confidence            455566643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.90  E-value=7.8e-09  Score=73.63  Aligned_cols=84  Identities=19%  Similarity=0.199  Sum_probs=70.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      +++.|++.|++.|...+....+++|+.++++|++..+.+..+..+|..+++.++...    +||+.|++.++...+..+ 
T Consensus        94 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091         94 LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            577999999999988888888999999999999999999988899888888776544    899999998877666554 


Q ss_pred             HHhhcccch
Q psy168           77 MILFLPESP   85 (130)
Q Consensus        77 ~~~~~pes~   85 (130)
                      .+...||.+
T Consensus       174 ~~~~lp~~~  182 (382)
T PRK10091        174 IYFWVPDIR  182 (382)
T ss_pred             HHHhCCCCC
Confidence            555678754

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.89  E-value=1.7e-08  Score=73.12  Aligned_cols=86  Identities=14%  Similarity=0.167  Sum_probs=69.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI-----TDWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-----~~wr~~~~~~~~~~~~~~~   76 (130)
                      +.+.|++.|++.|...+....++.|++|+++|++..++++....+|..+++.+...     .+||+.|++.+++.++..+
T Consensus       121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~  200 (438)
T TIGR00712       121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL  200 (438)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            35679999999998888888999999999999999999999988888877655332     2899999998887777544


Q ss_pred             -HHhhcccchhH
Q psy168           77 -MILFLPESPTW   87 (130)
Q Consensus        77 -~~~~~pes~~~   87 (130)
                       .+++.||+|..
T Consensus       201 ~~~~~~~~~~~~  212 (438)
T TIGR00712       201 FAFAMMRDTPQS  212 (438)
T ss_pred             HHHHhccCCHHh
Confidence             66677887753

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.86  E-value=2.4e-08  Score=60.59  Aligned_cols=82  Identities=22%  Similarity=0.365  Sum_probs=68.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      +.+.+++.|++.+...+....++.|..|+++|++..+..+....+|..+++.+....    +|++.+++..+...+..+ 
T Consensus        54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (141)
T TIGR00880        54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL  133 (141)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            356789999999998899999999999999999999999999999999998887765    799999888776666555 


Q ss_pred             HHhhccc
Q psy168           77 MILFLPE   83 (130)
Q Consensus        77 ~~~~~pe   83 (130)
                      .+...||
T Consensus       134 ~~~~~~~  140 (141)
T TIGR00880       134 LAFLLPE  140 (141)
T ss_pred             HhhcCCC
Confidence            4444555

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.86  E-value=2.4e-08  Score=69.80  Aligned_cols=75  Identities=8%  Similarity=-0.055  Sum_probs=65.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++++|++.|++.+...+....+++|+.|+++|++..++.+.+..+|..+++.++...    +||+.+++.++..++..+
T Consensus        95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~  173 (365)
T TIGR00900        95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISAL  173 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999887665    899999887766555444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.86  E-value=3.4e-08  Score=70.76  Aligned_cols=85  Identities=19%  Similarity=0.171  Sum_probs=68.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      +++.|++.|++.+...+....++.|.+|+++|.+..++.......|..+++.+....    +||+.+++.++...+..+ 
T Consensus       104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~  183 (406)
T PRK15402        104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFG  183 (406)
T ss_pred             HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence            567899999999988888889999999999999988888777777778887775544    899999988777766555 


Q ss_pred             HHhhcccchh
Q psy168           77 MILFLPESPT   86 (130)
Q Consensus        77 ~~~~~pes~~   86 (130)
                      .+...||+++
T Consensus       184 ~~~~~~~~~~  193 (406)
T PRK15402        184 LWRAMPETAG  193 (406)
T ss_pred             HHHhCCCCCc
Confidence            4556787754

>PTZ00207 hypothetical protein; Provisional

Probab=98.81  E-value=3.7e-08  Score=73.96  Aligned_cols=102  Identities=13%  Similarity=0.025  Sum_probs=74.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHH-HHHhhhhh--hhHHHHHHHHHHHHHHHH-H
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALG-IFFLNAIT--DWRTTTLISSVVPILAFA-M   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~--~wr~~~~~~~~~~~~~~~-~   77 (130)
                      +++.|++.|++.+...+.....+.+++| ++||+..++...+..+|..+ +++...+.  +|+..|++.++.++++.+ .
T Consensus       123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~  201 (591)
T PTZ00207        123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA  201 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999888888899999986 78999999999999999975 44444444  888888887777776554 3


Q ss_pred             Hhh--cccchhHHHhcCChHHHHHHHHHh
Q psy168           78 ILF--LPESPTWLIYKGRMVDAEKSLRWL  104 (130)
Q Consensus        78 ~~~--~pes~~~~~~~~~~~~a~~~l~~~  104 (130)
                      ..+  .|+.+++..++++.+++++.+++.
T Consensus       202 ~~~vr~p~~~~~~~~~~~~~~~~~~~~~~  230 (591)
T PTZ00207        202 IVFMRLPPFHLTGYQEKHLDEEEKAQRLM  230 (591)
T ss_pred             HhheeCCcchhhcccccCCCHHHHHHHhh
Confidence            333  455555555555555555554443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.80  E-value=5.6e-08  Score=69.31  Aligned_cols=84  Identities=19%  Similarity=0.257  Sum_probs=70.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.++...    +||+.+++.++...+..+ 
T Consensus        94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473         94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence            467899999999988888999999999999999999999988888888888776654    899999998777666554 


Q ss_pred             HHhhcccch
Q psy168           77 MILFLPESP   85 (130)
Q Consensus        77 ~~~~~pes~   85 (130)
                      .....||++
T Consensus       174 ~~~~~~~~~  182 (392)
T PRK10473        174 SLFILKETR  182 (392)
T ss_pred             HHHHcCCCC
Confidence            556677764

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.79  E-value=3.7e-08  Score=69.65  Aligned_cols=84  Identities=13%  Similarity=0.190  Sum_probs=71.0

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.++...    +||+.|++.+++..+..+ 
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence            467899999999998888999999999999999999999999999999998886654    899999988777766554 


Q ss_pred             HHhhcccch
Q psy168           77 MILFLPESP   85 (130)
Q Consensus        77 ~~~~~pes~   85 (130)
                      ..++.||++
T Consensus       162 ~~~~~~~~~  170 (377)
T PRK11102        162 VFFFIPETL  170 (377)
T ss_pred             HHHhCCccC
Confidence            556677764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.78  E-value=5.7e-08  Score=70.76  Aligned_cols=86  Identities=15%  Similarity=0.207  Sum_probs=67.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHH-HHHHHhhhh----hhhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGA-LGIFFLNAI----TDWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~----~~wr~~~~~~~~~~~~~~~   76 (130)
                      ++++|++.|++.|...+.....+.|++|+++|++..++++.+..+|. +.+++....    .+||+.|++.+++.++..+
T Consensus       123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~  202 (452)
T PRK11273        123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVAL  202 (452)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            46789999999998888778889999999999999999988888876 445543221    2999999998877666544


Q ss_pred             -HHhhcccchhH
Q psy168           77 -MILFLPESPTW   87 (130)
Q Consensus        77 -~~~~~pes~~~   87 (130)
                       ..++.||+|+.
T Consensus       203 l~~~~~~~~~~~  214 (452)
T PRK11273        203 FAFAMMRDTPQS  214 (452)
T ss_pred             HHHHHccCCHhh
Confidence             66777888754

>PRK12382 putative transporter; Provisional

Probab=98.78  E-value=4.6e-08  Score=69.74  Aligned_cols=83  Identities=18%  Similarity=0.267  Sum_probs=65.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      ++++|+++|++.+...+....++.|+.|+++|++..++.+.+...|..+++.++..+    +|++.+.+..+..++....
T Consensus       115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  194 (392)
T PRK12382        115 LVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF  194 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence            567899999999988888888999999999999999999999999998988886654    8998877665544433333


Q ss_pred             Hhhcccc
Q psy168           78 ILFLPES   84 (130)
Q Consensus        78 ~~~~pes   84 (130)
                      ....||.
T Consensus       195 ~~~~~~~  201 (392)
T PRK12382        195 NGTVRKV  201 (392)
T ss_pred             HHhccCC
Confidence            3334443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.77  E-value=9.6e-08  Score=70.46  Aligned_cols=85  Identities=13%  Similarity=0.060  Sum_probs=70.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      +.+.+++.|++.+...+....++.|++|+++|++..++.+.+..+|.++++.+...+     +||..|++.++..++..+
T Consensus       110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l  189 (491)
T PRK11010        110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCII  189 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence            456789999999988888899999999999999999999999999998888664433     899999998877776665


Q ss_pred             HHhhcccchh
Q psy168           77 MILFLPESPT   86 (130)
Q Consensus        77 ~~~~~pes~~   86 (130)
                      ..++.||+++
T Consensus       190 ~~~~~~e~~~  199 (491)
T PRK11010        190 ATLLAPEPTD  199 (491)
T ss_pred             HHHhcCCCcc
Confidence            5556788753

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.76  E-value=9.9e-09  Score=75.01  Aligned_cols=85  Identities=14%  Similarity=0.019  Sum_probs=69.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------hhHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------DWRTTTLISSVVPILA   74 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------~wr~~~~~~~~~~~~~   74 (130)
                      +++.|++.|++.+...+....+++|++|+++||+..++++.+..+|..+++.+....       +||..|.+.+++.++.
T Consensus       125 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~  204 (467)
T PRK09556        125 MIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALII  204 (467)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999999999999998887765422       5888888877777665


Q ss_pred             HH-HHhhcccchh
Q psy168           75 FA-MILFLPESPT   86 (130)
Q Consensus        75 ~~-~~~~~pes~~   86 (130)
                      .+ .+++.+++|.
T Consensus       205 ~i~~~~~~~~~p~  217 (467)
T PRK09556        205 GFIGLRYGSDSPE  217 (467)
T ss_pred             HHHHHHhCCCChh
Confidence            54 4455566653

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.75  E-value=8.7e-09  Score=72.29  Aligned_cols=85  Identities=16%  Similarity=0.141  Sum_probs=70.0

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHH-Hhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIF-FLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++++|++.|++.+...+....+++|++|+++|++..++.+.+..+|..+++ .+....    +||+.|++.+++..+..+
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (379)
T TIGR00881        86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL  165 (379)
T ss_pred             HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999999999999999888 343332    899999988776666544


Q ss_pred             -HHhhcccchh
Q psy168           77 -MILFLPESPT   86 (130)
Q Consensus        77 -~~~~~pes~~   86 (130)
                       ..++.||+|+
T Consensus       166 ~~~~~~~~~~~  176 (379)
T TIGR00881       166 ICFLLLRDSPQ  176 (379)
T ss_pred             HHheeeCCCcc
Confidence             5566677654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.74  E-value=6.9e-08  Score=69.21  Aligned_cols=84  Identities=17%  Similarity=0.074  Sum_probs=66.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFAMIL   79 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~~~~   79 (130)
                      ++.|+++|++.+...|....++.|++|+++|++..++.+.....|.++++.+++.+   .|+..+.+.+....+..+...
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~  171 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNL  171 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999998776   445555544433333334556


Q ss_pred             hcccchh
Q psy168           80 FLPESPT   86 (130)
Q Consensus        80 ~~pes~~   86 (130)
                      ..||++.
T Consensus       172 ~l~~~~~  178 (393)
T PRK11195        172 FIPRLGA  178 (393)
T ss_pred             cCCCCcc
Confidence            6787653

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.73  E-value=9e-08  Score=70.05  Aligned_cols=83  Identities=17%  Similarity=0.164  Sum_probs=65.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHH---HHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLI---SSVVPILAF   75 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~---~~~~~~~~~   75 (130)
                      +.+.|++.|+++|+.. ....+++.|+|+++|+++.++...+..+|.++++++...+   +||+.+.+   ......+.+
T Consensus       118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~  196 (511)
T TIGR00806       118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSV  196 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence            5789999999999999 8999999999999999999999999999999999887766   88875543   222222333


Q ss_pred             HHHhhcccch
Q psy168           76 AMILFLPESP   85 (130)
Q Consensus        76 ~~~~~~pes~   85 (130)
                      +.-+++|.-+
T Consensus       197 ~~a~~LP~~~  206 (511)
T TIGR00806       197 FLALFLKRPK  206 (511)
T ss_pred             HHHHhCCCCc
Confidence            3445666433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.72  E-value=5.1e-08  Score=69.60  Aligned_cols=83  Identities=16%  Similarity=0.176  Sum_probs=66.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      +++.|+++|++.+...+....++.|+.|+++|++..++.+.....|..+++.++...    +|++.+++..+..++....
T Consensus       115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  194 (399)
T PRK05122        115 LLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL  194 (399)
T ss_pred             HHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            567999999999999999899999999999999999998888888888888776654    8999888776655544443


Q ss_pred             Hhhcccc
Q psy168           78 ILFLPES   84 (130)
Q Consensus        78 ~~~~pes   84 (130)
                      ....|++
T Consensus       195 ~~~~~~~  201 (399)
T PRK05122        195 ARPRPAV  201 (399)
T ss_pred             HhcCCCC
Confidence            3334443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.71  E-value=1.9e-07  Score=67.08  Aligned_cols=82  Identities=24%  Similarity=0.319  Sum_probs=68.3

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH-H
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFA-M   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~-~   77 (130)
                      ++++|++.|++.+...+....++.|+.|+++|++..++......+|..+++.++..+   +||+.|++.++..++..+ .
T Consensus       102 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~  181 (400)
T PRK11646        102 LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFN  181 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            567899999999888888889999999999999999999999999999998887765   899999988776665543 3


Q ss_pred             Hhhccc
Q psy168           78 ILFLPE   83 (130)
Q Consensus        78 ~~~~pe   83 (130)
                      .++.||
T Consensus       182 ~~~~~~  187 (400)
T PRK11646        182 AWLLPA  187 (400)
T ss_pred             HHhCCc
Confidence            445565

>PRK10504 putative transporter; Provisional

Probab=98.69  E-value=9.6e-08  Score=69.68  Aligned_cols=83  Identities=17%  Similarity=0.196  Sum_probs=68.3

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|+++|++.+...+....++.|++|+++|++..++......+|..+++.++..+    +||+.|++......+..+ 
T Consensus       101 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~  180 (471)
T PRK10504        101 LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIA  180 (471)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999899999988887655    899999987665555444 


Q ss_pred             HHhhcccc
Q psy168           77 MILFLPES   84 (130)
Q Consensus        77 ~~~~~pes   84 (130)
                      .....|+.
T Consensus       181 ~~~~~~~~  188 (471)
T PRK10504        181 TLMLMPNY  188 (471)
T ss_pred             HHHhCCCc
Confidence            44444543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.67  E-value=9.7e-08  Score=76.46  Aligned_cols=84  Identities=11%  Similarity=0.097  Sum_probs=70.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      ++++|+++|++.+...+....++.++.|+++|+++.++.+++..+|.++++.+++.+    +|++.|+...+..++.++.
T Consensus       111 l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~  190 (1140)
T PRK06814        111 LFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLA  190 (1140)
T ss_pred             HHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999998876    8999985555555544445


Q ss_pred             Hhhcccch
Q psy168           78 ILFLPESP   85 (130)
Q Consensus        78 ~~~~pes~   85 (130)
                      .+++|+++
T Consensus       191 ~~~~~~~~  198 (1140)
T PRK06814        191 SLFIPKTG  198 (1140)
T ss_pred             HhhCCCCC
Confidence            55666553

>PRK11043 putative transporter; Provisional

Probab=98.65  E-value=2.3e-07  Score=66.37  Aligned_cols=84  Identities=11%  Similarity=-0.028  Sum_probs=66.0

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      +++.|++.|++.+...+....++.|++|+++++...+.......+|..+++.++...    +||+.+++.++...+..+.
T Consensus        97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  176 (401)
T PRK11043         97 LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP  176 (401)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            567899999998887777788999999999998888887777777777777776554    9999999887777776654


Q ss_pred             Hhhcccch
Q psy168           78 ILFLPESP   85 (130)
Q Consensus        78 ~~~~pes~   85 (130)
                      .++.+|++
T Consensus       177 ~~~~~~~~  184 (401)
T PRK11043        177 TLRLKPSK  184 (401)
T ss_pred             HHHcCCCC
Confidence            44555543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.65  E-value=2.4e-07  Score=66.08  Aligned_cols=85  Identities=14%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      +++.|++.|++.+...+....+..|.++.++++...+..+.+..+|..+++.++...    +||+.|++.++...+..+ 
T Consensus        99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652         99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence            567899999999887777778889999999999999999999998888888776654    899999988776665544 


Q ss_pred             HHhhcccchh
Q psy168           77 MILFLPESPT   86 (130)
Q Consensus        77 ~~~~~pes~~   86 (130)
                      ..++.||++.
T Consensus       179 ~~~~~~~~~~  188 (394)
T PRK11652        179 MARWMPETRP  188 (394)
T ss_pred             HHHhCCccCc
Confidence            5566788653

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.65  E-value=1.8e-07  Score=67.27  Aligned_cols=84  Identities=11%  Similarity=-0.009  Sum_probs=69.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      ++++|++.|++.+...+....++.|+.|+++|++..++.+....+|..+++.++..+    +|++.+++.++..++..+.
T Consensus       113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T PRK10489        113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP  192 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            457899999998887788888999999999999999999999999999998887655    8999998887766666555


Q ss_pred             Hhhcccch
Q psy168           78 ILFLPESP   85 (130)
Q Consensus        78 ~~~~pes~   85 (130)
                      .+..|+++
T Consensus       193 ~~~l~~~~  200 (417)
T PRK10489        193 LLRLPALP  200 (417)
T ss_pred             HHhCCCCC
Confidence            66677754

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.64  E-value=1.8e-07  Score=72.08  Aligned_cols=84  Identities=11%  Similarity=-0.024  Sum_probs=68.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFAMI   78 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~~~   78 (130)
                      +++.+++.|++.++..+....+++|++|.+.|++..++......+|.++++.+...+   +....|++.++..++..++.
T Consensus       651 ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~  730 (742)
T TIGR01299       651 MIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLA  730 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            345678888888888888999999999999999999999999999999999887654   44567777776666666666


Q ss_pred             hhcccch
Q psy168           79 LFLPESP   85 (130)
Q Consensus        79 ~~~pes~   85 (130)
                      .++|||.
T Consensus       731 ~~LPET~  737 (742)
T TIGR01299       731 LKLPDTR  737 (742)
T ss_pred             HhCCCCc
Confidence            6779874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.63  E-value=1.7e-07  Score=66.04  Aligned_cols=86  Identities=14%  Similarity=0.073  Sum_probs=64.3

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHH--HHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSL--TLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAF   75 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~   75 (130)
                      +++.|++.|.+.+...+....+..|+.|++.|+..  .+.......+|..+++.++...    +||+.|++.+++.++..
T Consensus        90 l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~  169 (375)
T TIGR00899        90 LLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCG  169 (375)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            45678999888887888888888898888777643  4666666777888887776544    89999999887766655


Q ss_pred             H-HHhhcccchhH
Q psy168           76 A-MILFLPESPTW   87 (130)
Q Consensus        76 ~-~~~~~pes~~~   87 (130)
                      + .+++.||.|+.
T Consensus       170 ~~~~~~~~~~~~~  182 (375)
T TIGR00899       170 VLVWLFLPSYPRG  182 (375)
T ss_pred             HHHHHhCCCcccC
Confidence            5 45567887653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.62  E-value=2.4e-07  Score=64.25  Aligned_cols=75  Identities=27%  Similarity=0.315  Sum_probs=66.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++++|++.|++.+...+....++.|+.|+++|++..+..+....+|..+++.+....    +||+.+++.+++.++..+
T Consensus        90 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (352)
T cd06174          90 LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL  168 (352)
T ss_pred             HHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999887766    799999887766665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.62  E-value=1.9e-07  Score=65.46  Aligned_cols=82  Identities=12%  Similarity=0.062  Sum_probs=63.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh-hh---hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA-IT---DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~---~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|++.|++.+..++....++.+++| ++|++..+....+..+|..+++.+.. ..   +||+.|++.++...+..+ 
T Consensus        94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  172 (377)
T TIGR00890        94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVL  172 (377)
T ss_pred             HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            5679999999999888888888889887 67999999999999888876554433 32   899999998887777655 


Q ss_pred             HHhhcccc
Q psy168           77 MILFLPES   84 (130)
Q Consensus        77 ~~~~~pes   84 (130)
                      .+++.++.
T Consensus       173 ~~~~~~~~  180 (377)
T TIGR00890       173 GAFLIGYP  180 (377)
T ss_pred             HHHheecC
Confidence            44444443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.61  E-value=2.9e-07  Score=67.62  Aligned_cols=79  Identities=15%  Similarity=0.255  Sum_probs=56.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHH----Hhhh---------hhhhHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIF----FLNA---------ITDWRTTTLISS   68 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~----~~~~---------~~~wr~~~~~~~   68 (130)
                      ++++|+++|++.+... ....+++|++|+++|++..++.+....+|..+++    .+..         ..+||+.|++.+
T Consensus       127 l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g  205 (476)
T PLN00028        127 FIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG  205 (476)
T ss_pred             HHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence            4678999999988653 4566889999999999999998765555554443    3321         127999999988


Q ss_pred             HHHHHHHHHHhhc
Q psy168           69 VVPILAFAMILFL   81 (130)
Q Consensus        69 ~~~~~~~~~~~~~   81 (130)
                      ++.++..+..+++
T Consensus       206 ~l~l~~~l~~~~~  218 (476)
T PLN00028        206 LLHIIMGILVLTL  218 (476)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777765533333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.59  E-value=6.9e-07  Score=64.10  Aligned_cols=84  Identities=15%  Similarity=0.066  Sum_probs=66.3

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~~   77 (130)
                      ++..++.+++.+...+....++.|+.|+++|++..++...+..+|.++++.+....     +||..|++.++...+..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902         98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            44556677777777788889999999999999999999998888888887764432     8999999988776665555


Q ss_pred             Hhhcccchh
Q psy168           78 ILFLPESPT   86 (130)
Q Consensus        78 ~~~~pes~~   86 (130)
                      .++.||++.
T Consensus       178 ~~~~~e~~~  186 (402)
T PRK11902        178 TLWAPEPEV  186 (402)
T ss_pred             HHhcCCCcc
Confidence            566777653

>PRK03699 putative transporter; Provisional

Probab=98.58  E-value=5.9e-07  Score=64.28  Aligned_cols=75  Identities=17%  Similarity=0.157  Sum_probs=61.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++++|+++|++.|...+....++.|++|+++|+...+..+....+|..+++.+....     +||+.|.+.+++.++..+
T Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~  177 (394)
T PRK03699         98 FSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI  177 (394)
T ss_pred             HHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            467899999999988888889999999999999999888888888777777664432     899999988777666544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.53  E-value=1.1e-07  Score=68.15  Aligned_cols=85  Identities=16%  Similarity=0.221  Sum_probs=73.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhh--hhh----hhHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLN--AIT----DWRTTTLISSVVPILAF   75 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~----~wr~~~~~~~~~~~~~~   75 (130)
                      +.+.-++.|++.|.-.|.....++.|+|+++||+..++++.+..+|..+.+++.  ...    +||..|++.++++++..
T Consensus       120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva  199 (448)
T COG2271         120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA  199 (448)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            455678889999999999999999999999999999999999999998888776  443    89999999999888877


Q ss_pred             H-HHhhcccchh
Q psy168           76 A-MILFLPESPT   86 (130)
Q Consensus        76 ~-~~~~~pes~~   86 (130)
                      + .++...++|+
T Consensus       200 l~~~~~~rd~Pq  211 (448)
T COG2271         200 LILLFLLRDRPQ  211 (448)
T ss_pred             HHHHHHhCCCcc
Confidence            6 6677777775

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.53  E-value=7.2e-07  Score=63.96  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=57.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILA   74 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~   74 (130)
                      ++++|+++|++.+...+....++.+++| ++|++..+.+..+...|..+++.+...+     +||+.+.+.++..++.
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999987 7899999999887777777777665543     7999877665554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.51  E-value=1.3e-06  Score=62.39  Aligned_cols=83  Identities=18%  Similarity=0.141  Sum_probs=65.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      +++.|++.|++.+ ..+....++.+..|+++|++..+.......+|..+++.+...+    +||+.+++.++..++..+ 
T Consensus       110 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  188 (408)
T PRK09874        110 FLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV  188 (408)
T ss_pred             HHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            5678999999865 4566777889999999999999999999899998888887654    899999988776666544 


Q ss_pred             HHhhcccch
Q psy168           77 MILFLPESP   85 (130)
Q Consensus        77 ~~~~~pes~   85 (130)
                      ..++.||.+
T Consensus       189 ~~~~~~~~~  197 (408)
T PRK09874        189 TLFCIRENF  197 (408)
T ss_pred             HHHHhccCc
Confidence            455566653

>TIGR00901 2A0125 AmpG-related permease

Probab=98.51  E-value=7.3e-07  Score=62.78  Aligned_cols=82  Identities=10%  Similarity=0.000  Sum_probs=64.4

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h--------hHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D--------WRTTTLISSVV   70 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~--------wr~~~~~~~~~   70 (130)
                      .+..++.|.+.+...+....++.|+.|+++|+...++.+.+..+|.++++.+....    +        ||..|++.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~  166 (356)
T TIGR00901        87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL  166 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence            34556667777777777788999999999999999999999999999998886544    6        99999998887


Q ss_pred             HHHHHHH-Hhhcccc
Q psy168           71 PILAFAM-ILFLPES   84 (130)
Q Consensus        71 ~~~~~~~-~~~~pes   84 (130)
                      .++..+. ++..||+
T Consensus       167 ~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       167 ILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHhccCC
Confidence            6665553 3345664

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.50  E-value=5.5e-07  Score=63.36  Aligned_cols=83  Identities=19%  Similarity=0.282  Sum_probs=56.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhh----hh----------hhhHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLN----AI----------TDWRTTTLI-   66 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~----------~~wr~~~~~-   66 (130)
                      ++++|++.|++.+ ..+....+++|++|+++|++..++...+..+|..+++.+.    ..          .+||+.+++ 
T Consensus        94 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~  172 (366)
T TIGR00886        94 LLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIV  172 (366)
T ss_pred             HHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHH
Confidence            5679999999865 4566788999999999999999998855555555544332    21          269999944 


Q ss_pred             HHHHHHHHH-HHHhhcccch
Q psy168           67 SSVVPILAF-AMILFLPESP   85 (130)
Q Consensus        67 ~~~~~~~~~-~~~~~~pes~   85 (130)
                      .++...+.. +.+.+.+|+|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       173 PAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             HHHHHHHHHHHHHHhcccCC
Confidence            344433333 3445566665

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.50  E-value=8.1e-07  Score=65.65  Aligned_cols=67  Identities=18%  Similarity=0.155  Sum_probs=56.7

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRI--RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSV   69 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~   69 (130)
                      +++|.++|++.|...+.....++|.+|+++  |+...+.+..+..+|..+++.++..+    +||+.|++..+
T Consensus       109 ~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        109 FIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             HHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            468999999999999999999999999874  46677888888888888888776665    99999998654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.46  E-value=7.9e-07  Score=66.88  Aligned_cols=74  Identities=16%  Similarity=0.182  Sum_probs=51.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++++-.+.|+|.|.... ....++|..|.|.|+....+..........+++.++..+    +|||.|++..+...+.++
T Consensus       134 ~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  134 FIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV  211 (599)
T ss_pred             HHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence            46678888999887654 456689999999998777665544444333444444333    899999998777666544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.44  E-value=9.8e-07  Score=70.62  Aligned_cols=86  Identities=13%  Similarity=0.020  Sum_probs=65.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--h-----------hHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--D-----------WRTTTLISS   68 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~-----------wr~~~~~~~   68 (130)
                      ++++|++.|++.+...+....+++|++|+++|++..++.+.+..+|.++++.++..+  .           |++.+.+..
T Consensus       106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  185 (1146)
T PRK08633        106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL  185 (1146)
T ss_pred             HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence            578999999999999999999999999999999999999999999999998886654  1           334443333


Q ss_pred             HHHHH-HHHHHhhcccchhH
Q psy168           69 VVPIL-AFAMILFLPESPTW   87 (130)
Q Consensus        69 ~~~~~-~~~~~~~~pes~~~   87 (130)
                      +...+ .++..+..||+|..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~  205 (1146)
T PRK08633        186 LAVAVLGLIFAYRLPKVPAA  205 (1146)
T ss_pred             HHHHHHHHHHHhcCcCCCCC
Confidence            33332 33345567887643

>KOG2615|consensus

Probab=98.43  E-value=5e-07  Score=64.28  Aligned_cols=83  Identities=17%  Similarity=0.121  Sum_probs=61.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-hhH-----HHH----HHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-DWR-----TTT----LISSVVPI   72 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~wr-----~~~----~~~~~~~~   72 (130)
                      .++|++.|+.-|- ..+.-++++|+.++|+|+..++.+.+.+++|.++||.++++. .+.     ..|    ++..+...
T Consensus       125 v~aR~l~Gi~kgn-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~  203 (451)
T KOG2615|consen  125 VLARFLGGIFKGN-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAA  203 (451)
T ss_pred             HHHHHhhhhccCc-hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHH
Confidence            4569999999994 577789999999999999999999999999999999998876 211     111    12223333


Q ss_pred             H-HHHHHhhcccchh
Q psy168           73 L-AFAMILFLPESPT   86 (130)
Q Consensus        73 ~-~~~~~~~~pes~~   86 (130)
                      . +.+..++.|||-.
T Consensus       204 ~~v~~~~~~lpETL~  218 (451)
T KOG2615|consen  204 GDVTFFPWFLPETLP  218 (451)
T ss_pred             HHHHHHHHhCCcccc
Confidence            3 3346678999843

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.43  E-value=1.8e-06  Score=62.46  Aligned_cols=75  Identities=19%  Similarity=0.169  Sum_probs=63.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------------------
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----------------------   58 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------   58 (130)
                      +++.|++.|++.|...+....++.++.|+++|++..++.+.+..+|..+++.+....                       
T Consensus        97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  176 (410)
T TIGR00885        97 FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSA  176 (410)
T ss_pred             HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHH
Confidence            567899999999999999999999999999999999999999999998888774422                       


Q ss_pred             -------hhHHHHHHHHHHHHHHHH
Q psy168           59 -------DWRTTTLISSVVPILAFA   76 (130)
Q Consensus        59 -------~wr~~~~~~~~~~~~~~~   76 (130)
                             +||+.|.+.+++.++..+
T Consensus       177 ~~~~~~~~w~~~fl~~a~~~~~~~~  201 (410)
T TIGR00885       177 IKHSDLASVQTPYMIIGAVVLAVAL  201 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   499999888776666544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.42  E-value=1e-06  Score=63.78  Aligned_cols=82  Identities=21%  Similarity=0.282  Sum_probs=66.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHH-HHHHhHHHHHHHhhhhh----------hhHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG-VSGNGGALGIFFLNAIT----------DWRTTTLISSVVP   71 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----------~wr~~~~~~~~~~   71 (130)
                      ++.+++.|++.+...+....+++|+.|++.|++..++.+ ...++|..+++.+++.+          +|+..|.+.++..
T Consensus       312 ~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~  391 (418)
T TIGR00889       312 FLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYI  391 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            457889999999888888899999999999999999997 67888998888887654          3899998877776


Q ss_pred             HHHHH-HHhhcccc
Q psy168           72 ILAFA-MILFLPES   84 (130)
Q Consensus        72 ~~~~~-~~~~~pes   84 (130)
                      ++..+ .+++.+|+
T Consensus       392 ~i~~~l~~~~~~~~  405 (418)
T TIGR00889       392 AILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHhCCc
Confidence            66555 66666776

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.37  E-value=5.9e-07  Score=65.67  Aligned_cols=74  Identities=14%  Similarity=0.059  Sum_probs=62.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAF   75 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~   75 (130)
                      +++.+++.|++.+...+.....+.|..|++++++..++++....+|..+++.+.+.+     +|++.|++.++..++..
T Consensus       336 ~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       336 LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence            356788999999988888889999999999999999999999999999999887754     58999988876655443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.37  E-value=1.6e-06  Score=63.39  Aligned_cols=72  Identities=21%  Similarity=0.199  Sum_probs=59.2

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      ..|++.|++.+...+....++.++++ ++|++..++.+.+..+|..+++.+...+    +||+.|++.+++.++..+
T Consensus       113 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v  188 (455)
T TIGR00892       113 TAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCV  188 (455)
T ss_pred             HHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            35789999998766777788889886 7899999999999999988888776654    899999998877665544

>PRK10133 L-fucose transporter; Provisional

Probab=98.32  E-value=4.3e-06  Score=60.96  Aligned_cols=54  Identities=17%  Similarity=0.191  Sum_probs=47.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLN   55 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~   55 (130)
                      ++++|+++|++.|...+....++.|+.+.++|...++..+..+.+|..+++.++
T Consensus       120 ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999988888887788899999999998888764

>KOG3764|consensus

Probab=98.32  E-value=6e-07  Score=64.20  Aligned_cols=78  Identities=21%  Similarity=0.189  Sum_probs=69.4

Q ss_pred             ChHHHHHHHHhhhhcccchhhhhhhhccCCcc-hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH
Q psy168            1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI-RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAF   75 (130)
Q Consensus         1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~   75 (130)
                      +++++|.++|+|.+...+.....+++.+|.++ |++.++....+.++|.+++|.++++.    |.+..|++.++..++-.
T Consensus       161 ~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~  240 (464)
T KOG3764|consen  161 MLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDG  240 (464)
T ss_pred             HHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHH
Confidence            36789999999999999999999999999965 79999999999999999999998877    99999999988877766


Q ss_pred             HHH
Q psy168           76 AMI   78 (130)
Q Consensus        76 ~~~   78 (130)
                      .+-
T Consensus       241 ~L~  243 (464)
T KOG3764|consen  241 ALQ  243 (464)
T ss_pred             HHH
Confidence            533

>PRK10054 putative transporter; Provisional

Probab=98.30  E-value=3.4e-06  Score=60.57  Aligned_cols=83  Identities=7%  Similarity=0.070  Sum_probs=66.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH-H
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFA-M   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~-~   77 (130)
                      ++++|++.|.+.+...+....+.+|..|+++|++..++......+|..+++.++..+   +|+..|++.++...+..+ .
T Consensus        99 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054         99 VVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence            345788888887877788889999999999999999999999999999998887765   899999987766665543 4


Q ss_pred             Hhhcccc
Q psy168           78 ILFLPES   84 (130)
Q Consensus        78 ~~~~pes   84 (130)
                      .++.|++
T Consensus       179 ~~~~~~~  185 (395)
T PRK10054        179 QIWVQRS  185 (395)
T ss_pred             HHHHhcc
Confidence            4445554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.29  E-value=4.6e-06  Score=61.44  Aligned_cols=75  Identities=19%  Similarity=0.180  Sum_probs=62.0

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcc---hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI---RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILA   74 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~   74 (130)
                      ++++|++.|++.|...+....+++|++|+++   |+...+++..+..+|..+++.+...+    +|++.|++.++..++.
T Consensus       105 ~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            4578999999999999999999999998764   88888999999999999998887765    8999999877544443


Q ss_pred             HH
Q psy168           75 FA   76 (130)
Q Consensus        75 ~~   76 (130)
                      .+
T Consensus       185 ~l  186 (475)
T TIGR00924       185 LL  186 (475)
T ss_pred             HH
Confidence            33

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00897 2A0118 polyol permease family

Probab=98.25  E-value=1.2e-05  Score=57.86  Aligned_cols=65  Identities=12%  Similarity=-0.097  Sum_probs=51.3

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHH-HHHHHhhhhh----hhHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGA-LGIFFLNAIT----DWRTTTLI   66 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~----~wr~~~~~   66 (130)
                      +++.|++.|++.+...+....++.+..|+++|++..++++.+..+|. .+++.++...    +|+..++.
T Consensus       108 l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       108 ILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             HHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            45789999999888777777888999999999999999999988886 5677665433    65544443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.24  E-value=8.3e-06  Score=58.29  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=63.0

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMI   78 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~   78 (130)
                      ++..++.|++.+...+.....+.|..|++.|++..++++....+|..+++.+.+..    +|+..+++.++..++..+..
T Consensus       306 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  385 (399)
T PRK05122        306 LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALT  385 (399)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            45688999999988887778888999999999999999999888887777665544    89999988877766655543


Q ss_pred             hhcc
Q psy168           79 LFLP   82 (130)
Q Consensus        79 ~~~p   82 (130)
                      ...+
T Consensus       386 ~~~~  389 (399)
T PRK05122        386 WLLY  389 (399)
T ss_pred             HHhc
Confidence            3333

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.22  E-value=9.8e-06  Score=58.07  Aligned_cols=82  Identities=13%  Similarity=0.009  Sum_probs=57.5

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcch--hHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIR--GSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      +.+.+.|...+...+....++.++.+++.|  +...+..+.+..+|..+++.++..+    +||..|+..++..++..+ 
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~  189 (393)
T PRK15011        110 FVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVM  189 (393)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            344444444445667777888888777655  3455777888888888888887655    999999988877766655 


Q ss_pred             HHhhcccch
Q psy168           77 MILFLPESP   85 (130)
Q Consensus        77 ~~~~~pes~   85 (130)
                      .+.+.||.+
T Consensus       190 ~~~~~~~~~  198 (393)
T PRK15011        190 VWLFLPSMR  198 (393)
T ss_pred             HHhhcCccC
Confidence            555678764

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.21  E-value=5.1e-06  Score=59.28  Aligned_cols=81  Identities=7%  Similarity=-0.170  Sum_probs=57.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      +++.|++.|++.+...+....++.++  .++|+...+.......+|..+++.++..+    +||..|+..++...+..+.
T Consensus        97 l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~  174 (382)
T PRK11128         97 LFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG  174 (382)
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence            45789999999888888877777776  34566666667777778888888887755    9999998777544444444


Q ss_pred             Hhhcccc
Q psy168           78 ILFLPES   84 (130)
Q Consensus        78 ~~~~pes   84 (130)
                      ....||.
T Consensus       175 ~~~~~~~  181 (382)
T PRK11128        175 QLLRPTI  181 (382)
T ss_pred             HHccCCC
Confidence            4445553

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.20  E-value=1.9e-05  Score=58.12  Aligned_cols=81  Identities=15%  Similarity=0.078  Sum_probs=56.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHH----HHHHHhhh------------------hhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGA----LGIFFLNA------------------ITD   59 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~----~~~~~~~~------------------~~~   59 (130)
                      +++.|++.|++ |+.++.....+++++|+++||+..++......+|.    ++.+.+..                  ..+
T Consensus       131 lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~  209 (462)
T PRK15034        131 FIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMS  209 (462)
T ss_pred             HHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Confidence            57889999998 77889999999999999999999999854444444    44443221                  114


Q ss_pred             hHHHHHHHHHHHHHHHH-HHhhccc
Q psy168           60 WRTTTLISSVVPILAFA-MILFLPE   83 (130)
Q Consensus        60 wr~~~~~~~~~~~~~~~-~~~~~pe   83 (130)
                      ||...++...+.++..+ .+++.++
T Consensus       210 ~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        210 LANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            77777777766666554 4444444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.19  E-value=1.2e-05  Score=59.70  Aligned_cols=72  Identities=17%  Similarity=0.179  Sum_probs=57.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI--RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL   73 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~   73 (130)
                      ++++|++.|++.|...+....+++|++|++.  |+...+++..+..+|..+++.+...+    +||+.|++.++...+
T Consensus       115 l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        115 VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            3567899999999888888899999998654  44566777888899999998887765    899999987654444

>KOG3626|consensus

Probab=98.19  E-value=1.5e-05  Score=61.03  Aligned_cols=84  Identities=18%  Similarity=0.243  Sum_probs=72.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------------------
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----------------------   58 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------   58 (130)
                      ++++.++.|+|..+.++....|+-|....++-+...++......+|.++|..++.+.                       
T Consensus       240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG  319 (735)
T KOG3626|consen  240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG  319 (735)
T ss_pred             HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence            567899999999999999999999999999999999999999999999998886653                       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccch
Q psy168           59 DWRTTTLISSVVPILAFAMILFLPESP   85 (130)
Q Consensus        59 ~wr~~~~~~~~~~~~~~~~~~~~pes~   85 (130)
                      .|..-|++.++..++..+.++++|...
T Consensus       320 AWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  320 AWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            577777788877777777777887664

>TIGR01272 gluP glucose/galactose transporter

Probab=98.18  E-value=1.6e-05  Score=55.56  Aligned_cols=82  Identities=16%  Similarity=0.118  Sum_probs=66.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh--------------------hhhH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI--------------------TDWR   61 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--------------------~~wr   61 (130)
                      ++++-|++|.|.+..++....|++++.+++++.+.+++.+.++++|.+++|.+...                    .+|+
T Consensus        13 ~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~   92 (310)
T TIGR01272        13 FLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVH   92 (310)
T ss_pred             HHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999988662                    1588


Q ss_pred             HHHHHHHHHHHHHHHHH--hhccc
Q psy168           62 TTTLISSVVPILAFAMI--LFLPE   83 (130)
Q Consensus        62 ~~~~~~~~~~~~~~~~~--~~~pe   83 (130)
                      +.|+..++...++.+.+  ...||
T Consensus        93 ~~yl~ia~~~~~~~i~~~~~~~p~  116 (310)
T TIGR01272        93 TPYLLLAGALAVLAIIFAFLPLPE  116 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCC
Confidence            88886655544444433  33455

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.15  E-value=1.9e-05  Score=56.57  Aligned_cols=80  Identities=19%  Similarity=0.151  Sum_probs=62.3

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMI   78 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~   78 (130)
                      ++.+++.+++.|...+....+..|..|. +|++..++++....+|..+++.+.+.+    +|+..+++..++.++..+..
T Consensus       309 l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK15011        309 LGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL  387 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            4567777777777667777888998886 589999998888888888888887765    89999988877777766665


Q ss_pred             hhccc
Q psy168           79 LFLPE   83 (130)
Q Consensus        79 ~~~pe   83 (130)
                      ++.||
T Consensus       388 ~~~~~  392 (393)
T PRK15011        388 LRIKD  392 (393)
T ss_pred             HhhcC
Confidence            55554

>TIGR00896 CynX cyanate transporter

Probab=98.13  E-value=2.4e-05  Score=55.17  Aligned_cols=70  Identities=17%  Similarity=0.211  Sum_probs=55.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------DWRTTTLISSVVPI   72 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~   72 (130)
                      +++.|++.|++.+...+....++.|++| ++|++..+.++....+|..+++.+....      +||+.|...++...
T Consensus        90 l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        90 LFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            4678999999999888888888899886 6899999999988888888877665433      39988877655433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.12  E-value=4.2e-07  Score=67.85  Aligned_cols=84  Identities=17%  Similarity=0.269  Sum_probs=3.0

Q ss_pred             ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----------------------
Q psy168            1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----------------------   58 (130)
Q Consensus         1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------------------   58 (130)
                      +++++.++.|+|..+.+++..+|+-|..+++.-+...+++.....+|..+|.++++..                      
T Consensus       143 ~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp  222 (539)
T PF03137_consen  143 VFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDP  222 (539)
T ss_dssp             ---------SSS--------------------------------------------------------------------
T ss_pred             HHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCc
Confidence            3678999999999999999999999999999999999999999999998888776532                      


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHhhcccc
Q psy168           59 ----DWRTTTLISSVVPILAFAMILFLPES   84 (130)
Q Consensus        59 ----~wr~~~~~~~~~~~~~~~~~~~~pes   84 (130)
                          .|..-|.+.++..++..+.++++|..
T Consensus       223 ~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  223 RWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             ------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence                36666666666666666666666765

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.12  E-value=1.7e-05  Score=54.92  Aligned_cols=77  Identities=23%  Similarity=0.394  Sum_probs=67.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      +.+..++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.+..    +|+..+++.+++.++..+.
T Consensus       268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~  347 (352)
T cd06174         268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL  347 (352)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999887655    8999999988877776654


Q ss_pred             H
Q psy168           78 I   78 (130)
Q Consensus        78 ~   78 (130)
                      .
T Consensus       348 ~  348 (352)
T cd06174         348 L  348 (352)
T ss_pred             h
Confidence            3

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.07  E-value=6.4e-05  Score=54.97  Aligned_cols=68  Identities=18%  Similarity=0.095  Sum_probs=50.2

Q ss_pred             chhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh----------hhhhHHHHHHHHHHHHHHHH-HHhhcccch
Q psy168           18 GPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA----------ITDWRTTTLISSVVPILAFA-MILFLPESP   85 (130)
Q Consensus        18 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----------~~~wr~~~~~~~~~~~~~~~-~~~~~pes~   85 (130)
                      +....+++|.+|++.|++..++.+....+|..+++.+..          ..+|++.|++.++..++.++ .+++.||+.
T Consensus       383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence            567789999999999999999988888777777643322          12678888887766666555 555677763

>PRK12382 putative transporter; Provisional

Probab=98.03  E-value=4e-05  Score=54.74  Aligned_cols=74  Identities=14%  Similarity=0.075  Sum_probs=61.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      +++.++.|++.+...+.....+.|..|+++|++..++++....+|..+++.+....    +|+..|.+.++..++..+
T Consensus       306 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  383 (392)
T PRK12382        306 LAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGII  383 (392)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            45778889998887787778889999999999999999999999999988876655    899999988776665544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.03  E-value=3.3e-05  Score=55.59  Aligned_cols=85  Identities=16%  Similarity=0.119  Sum_probs=63.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHH---HHHHhHHHHHHHhhhhhh---hHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG---VSGNGGALGIFFLNAITD---WRTTTLISSVVPILAF   75 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~---~~~~~g~~~~~~~~~~~~---wr~~~~~~~~~~~~~~   75 (130)
                      +++++++.|++-+ .+..+..+++.++|++.+|.+.+++.   ++..+...++|.+....+   |+....+......+..
T Consensus       108 ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~  186 (417)
T COG2223         108 LLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAA  186 (417)
T ss_pred             HHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            6788999999866 67889999999999999999999985   333344444454444446   9998888777766655


Q ss_pred             H-HHhhcccchhH
Q psy168           76 A-MILFLPESPTW   87 (130)
Q Consensus        76 ~-~~~~~pes~~~   87 (130)
                      + .++...+.|..
T Consensus       187 v~~~~~~~d~p~~  199 (417)
T COG2223         187 VLAWLGMNDVPEH  199 (417)
T ss_pred             HHHHHHhCCChhh
Confidence            5 66677776654

>TIGR00898 2A0119 cation transport protein

Probab=98.00  E-value=3e-05  Score=57.16  Aligned_cols=81  Identities=17%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHhhcc
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--DWRTTTLISSVVPILAFAMILFLP   82 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~wr~~~~~~~~~~~~~~~~~~~~p   82 (130)
                      .-++.+++.+..++....+.+|.+|.+.|++..++.+....+|.++++.+....  ++...+++.++..++..+...++|
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp  495 (505)
T TIGR00898       416 LAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLP  495 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc
Confidence            345566667777788889999999999999999999999999999999887633  556677777766666666667788


Q ss_pred             cch
Q psy168           83 ESP   85 (130)
Q Consensus        83 es~   85 (130)
                      |+.
T Consensus       496 et~  498 (505)
T TIGR00898       496 ETK  498 (505)
T ss_pred             CCC
Confidence            874

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.96  E-value=2.5e-05  Score=55.76  Aligned_cols=67  Identities=7%  Similarity=-0.191  Sum_probs=53.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVV   70 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~   70 (130)
                      +++.|.+.|.+.+...+....+..++  .++|++..+......++|..+++.+...+    +||..|+...+.
T Consensus        97 l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902        97 LFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            45789999999888888888887664  46788888888888888999988876655    999998887654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.96  E-value=3.3e-05  Score=54.16  Aligned_cols=70  Identities=6%  Similarity=-0.049  Sum_probs=58.8

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL   73 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~   73 (130)
                      +..++.|++.|...+..+.+++|..|+++|++..++.+....+|..+++.+.+..    +|++.|.+.++..++
T Consensus       300 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       300 ATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT  373 (377)
T ss_pred             HHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence            4567888888888888888999999999999999999999999999999876654    899888887655444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.95  E-value=6.1e-05  Score=53.71  Aligned_cols=57  Identities=19%  Similarity=-0.020  Sum_probs=51.0

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      ++++|++.|++.+...+.....+.+..++++|++..+.+..+..+|..+++.+...+
T Consensus        97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         97 WLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            578999999999988888878888899999999999999999999999999887765

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.91  E-value=8e-05  Score=52.53  Aligned_cols=79  Identities=20%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMI   78 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~   78 (130)
                      .+.+++.|++.|...+....++.|..|.+ ++...++++....+|..+++.+.+..    +|+..++..++..++..+..
T Consensus       292 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       292 LMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            45677889888888888888899988764 56889998888889999888876654    89999988887766655544


Q ss_pred             hhcc
Q psy168           79 LFLP   82 (130)
Q Consensus        79 ~~~p   82 (130)
                      .+.+
T Consensus       371 ~~~~  374 (375)
T TIGR00899       371 LLIK  374 (375)
T ss_pred             heec
Confidence            4433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.91  E-value=3.3e-05  Score=55.16  Aligned_cols=75  Identities=16%  Similarity=0.149  Sum_probs=63.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      +++.+++.|++.+...+.....+.+..|++.||+..+.++....+|..+++.+.+.+    +|+..|++.++..++..+
T Consensus       314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~  392 (408)
T PRK09874        314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAV  392 (408)
T ss_pred             HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            356788999999998888888889999999999999999888899999998887755    899999988877666555

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.87  E-value=4.6e-05  Score=54.97  Aligned_cols=70  Identities=13%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HHhhcccch
Q psy168           16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-MILFLPESP   85 (130)
Q Consensus        16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~~~~~pes~   85 (130)
                      ..+....+++|..|++.|++..++.+....+|..+++.+...+    +|++.|++.++.+++..+ .+++.||+.
T Consensus       400 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       400 WGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             ccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence            3456667789999999999999999999999999998876654    799888888777766655 445567653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.83  E-value=4.6e-05  Score=55.03  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=57.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      +++.+++.|++.+...+....+++|..|++.|++..+. ++....+|..+++.+.+.+    ||+..|...++..++..+
T Consensus       318 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~  397 (420)
T PRK09528        318 VSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTL  397 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence            35678888888887777778899999999999877554 5677778888888776655    899999987766665444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.79  E-value=0.0002  Score=51.73  Aligned_cols=83  Identities=19%  Similarity=0.280  Sum_probs=58.3

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhcc-CCcchhHHHHHHHHHHHhHHHHHHHhhh-----------hhhhHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVC-EPRIRGSLTLLSGVSGNGGALGIFFLNA-----------ITDWRTTTLISSVV   70 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-----------~~~wr~~~~~~~~~   70 (130)
                      ++.+++.+++.+...+....+.+|+. ++++|++..++.+.+..+|..++..+..           ..+||+.+++.+++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l  182 (437)
T TIGR00792       103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI  182 (437)
T ss_pred             HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence            44667777777766666667788887 5689999999887777777655543311           12799999988877


Q ss_pred             HHHHHH-HHhhcccch
Q psy168           71 PILAFA-MILFLPESP   85 (130)
Q Consensus        71 ~~~~~~-~~~~~pes~   85 (130)
                      .++..+ .++..+|.+
T Consensus       183 ~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       183 GVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHcCCEecC
Confidence            777655 556677764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.77  E-value=0.00012  Score=53.97  Aligned_cols=75  Identities=13%  Similarity=0.040  Sum_probs=63.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      +.+..++.|+|+....|....++++..|++.||...+++..+..+|..++..+....    +|...|...++..++..+
T Consensus       384 ~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (475)
T TIGR00924       384 MVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGV  462 (475)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence            466788999999999999999999999999999999999999999999998876644    677777766655555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.73  E-value=0.00016  Score=52.08  Aligned_cols=82  Identities=13%  Similarity=-0.027  Sum_probs=61.1

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-H
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-M   77 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~   77 (130)
                      .++.++.|++.+...+....++.|..|++.|++..+++.....+|..+++.+.+.+    +.+..+...++...+..+ .
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            45677788888877777778899999999999999999888888888888887665    566666665554444433 4


Q ss_pred             Hhhcccc
Q psy168           78 ILFLPES   84 (130)
Q Consensus        78 ~~~~pes   84 (130)
                      ....++.
T Consensus       396 ~~~~~~~  402 (417)
T PRK10489        396 LLVLGEL  402 (417)
T ss_pred             HHhcccc
Confidence            4555654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.72  E-value=0.00021  Score=51.22  Aligned_cols=73  Identities=14%  Similarity=-0.021  Sum_probs=55.9

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      +.-++.|++.++..+....++.|..|++.|++..++.+....+|..+++.+.+.+     +|...++......+...+
T Consensus       313 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  390 (406)
T PRK11551        313 LAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAAL  390 (406)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHH
Confidence            4456677777777788888999999999999999999999999999999887765     455556555444444333

>PRK09952 shikimate transporter; Provisional

Probab=97.71  E-value=0.00029  Score=51.33  Aligned_cols=80  Identities=11%  Similarity=0.091  Sum_probs=55.7

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHH-HHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHH
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLS-GVSGNGGALGIFFLNAIT------DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~~~~~   77 (130)
                      +-++.|++.+...+....+++|.+|.+.|++..++. +.+..+|..++|.+...+      +|+..+....+..++..+.
T Consensus       349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~  428 (438)
T PRK09952        349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            345557777777777888999999999999888874 454556766676665443      4777777776666665555


Q ss_pred             Hhhcccc
Q psy168           78 ILFLPES   84 (130)
Q Consensus        78 ~~~~pes   84 (130)
                      .+..+|+
T Consensus       429 ~~~~~~~  435 (438)
T PRK09952        429 ALLMKDN  435 (438)
T ss_pred             HHHcccc
Confidence            5555654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.70  E-value=0.00037  Score=50.98  Aligned_cols=71  Identities=18%  Similarity=0.088  Sum_probs=46.7

Q ss_pred             HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHH-HHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGAL-GIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      -++.|.+..+.......+..|..|++.||+..++.+....+|.. .++.+.+..    +|+..|++.++.+++..+
T Consensus       354 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~  429 (452)
T PRK11273        354 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI  429 (452)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            33444433322233345677999999999999998777666644 456554433    899999887776666554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.70  E-value=0.00021  Score=53.17  Aligned_cols=55  Identities=13%  Similarity=0.103  Sum_probs=49.0

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA   56 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~   56 (130)
                      +....++.|++++...|+...++.+..|++.||..++.+.+...+|..++..+..
T Consensus       385 ~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        385 LIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999888888888766653

>KOG2325|consensus

Probab=97.68  E-value=0.00012  Score=54.08  Aligned_cols=84  Identities=13%  Similarity=0.173  Sum_probs=61.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------h-----------hHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------D-----------WRTTT   64 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~-----------wr~~~   64 (130)
                      ++++|++.|+|.|. ....=.|+++.+..+.|.++.+....+..+|..+||.++..+      |           +...-
T Consensus       133 mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~  211 (488)
T KOG2325|consen  133 MLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPA  211 (488)
T ss_pred             HHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHH
Confidence            68899999999985 456678999999999999999998888888888888775544      1           22344


Q ss_pred             HHHHHHHHHHHH-HHhhcccchh
Q psy168           65 LISSVVPILAFA-MILFLPESPT   86 (130)
Q Consensus        65 ~~~~~~~~~~~~-~~~~~pes~~   86 (130)
                      |+.++..++..+ ..+++.|..+
T Consensus       212 w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  212 WLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHHHHHHHHHHHHhheeeccc
Confidence            566666666555 5566666543

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.66  E-value=0.00038  Score=48.92  Aligned_cols=64  Identities=9%  Similarity=-0.005  Sum_probs=52.6

Q ss_pred             hhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h-hHHHHHHHHHHHHHHHH
Q psy168           13 MGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D-WRTTTLISSVVPILAFA   76 (130)
Q Consensus        13 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-wr~~~~~~~~~~~~~~~   76 (130)
                      ..+..+....+++|..|++.|++..++.+....+|..+++.+.+.+    + |+..+++.++..++..+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  393 (399)
T TIGR00893       325 GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGAL  393 (399)
T ss_pred             chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHH
Confidence            3336788889999999999999999999999999999998887655    5 99888887766665544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.64  E-value=0.00041  Score=49.47  Aligned_cols=73  Identities=15%  Similarity=-0.030  Sum_probs=58.1

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      .+.++.|++.+...+....++.|..|+++++...+.++....+|..+++.+.+..    +|++.|.+.+...+....
T Consensus       290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        290 PALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            4567788877777888888899999998888888888888889999999887765    788888887766655444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.62  E-value=0.00042  Score=51.56  Aligned_cols=65  Identities=23%  Similarity=0.304  Sum_probs=50.7

Q ss_pred             HHHhhhhcccchhhhhhhhccCCc--chhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHH
Q psy168            8 MLGAGMGFCEGPIMSYLGEVCEPR--IRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPI   72 (130)
Q Consensus         8 l~G~~~g~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~   72 (130)
                      +.+++.|...+....+++|.+|++  +|....+++.....+|..+++.+...+    +|++.|.+.++..+
T Consensus       109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~  179 (493)
T PRK15462        109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI  179 (493)
T ss_pred             HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence            444566666676778999999986  788888888888888999998887765    89999998665333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.48  E-value=0.00082  Score=48.15  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=51.4

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH-HHh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFA-MIL   79 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~-~~~   79 (130)
                      +.|++.|++.+...+....++.+..+.  ++...+.......+|..+++.++...   +||+.|++.++..++..+ .+.
T Consensus       104 ~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       104 VGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             HHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777777665433  23333444555566777777665544   999999998877777655 333


Q ss_pred             hcccch
Q psy168           80 FLPESP   85 (130)
Q Consensus        80 ~~pes~   85 (130)
                      ..||+|
T Consensus       182 ~~~~~~  187 (396)
T TIGR00882       182 AKPKAP  187 (396)
T ss_pred             hCCCCc
Confidence            345543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.46  E-value=0.0012  Score=49.01  Aligned_cols=70  Identities=23%  Similarity=0.226  Sum_probs=51.1

Q ss_pred             ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-h-------------hHHHHHHHHHHHHHHHHHHhhc
Q psy168           16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-D-------------WRTTTLISSVVPILAFAMILFL   81 (130)
Q Consensus        16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~-------------wr~~~~~~~~~~~~~~~~~~~~   81 (130)
                      ..++...+.+|.+|.+.|++..++.+....+|.++++.+.... +             +...+++.++..++..+..+++
T Consensus       409 ~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~l  488 (502)
T TIGR00887       409 PNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLI  488 (502)
T ss_pred             CCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEe
Confidence            3456667889999999999999999988888888887664433 1             2445666666666555555677


Q ss_pred             ccch
Q psy168           82 PESP   85 (130)
Q Consensus        82 pes~   85 (130)
                      ||+.
T Consensus       489 pEt~  492 (502)
T TIGR00887       489 PETK  492 (502)
T ss_pred             ccCC
Confidence            9974

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.46  E-value=0.0019  Score=46.16  Aligned_cols=71  Identities=14%  Similarity=0.040  Sum_probs=48.2

Q ss_pred             hhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHhhcc
Q psy168           12 GMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI----TDWRTTTLISSVVPILAFAMILFLP   82 (130)
Q Consensus        12 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~~wr~~~~~~~~~~~~~~~~~~~~p   82 (130)
                      ..+..-+..-.+..|..+.++++...+....+..+|..++......    .+||..|++.++...+..+...+.+
T Consensus       110 ~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       110 ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3333334444466777888888888777777778888888755433    3999999999887776555333443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.45  E-value=0.00062  Score=49.54  Aligned_cols=58  Identities=17%  Similarity=0.074  Sum_probs=47.3

Q ss_pred             hhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168           19 PIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus        19 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      ....+++|..|++.|++..++.+....+|..+++.+.+.+    +|+..|+..++..++..+
T Consensus       357 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~  418 (434)
T PRK11663        357 LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISAL  418 (434)
T ss_pred             HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            3345678999999999999999999999999998776655    799998887777666554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.36  E-value=0.0016  Score=47.26  Aligned_cols=71  Identities=17%  Similarity=0.331  Sum_probs=54.7

Q ss_pred             HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHH-HHHhHHHHHHHhhhhh----------hhHHHHHHHHHHHHHH
Q psy168            6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGV-SGNGGALGIFFLNAIT----------DWRTTTLISSVVPILA   74 (130)
Q Consensus         6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~----------~wr~~~~~~~~~~~~~   74 (130)
                      -.+.|+..|.....+..|+.+..|++.|++..+++.. ..++|..++..+++.+          +|...+.+.++...+.
T Consensus       308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~  387 (400)
T PF03825_consen  308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVI  387 (400)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence            3457898998999999999999999999999999755 5678888888887765          4555555565555554


Q ss_pred             HH
Q psy168           75 FA   76 (130)
Q Consensus        75 ~~   76 (130)
                      .+
T Consensus       388 ~~  389 (400)
T PF03825_consen  388 LV  389 (400)
T ss_pred             HH
Confidence            44

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.35  E-value=0.0011  Score=48.73  Aligned_cols=74  Identities=15%  Similarity=-0.046  Sum_probs=48.3

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHh-HHHHHHHhhhh----------------hhhHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNG-GALGIFFLNAI----------------TDWRTTTL   65 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~----------------~~wr~~~~   65 (130)
                      .+++++.|++..+........+.|..|++.||+..++.+....+ |..+++.+.+.                .+|+..|+
T Consensus       353 ~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~  432 (467)
T PRK09556        353 LASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFA  432 (467)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHH
Confidence            35667777654433333346777999999999999999777664 54554443221                25898888


Q ss_pred             HHHHHHHHHHH
Q psy168           66 ISSVVPILAFA   76 (130)
Q Consensus        66 ~~~~~~~~~~~   76 (130)
                      +..+..++..+
T Consensus       433 ~~~~~~~~~~~  443 (467)
T PRK09556        433 ALDIAAIGCIC  443 (467)
T ss_pred             HHHHHHHHHHH
Confidence            77555555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.30  E-value=0.0017  Score=46.61  Aligned_cols=79  Identities=14%  Similarity=0.084  Sum_probs=59.1

Q ss_pred             HHHHhhhhcccchhhhhhhhccC-CcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH-HHh
Q psy168            7 IMLGAGMGFCEGPIMSYLGEVCE-PRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA-MIL   79 (130)
Q Consensus         7 ~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~-~~~   79 (130)
                      ++.|++.+...+.......+..+ ++++++..++.+....++..+++.+.+..     +|...+++.++...+..+ ...
T Consensus       300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK09705        300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR  379 (393)
T ss_pred             HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            46678888777776666666664 67899999998888888888888776655     477888887766666555 567


Q ss_pred             hcccch
Q psy168           80 FLPESP   85 (130)
Q Consensus        80 ~~pes~   85 (130)
                      +.||++
T Consensus       380 ~~~~~~  385 (393)
T PRK09705        380 FAPARF  385 (393)
T ss_pred             hccccc
Confidence            778875

>PRK03545 putative arabinose transporter; Provisional

Probab=97.22  E-value=0.0047  Score=44.20  Aligned_cols=73  Identities=10%  Similarity=-0.017  Sum_probs=55.5

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      .++-++.|++.+...+....++.+..| +.|++..+++.....+|..+|+.+.+..    +++..+++.++..++..+
T Consensus       298 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~  374 (390)
T PRK03545        298 SVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALV  374 (390)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence            345667788877666666777788766 6889999988888888888888886655    889999888766665444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.19  E-value=0.00054  Score=48.29  Aligned_cols=68  Identities=18%  Similarity=0.181  Sum_probs=51.5

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----h-hHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----D-WRTTTLISSVV   70 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~-wr~~~~~~~~~   70 (130)
                      ++..++.|++.+...+....+++|..|++.|++..++ ++....+|..+++.+.+..    + |++.++...+.
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            3456778888888888889999999999999998887 4666677777777776554    4 77776665543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.16  E-value=0.0024  Score=51.65  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=57.5

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH-
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~-   76 (130)
                      +++-++.|++.+...+....++.+..|++.||+..++.+....+|..+++.++...     ++...+++.+.+.++..+ 
T Consensus       326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  405 (1146)
T PRK08633        326 LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLY  405 (1146)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            45678889999888888889999999999999999999888888887766665543     344555554444333322 


Q ss_pred             HHhhcccc
Q psy168           77 MILFLPES   84 (130)
Q Consensus        77 ~~~~~pes   84 (130)
                      .....|++
T Consensus       406 ~~~~~~~~  413 (1146)
T PRK08633        406 TLLLLPDS  413 (1146)
T ss_pred             HHHHhHHH
Confidence            33334443

>KOG0569|consensus

Probab=97.12  E-value=0.011  Score=44.03  Aligned_cols=75  Identities=9%  Similarity=-0.003  Sum_probs=51.8

Q ss_pred             HHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--hhH-HHHHHHHHHHHHHHH-HHhhcccc
Q psy168            9 LGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--DWR-TTTLISSVVPILAFA-MILFLPES   84 (130)
Q Consensus         9 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~wr-~~~~~~~~~~~~~~~-~~~~~pes   84 (130)
                      .+++.| ..|+.+.+.+|.+|.+.|..+.++.....-++.++....-..+  .|- +.|++..+++.+..+ .++.+|||
T Consensus       379 ~~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  379 ISFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HhhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCccc
Confidence            344445 4678888999999999999999987666555555443332222  121 666677777777666 88999998

>TIGR00897 2A0118 polyol permease family

Probab=97.09  E-value=0.0054  Score=44.18  Aligned_cols=71  Identities=10%  Similarity=-0.002  Sum_probs=53.1

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      +..++.|++.+...+. ...++|..| ++|++..++.+....+|..++|.+....    +|...+++.++...+..+
T Consensus       321 ~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~  395 (402)
T TIGR00897       321 IIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAF  395 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            4567778777765443 455677655 5899999999999999999999876655    888888887766655444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.09  E-value=0.0034  Score=46.62  Aligned_cols=74  Identities=14%  Similarity=0.154  Sum_probs=55.0

Q ss_pred             hhhcccchhhhhhhhccCCcch--hHHHHHHHHHHHhHHHHHHHhhhhh-------------------hhHHHHHHHHHH
Q psy168           12 GMGFCEGPIMSYLGEVCEPRIR--GSLTLLSGVSGNGGALGIFFLNAIT-------------------DWRTTTLISSVV   70 (130)
Q Consensus        12 ~~g~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~-------------------~wr~~~~~~~~~   70 (130)
                      +.....+..-++++|..|+++|  +.+.++.+.+..+|.++++.++++.                   +.|..|++.++.
T Consensus       127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~  206 (477)
T TIGR01301       127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL  206 (477)
T ss_pred             HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence            5666666677899999999866  5688888888888998888876543                   456778887766


Q ss_pred             HHHHHH-HHhhcccch
Q psy168           71 PILAFA-MILFLPESP   85 (130)
Q Consensus        71 ~~~~~~-~~~~~pes~   85 (130)
                      .++... ..+..+|.|
T Consensus       207 l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       207 LAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHeeeeeccC
Confidence            666544 667778876

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2504|consensus

Probab=97.08  E-value=0.0007  Score=50.58  Aligned_cols=79  Identities=22%  Similarity=0.206  Sum_probs=62.9

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HHh
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-MIL   79 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~~~   79 (130)
                      .=++.|+|.|..+..+.+.+. .+..++|+.+.++...+.++|.++-+.+...+    |||+.+++.+.+.+...+ ...
T Consensus       141 ~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~  219 (509)
T KOG2504|consen  141 FGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGAL  219 (509)
T ss_pred             HHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            346788999988888878888 57888999999999999999999888887766    999999987776666554 555


Q ss_pred             hcccc
Q psy168           80 FLPES   84 (130)
Q Consensus        80 ~~pes   84 (130)
                      ..|.+
T Consensus       220 ~rp~~  224 (509)
T KOG2504|consen  220 LRPLS  224 (509)
T ss_pred             cCCCC
Confidence            55533

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.08  E-value=0.0024  Score=47.05  Aligned_cols=64  Identities=16%  Similarity=-0.002  Sum_probs=47.3

Q ss_pred             HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHH
Q psy168            6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSV   69 (130)
Q Consensus         6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~   69 (130)
                      .++.|....+..+..+.+++|.+|++.|++..++++....+|..+++.+.+.+    +|+..+...+.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~  440 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF  440 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence            33333333334556677889999999999999999888889999998887765    77777655443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.07  E-value=0.0011  Score=48.22  Aligned_cols=63  Identities=17%  Similarity=0.215  Sum_probs=44.6

Q ss_pred             hhhhhccCCcchhHHHHHHHHHHHhH-HHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HHhhcccc
Q psy168           22 SYLGEVCEPRIRGSLTLLSGVSGNGG-ALGIFFLNAIT----DWRTTTLISSVVPILAFA-MILFLPES   84 (130)
Q Consensus        22 ~~~~e~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~~~~~pes   84 (130)
                      ....|.+|++.|+...++.+....+| ..+++.+.+..    +|...+++..+..++..+ .+..+||.
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45679999999999999987766655 45676665543    788888876665555444 55666664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00788 fbt folate/biopterin transporter

Probab=97.05  E-value=0.0014  Score=48.43  Aligned_cols=80  Identities=14%  Similarity=-0.007  Sum_probs=58.4

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHH---HhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSG---NGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~---~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      +..++.+++.+..-..+-.++.|..+ +++....+.....+   ..|.++++.+++..    +|+..|++.++...+..+
T Consensus       125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF  203 (468)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            36788899988888888899999988 55554443433333   36777777776654    899999998877777755


Q ss_pred             HHhhcccc
Q psy168           77 MILFLPES   84 (130)
Q Consensus        77 ~~~~~pes   84 (130)
                      ...+.+|.
T Consensus       204 ~~~~~~E~  211 (468)
T TIGR00788       204 VSNLSKER  211 (468)
T ss_pred             HHHhcccc
Confidence            66777875

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.03  E-value=0.0023  Score=46.13  Aligned_cols=55  Identities=15%  Similarity=0.022  Sum_probs=47.1

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      +..++.|++.+...+....++.+..|++.||+..++++....+|..+++.+.+..
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence            3456677888777788888999999999999999999999999999999887765

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.03  E-value=0.0047  Score=45.91  Aligned_cols=82  Identities=15%  Similarity=0.189  Sum_probs=64.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      +.+.=++.|++.|+.++.+=++.+|+.|+++.+..-+++.+..-.+..+||.+-+.+     +-|+.+....++.++.++
T Consensus       383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~  462 (477)
T PF11700_consen  383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLI  462 (477)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            345567899999999999999999999999999999999999999999999886655     466766666555555555


Q ss_pred             HHhhccc
Q psy168           77 MILFLPE   83 (130)
Q Consensus        77 ~~~~~pe   83 (130)
                      ++..++.
T Consensus       463 ll~~v~~  469 (477)
T PF11700_consen  463 LLFFVDV  469 (477)
T ss_pred             HHhhccc
Confidence            4444443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.00  E-value=0.0022  Score=45.52  Aligned_cols=55  Identities=20%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      ++.++.|++.++..+....+++|..|++.|++..++.+....+|..+++.+.+.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l  387 (405)
T TIGR00891       333 LGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL  387 (405)
T ss_pred             HHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3446667777777778888999999999999999999888899999999887766

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=96.98  E-value=0.006  Score=43.64  Aligned_cols=70  Identities=14%  Similarity=0.129  Sum_probs=54.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHH-HHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG-VSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL   73 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~   73 (130)
                      +++.+++.|+..|...+....++++. |++.|++..++++ ...++|..+++.+++.+    ++ ..|...++..++
T Consensus       296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~  370 (382)
T TIGR00902       296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAA  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            45678999999999999999999998 9999999999875 56788888888887766    44 344554444443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.98  E-value=0.0043  Score=44.45  Aligned_cols=71  Identities=15%  Similarity=0.236  Sum_probs=51.9

Q ss_pred             HHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHH
Q psy168            7 IMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         7 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~wr~~~~~~~~~~~~~~~~   77 (130)
                      ++.|++.....+....+.+|.+|++.|++..++.+....+|..+++.+....  +-+..|.+.+++.++..+.
T Consensus       288 ~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~  360 (368)
T TIGR00903       288 GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAI  360 (368)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            4556666666666778999999999999999999998888887777665433  5556666666665555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.97  E-value=0.0037  Score=50.77  Aligned_cols=68  Identities=16%  Similarity=0.136  Sum_probs=53.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVV   70 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~   70 (130)
                      +++-++.|++.+...+...+++.+..|++.||+..+..++...+|..+++.+...+     +....+++.++.
T Consensus       338 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        338 LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34567889999988888899999999999999999999999998888888775544     455555544433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=96.96  E-value=0.0011  Score=46.54  Aligned_cols=55  Identities=13%  Similarity=-0.056  Sum_probs=43.4

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      +.-++.|+...+..+....+++|..|++.|++..++.+....+|..+++.+.+.+
T Consensus       315 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  369 (379)
T TIGR00881       315 ICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYL  369 (379)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence            3445666655555566667889999999999999999999999998888776554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.92  E-value=0.0067  Score=43.96  Aligned_cols=57  Identities=19%  Similarity=0.214  Sum_probs=51.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      ++++-|+.|.|.|...+.+..|++...++++-...+++.|.+.++|.+++|.++...
T Consensus       107 FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738         107 FLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             HHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            456778999999999999999999999999999999999999999999999886543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.90  E-value=0.014  Score=42.30  Aligned_cols=55  Identities=13%  Similarity=0.113  Sum_probs=49.0

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      ++-.+.|++.+...+...+.++|..|+++|++..++.-++...|.+++.+..+..
T Consensus        94 l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l  148 (403)
T PF03209_consen   94 LAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL  148 (403)
T ss_pred             HHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667899999999999999999999999999999999999999999998876644

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.82  E-value=0.0096  Score=44.80  Aligned_cols=75  Identities=19%  Similarity=0.163  Sum_probs=61.3

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      +++.-++.|++.+...|.-.+.+.|+.|+++...+.++.++...++.++||.+++.+    |-.+.|.+.++..++..+
T Consensus       106 Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~  184 (524)
T PF05977_consen  106 LLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISIL  184 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788999999999999999999999999999999998888888888888887765    667788777654444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10504 putative transporter; Provisional

Probab=96.81  E-value=0.0067  Score=44.45  Aligned_cols=54  Identities=6%  Similarity=-0.197  Sum_probs=45.2

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      .-++.|++.+...+.....+.+..|++.++...++.+....+|..+++.+.+..
T Consensus       359 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        359 VLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888877788888889999999999999999999999988888776544

>TIGR00788 fbt folate/biopterin transporter

Probab=96.79  E-value=0.009  Score=44.20  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=45.0

Q ss_pred             HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      -++.+++.+........++++..|++.+|+..++++....+|..+++.++..+
T Consensus       358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       358 SIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             hHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777778889999999999999999999999999999998776655

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00895 2A0115 benzoate transport

Probab=96.77  E-value=0.0026  Score=44.94  Aligned_cols=55  Identities=16%  Similarity=-0.004  Sum_probs=48.6

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI   57 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~   57 (130)
                      ++..++.|++.+...+....+++|..|++.|++..++.+....+|..+++.+.+.
T Consensus       342 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       342 LLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            4567888999998899999999999999999999999999999999999877553

>TIGR00900 2A0121 H+ Antiporter protein

Probab=96.76  E-value=0.0031  Score=44.00  Aligned_cols=56  Identities=14%  Similarity=0.032  Sum_probs=49.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI   57 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~   57 (130)
                      ++++.++.|++.+...+....++.|..|++.|++..++.+....+|..+++.+.+.
T Consensus       304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~  359 (365)
T TIGR00900       304 FLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP  359 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677899999998888889999999999999999999999999999988877554

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.76  E-value=0.01  Score=44.13  Aligned_cols=72  Identities=14%  Similarity=0.200  Sum_probs=52.1

Q ss_pred             hhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHhhcccc
Q psy168           13 MGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMILFLPES   84 (130)
Q Consensus        13 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~~~~pes   84 (130)
                      .|...+....+..+..+++.+++..++.+....+|..+++.+.+.+    ||+..|.+.++.+++..+.....+++
T Consensus       330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3434455567778899999999999999888888877666565544    89999988887777766544444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.70  E-value=0.022  Score=41.18  Aligned_cols=56  Identities=20%  Similarity=0.269  Sum_probs=43.5

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccC-------CcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCE-------PRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      ++..++.|++.+...+.....++|..+       ++.+|...++++.+..+|..+++.+.+..
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       315 LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677888888888888888888765       55678889998888888888887765543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.70  E-value=0.014  Score=38.97  Aligned_cols=72  Identities=22%  Similarity=0.261  Sum_probs=55.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCC-cchhHHHHHHHH-HHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEP-RIRGSLTLLSGV-SGNGGALGIFFLNAIT------DWRTTTLISSVVPIL   73 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~   73 (130)
                      +++.|++.|++.|...+....+++|+.|. +.|+...+.... ....|..+++.++...      +||+.+.........
T Consensus        97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477          97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            46789999999999999999999999998 778888888777 5777777777554433      688866666554433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.68  E-value=0.019  Score=41.05  Aligned_cols=79  Identities=19%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcc---hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI---RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILA   74 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~   74 (130)
                      ++++-++.++|.|+.=+....+.+|.++++.   |...-+.+..+..+|.+++..+..++    +|.+.|.+.++..++.
T Consensus        36 ~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~  115 (372)
T PF00854_consen   36 FYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLA  115 (372)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHH
Confidence            5677889999999999999999999998864   44444557888888999998776666    7999999887766665


Q ss_pred             HHHHhh
Q psy168           75 FAMILF   80 (130)
Q Consensus        75 ~~~~~~   80 (130)
                      .+.+..
T Consensus       116 ~~~f~~  121 (372)
T PF00854_consen  116 LIVFLS  121 (372)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            554433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.66  E-value=0.018  Score=41.42  Aligned_cols=78  Identities=26%  Similarity=0.317  Sum_probs=62.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++.+-.+.|.+.+......+..+-+.+|++. +..+++|..+.+.|..+++.+...+     +||....+=+.++++.++
T Consensus       102 L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~  180 (395)
T COG2807         102 LFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALL  180 (395)
T ss_pred             HHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            5677889999999999999999999888765 6788899888888887777665444     799999888888777666


Q ss_pred             HHhh
Q psy168           77 MILF   80 (130)
Q Consensus        77 ~~~~   80 (130)
                      .++.
T Consensus       181 ~WlP  184 (395)
T COG2807         181 IWLP  184 (395)
T ss_pred             HHhh
Confidence            5443

>PRK03699 putative transporter; Provisional

Probab=96.64  E-value=0.0093  Score=42.80  Aligned_cols=79  Identities=14%  Similarity=0.100  Sum_probs=56.5

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMIL   79 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~~   79 (130)
                      +.-++.|++.+..++....+..|..|.+ ++...+....+..+|..+++.+.+.+    +|+..++..++...+..+...
T Consensus       299 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        299 YAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI  377 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence            4567788888877787777888877644 56677777777888888888776655    888888877766666555444


Q ss_pred             hccc
Q psy168           80 FLPE   83 (130)
Q Consensus        80 ~~pe   83 (130)
                      ..+.
T Consensus       378 ~~~~  381 (394)
T PRK03699        378 LLGF  381 (394)
T ss_pred             HHHH
Confidence            4443

>PRK10054 putative transporter; Provisional

Probab=96.64  E-value=0.013  Score=42.22  Aligned_cols=81  Identities=11%  Similarity=0.061  Sum_probs=54.1

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-H
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-M   77 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~   77 (130)
                      +++.++.|++.+...+....++.+..|++.|++..+..+ ...+|..+++.+.+.+    +-...|++.++...+... .
T Consensus       302 ~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        302 GMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence            456778888888777888889999999999998877654 3446777887776655    555566655444444333 3


Q ss_pred             Hhhcccc
Q psy168           78 ILFLPES   84 (130)
Q Consensus        78 ~~~~pes   84 (130)
                      ..-..|.
T Consensus       381 ~~~~~~~  387 (395)
T PRK10054        381 LKGMRAR  387 (395)
T ss_pred             HhccccC
Confidence            3334443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.60  E-value=0.016  Score=43.58  Aligned_cols=71  Identities=18%  Similarity=0.168  Sum_probs=55.5

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL   73 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~   73 (130)
                      +++-++.|++.....+...+.+.+..|++.||+..+++++....+..+|..+.+.+    +-+..+.+.++..++
T Consensus       311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll  385 (524)
T PF05977_consen  311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLL  385 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            44667888888887777788889999999999999999998888888888876665    666666665544333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK12307 putative sialic acid transporter; Provisional

Probab=96.59  E-value=0.014  Score=42.13  Aligned_cols=42  Identities=14%  Similarity=-0.051  Sum_probs=35.2

Q ss_pred             cchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168           17 EGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus        17 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      .+..+.++.|.+|++.|++..++.+....+|..+++.+.+.+
T Consensus       339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l  380 (426)
T PRK12307        339 GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL  380 (426)
T ss_pred             hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence            345567889999999999999998888888888888886655

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.57  E-value=0.021  Score=40.83  Aligned_cols=66  Identities=14%  Similarity=0.044  Sum_probs=49.0

Q ss_pred             HHhhhhcccchhhhhhhhccCC-cchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHH
Q psy168            9 LGAGMGFCEGPIMSYLGEVCEP-RIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILA   74 (130)
Q Consensus         9 ~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~   74 (130)
                      .+++.|...+.....+.+..++ +.+++..++.+....+|..+++.+.+.+    +|+..|+..++..++.
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       313 GSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            3444555556666666666666 8999999999999999999999887765    7778887776555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.54  E-value=0.011  Score=42.58  Aligned_cols=72  Identities=15%  Similarity=0.160  Sum_probs=44.4

Q ss_pred             HHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy168            7 IMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMI   78 (130)
Q Consensus         7 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~   78 (130)
                      +..|++.+...+....++.+..|.+.++...+....+...+..++..+....||+..|.+.++.+.+.++..
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        315 LCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            455666777777777888888887776554444333332232233333333499999999887776655544

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.53  E-value=0.0079  Score=43.48  Aligned_cols=54  Identities=15%  Similarity=0.132  Sum_probs=35.7

Q ss_pred             cchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHh-hcccc
Q psy168           31 RIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFAMIL-FLPES   84 (130)
Q Consensus        31 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~~~~-~~pes   84 (130)
                      +++++..+..+....+|..+++.++..+   +|++.|+..++..++..+..+ ..+|.
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDA  194 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccc
Confidence            3455566666666777777777776655   899999988877766555333 34443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=96.44  E-value=0.015  Score=42.25  Aligned_cols=81  Identities=22%  Similarity=0.317  Sum_probs=57.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccC-CcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------hhHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCE-PRIRGSLTLLSGVSGNGGALGIFFLNAIT-----------DWRTTTLISSVV   70 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~wr~~~~~~~~~   70 (130)
                      .+.-++..++.........++.+|+.+ .++|.+..+.-+.+..+|.++...+...+           +|++..++.+++
T Consensus       107 ~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv  186 (428)
T PF13347_consen  107 FVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIV  186 (428)
T ss_pred             HHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHH
Confidence            345556677777777777788899987 47999999988887777776444432221           589888888777


Q ss_pred             HHHHHH-HHhhccc
Q psy168           71 PILAFA-MILFLPE   83 (130)
Q Consensus        71 ~~~~~~-~~~~~pe   83 (130)
                      ..+... ..+..+|
T Consensus       187 ~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  187 GLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHhhhhhheeee
Confidence            777655 6666777

>KOG0252|consensus

Probab=96.30  E-value=0.0063  Score=45.00  Aligned_cols=70  Identities=21%  Similarity=0.249  Sum_probs=56.0

Q ss_pred             ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---------hhHHHHHHHHHHHHHHHHHHhhcccch
Q psy168           16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---------DWRTTTLISSVVPILAFAMILFLPESP   85 (130)
Q Consensus        16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---------~wr~~~~~~~~~~~~~~~~~~~~pes~   85 (130)
                      ...+..++-+|.+|.+.|+++-++...+-.+|.+++...-...         +-|..+++.+...+...+..+++|||.
T Consensus       423 Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  423 PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence            3455567779999999999999999999999998887653322         678899988887777777777889984

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.29  E-value=0.025  Score=42.21  Aligned_cols=54  Identities=9%  Similarity=0.036  Sum_probs=48.3

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA   56 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~   56 (130)
                      ...-++.|+|++...++...++.+..|++.++..++++++...+|..++..++.
T Consensus       383 i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~  436 (489)
T PRK10207        383 VLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT  436 (489)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999988887753

>KOG2816|consensus

Probab=96.22  E-value=0.018  Score=42.67  Aligned_cols=73  Identities=23%  Similarity=0.190  Sum_probs=58.9

Q ss_pred             hhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HHhhcccch
Q psy168           13 MGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-MILFLPESP   85 (130)
Q Consensus        13 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~~~~~pes~   85 (130)
                      .+........|++|+...++|....++....+..+..+++.++...    +.-..+.+.++..+...+ ...++||+-
T Consensus       126 ~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  126 FSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             hhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            3445667788999999999999999999999999999999988876    555667777766666655 778889874

>PRK09669 putative symporter YagG; Provisional

Probab=96.20  E-value=0.05  Score=39.77  Aligned_cols=79  Identities=16%  Similarity=0.195  Sum_probs=47.5

Q ss_pred             HHHHHHhhhhcccchhhhhhhhcc-CCcchhHHHHHHHHHHHhHHHHHHHhhh-----h------hhhHHHHHHHHHHHH
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVC-EPRIRGSLTLLSGVSGNGGALGIFFLNA-----I------TDWRTTTLISSVVPI   72 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-----~------~~wr~~~~~~~~~~~   72 (130)
                      ..++.+.+.........++.+|+. ++++|++..+.-..+..+|..+++.+..     .      .+|+..+.+.+++..
T Consensus       115 ~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~  194 (444)
T PRK09669        115 TYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGV  194 (444)
T ss_pred             HHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            334445455445555557788887 5588998877776666666555543321     1      168877777776665


Q ss_pred             HHHH-HHhhccc
Q psy168           73 LAFA-MILFLPE   83 (130)
Q Consensus        73 ~~~~-~~~~~pe   83 (130)
                      +..+ .++..+|
T Consensus       195 v~~~~~~~~~~e  206 (444)
T PRK09669        195 VLFFCCFFMTKE  206 (444)
T ss_pred             HHHHHHhCCeEE
Confidence            5544 4444454

>KOG0253|consensus

Probab=96.19  E-value=0.0076  Score=43.71  Aligned_cols=76  Identities=14%  Similarity=0.034  Sum_probs=54.3

Q ss_pred             HHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHhhcc
Q psy168            7 IMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--DWRTTTLISSVVPILAFAMILFLP   82 (130)
Q Consensus         7 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~wr~~~~~~~~~~~~~~~~~~~~p   82 (130)
                      |..-++.++.+.+.++|..|++|.+.|+++.|....+.-+|.++.|.++--.  +-.....+.....++..++..++|
T Consensus       442 f~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  442 FTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             HHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeee
Confidence            3344556777888899999999999999999999999999999999876222  222334444445555555555555

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.12  E-value=0.017  Score=41.38  Aligned_cols=74  Identities=9%  Similarity=0.110  Sum_probs=54.2

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++.+++.|++.+........++.+..+.+.+++..+. ++....+|..+++.+.+.+    ||+..|.+.++...+..+
T Consensus       311 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       311 VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            4567788887766655666677888888888876655 5777888888888776655    888888887766655433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.07  E-value=0.031  Score=41.67  Aligned_cols=82  Identities=7%  Similarity=-0.021  Sum_probs=63.6

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCC--cchhHHHHHHHHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEP--RIRGSLTLLSGVSGNGGALGIFFLNAIT------DWRTTTLISSVVPILAF   75 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~~~   75 (130)
                      +.-.+.|+.-+..+.+.+..+++..++  +..|..+++++.+.++..++..+..+.+      +-...+.+.++..++..
T Consensus       385 ~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa  464 (477)
T TIGR01301       385 IVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSG  464 (477)
T ss_pred             HHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHH
Confidence            445678999999999999999999995  4559999999999999999888665543      44567777777777766


Q ss_pred             H-HHhhcccch
Q psy168           76 A-MILFLPESP   85 (130)
Q Consensus        76 ~-~~~~~pes~   85 (130)
                      + .++.+|..+
T Consensus       465 ~~~~~~~~~~~  475 (477)
T TIGR01301       465 LLALILLPRPR  475 (477)
T ss_pred             HHHHHhCCCCC
Confidence            5 666677653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09848 glucuronide transporter; Provisional

Probab=96.07  E-value=0.087  Score=38.53  Aligned_cols=54  Identities=17%  Similarity=0.074  Sum_probs=42.1

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCc-------chhHHHHHHHHHHHhHHHHHHHhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPR-------IRGSLTLLSGVSGNGGALGIFFLNA   56 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~   56 (130)
                      ++..++.|+|.+...+......+|..+.+       .+|...++++.+..+|..+++.+..
T Consensus       323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g  383 (448)
T PRK09848        323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA  383 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999888888888887754       4588888888888888888776644

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.01  E-value=0.044  Score=39.93  Aligned_cols=64  Identities=11%  Similarity=-0.044  Sum_probs=36.5

Q ss_pred             cchhhhhhhhccCCcchhHHHHHHHHH-HHhHHHHHHHhhhhh---h-hHHHHHHHHHHHHHHHHHHhh
Q psy168           17 EGPIMSYLGEVCEPRIRGSLTLLSGVS-GNGGALGIFFLNAIT---D-WRTTTLISSVVPILAFAMILF   80 (130)
Q Consensus        17 ~~~~~~~~~e~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~---~-wr~~~~~~~~~~~~~~~~~~~   80 (130)
                      .+....+++|++|++.|++..++.+.. ..+.....+.+....   + |...++..++..++..+..++
T Consensus       354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            345567889999999999999986543 322222244433333   3 555555554444444443333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=95.98  E-value=0.084  Score=38.07  Aligned_cols=70  Identities=6%  Similarity=-0.043  Sum_probs=50.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL   73 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~   73 (130)
                      .+.-++.|++.+...+....++.+..| ++++...+.......+|..+|+.+++..    +++..++..++...+
T Consensus       309 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        309 TGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            345678888888888888888888887 4566777777777788888888776665    677777776554433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=95.97  E-value=0.014  Score=40.64  Aligned_cols=50  Identities=22%  Similarity=0.321  Sum_probs=45.1

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIF   52 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~   52 (130)
                      ++.-++.|++.+...+....++.|..|+++||+..++.+....+|..++|
T Consensus       303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            34567889999999999999999999999999999999999999998886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.82  E-value=0.0017  Score=47.21  Aligned_cols=69  Identities=26%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHH-HHHHhhcccc
Q psy168           16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILA-FAMILFLPES   84 (130)
Q Consensus        16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~-~~~~~~~pes   84 (130)
                      ..+....+.+|.+|.+.|+++.++......++..+++.+....    +-...+.+.++...+. .+.+++.|||
T Consensus       366 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET  439 (451)
T PF00083_consen  366 WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET  439 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence            3456668889999999999999998777777777666654443    2023344444444444 4477889998

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2504|consensus

Probab=95.74  E-value=0.0085  Score=44.93  Aligned_cols=80  Identities=14%  Similarity=0.080  Sum_probs=67.5

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~~   77 (130)
                      ++.-.+.|++.|.........+.|..+.++-..+.++...+.+++.++++.+.+.+     +|...|+..++..++..+.
T Consensus       392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~  471 (509)
T KOG2504|consen  392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL  471 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence            44557888999988888888999999999999999999999999999999987766     6889999888777776665


Q ss_pred             Hhhcc
Q psy168           78 ILFLP   82 (130)
Q Consensus        78 ~~~~p   82 (130)
                      ++..|
T Consensus       472 ~~~~~  476 (509)
T KOG2504|consen  472 LLILR  476 (509)
T ss_pred             HHHhH
Confidence            55555

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=95.73  E-value=0.084  Score=37.74  Aligned_cols=70  Identities=13%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHH-HHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG-VSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL   73 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~   73 (130)
                      +++..++.|++.+...+....++.+. +++++++..+.+. .....|..+++.+++.+    ++ ..++..++..++
T Consensus       296 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        296 LIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            35678889999998888888888886 5555678777765 55667777888776665    44 344444444433

>PRK11462 putative transporter; Provisional

Probab=95.50  E-value=0.2  Score=37.09  Aligned_cols=80  Identities=19%  Similarity=0.120  Sum_probs=50.6

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccC-CcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------hhHHHHHHHHHHHH
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCE-PRIRGSLTLLSGVSGNGGALGIFFLNAIT-----------DWRTTTLISSVVPI   72 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~wr~~~~~~~~~~~   72 (130)
                      .-++..++.......-.++.+|+++ .++|++..++-..+..+|..+++.+...+           +|+....+.+++.+
T Consensus       115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~  194 (460)
T PRK11462        115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF  194 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            3344455555555555667788877 69999999998888787776665442211           57776666666555


Q ss_pred             HHHH-HHhhcccc
Q psy168           73 LAFA-MILFLPES   84 (130)
Q Consensus        73 ~~~~-~~~~~pes   84 (130)
                      +... .+...+|.
T Consensus       195 i~~~i~~~~~kE~  207 (460)
T PRK11462        195 MMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHhcceec
Confidence            5443 44445554

>KOG3762|consensus

Probab=95.48  E-value=0.05  Score=41.18  Aligned_cols=74  Identities=23%  Similarity=0.210  Sum_probs=54.3

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHH-----HHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG-----VSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMI   78 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~-----~~~~~g~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~   78 (130)
                      .-+++|+..+..+..+..|++...|++.|.++.++.+     ++.++|.++|..+-..++=|..|.+.++.+++..+.+
T Consensus       465 ieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  465 IEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999998864     3334455555444333466777777766666655433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.47  E-value=0.034  Score=41.16  Aligned_cols=74  Identities=20%  Similarity=0.173  Sum_probs=47.5

Q ss_pred             HHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHhhcc
Q psy168            8 MLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFAMILFLP   82 (130)
Q Consensus         8 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~~~~~~p   82 (130)
                      +.|++.+...+....++.+.. ++.+|...++.+....+|..+++.+....   +|+..|++.+++.++..+..++.+
T Consensus       357 l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        357 LFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            344444434444445556654 46899999998887777887777664321   699999888776666655444443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=95.47  E-value=0.03  Score=40.57  Aligned_cols=52  Identities=13%  Similarity=0.090  Sum_probs=40.6

Q ss_pred             chhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHH
Q psy168           18 GPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSV   69 (130)
Q Consensus        18 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~   69 (130)
                      +.......|..|++.|++..++.+....+|..+++.+.+.+     +|++.+++.++
T Consensus       352 ~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       352 AIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             hHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            33445557889999999999999999999999998775544     58888876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15075 citrate-proton symporter; Provisional

Probab=95.43  E-value=0.088  Score=38.38  Aligned_cols=52  Identities=15%  Similarity=0.025  Sum_probs=34.8

Q ss_pred             HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHH-HHHHHhHHHHHHHhhhh
Q psy168            6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLS-GVSGNGGALGIFFLNAI   57 (130)
Q Consensus         6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~   57 (130)
                      -++.|++.+...+....+++|..|++.|++..++. +.+..++..++|.+...
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~  390 (434)
T PRK15075        338 ELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW  390 (434)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence            34456666666666667889999999999998885 44444434455555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=95.43  E-value=0.17  Score=36.38  Aligned_cols=54  Identities=11%  Similarity=0.028  Sum_probs=40.1

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      ++-++.|++.+...+........ .++++||+..+.++....+|..+++.+....
T Consensus       314 ~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        314 AGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45667778887766655554433 3458999999999999999998888887655

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.37  E-value=0.17  Score=36.44  Aligned_cols=67  Identities=16%  Similarity=0.098  Sum_probs=47.8

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcc-hhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRI-RGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVV   70 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~   70 (130)
                      ++-++.|++.+...+...+.+.+..|++. +|+..++.+....+|..++..+....     .++..+...+.+
T Consensus       298 ~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (393)
T PRK11195        298 PLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL  370 (393)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            45567888888777777777788766655 79999999999888888888775544     444444444443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=95.30  E-value=0.065  Score=39.30  Aligned_cols=71  Identities=20%  Similarity=0.143  Sum_probs=46.6

Q ss_pred             HHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHHhh
Q psy168            9 LGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------DWRTTTLISSVVPILAFAMILF   80 (130)
Q Consensus         9 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------~wr~~~~~~~~~~~~~~~~~~~   80 (130)
                      .|.+.+...+.......|..|. .+|...++.+....+|..+++.+...+       +|+..|.+.++..++..+....
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       371 ANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            3333333333333344566655 899999999999999999988775543       3888888877666665544333

>KOG0255|consensus

Probab=95.26  E-value=0.11  Score=38.74  Aligned_cols=82  Identities=13%  Similarity=0.105  Sum_probs=56.1

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--hhHH-HHHHHHHHHHHHH-HHHhh
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--DWRT-TTLISSVVPILAF-AMILF   80 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~wr~-~~~~~~~~~~~~~-~~~~~   80 (130)
                      .-.+..++.+..+.+.+.+.+|.+|...|+.+.+.......+|.++++.+....  .+.. .+...+....+.. +...+
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  491 (521)
T KOG0255|consen  412 LPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLL  491 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhc
Confidence            334445556666666789999999999999999999999999999998876544  1111 1112233334444 35588


Q ss_pred             cccchh
Q psy168           81 LPESPT   86 (130)
Q Consensus        81 ~pes~~   86 (130)
                      +||+..
T Consensus       492 lpet~~  497 (521)
T KOG0255|consen  492 LPETKG  497 (521)
T ss_pred             CcccCC
Confidence            999853

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=95.21  E-value=0.14  Score=36.66  Aligned_cols=55  Identities=22%  Similarity=0.071  Sum_probs=45.6

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      +++.++.|++.+...+....+..|..| +.++...++.+....+|..+++.+....
T Consensus       303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        303 LVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            445677888888888888888888886 5789999999988899999998887666

>PRK09669 putative symporter YagG; Provisional

Probab=95.08  E-value=0.23  Score=36.34  Aligned_cols=55  Identities=11%  Similarity=-0.077  Sum_probs=38.4

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCC-------cchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEP-------RIRGSLTLLSGVSGNGGALGIFFLNAI   57 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~   57 (130)
                      ++.-++.|++.+...+.....++|..+.       +..|...+....+..+|..+++.+.+.
T Consensus       323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~  384 (444)
T PRK09669        323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW  384 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556788999999999999999988753       334455666666666676666655443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=95.00  E-value=0.23  Score=36.77  Aligned_cols=53  Identities=13%  Similarity=0.135  Sum_probs=35.2

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccC-------CcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCE-------PRIRGSLTLLSGVSGNGGALGIFFLNA   56 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~   56 (130)
                      +.-++.|++.+...+....+++|..+       .+..|...+....+.-+|..+++.+.+
T Consensus       329 i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g  388 (473)
T PRK10429        329 IAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG  388 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466778888888888888998855       333455666666666666666655533

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=94.97  E-value=0.033  Score=40.77  Aligned_cols=74  Identities=16%  Similarity=0.071  Sum_probs=55.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHh-HHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNG-GALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      .++-+++|+..-+...+.-....|..|++--|++.++...+..+ |...+...-+.+    +|...|+...+.+++..+
T Consensus       350 ~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~l  428 (448)
T COG2271         350 AILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAIL  428 (448)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHH
Confidence            45667888888777777778889999999999999999888777 666655443333    899888876665555444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=94.93  E-value=0.038  Score=41.16  Aligned_cols=80  Identities=21%  Similarity=0.266  Sum_probs=60.6

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI--RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAF   75 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~   75 (130)
                      ++++-.+.++|.|..=+.....++|.+|++.  |...-+++.++..+|+++++.+....    +|...|...++-....+
T Consensus       120 l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl  199 (498)
T COG3104         120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGL  199 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            4566777889999999999999999998843  44555567777888888888886665    89999998876666655


Q ss_pred             HHHhhc
Q psy168           76 AMILFL   81 (130)
Q Consensus        76 ~~~~~~   81 (130)
                      +.+...
T Consensus       200 ~~f~~~  205 (498)
T COG3104         200 VIFLLG  205 (498)
T ss_pred             HHHHHc
Confidence            544443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=94.87  E-value=0.22  Score=36.56  Aligned_cols=81  Identities=15%  Similarity=0.132  Sum_probs=60.1

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      +.+.+.+-|+-.+.....+..|+++.+|++..++.-.+ ++...++|..+.+.+.+..    |.+-+|++.+.+.++..+
T Consensus       315 i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~l  394 (412)
T PF01306_consen  315 ISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTL  394 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHH
Confidence            35678888888998889999999999999998777766 4788888888777776655    788888877766555544


Q ss_pred             -HHhhcc
Q psy168           77 -MILFLP   82 (130)
Q Consensus        77 -~~~~~p   82 (130)
                       ..+.++
T Consensus       395 i~~f~l~  401 (412)
T PF01306_consen  395 ISAFTLK  401 (412)
T ss_dssp             HHHHHS-
T ss_pred             Hheeeec
Confidence             443333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.86  E-value=0.2  Score=37.59  Aligned_cols=55  Identities=20%  Similarity=0.199  Sum_probs=45.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHH-HHhHHHHHHHhhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVS-GNGGALGIFFLNA   56 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~   56 (130)
                      +++.-++.++|+-...|+....+++..|++.||..++.+... ..+|..++..+..
T Consensus       380 l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~  435 (493)
T PRK15462        380 MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD  435 (493)
T ss_pred             HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999999999998664 3677776655533

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.69  E-value=0.11  Score=32.89  Aligned_cols=53  Identities=13%  Similarity=0.017  Sum_probs=44.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFL   54 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~   54 (130)
                      ++.+-.+.|++.+...+....|+.+...++.|++..+++-....++.++|.++
T Consensus        92 l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen   92 LYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             HHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999988766666666666544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK10429 melibiose:sodium symporter; Provisional

Probab=94.55  E-value=0.45  Score=35.21  Aligned_cols=80  Identities=14%  Similarity=0.103  Sum_probs=46.7

Q ss_pred             HHHHHHhhhhcccchhhhhhhhcc-CCcchhHHHHHHHHHHHhHHHHHHHhhh-----h---h---hhHHHHHHHHHHHH
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVC-EPRIRGSLTLLSGVSGNGGALGIFFLNA-----I---T---DWRTTTLISSVVPI   72 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-----~---~---~wr~~~~~~~~~~~   72 (130)
                      .-++.+++.....+...+..+|+. +.++|.+..++-..+..+|..+.+.+..     .   .   +|++..++.++...
T Consensus       112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~  191 (473)
T PRK10429        112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFI  191 (473)
T ss_pred             HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            334455555555555667789988 6899999888755555554333332211     1   1   57776666666555


Q ss_pred             HHHH-HHhhcccc
Q psy168           73 LAFA-MILFLPES   84 (130)
Q Consensus        73 ~~~~-~~~~~pes   84 (130)
                      +..+ .++..+|.
T Consensus       192 ~~~~~~~~~~~e~  204 (473)
T PRK10429        192 VSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHcCceec
Confidence            5443 44446664

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=94.46  E-value=0.089  Score=38.55  Aligned_cols=55  Identities=20%  Similarity=0.069  Sum_probs=45.6

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      +.-++.|++.+...+.......+..|++.|+...++.+....+|..+++.+...+
T Consensus       353 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~  407 (485)
T TIGR00711       353 LPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI  407 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888998887777777777889999999999999999999999988775554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG2532|consensus

Probab=94.46  E-value=0.13  Score=38.34  Aligned_cols=60  Identities=23%  Similarity=0.401  Sum_probs=45.8

Q ss_pred             CCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHHhhc--ccchhHH
Q psy168           29 EPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------DWRTTTLISSVVPILAFAMILFL--PESPTWL   88 (130)
Q Consensus        29 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------~wr~~~~~~~~~~~~~~~~~~~~--pes~~~~   88 (130)
                      .+++-+..+++.+...++..+++|.+...+       .||++|++.++..++..+.+.++  -|...|.
T Consensus       387 apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~  455 (466)
T KOG2532|consen  387 APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWT  455 (466)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcccCcc
Confidence            778889999999999999999999885544       89999999988777765544443  3433453

>KOG0254|consensus

Probab=94.42  E-value=0.45  Score=35.67  Aligned_cols=71  Identities=20%  Similarity=0.093  Sum_probs=43.2

Q ss_pred             hcccchhhhhhhhccCCcchhHHHHHHHHHHH-hHHHHHHHhhhhhh---hHHHHHHHHHHHHH-HH-HHHhhcccc
Q psy168           14 GFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGN-GGALGIFFLNAITD---WRTTTLISSVVPIL-AF-AMILFLPES   84 (130)
Q Consensus        14 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~~---wr~~~~~~~~~~~~-~~-~~~~~~pes   84 (130)
                      .+..++...+.+|.+|.+.|+++.++...... ....+.........   +...|......+.+ .. +.+++.|||
T Consensus       410 ~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  410 IGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             cccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence            33456667889999999999999998644433 33333332222222   24455554444444 34 477889998

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=94.29  E-value=0.57  Score=33.09  Aligned_cols=50  Identities=20%  Similarity=0.276  Sum_probs=36.9

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHH-HhHHHHHHHhh
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSG-NGGALGIFFLN   55 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~   55 (130)
                      .-++.|++.+...+....+..|..| +.+++..++.+... ..|.+.++.++
T Consensus       306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888888776 67889888876554 45666666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=94.16  E-value=0.11  Score=38.69  Aligned_cols=56  Identities=11%  Similarity=-0.088  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      .+.-++.|++.|...+.....+.+..|+++++...++++....+|..+|..+.+.+
T Consensus       355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        355 WGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677889999988888888888999999999999999999999999888765543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=94.16  E-value=0.64  Score=33.98  Aligned_cols=73  Identities=14%  Similarity=0.077  Sum_probs=54.6

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      +.-++.|++.++....-...+++ .-++.++...+++.....+|..+|..+++..    ++....+..++.....+..
T Consensus       305 ~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~  381 (394)
T COG2814         305 ALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLL  381 (394)
T ss_pred             HHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence            34455777777766666666677 6678889999998888888888888877765    7888888888777766553

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=94.11  E-value=0.43  Score=32.68  Aligned_cols=76  Identities=8%  Similarity=-0.016  Sum_probs=44.3

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHhh
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMILF   80 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~~~   80 (130)
                      .-++.|.+.+...+...+...+.+| ++||+..++.....+++..+-..+...+    .-...+.....+..+.++..++
T Consensus       102 ~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~  180 (250)
T PF06813_consen  102 FLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFF  180 (250)
T ss_pred             HHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhh
Confidence            3445555555444555555567777 5899999999888888766655443332    2344444444444444443333


Q ss_pred             c
Q psy168           81 L   81 (130)
Q Consensus        81 ~   81 (130)
                      .
T Consensus       181 v  181 (250)
T PF06813_consen  181 V  181 (250)
T ss_pred             e
Confidence            3

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.89  E-value=0.37  Score=35.47  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             HHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------------hhHHHHHHHHHHHHHHH
Q psy168            8 MLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------------DWRTTTLISSVVPILAF   75 (130)
Q Consensus         8 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------~wr~~~~~~~~~~~~~~   75 (130)
                      +..+..+..+......++|++|+..-|+.-++......+|..++..++..+            +-.+..++..+..++..
T Consensus       327 l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l  406 (433)
T PF03092_consen  327 LEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPL  406 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence            344444445555667889999999999988888777777777777665554            22344445555554444


Q ss_pred             HHHhhcccc
Q psy168           76 AMILFLPES   84 (130)
Q Consensus        76 ~~~~~~pes   84 (130)
                      ++..++|+.
T Consensus       407 ~ll~lLp~~  415 (433)
T PF03092_consen  407 PLLFLLPPQ  415 (433)
T ss_pred             HHHHHcCCC
Confidence            455566664

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4686|consensus

Probab=93.72  E-value=0.19  Score=35.65  Aligned_cols=55  Identities=11%  Similarity=0.055  Sum_probs=46.0

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      ++..++|+..+...+.-.-.++.+.|.+.-|++-++.|....+|..+.+++.+++
T Consensus       357 ~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  357 TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            4566777777766555666788889999999999999999999999999998877

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.64  E-value=0.14  Score=37.39  Aligned_cols=56  Identities=18%  Similarity=-0.044  Sum_probs=49.2

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      ++.-+..|+..|..+..++..+.|-.++++|...++...++.+.|..++..++-..
T Consensus       339 f~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  339 FVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999888765543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00901 2A0125 AmpG-related permease

Probab=93.60  E-value=0.095  Score=36.92  Aligned_cols=42  Identities=12%  Similarity=0.231  Sum_probs=36.7

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSG   44 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~   44 (130)
                      ..+.++.|++.+...+....+++|.+|++.||+..++++...
T Consensus       313 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       313 FLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            446778899999999999999999999999999999887654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=93.55  E-value=0.22  Score=36.60  Aligned_cols=81  Identities=19%  Similarity=0.263  Sum_probs=60.8

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~~   77 (130)
                      .++=.+.|.+.|+.+..+=+|.++..|+++-+..-+++++.--.+..++|.+-..+     +=|.-+....+...+-++.
T Consensus       345 ~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         345 WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            34557889999999999999999999999999999999999999999998876555     4455555444443333444


Q ss_pred             Hhhccc
Q psy168           78 ILFLPE   83 (130)
Q Consensus        78 ~~~~pe   83 (130)
                      +..+|+
T Consensus       425 L~~v~~  430 (438)
T COG2270         425 LLRVKV  430 (438)
T ss_pred             EEeecC
Confidence            444554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=93.25  E-value=1.1  Score=33.56  Aligned_cols=82  Identities=21%  Similarity=0.233  Sum_probs=57.7

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCC-cchhHHHHHHHHHHHhHHHHHHHhhhhh-----------hhHHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEP-RIRGSLTLLSGVSGNGGALGIFFLNAIT-----------DWRTTTLISSVVP   71 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~wr~~~~~~~~~~   71 (130)
                      +.-++.|++.......-.+..+|+.+. ++|.+..+.-+.+..+|.++...+...+           +|+...++.++++
T Consensus       117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~  196 (467)
T COG2211         117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIG  196 (467)
T ss_pred             HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence            456677777777777777788887554 9999999998888888876665543222           7888877777776


Q ss_pred             HHHHH-HHhhcccch
Q psy168           72 ILAFA-MILFLPESP   85 (130)
Q Consensus        72 ~~~~~-~~~~~pes~   85 (130)
                      ++..+ .++-..|.+
T Consensus       197 ~i~~l~~~~~v~ER~  211 (467)
T COG2211         197 VILLLFCFFNVKERV  211 (467)
T ss_pred             HHHHHHHHHHhhccc
Confidence            66555 555555543

>PTZ00207 hypothetical protein; Provisional

Probab=93.05  E-value=0.97  Score=34.86  Aligned_cols=86  Identities=10%  Similarity=-0.073  Sum_probs=60.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHH-hhhhh-----------------hhHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFF-LNAIT-----------------DWRTT   63 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~-~~~~~-----------------~wr~~   63 (130)
                      ++++-++.|++.|...++....++|++. |+-|+.-.+..+..-+|.++-.. +.+.+                 =.|..
T Consensus       455 L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~  533 (591)
T PTZ00207        455 LPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMP  533 (591)
T ss_pred             hHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhH
Confidence            5778899999999999999999999999 88888877777777777666522 22211                 15677


Q ss_pred             HHHHHHHHHHHHH-HHhhcccchhHH
Q psy168           64 TLISSVVPILAFA-MILFLPESPTWL   88 (130)
Q Consensus        64 ~~~~~~~~~~~~~-~~~~~pes~~~~   88 (130)
                      |++.+..++..++ .....-++.+++
T Consensus       534 ~~v~~~~~~~g~~~s~~l~~R~r~~y  559 (591)
T PTZ00207        534 LAFLLGLSFLAFITSTYVHLQYRRLC  559 (591)
T ss_pred             HHHHHHHHHHHHHHHhheeeehHHHH
Confidence            7777766666554 344444555444

>KOG2563|consensus

Probab=92.96  E-value=0.57  Score=34.86  Aligned_cols=54  Identities=22%  Similarity=0.163  Sum_probs=35.0

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI   57 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~   57 (130)
                      .+..+.+.+.--.........+-|+++++|..+.++-.++..+|..++.++...
T Consensus       145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppi  198 (480)
T KOG2563|consen  145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPI  198 (480)
T ss_pred             HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccce
Confidence            344445444444333434566779999999999988777766666666665443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=92.70  E-value=0.82  Score=35.30  Aligned_cols=85  Identities=18%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------------------------
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------------------------   58 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------------------------   58 (130)
                      ..-++.|++.|.......+.+.-..|.+.-+..+++....-.+|..++..+...+                         
T Consensus       410 ~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~  489 (599)
T PF06609_consen  410 AFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPES  489 (599)
T ss_pred             HHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChh
Confidence            4456788888887777777777778888888888888777777766665432110                         


Q ss_pred             -----------------------------------------hhHHHHHHHHHHHHHHHHHHhhcccchhHH
Q psy168           59 -----------------------------------------DWRTTTLISSVVPILAFAMILFLPESPTWL   88 (130)
Q Consensus        59 -----------------------------------------~wr~~~~~~~~~~~~~~~~~~~~pes~~~~   88 (130)
                                                               .+|++++....++.+..++-+++++..++.
T Consensus       490 sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~m  560 (599)
T PF06609_consen  490 SLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKYM  560 (599)
T ss_pred             hHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence                                                     788888888888888888777777765543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=91.73  E-value=2.6  Score=31.01  Aligned_cols=74  Identities=16%  Similarity=0.151  Sum_probs=55.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--------------hhHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--------------DWRTTTLIS   67 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------~wr~~~~~~   67 (130)
                      +..+-++.|++.|.....+...+.+...+++.|..++.+...+.++.-++..+++..              ++-.+|.+.
T Consensus       304 ~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lE  383 (403)
T PF03209_consen  304 FRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALE  383 (403)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence            345678999999998888888999999999999999999888887776666665433              456666666


Q ss_pred             HHHHHHHH
Q psy168           68 SVVPILAF   75 (130)
Q Consensus        68 ~~~~~~~~   75 (130)
                      ++..+...
T Consensus       384 a~ll~~a~  391 (403)
T PF03209_consen  384 AVLLLAAL  391 (403)
T ss_pred             HHHHHHHH
Confidence            55444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=91.72  E-value=2  Score=30.70  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=39.8

Q ss_pred             HHHHHHhhhhcccchhh-hhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            5 GTIMLGAGMGFCEGPIM-SYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~-~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      +-++.|++.++..+... ....+..+.+.++..  ..+....+|..+++.+.+.+     +|+..+...++...+...
T Consensus       295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~  370 (382)
T PRK10091        295 FAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS  370 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence            33445555443333323 334444455555543  34566777888888776654     688888877665555443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=91.68  E-value=2.5  Score=33.11  Aligned_cols=75  Identities=20%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcch---hHHHHHHHHHHHhHHHHHHHhhhhh-----------hhHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIR---GSLTLLSGVSGNGGALGIFFLNAIT-----------DWRTTTLISS   68 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r---~~~~~~~~~~~~~g~~~~~~~~~~~-----------~wr~~~~~~~   68 (130)
                      +++=.+..+|.|+.-+.......|.++++.+   ...-.++..+..+|.++++.+...+           +|...|.+.+
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            4556677788998888889999998876543   3444445666666777666554333           3888888877


Q ss_pred             HHHHHHHHH
Q psy168           69 VVPILAFAM   77 (130)
Q Consensus        69 ~~~~~~~~~   77 (130)
                      +..++.++.
T Consensus       169 i~m~ia~lv  177 (654)
T TIGR00926       169 ILMILALIV  177 (654)
T ss_pred             HHHHHHHHH
Confidence            666665543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=91.67  E-value=2.3  Score=31.91  Aligned_cols=79  Identities=22%  Similarity=0.323  Sum_probs=53.4

Q ss_pred             HHHhhhhcccchhhhhhhhccCCcch--------------------------hHHHHHHHHHHHhHHHHHHHhhhhh---
Q psy168            8 MLGAGMGFCEGPIMSYLGEVCEPRIR--------------------------GSLTLLSGVSGNGGALGIFFLNAIT---   58 (130)
Q Consensus         8 l~G~~~g~~~~~~~~~~~e~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~---   58 (130)
                      +.-++.+........++.|+.+++.+                          ++..+.-.....+|.++..++....   
T Consensus       135 ia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~  214 (477)
T PF11700_consen  135 IANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVIS  214 (477)
T ss_pred             HHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33445555666667788999999888                          8888887666666766665553332   


Q ss_pred             ---------hhHHHHHHHHHHHHHHHH-HHhhcccchh
Q psy168           59 ---------DWRTTTLISSVVPILAFA-MILFLPESPT   86 (130)
Q Consensus        59 ---------~wr~~~~~~~~~~~~~~~-~~~~~pes~~   86 (130)
                               +-|..+.+.++-.+++.+ .+++.||.|+
T Consensus       215 ~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  215 PGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             CCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence                     247777777766666555 6777887764

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00889 2A0110 nucleoside transporter

Probab=91.57  E-value=0.85  Score=33.28  Aligned_cols=77  Identities=12%  Similarity=-0.031  Sum_probs=38.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhh----h----hccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYL----G----EVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSV   69 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~----~----e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~   69 (130)
                      +++.|++.|++.++..+......    .    |......|.+..+      .+|..+++.+....    .|+. |++.++
T Consensus        95 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~  167 (418)
T TIGR00889        95 MFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAG  167 (418)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHH
Confidence            35678888887665555443332    2    2232223333333      23444444444333    3443 445554


Q ss_pred             HHHHHHHHHhhcccch
Q psy168           70 VPILAFAMILFLPESP   85 (130)
Q Consensus        70 ~~~~~~~~~~~~pes~   85 (130)
                      ...+..+..++.||+|
T Consensus       168 ~~~~~~~~~~~~~e~~  183 (418)
T TIGR00889       168 SSALLGVFALTLPDIP  183 (418)
T ss_pred             HHHHHHHHHhcCCCCC
Confidence            4555444556778876

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=91.38  E-value=1  Score=32.72  Aligned_cols=71  Identities=15%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             HHHHHhhhhcccchhhhhhhhccCC-cchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            6 TIMLGAGMGFCEGPIMSYLGEVCEP-RIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         6 R~l~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      -++.|+|.|+.++.+..++..-+.. ++-+...++.|..-.+=..++|.+.+.+     +|+..........+...+
T Consensus       303 ~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i  379 (395)
T COG2807         303 ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI  379 (395)
T ss_pred             HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            4899999999999999999876554 5555555555555444444455555544     898887776655555444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=90.83  E-value=1.8  Score=31.97  Aligned_cols=81  Identities=21%  Similarity=0.203  Sum_probs=55.2

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~~~~~   77 (130)
                      +.-++-|++.+. ...-+.|+-...++++-.+.++..-....+|..++.+++..+      +.+.+.++......+.++.
T Consensus        99 ~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~  177 (412)
T PF01770_consen   99 LMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI  177 (412)
T ss_pred             HHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            456677777774 455667887778888888999888888888877777777755      5566666655444444445


Q ss_pred             Hhhcccch
Q psy168           78 ILFLPESP   85 (130)
Q Consensus        78 ~~~~pes~   85 (130)
                      -+++|..+
T Consensus       178 ~~fLP~~~  185 (412)
T PF01770_consen  178 ALFLPMPK  185 (412)
T ss_pred             HHHcCCCC
Confidence            45566544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11462 putative transporter; Provisional

Probab=90.39  E-value=1.9  Score=32.02  Aligned_cols=23  Identities=4%  Similarity=0.112  Sum_probs=14.5

Q ss_pred             HHHHhhhhcccchhhhhhhhccC
Q psy168            7 IMLGAGMGFCEGPIMSYLGEVCE   29 (130)
Q Consensus         7 ~l~G~~~g~~~~~~~~~~~e~~~   29 (130)
                      ++.|++.+...+.....++|..+
T Consensus       326 ~l~g~~~~~~~~l~~~m~ad~~d  348 (460)
T PRK11462        326 FVIGVLHQLVTPIQWVMMSDTVD  348 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHh
Confidence            45666666666665666776655

>PRK11043 putative transporter; Provisional

Probab=89.67  E-value=5  Score=28.74  Aligned_cols=53  Identities=11%  Similarity=-0.021  Sum_probs=37.7

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      +-.+.|++.+..++.......+..| +.++...++++.....+...++.+.+..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4456777888888877777777665 5799999998877666666666554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=89.67  E-value=1.3  Score=32.61  Aligned_cols=79  Identities=20%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCC--cchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-H
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEP--RIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-M   77 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~   77 (130)
                      .-++..++....-.++-..+.|....  +.||...+....+..+|.+++..+++..    +++..|.+.+++..+..+ .
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~  171 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVA  171 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHH
Confidence            33555566666666666677776532  3377777888888888999888777655    788888887766666554 4


Q ss_pred             Hhhccc
Q psy168           78 ILFLPE   83 (130)
Q Consensus        78 ~~~~pe   83 (130)
                      .+..+|
T Consensus       172 ~~~~~e  177 (433)
T PF03092_consen  172 LFLLEE  177 (433)
T ss_pred             HHhhhh
Confidence            445554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3764|consensus

Probab=89.62  E-value=1  Score=33.27  Aligned_cols=45  Identities=7%  Similarity=-0.052  Sum_probs=37.5

Q ss_pred             chhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168           32 IRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus        32 ~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      .-|...++.+.++++|+.+||.+++.+    |++|...+.++..++...
T Consensus       400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyap  448 (464)
T KOG3764|consen  400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAP  448 (464)
T ss_pred             eeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHH
Confidence            667888889999999999999998877    888888887777666543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=89.56  E-value=4.7  Score=28.49  Aligned_cols=42  Identities=17%  Similarity=0.164  Sum_probs=26.0

Q ss_pred             hcccchhhhhhhhccCCcchhHHHHHHHH-HHHhHHHHHHHhhh
Q psy168           14 GFCEGPIMSYLGEVCEPRIRGSLTLLSGV-SGNGGALGIFFLNA   56 (130)
Q Consensus        14 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~   56 (130)
                      +........++.|..| +.++...+..+. ...+|..+++.++.
T Consensus       302 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        302 SMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333444455667666 788888887644 35567777776644

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=89.16  E-value=6.8  Score=28.53  Aligned_cols=55  Identities=11%  Similarity=0.063  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      +++.++.|+|.+...+...... ....+..+|+..+++......+..++.....+.
T Consensus       316 ~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~  370 (413)
T PRK15403        316 VLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWL  370 (413)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777788777766655322 222333478888887777666666666555444

>TIGR01272 gluP glucose/galactose transporter

Probab=88.48  E-value=2.5  Score=29.63  Aligned_cols=59  Identities=10%  Similarity=-0.103  Sum_probs=39.9

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHH
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTL   65 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~   65 (130)
                      +-++.|++.+..+|+......+..|++ .+...++. .+..+|..+.|.+.+.+    +-+..++
T Consensus       236 ~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       236 FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            445789999999999988888877764 34555554 44557777777654443    4445544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09848 glucuronide transporter; Provisional

Probab=87.39  E-value=9.5  Score=27.97  Aligned_cols=51  Identities=18%  Similarity=0.087  Sum_probs=28.1

Q ss_pred             HHHHHhhhhcccchhhhhhhhccC-CcchhHHHHHHHHH-----HHhHHHHHHHhhh
Q psy168            6 TIMLGAGMGFCEGPIMSYLGEVCE-PRIRGSLTLLSGVS-----GNGGALGIFFLNA   56 (130)
Q Consensus         6 R~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~-----~~~g~~~~~~~~~   56 (130)
                      -++.+++.+...+.......|... +++|....+.-+.+     ..+|..+++.+..
T Consensus       116 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        116 YMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666555555566554 46788776654432     2244445555443

>KOG2615|consensus

Probab=87.28  E-value=1.2  Score=32.73  Aligned_cols=56  Identities=13%  Similarity=0.039  Sum_probs=45.5

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      .++-.+-.+..+..-+.....+.-..|.++||...|+.....+++-.+||++++.+
T Consensus       356 ~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i  411 (451)
T KOG2615|consen  356 YLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI  411 (451)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence            34455555666666677778888999999999999999999999999999998655

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=86.78  E-value=2.7  Score=31.70  Aligned_cols=75  Identities=12%  Similarity=0.009  Sum_probs=58.4

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh-------h---hhHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI-------T---DWRTTTLISSVVP   71 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------~---~wr~~~~~~~~~~   71 (130)
                      ++..-+++++|+=..-|+...+++...|+.-.+..++.+.+....|..++..++..       .   .-...|+..+...
T Consensus       397 lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~  476 (498)
T COG3104         397 LVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVA  476 (498)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999988877662       1   3344555555444


Q ss_pred             HHHHH
Q psy168           72 ILAFA   76 (130)
Q Consensus        72 ~~~~~   76 (130)
                      +....
T Consensus       477 i~~~~  481 (498)
T COG3104         477 IVIGI  481 (498)
T ss_pred             HHHHH
Confidence            44433

>TIGR00896 CynX cyanate transporter

Probab=86.11  E-value=1.6  Score=30.71  Aligned_cols=52  Identities=15%  Similarity=0.114  Sum_probs=36.0

Q ss_pred             HHHHHhhhhcccchhhhhhhhcc-CCcchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168            6 TIMLGAGMGFCEGPIMSYLGEVC-EPRIRGSLTLLSGVSGNGGALGIFFLNAI   57 (130)
Q Consensus         6 R~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~   57 (130)
                      -++.|++.|...+.....+.+.. ++++++...++.+....+|..+++.+.+.
T Consensus       292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~  344 (355)
T TIGR00896       292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV  344 (355)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678888888877766666544 45667888887777767777777765444

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=84.10  E-value=9  Score=27.92  Aligned_cols=55  Identities=18%  Similarity=0.047  Sum_probs=40.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCC-------cchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEP-------RIRGSLTLLSGVSGNGGALGIFFLNA   56 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~   56 (130)
                      +++.-++.|++.+...+.....++|..+.       +..|...+......-+|..++..+..
T Consensus       318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence            45667889999999999999999998774       34567777777766666666665533

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=83.74  E-value=8.2  Score=30.35  Aligned_cols=54  Identities=15%  Similarity=0.144  Sum_probs=46.3

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      --++.|+++.........+..+-+|++.|..+.+++.+...+|.++...+...-
T Consensus       571 q~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~  624 (654)
T TIGR00926       571 QYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFE  624 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            346778888887777778888889999999999999999999999998887665

>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins

Probab=83.41  E-value=2.1  Score=23.68  Aligned_cols=32  Identities=22%  Similarity=0.040  Sum_probs=20.2

Q ss_pred             HHHHHHHHhHHHHHHHhhhhh-hhHHHHHHHHH
Q psy168           38 LLSGVSGNGGALGIFFLNAIT-DWRTTTLISSV   69 (130)
Q Consensus        38 ~~~~~~~~~g~~~~~~~~~~~-~wr~~~~~~~~   69 (130)
                      -+.+....++.+++.+.++.. +.+.+++..++
T Consensus        11 ~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~   43 (76)
T PF06645_consen   11 KLMQYILIISAIISFIVGYITQSFSYTFYIYGA   43 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666777777766666 66666666543

Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=83.18  E-value=15  Score=27.79  Aligned_cols=53  Identities=17%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCC-------cchhHHHHHHHHHHHhHHHHHHHh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEP-------RIRGSLTLLSGVSGNGGALGIFFL   54 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~   54 (130)
                      +++..++.+++.+...+.....++|...-       +.-|..-+....+.=+|..++..+
T Consensus       330 ~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         330 IVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999998776332       333344444444444455555433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=83.10  E-value=2.9  Score=31.07  Aligned_cols=54  Identities=15%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA   56 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~   56 (130)
                      ++.-++.|+..|-..+..+.+..+..++++|..++.+...+..+|..+|..++.
T Consensus       376 ~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       376 IILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999888888889999999999999999999999998888876643

>KOG3098|consensus

Probab=82.64  E-value=17  Score=27.42  Aligned_cols=51  Identities=18%  Similarity=0.154  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFL   54 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~   54 (130)
                      +++-++.|++-+...+..+++++..+ ++.|...-+++-.-.+++..++...
T Consensus       357 ~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  357 LIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            45668899999999999999999999 6666677777666656555554433

>KOG1479|consensus

Probab=82.36  E-value=2.3  Score=31.30  Aligned_cols=55  Identities=20%  Similarity=0.155  Sum_probs=47.0

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA   56 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~   56 (130)
                      +++.-++.|+..|=.....+.+..+..+++++..++.+...+...|...|.+++.
T Consensus       346 ~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  346 FIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             HHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3556778899999888888899999999999999999999999999988877644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-05

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 7   IMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI------TDW 60
           I+ G G+G        Y+ E+    IRG L   +  +   G L ++ +N          W
Sbjct: 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASW 193
Query: 61  RTTT-----LISSVVPILAFAMILF-LPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVM 114
             T        S  +P L F M+L+ +PESP WL+ +G+   AE  LR + G +   + +
Sbjct: 194 LNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253
Query: 115 VEFEQ 119
            E + 
Sbjct: 254 QEIKH 258

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.78
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.15
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.12
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.88
2xut_A	524	Proton/peptide symporter family protein; transport	98.69
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.29
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.1
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.08
2xut_A	524	Proton/peptide symporter family protein; transport	97.87
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.72
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.64
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.43
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.88

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.78  E-value=1.2e-18  Score=125.15  Aligned_cols=106  Identities=26%  Similarity=0.454  Sum_probs=96.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------------hhHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------------DWRTTTLISSV   69 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------~wr~~~~~~~~   69 (130)
                      ++++|+++|++.|+..+..+.+++|++|++.|++..++.+.++..|.++++.++...            .||+.+.+..+
T Consensus       129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (491)
T 4gc0_A          129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECI  208 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhh
Confidence            678999999999999999999999999999999999999999999999988876543            68888888888


Q ss_pred             HHHHHHHHHhhcccchhHHHhcCChHHHHHHHHHhhCC
Q psy168           70 VPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGW  107 (130)
Q Consensus        70 ~~~~~~~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~  107 (130)
                      +.++..+..++.||||+|+..+++.+++++.+++..+.
T Consensus       209 ~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~  246 (491)
T 4gc0_A          209 PALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN  246 (491)
T ss_dssp             HHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence            88888888899999999999999999999999887664

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.15  E-value=3.7e-11  Score=85.14  Aligned_cols=86  Identities=14%  Similarity=0.160  Sum_probs=75.8

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h-hHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D-WRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-wr~~~~~~~~~~~~~~~   76 (130)
                      ++++|++.|++.+...+....+++|++|+++|++..++.+.+..+|..+++.++...    + ||+.|++.+++.++..+
T Consensus       122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~  201 (451)
T 1pw4_A          122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL  201 (451)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999887654    7 99999998887777655


Q ss_pred             -HHhhcccchhH
Q psy168           77 -MILFLPESPTW   87 (130)
Q Consensus        77 -~~~~~pes~~~   87 (130)
                       .+++.||+|+.
T Consensus       202 ~~~~~~~~~~~~  213 (451)
T 1pw4_A          202 FAFAMMRDTPQS  213 (451)
T ss_dssp             HHHHHCCCSSTT
T ss_pred             HHHhhccCCHhh
Confidence             66778888764

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.12  E-value=3.8e-10  Score=79.69  Aligned_cols=85  Identities=15%  Similarity=0.178  Sum_probs=70.9

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----h-----------------
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----D-----------------   59 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~-----------------   59 (130)
                      ++++|++.|++.|...+....+++|++|+++|++..++.+.+..+|..+++.++...     +                 
T Consensus       120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  199 (438)
T 3o7q_A          120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSA  199 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhh
Confidence            578999999999999999999999999999999999999999999999999886654     2                 


Q ss_pred             --------hHHHHHHHHHHHHHHHHH--Hhhcccchh
Q psy168           60 --------WRTTTLISSVVPILAFAM--ILFLPESPT   86 (130)
Q Consensus        60 --------wr~~~~~~~~~~~~~~~~--~~~~pes~~   86 (130)
                              ||+.|++.+++..+..+.  +...||+++
T Consensus       200 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          200 YKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS  236 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence                    999998777666655443  233577654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.96  E-value=3.5e-10  Score=78.59  Aligned_cols=86  Identities=16%  Similarity=0.151  Sum_probs=75.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-   76 (130)
                      ++++|++.|++.+...+....+++|+.|+++|++..+..+....+|..+++.++...    +||+.+++.++...+..+ 
T Consensus        91 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  170 (375)
T 2gfp_A           91 LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFS  170 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999999999999999999987766    899999988877777665 


Q ss_pred             HHhhcccchhH
Q psy168           77 MILFLPESPTW   87 (130)
Q Consensus        77 ~~~~~pes~~~   87 (130)
                      ..+..||+++.
T Consensus       171 ~~~~~~~~~~~  181 (375)
T 2gfp_A          171 MARWMPETRPV  181 (375)
T ss_dssp             CCCSSCCCSTT
T ss_pred             HHHHCcccCCC
Confidence            66678887653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.88  E-value=1.3e-08  Score=73.03  Aligned_cols=75  Identities=12%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI--RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAF   75 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~   75 (130)
                      ++++|++.|++.|...+....+++|++|+++  |+...+.++.+..+|..+++.++..+    +||+.|++.++...+..
T Consensus       111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  190 (491)
T 4aps_A          111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL  190 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999998  77788888899999999998887765    89999999876665544


Q ss_pred             H
Q psy168           76 A   76 (130)
Q Consensus        76 ~   76 (130)
                      +
T Consensus       191 ~  191 (491)
T 4aps_A          191 L  191 (491)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.69  E-value=1e-07  Score=68.89  Aligned_cols=77  Identities=13%  Similarity=0.093  Sum_probs=65.2

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH---HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL---SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILA   74 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~   74 (130)
                      ++++|++.|++.+...+....+++|++|+++|++..+.   ++.+..+|..+++.+...+    +||+.|++.++..++.
T Consensus       112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~  191 (524)
T 2xut_A          112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVA  191 (524)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999877666   8888999999999886655    8999999887776655


Q ss_pred             HHHH
Q psy168           75 FAMI   78 (130)
Q Consensus        75 ~~~~   78 (130)
                      .+..
T Consensus       192 ~~~~  195 (524)
T 2xut_A          192 TVFF  195 (524)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.29  E-value=3.9e-06  Score=60.07  Aligned_cols=69  Identities=17%  Similarity=0.119  Sum_probs=51.6

Q ss_pred             ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----------hhHHHHHHHHHHHHHHHH-HHhhcccc
Q psy168           16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----------DWRTTTLISSVVPILAFA-MILFLPES   84 (130)
Q Consensus        16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------~wr~~~~~~~~~~~~~~~-~~~~~pes   84 (130)
                      ..++.+.+.+|.+|.+.|+++.++......+|..+++.+...+          ++.+.|++.++++++..+ .++++|||
T Consensus       387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            4466778999999999999999998887777777765543222          445567777766666655 77889998

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.10  E-value=1.5e-05  Score=56.20  Aligned_cols=76  Identities=17%  Similarity=0.142  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHh-HHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNG-GALGIFFLNAIT----DWRTTTLISSVVPILAFAM   77 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~   77 (130)
                      .++-++.|++.+...+....++.|..|++.|++..++.+....+ |..+++.+.+.+    +|+..|++.++..++..+.
T Consensus       350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  429 (451)
T 1pw4_A          350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  429 (451)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            45667888888888888889999999999999999999999999 999998886655    7899998887776665554


Q ss_pred             H
Q psy168           78 I   78 (130)
Q Consensus        78 ~   78 (130)
                      .
T Consensus       430 ~  430 (451)
T 1pw4_A          430 L  430 (451)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.08  E-value=9.8e-06  Score=58.02  Aligned_cols=81  Identities=6%  Similarity=-0.097  Sum_probs=63.2

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH-HH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFA-MI   78 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~-~~   78 (130)
                      .++-++.|++.+...+....++.|..|++.|+...++.+....+|..+++.+....   ++.+.++..++..++..+ .+
T Consensus       390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (491)
T 4aps_A          390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV  469 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999988899999999999999999999999999999999999887666   566677776666666554 44


Q ss_pred             hhccc
Q psy168           79 LFLPE   83 (130)
Q Consensus        79 ~~~pe   83 (130)
                      .+.++
T Consensus       470 ~~~~~  474 (491)
T 4aps_A          470 FLSKR  474 (491)
T ss_dssp             HC---
T ss_pred             HHHHH
Confidence            44444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.87  E-value=2.8e-05  Score=56.13  Aligned_cols=56  Identities=14%  Similarity=0.175  Sum_probs=50.1

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT   58 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~   58 (130)
                      +++-++.|++.+...+....+++|..|++.|++..++++....+|..+++.+....
T Consensus       409 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~  464 (524)
T 2xut_A          409 ILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV  464 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45678889999999999999999999999999999999999999999999886655

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.72  E-value=2.2e-05  Score=55.50  Aligned_cols=80  Identities=11%  Similarity=0.051  Sum_probs=56.9

Q ss_pred             HHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HHh
Q psy168            6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-MIL   79 (130)
Q Consensus         6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~~~   79 (130)
                      .++.|++.+...+....+++|.+|++.|++..+. ++....+|..+++.+.+..    +++..|.+.++..++..+ .+.
T Consensus       319 ~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            3445665555556667899999999999998888 4777778888888776654    677788877766666555 344


Q ss_pred             hcccch
Q psy168           80 FLPESP   85 (130)
Q Consensus        80 ~~pes~   85 (130)
                      ..||.+
T Consensus       399 ~~~~~~  404 (417)
T 2cfq_A          399 TLSGPG  404 (417)
T ss_dssp             SSCCSC
T ss_pred             hhcCCC
Confidence            456543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.64  E-value=0.0018  Score=44.62  Aligned_cols=63  Identities=21%  Similarity=0.058  Sum_probs=51.7

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLI   66 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~   66 (130)
                      ++.-++.|++.+...+....++.|..| ++|++..++.+....+|..+++.+...+    +|+..++.
T Consensus       295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            356678899999999999999999998 8999999999999999988888776554    45555544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.43  E-value=0.0093  Score=41.73  Aligned_cols=67  Identities=12%  Similarity=-0.117  Sum_probs=49.8

Q ss_pred             HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h-hHHHHHHHHHHHHH
Q psy168            5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D-WRTTTLISSVVPIL   73 (130)
Q Consensus         5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-wr~~~~~~~~~~~~   73 (130)
                      +-++.|++.+...+....+..|..|++ ++...++.. ...+|..+++.+.+.+    + ++..|++.++..++
T Consensus       353 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          353 ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            347888999988999999989999876 888887766 4557888887776554    5 88888765544333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.88  E-value=0.00024  Score=50.15  Aligned_cols=78  Identities=15%  Similarity=0.080  Sum_probs=42.6

Q ss_pred             HHHHHhhhhcccchhhhhhhhccCC--cchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHhh
Q psy168            6 TIMLGAGMGFCEGPIMSYLGEVCEP--RIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFAMILF   80 (130)
Q Consensus         6 R~l~G~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~~~~~   80 (130)
                      +++.|++.|...+.....+.++.+.  +.++...+.......+|..+++.++...   +||+.|++.+++.++..+..++
T Consensus       107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~  186 (417)
T 2cfq_A          107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF  186 (417)
T ss_dssp             HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCS
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence            3444443333333333333344332  3445555666666677777777776554   7999998877665444444444


Q ss_pred             ccc
Q psy168           81 LPE   83 (130)
Q Consensus        81 ~pe   83 (130)
                      .+|
T Consensus       187 ~~~  189 (417)
T 2cfq_A          187 AKT  189 (417)
T ss_dssp             SCC
T ss_pred             cCc
Confidence            443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.05
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.42
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	94.47

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=3.5e-11  Score=83.08  Aligned_cols=85  Identities=15%  Similarity=0.185  Sum_probs=72.5

Q ss_pred             hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168            2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++++|++.|++.|...+....+++|++|+++|++..++.+.+..+|..+++.+....     +||+.+++.+++..+..+
T Consensus       119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  198 (447)
T d1pw4a_         119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL  198 (447)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHH
Confidence            567999999999999999999999999999999999999999999998888765543     899999988877777665


Q ss_pred             -HHhhcccchh
Q psy168           77 -MILFLPESPT   86 (130)
Q Consensus        77 -~~~~~pes~~   86 (130)
                       .+.+.+++|.
T Consensus       199 ~~~~~~~~~~~  209 (447)
T d1pw4a_         199 FAFAMMRDTPQ  209 (447)
T ss_dssp             HHHHHCCCSST
T ss_pred             HHHHhcccchh
Confidence             6666666664

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=3.1e-07  Score=61.52  Aligned_cols=74  Identities=11%  Similarity=0.051  Sum_probs=60.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHH-HHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLS-GVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      ++.-++.|++.+...+....+++|..|++.|++..+.. +....+|..+++.+.+.+    +|+..+++.+++.++..+
T Consensus       316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~  394 (417)
T d1pv7a_         316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTL  394 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999874 566778888888776554    899999888777766655

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3.1e-05  Score=52.60  Aligned_cols=74  Identities=18%  Similarity=0.121  Sum_probs=56.1

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHh-HHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168            3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNG-GALGIFFLNAIT----DWRTTTLISSVVPILAFA   76 (130)
Q Consensus         3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~   76 (130)
                      +++-++.|++.+...+....+.+|..|++.|++..++.+....+ |.++++.+.+.+    +|+..+++..+..++..+
T Consensus       347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  425 (447)
T d1pw4a_         347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI  425 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            34556778888888888889999999999999999998766555 566677665544    888888877665555444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.011  Score=38.64  Aligned_cols=83  Identities=16%  Similarity=0.111  Sum_probs=43.1

Q ss_pred             HHHHHHHhhhhcccchhhhhhhhccCC--cchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHH-HH
Q psy168            4 LGTIMLGAGMGFCEGPIMSYLGEVCEP--RIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAF-AM   77 (130)
Q Consensus         4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~-~~   77 (130)
                      +.+++.|.+.+...........+..+.  +.+....+........+..+++.++...   +|+..+........+.. +.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  184 (417)
T d1pv7a_         105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL  184 (417)
T ss_dssp             HHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHH
Confidence            344444444444444433333333322  2333344555666667777777666555   56665555554444444 46


Q ss_pred             Hhhcccchh
Q psy168           78 ILFLPESPT   86 (130)
Q Consensus        78 ~~~~pes~~   86 (130)
                      .+..++++.
T Consensus       185 ~~~~~~~~~  193 (417)
T d1pv7a_         185 FFAKTDAPS  193 (417)
T ss_dssp             HSSCCCSCS
T ss_pred             HHHhccccc
Confidence            666776653