Psyllid ID: psy16910

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MNNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSEVGFQNR
Secondary Structure (PSIPRED)
ccccEEEEEEEccccccccEEEEcccccEEEEEccccHHHHcccccccccccccccHHHHHHcccccccccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccccccccEEEEcccccEEEEEcHHHHHcccccccccccccccccHHHHHHHcccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MNNSSLLLEYsigdrhlentlvctktgrcvgidfgysfgvatqllpipelmpfrltphilavnepygsqeVALSSEVGFQNR
Flexible Loop (DISEMBL)
MNNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEvalssevgfqnr
Low Complexity Region (SEG)
MNNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSEVGFQNR
Disordered region (IsUnstruct)
*****LLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPY****************
Disordered Region (DISOPRED)
*NNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSEVGF***
Disordered Region (DISEMBL)
MNNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSEVGFQNR
Disordered Region (DISPRO)
*NNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSEVGFQNR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSEVGFQNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q54UC0	4299	DNA-dependent protein kin	yes	N/A	0.695	0.013	0.614	5e-15
P97313	4128	DNA-dependent protein kin	yes	N/A	0.658	0.013	0.592	6e-14
Q9DEI1	4146	DNA-dependent protein kin	N/A	N/A	0.658	0.013	0.592	1e-13
Q8WN22	4144	DNA-dependent protein kin	yes	N/A	0.768	0.015	0.539	1e-13
P78527	4128	DNA-dependent protein kin	yes	N/A	0.658	0.013	0.592	2e-13
Q8QGX4	4134	DNA-dependent protein kin	yes	N/A	0.658	0.013	0.592	2e-13
P0CP60	2967	Serine/threonine-protein	yes	N/A	0.536	0.014	0.622	3e-08
P0CP61	2968	Serine/threonine-protein	N/A	N/A	0.536	0.014	0.622	3e-08
Q6CP76	2761	Serine/threonine-protein	yes	N/A	0.585	0.017	0.551	9e-08
Q7RZT9	2939	Serine/threonine-protein	N/A	N/A	0.585	0.016	0.530	2e-07

>sp|Q54UC0|PRKDC_DICDI DNA-dependent protein kinase catalytic subunit OS=Dictyostelium discoideum GN=dnapkcs PE=3 SV=2

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGS 68
            IGDRHLEN L+  + GR +GIDFG++FG ATQ LPIPELMPFRLT    +   P  S
Sbjct: 4093 IGDRHLENFLISQRDGRLIGIDFGHAFGTATQFLPIPELMPFRLTRQFTSFLRPLDS 4149

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Is recruited to DNA ends by the Ku70/Ku80 heterodimer and is involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination (By similarity). This activity is only apparent when DNA damage is administered in G1 phase of the cell cycle. Required for efficient signaling of DNA double stranded breaks via phosphorylation of H2AX during G1.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P97313|PRKDC_MOUSE DNA-dependent protein kinase catalytic subunit OS=Mus musculus GN=Prkdc PE=1 SV=3

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
            IGDRHL N +V  +TG  +GIDFG++FG ATQ LP+PELMPFRLT   +++  P
Sbjct: 3920 IGDRHLNNFMVAMETGSVIGIDFGHAFGSATQFLPVPELMPFRLTRQFVSLMLP 3973

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Also involved in modulation of transcription. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism. Phosphorylates DCLRE1C, C1D, c-Abl/ABL1, histone H1, HSPCA, c-jun/JUN, p53/TP53, PARP1, POU2F1, DHX9, SRF, XRCC1, XRCC4, XRCC5, XRCC6, WRN, MYC and RFA2. Can phosphorylate C1D not only in the presence of linear DNA but also in the presence of supercoiled DNA. Ability to phosphorylate p53/TP53 in the presence of supercoiled DNA is dependent on C1D.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9DEI1|PRKDC_XENLA DNA-dependent protein kinase catalytic subunit OS=Xenopus laevis GN=prkdc PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
            IGDRHL N ++  +TG  +GIDFG++FG ATQ LP+PELMPFRLT  I+ +  P
Sbjct: 3938 IGDRHLSNFMINMETGGMIGIDFGHAFGTATQFLPVPELMPFRLTRQIVNLMLP 3991

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic subunit OS=Canis familiaris GN=PRKDC PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 42/63 (66%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEV 71
            IGDRHL N +V  +TG  +GIDFG++FG ATQ LP+PELMPFRLT   + +  P     V
Sbjct: 3936 IGDRHLNNFMVSMETGGLIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKEAGV 3995

Query: 72   ALS 74
              S
Sbjct: 3996 VYS 3998

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Also involved in modulation of transcription. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism. Phosphorylates DCLRE1C, C1D, c-Abl/ABL1, histone H1, HSPCA, c-jun/JUN, p53/TP53, PARP1, POU2F1, DHX9, SRF, XRCC1, XRCC4, XRCC5, XRCC6, WRN, MYC and RFA2. Can phosphorylate C1D not only in the presence of linear DNA but also in the presence of supercoiled DNA. Ability to phosphorylate p53/TP53 in the presence of supercoiled DNA is dependent on C1D.

Canis familiaris (taxid: 9615)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
            IGDRHL N +V  +TG  +GIDFG++FG ATQ LP+PELMPFRLT   + +  P
Sbjct: 3920 IGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLP 3973

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Also involved in modulation of transcription. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism. Phosphorylates DCLRE1C, c-Abl/ABL1, histone H1, HSPCA, c-jun/JUN, p53/TP53, PARP1, POU2F1, DHX9, SRF, XRCC1, XRCC1, XRCC4, XRCC5, XRCC6, WRN, MYC and RFA2. Can phosphorylate C1D not only in the presence of linear DNA but also in the presence of supercoiled DNA. Ability to phosphorylate p53/TP53 in the presence of supercoiled DNA is dependent on C1D.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8QGX4|PRKDC_CHICK DNA-dependent protein kinase catalytic subunit OS=Gallus gallus GN=PRKDC PE=2 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
            IGDRHL N ++  +TG  VGIDFG++FG ATQ LP+PELMPFRLT   + +  P
Sbjct: 3926 IGDRHLSNFMINKETGGMVGIDFGHAFGSATQFLPVPELMPFRLTRQFVNLMMP 3979

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P0CP60|ATM_CRYNJ Serine/threonine-protein kinase TEL1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TEL1 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLT 56
            IGDRH  N L+   TG  V IDFG +FG A ++LPIPEL+PFRLT
Sbjct: 2805 IGDRHCSNILMDECTGELVHIDFGIAFG-AGRILPIPELVPFRLT 2848

Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P0CP61|ATM_CRYNB Serine/threonine-protein kinase TEL1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TEL1 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLT 56
            IGDRH  N L+   TG  V IDFG +FG A ++LPIPEL+PFRLT
Sbjct: 2806 IGDRHCSNILMDECTGELVHIDFGIAFG-AGRILPIPELVPFRLT 2849

Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6CP76|ATM_KLULA Serine/threonine-protein kinase TEL1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TEL1 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHIL 60
            +GDRHL N L+  KTG  + ID G +F    +LLPIPEL+PFRLT  I+
Sbjct: 2580 LGDRHLNNILIDIKTGEPIHIDLGVAFDQG-KLLPIPELVPFRLTRDIV 2627

Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q7RZT9|ATM_NEUCR Serine/threonine-protein kinase tel-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tel-1 PE=3 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHIL 60
            +GDRH  N L+ TKTG  V ID G +F +  ++LP+PEL+PFRLT  I+
Sbjct: 2756 LGDRHGHNILLDTKTGEVVHIDLGVAFELG-RILPVPELVPFRLTRDIV 2803

Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
189234155	2349	PREDICTED: similar to protein kinase, DN	0.695	0.024	0.631	2e-17
270002715	3670	hypothetical protein TcasGA2_TC016161 [T	0.695	0.015	0.631	2e-17
339241493	418	DNA-dependent protein kinase catalytic s	0.792	0.155	0.597	1e-14
384485391	1980	hypothetical protein RO3G_02275 [Rhizopu	0.756	0.031	0.569	4e-14
111226581	4299	DNA-dependent protein kinase subunit [Di	0.695	0.013	0.614	2e-13
328701273	673	PREDICTED: DNA-dependent protein kinase	0.658	0.080	0.592	2e-13
302832167	3901	hypothetical protein VOLCADRAFT_87995 [V	0.731	0.015	0.583	2e-13
290995959	4423	DNA dependent protein kinase catalytic s	0.658	0.012	0.629	5e-13
390355670	1675	PREDICTED: DNA-dependent protein kinase	0.658	0.032	0.666	8e-13
390355668	1974	PREDICTED: DNA-dependent protein kinase	0.658	0.027	0.666	8e-13

>gi|189234155|ref|XP_970757.2| PREDICTED: similar to protein kinase, DNA activated, catalytic polypeptide [Tribolium castaneum]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 49/57 (85%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGS 68
            +GDRHL N+LVC  +G+ +GIDFG++FG ATQ+LP+PEL+PFRLTPHI+ + EP G+
Sbjct: 2147 VGDRHLSNSLVCLNSGKVLGIDFGHAFGTATQILPVPELVPFRLTPHIVNLMEPLGA 2203

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002715|gb|EEZ99162.1| hypothetical protein TcasGA2_TC016161 [Tribolium castaneum]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 49/57 (85%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGS 68
            +GDRHL N+LVC  +G+ +GIDFG++FG ATQ+LP+PEL+PFRLTPHI+ + EP G+
Sbjct: 3468 VGDRHLSNSLVCLNSGKVLGIDFGHAFGTATQILPVPELVPFRLTPHIVNLMEPLGA 3524

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|339241493|ref|XP_003376672.1| DNA-dependent protein kinase catalytic subunit [Trichinella spiralis] gi|316974599|gb|EFV58083.1| DNA-dependent protein kinase catalytic subunit [Trichinella spiralis]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 2/67 (2%)

Query: 1   MNNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHIL 60
           M+ ++ LLE  IGDRHL N ++ TKTG  +GIDFGY+FG + Q LPIPELMPFRLT   +
Sbjct: 185 MSIANYLLE--IGDRHLGNIVLDTKTGEVIGIDFGYAFGASLQYLPIPELMPFRLTKQFV 242

Query: 61  AVNEPYG 67
            V EP G
Sbjct: 243 GVVEPVG 249

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|384485391|gb|EIE77571.1| hypothetical protein RO3G_02275 [Rhizopus delemar RA 99-880]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 3/65 (4%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQ-- 69
            IGDRHLEN L+  K+GR + IDFG++FG AT++LPIPE++PFRLTP ++   EP G    
Sbjct: 1762 IGDRHLENFLLDLKSGRLIPIDFGHAFGSATEMLPIPEIVPFRLTPQLIGALEPLGVSGI 1821

Query: 70   -EVAL 73
             EVA+
Sbjct: 1822 LEVAM 1826

Source: Rhizopus delemar RA 99-880

Species: Rhizopus delemar

Genus: Rhizopus

Family: Rhizopodaceae

Order: Mucorales

Superkingdom: Eukaryota

>gi|111226581|ref|XP_640856.2| DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4] gi|122086252|sp|Q54UC0.2|PRKDC_DICDI RecName: Full=DNA-dependent protein kinase catalytic subunit; Short=DNA-PK catalytic subunit; Short=DNA-PKcs gi|90970659|gb|EAL66880.2| DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGS 68
            IGDRHLEN L+  + GR +GIDFG++FG ATQ LPIPELMPFRLT    +   P  S
Sbjct: 4093 IGDRHLENFLISQRDGRLIGIDFGHAFGTATQFLPIPELMPFRLTRQFTSFLRPLDS 4149

Source: Dictyostelium discoideum AX4

Species: Dictyostelium discoideum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|328701273|ref|XP_003241549.1| PREDICTED: DNA-dependent protein kinase catalytic subunit-like [Acyrthosiphon pisum]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 44/54 (81%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
           IGDRHL+NT+V TKTG C+GIDF ++F  AT +  IPEL+PFR++PHI+++  P
Sbjct: 466 IGDRHLDNTIVSTKTGFCIGIDFNFAFHTATSIQVIPELIPFRMSPHIVSLMTP 519

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|302832167|ref|XP_002947648.1| hypothetical protein VOLCADRAFT_87995 [Volvox carteri f. nagariensis] gi|300266996|gb|EFJ51181.1| hypothetical protein VOLCADRAFT_87995 [Volvox carteri f. nagariensis]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 44/60 (73%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEV 71
            +GDRH  N L+   TGR V IDFGYS G ATQ++PIPEL+PFRLTP +L   +P+  +EV
Sbjct: 3645 VGDRHTSNLLLQPATGRLVHIDFGYSLGAATQVVPIPELVPFRLTPQLLGALQPHCGKEV 3704

Source: Volvox carteri f. nagariensis

Species: Volvox carteri

Genus: Volvox

Family: Volvocaceae

Order: Chlamydomonadales

Class: Chlorophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|290995959|ref|XP_002680550.1| DNA dependent protein kinase catalytic subunit [Naegleria gruberi] gi|284094171|gb|EFC47806.1| DNA dependent protein kinase catalytic subunit [Naegleria gruberi]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
            IGDRHLEN LV    G  +GIDFG++FG AT++LP+PELMPFRLT  +LA+  P
Sbjct: 4188 IGDRHLENFLVDFSEGSLIGIDFGHAFGSATEILPVPELMPFRLTRQMLAIFSP 4241

Source: Naegleria gruberi

Species: Naegleria gruberi

Genus: Naegleria

Family: Vahlkampfiidae

Order: Schizopyrenida

Class: Heterolobosea

Superkingdom: Eukaryota

>gi|390355670|ref|XP_003728605.1| PREDICTED: DNA-dependent protein kinase catalytic subunit-like isoform 1 [Strongylocentrotus purpuratus]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 41/54 (75%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
            IGDRHL N LV  +TG  VGIDFG+SFG ATQ LPIPEL+PFRLT  I+ +  P
Sbjct: 1465 IGDRHLSNFLVSLETGGMVGIDFGHSFGSATQFLPIPELIPFRLTRQIINLMLP 1518

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390355668|ref|XP_781813.3| PREDICTED: DNA-dependent protein kinase catalytic subunit-like isoform 2 [Strongylocentrotus purpuratus]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 41/54 (75%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
            IGDRHL N LV  +TG  VGIDFG+SFG ATQ LPIPEL+PFRLT  I+ +  P
Sbjct: 1764 IGDRHLSNFLVSLETGGMVGIDFGHSFGSATQFLPIPELIPFRLTRQIINLMLP 1817

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
DICTYBASE|DDB_G0281167	4299	dnapkcs "DNA-dependent protein	0.695	0.013	0.614	2.8e-12
ZFIN|ZDB-GENE-030131-9008	4119	wu:fa96e12 "wu:fa96e12" [Danio	0.658	0.013	0.592	1.5e-11
MGI|MGI:104779	4128	Prkdc "protein kinase, DNA act	0.658	0.013	0.592	2.5e-11
UNIPROTKB|F1Q3H1	4135	PRKDC "DNA-dependent protein k	0.768	0.015	0.539	5e-11
UNIPROTKB|Q8WN22	4144	PRKDC "DNA-dependent protein k	0.768	0.015	0.539	5e-11
UNIPROTKB|Q9DEI1	4146	prkdc "DNA-dependent protein k	0.658	0.013	0.592	5e-11
UNIPROTKB|E7EUY0	4096	PRKDC "DNA-dependent protein k	0.658	0.013	0.592	5.1e-11
UNIPROTKB|P78527	4128	PRKDC "DNA-dependent protein k	0.658	0.013	0.592	5.1e-11
UNIPROTKB|F1RSE6	4133	F1RSE6 "Uncharacterized protei	0.658	0.013	0.592	6.5e-11
UNIPROTKB|F1NQD1	4134	PRKDC "DNA-dependent protein k	0.658	0.013	0.592	1.1e-10

DICTYBASE|DDB_G0281167 dnapkcs "DNA-dependent protein kinase catalytic subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 184 (69.8 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query:    12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGS 68
             IGDRHLEN L+  + GR +GIDFG++FG ATQ LPIPELMPFRLT    +   P  S
Sbjct:  4093 IGDRHLENFLISQRDGRLIGIDFGHAFGTATQFLPIPELMPFRLTRQFTSFLRPLDS 4149

GO:0006974 "response to DNA damage stimulus" evidence=IEA;IMP

GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=ISS

GO:0006975 "DNA damage induced protein phosphorylation" evidence=IMP

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030131-9008 wu:fa96e12 "wu:fa96e12" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query:    12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
             IGDRHL N ++ T+TG  +GIDFG++FG ATQ LP+PELMPFRLT   + +  P
Sbjct:  3911 IGDRHLSNFMINTETGGMIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMRP 3964

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

MGI|MGI:104779 Prkdc "protein kinase, DNA activated, catalytic polypeptide" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query:    12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
             IGDRHL N +V  +TG  +GIDFG++FG ATQ LP+PELMPFRLT   +++  P
Sbjct:  3920 IGDRHLNNFMVAMETGSVIGIDFGHAFGSATQFLPVPELMPFRLTRQFVSLMLP 3973

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000723 "telomere maintenance" evidence=IMP

GO:0001756 "somitogenesis" evidence=IGI

GO:0002326 "B cell lineage commitment" evidence=IMP

GO:0002328 "pro-B cell differentiation" evidence=IMP

GO:0002360 "T cell lineage commitment" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004677 "DNA-dependent protein kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005667 "transcription factor complex" evidence=ISO

GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IMP

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0006915 "apoptotic process" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007420 "brain development" evidence=IGI

GO:0007507 "heart development" evidence=IGI

GO:0008134 "transcription factor binding" evidence=ISO

GO:0010332 "response to gamma radiation" evidence=IMP

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO

GO:0019899 "enzyme binding" evidence=IPI

GO:0030098 "lymphocyte differentiation" evidence=IMP

GO:0031648 "protein destabilization" evidence=IDA

GO:0032869 "cellular response to insulin stimulus" evidence=ISO

GO:0033077 "T cell differentiation in thymus" evidence=IMP

GO:0033152 "immunoglobulin V(D)J recombination" evidence=IMP

GO:0033153 "T cell receptor V(D)J recombination" evidence=IMP

GO:0035234 "germ cell programmed cell death" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0070419 "nonhomologous end joining complex" evidence=ISO

UNIPROTKB|F1Q3H1 PRKDC "DNA-dependent protein kinase catalytic subunit" [Canis lupus familiaris (taxid:9615)]

 Score = 172 (65.6 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
 Identities = 34/63 (53%), Positives = 42/63 (66%)

Query:    12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEV 71
             IGDRHL N +V  +TG  +GIDFG++FG ATQ LP+PELMPFRLT   + +  P     V
Sbjct:  3927 IGDRHLNNFMVSMETGGLIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKEAGV 3986

Query:    72 ALS 74
               S
Sbjct:  3987 VYS 3989

GO:0005524 "ATP binding" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q8WN22 PRKDC "DNA-dependent protein kinase catalytic subunit" [Canis lupus familiaris (taxid:9615)]

 Score = 172 (65.6 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
 Identities = 34/63 (53%), Positives = 42/63 (66%)

Query:    12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEV 71
             IGDRHL N +V  +TG  +GIDFG++FG ATQ LP+PELMPFRLT   + +  P     V
Sbjct:  3936 IGDRHLNNFMVSMETGGLIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKEAGV 3995

Query:    72 ALS 74
               S
Sbjct:  3996 VYS 3998

GO:0070419 "nonhomologous end joining complex" evidence=ISS

GO:0005730 "nucleolus" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

UNIPROTKB|Q9DEI1 prkdc "DNA-dependent protein kinase catalytic subunit" [Xenopus laevis (taxid:8355)]

 Score = 173 (66.0 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query:    12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
             IGDRHL N ++  +TG  +GIDFG++FG ATQ LP+PELMPFRLT  I+ +  P
Sbjct:  3938 IGDRHLSNFMINMETGGMIGIDFGHAFGTATQFLPVPELMPFRLTRQIVNLMLP 3991

GO:0070419 "nonhomologous end joining complex" evidence=ISS

UNIPROTKB|E7EUY0 PRKDC "DNA-dependent protein kinase catalytic subunit" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query:    12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
             IGDRHL N +V  +TG  +GIDFG++FG ATQ LP+PELMPFRLT   + +  P
Sbjct:  3888 IGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLP 3941

GO:0003677 "DNA binding" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P78527 PRKDC "DNA-dependent protein kinase catalytic subunit" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query:    12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
             IGDRHL N +V  +TG  +GIDFG++FG ATQ LP+PELMPFRLT   + +  P
Sbjct:  3920 IGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLP 3973

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000723 "telomere maintenance" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0002326 "B cell lineage commitment" evidence=IEA

GO:0002328 "pro-B cell differentiation" evidence=IEA

GO:0002360 "T cell lineage commitment" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0010332 "response to gamma radiation" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0031648 "protein destabilization" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0033152 "immunoglobulin V(D)J recombination" evidence=IEA

GO:0033153 "T cell receptor V(D)J recombination" evidence=IEA

GO:0035234 "germ cell programmed cell death" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0070419 "nonhomologous end joining complex" evidence=IDA

GO:0004672 "protein kinase activity" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0004677 "DNA-dependent protein kinase activity" evidence=IDA

GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex" evidence=IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006302 "double-strand break repair" evidence=TAS

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=TAS

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0032869 "cellular response to insulin stimulus" evidence=IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0005667 "transcription factor complex" evidence=IDA

UNIPROTKB|F1RSE6 F1RSE6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 171 (65.3 bits), Expect = 6.5e-11, P = 6.5e-11
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query:    12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
             IGDRHL N +V  +TG  +GIDFG++FG ATQ LP+PELMPFRLT   + +  P
Sbjct:  3925 IGDRHLNNFMVSLETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLP 3978

GO:0005524 "ATP binding" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1NQD1 PRKDC "DNA-dependent protein kinase catalytic subunit" [Gallus gallus (taxid:9031)]

 Score = 169 (64.5 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query:    12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEP 65
             IGDRHL N ++  +TG  VGIDFG++FG ATQ LP+PELMPFRLT   + +  P
Sbjct:  3926 IGDRHLSNFMINKETGGMVGIDFGHAFGSATQFLPVPELMPFRLTRQFVNLMMP 3979

GO:0003677 "DNA binding" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P78527	PRKDC_HUMAN	2, ., 7, ., 1, 1, ., 1	0.5925	0.6585	0.0130	yes	N/A
Q8QGX4	PRKDC_CHICK	2, ., 7, ., 1, 1, ., 1	0.5925	0.6585	0.0130	yes	N/A
Q6CP76	ATM_KLULA	2, ., 7, ., 1, 1, ., 1	0.5510	0.5853	0.0173	yes	N/A
P38110	ATM_YEAST	2, ., 7, ., 1, 1, ., 1	0.5306	0.5853	0.0172	yes	N/A
P0CP60	ATM_CRYNJ	2, ., 7, ., 1, 1, ., 1	0.6222	0.5365	0.0148	yes	N/A
P97313	PRKDC_MOUSE	2, ., 7, ., 1, 1, ., 1	0.5925	0.6585	0.0130	yes	N/A
Q4IB89	ATM_GIBZE	2, ., 7, ., 1, 1, ., 1	0.5102	0.5853	0.0170	yes	N/A
Q54UC0	PRKDC_DICDI	2, ., 7, ., 1, 1, ., 1	0.6140	0.6951	0.0132	yes	N/A
Q8WN22	PRKDC_CANFA	2, ., 7, ., 1, 1, ., 1	0.5396	0.7682	0.0152	yes	N/A
Q6FRZ9	ATM_CANGA	2, ., 7, ., 1, 1, ., 1	0.5306	0.5853	0.0173	yes	N/A
Q6CAD2	ATM_YARLI	2, ., 7, ., 1, 1, ., 1	0.5111	0.5365	0.0192	yes	N/A
Q751J3	ATM_ASHGO	2, ., 7, ., 1, 1, ., 1	0.5102	0.5853	0.0173	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	82
cd05172	235	cd05172, PIKKc_DNA-PK, DNA-dependent protein kinas	2e-27
smart00146	240	smart00146, PI3Kc, Phosphoinositide 3-kinase, cata	2e-16
cd05164	222	cd05164, PIKKc, Phosphoinositide 3-kinase-related	2e-15
pfam00454	233	pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3-	2e-15
cd00892	237	cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and	4e-13
cd05171	279	cd05171, PIKKc_ATM, Ataxia telangiectasia mutated	1e-12
cd00142	219	cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI	2e-12
COG5032	2105	COG5032, TEL1, Phosphatidylinositol kinase and pro	6e-11
cd05169	280	cd05169, PIKKc_TOR, TOR (Target of rapamycin), cat	6e-10
cd05170	307	cd05170, PIKKc_SMG1, Suppressor of morphogenetic e	6e-08
cd00896	350	cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3	4e-07
cd00891	352	cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K),	4e-06
cd00894	365	cd00894, PI3Kc_IB_gamma, Phosphoinositide 3-kinase	1e-05
cd05165	366	cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K)	6e-04
cd05173	362	cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase	0.004

>gnl|CDD|119432 cd05172, PIKKc_DNA-PK, DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 98.9 bits (247), Expect = 2e-27
 Identities = 37/57 (64%), Positives = 43/57 (75%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGS 68
           IGDRHL N LV  +TG  VGIDFG++FG ATQ LPIPELMPFRLTP  + + EP  +
Sbjct: 140 IGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKA 196

DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double strand breaks (DSBs) by joining together two free DNA ends of little homology. DNA-PK functions as a molecular sensor for DNA damage that enhances the signal via phosphorylation of downstream targets. It may also act as a protein scaffold that aids the localization of DNA repair proteins to the site of DNA damage. DNA-PK also plays a role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Length = 235

>gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain

 Score = 70.0 bits (172), Expect = 2e-16
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAV 62
           +GDRH +N ++  KTG    IDFG+  G   +L   PE +PFRLTP ++ V
Sbjct: 144 LGDRHNDNIML-DKTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDV 193

Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities. Length = 240

>gnl|CDD|119424 cd05164, PIKKc, Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 67.0 bits (164), Expect = 2e-15
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQ 69
           +GDRHL+N L+  +TG  V IDFG  F      LP+PEL+PFRLT +I+      G +
Sbjct: 135 LGDRHLDNILIDRETGEVVHIDFGCIFEKGKT-LPVPELVPFRLTRNIINGMGITGVE 191

Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) domain. PIKKs have diverse functions including cell-cycle checkpoints, genome surveillance, mRNA surveillance, and translation control. Length = 222

>gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase

 Score = 67.4 bits (165), Expect = 2e-15
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTP 57
            GDRHL+N LV   TG+   IDFG  F  A +  P PE +PFRLT 
Sbjct: 136 NGDRHLDNILVDKTTGKLFHIDFGLCFPKA-KRGPKPERVPFRLTR 180

Some members of this family probably do not have lipid kinase activity and are protein kinases, . Length = 233

>gnl|CDD|119418 cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 61.1 bits (149), Expect = 4e-13
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 13  GDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYG 67
           GDRH EN L  + TG  V +DF   F      L +PE +PFRLT +++      G
Sbjct: 144 GDRHGENILFDSNTGDVVHVDFNCLFDKGE-TLEVPERVPFRLTQNMVDAMGVLG 197

ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central role in regulating the replication checkpoint. ATR stabilizes replication forks by promoting the association of DNA polymerases with the fork. Preventing fork collapse is essential in preserving genomic integrity. ATR plays a role in normal cell growth and in response to DNA damage. Length = 237

>gnl|CDD|119431 cd05171, PIKKc_ATM, Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 60.3 bits (147), Expect = 1e-12
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHIL 60
           +GDRH  N L+  KT   V ID G +F    ++LP+PE +PFRLT  I+
Sbjct: 185 LGDRHANNILIDEKTAEVVHIDLGIAFE-QGKILPVPETVPFRLTRDIV 232

ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transition. Patients with the human genetic disorder Ataxia telangiectasia (A-T), caused by truncating mutations in ATM, show genome instability, increased cancer risk, immunodeficiency, compromised mobility, and neurodegeneration. A-T displays clinical heterogeneity, which is correlated to the degree of retained ATM activity. Length = 279

>gnl|CDD|119416 cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTP 57
           IGDRH +N ++   TG+   IDFG+ FG   + L   E +PFRLTP
Sbjct: 132 IGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLG-RERVPFRLTP 176

Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI4Ks produce PtdIns(4)P, the major precursor to important signaling phosphoinositides. PIKKs have diverse functions including cell-cycle checkpoints, genome surveillance, mRNA surveillance, and translation control. Length = 219

>gnl|CDD|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]

 Score = 55.9 bits (135), Expect = 6e-11
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 12   IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYG 67
            +GDRH  N L+   +G  + IDFG+    A    P PE +PFRLT +I+      G
Sbjct: 1946 LGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSG 2001

Length = 2105

>gnl|CDD|119429 cd05169, PIKKc_TOR, TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 52.9 bits (128), Expect = 6e-10
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLT 56
           +GDRH  N ++   TG+ + IDFG  F VA      PE +PFRLT
Sbjct: 185 LGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLT 229

TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with other proteins to form two distinct complexes, TORC1 and TORC2. TORC1 is involved in diverse growth-related functions including protein synthesis, nutrient use and transport, autophagy and stress responses. TORC2 is involved in organizing cytoskeletal structures. Length = 280

>gnl|CDD|119430 cd05170, PIKKc_SMG1, Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 47.4 bits (113), Expect = 6e-08
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHI 59
           +GDRHL+N L+  KTG  V ID+   F    + L IPE +PFR+T +I
Sbjct: 213 LGDRHLDNVLIDLKTGEVVHIDYNVCFEKG-KSLRIPEKVPFRMTQNI 259

SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by genome mutations and by errors during transcription and splicing. SMG-1 phosphorylates Upf1, another central component of NMD, at the C-terminus upon recognition of PTCs. The phosphorylation/dephosphorylation cycle of Upf1 is essential for promoting NMD. Length = 307

>gnl|CDD|119422 cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP 48
           +GDRHL+N L+ TK G+   IDFGY  G   +  P P
Sbjct: 206 VGDRHLDNLLL-TKDGKLFHIDFGYILGRDPKPFPPP 241

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. They phosphorylate only the substrate PtdIns. They interact with a regulatory subunit, Vps15, to form a membrane-associated complex. Class III PI3Ks are involved in protein and vesicular trafficking and sorting, autophagy, trimeric G-protein signaling, and phagocytosis. Length = 350

>gnl|CDD|119417 cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 42.2 bits (100), Expect = 4e-06
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFRLTPHILAV 62
           IGDRH +N ++ TKTG    IDFG+  G   +   I  E  PF LTP +  V
Sbjct: 207 IGDRHNDNIML-TKTGHLFHIDFGHFLGNFKKKFGIKRERAPFVLTPDMAYV 257

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class II PI3Ks comprise three catalytic isoforms that do not associate with any regulatory subunits. They selectively use PtdIns as a susbtrate to produce PtsIns(3)P. Length = 352

>gnl|CDD|119420 cd00894, PI3Kc_IB_gamma, Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 216 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 266

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). PI3Kgamma associates with one of two regulatory subunits, p101 and p84. It is activated by G-protein-coupled receptors (GPCRs) by direct binding to their betagamma subunits. It contains an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. PI3Kgamma signaling controls diverse immune and vascular functions including cell recruitment, mast cell activation, platelet aggregation, and smooth muscle contractility. Length = 365

>gnl|CDD|119425 cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFRLTPHILAV 62
           IGDRH +N +V  +TG+   IDFG+  G       I  E +PF LTP  + V
Sbjct: 216 IGDRHNDNIMV-KETGQLFHIDFGHILGNYKSKFGINRERVPFVLTPDFVHV 266

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates PtdIns and PtdIns(4)P. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). Length = 366

>gnl|CDD|119433 cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFRLT 56
           IGDRH +N +V  K G+   IDFG+  G       I  E +PF LT
Sbjct: 212 IGDRHSDNIMV-RKNGQLFHIDFGHILGNFKSKFGIKRERVPFILT 256

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). Class IA enzymes contain an N-terminal p85 binding domain, a Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. They associate with a regulatory subunit of the p85 family and are activated by tyrosine kinase receptors. In addition, PI3Kbeta can also be activated by G-protein-coupled receptors. Deletion of PI3Kbeta in mice results in early lethality at around day three of development. PI3Kbeta plays an important role in regulating sustained integrin activation and stable platelet agrregation, especially under conditions of high shear stress. Length = 362

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
cd05172	235	PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK)	99.97
cd05169	280	PIKKc_TOR TOR (Target of rapamycin), catalytic dom	99.97
cd05163	253	TRRAP TRansformation/tRanscription domain-Associat	99.97
cd05171	279	PIKKc_ATM Ataxia telangiectasia mutated (ATM), cat	99.97
cd05170	307	PIKKc_SMG1 Suppressor of morphogenetic effect on g	99.97
cd00892	237	PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-rela	99.96
cd05164	222	PIKKc Phosphoinositide 3-kinase-related protein ki	99.96
cd00142	219	PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like f	99.96
smart00146	202	PI3Kc Phosphoinositide 3-kinase, catalytic domain.	99.95
cd05168	293	PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), T	99.95
cd00893	289	PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type I	99.94
KOG0890|consensus	2382		99.94
cd05165	366	PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I,	99.94
cd00891	352	PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic	99.94
KOG0892|consensus	2806		99.93
cd05167	311	PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K),	99.93
cd00894	365	PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), c	99.93
cd00896	350	PI3Kc_III Phosphoinositide 3-kinase (PI3K), class	99.93
PF00454	235	PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kina	99.92
COG5032	2105	TEL1 Phosphatidylinositol kinase and protein kinas	99.92
cd05173	362	PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), cl	99.92
cd05174	361	PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), c	99.92
cd05166	353	PI3Kc_II Phosphoinositide 3-kinase (PI3K), class I	99.91
cd05175	366	PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), c	99.91
cd05176	353	PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), c	99.91
cd05177	354	PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), c	99.91
cd00895	354	PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), cl	99.89
KOG0904|consensus	1076		99.8
KOG0903|consensus	847		99.75
KOG0906|consensus	843		99.74
KOG0891|consensus	2341		99.65
KOG0902|consensus	1803		99.59
KOG0905|consensus	1639		99.59
PTZ00303	1374	phosphatidylinositol kinase; Provisional	99.47
KOG0889|consensus	3550		98.9
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	92.57
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	92.36
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	91.39
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	91.13
COG0661	517	AarF Predicted unusual protein kinase [General fun	91.02
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	90.71
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	89.67
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	89.45
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	89.42
TIGR03843	253	conserved hypothetical protein. This model represe	89.21
PRK14879	211	serine/threonine protein kinase; Provisional	89.02
PF01636	239	APH: Phosphotransferase enzyme family This family	88.92
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	88.48
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	87.77
KOG0616|consensus	355		87.21
smart00090	237	RIO RIO-like kinase.	86.41
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	86.07
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	84.71
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	84.46
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	84.41
KOG0608|consensus	1034		83.36
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	83.18
KOG0984|consensus	282		82.52
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	81.96
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	81.85
KOG0598|consensus	357		81.18
PRK12274	218	serine/threonine protein kinase; Provisional	81.08

>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.97  E-value=2e-33  Score=200.73  Aligned_cols=75  Identities=51%  Similarity=0.747  Sum_probs=71.0

Q ss_pred             ccceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheeeeE
Q psy16910          2 NNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSE   76 (82)
Q Consensus         2 ~~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~~~   76 (82)
                      ..|++||++|||||||+|||+++.||+++|||||++|+.+++.+++||.|||||||||+++||+.|+||.|++++
T Consensus       130 ~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~G~f~~~~  204 (235)
T cd05172         130 AMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKADGLLRSCM  204 (235)
T ss_pred             HHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCCChHHHHH
Confidence            368999999999999999999999999999999999999988889999999999999999999999999998643

DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st

>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.97  E-value=9.8e-33  Score=200.08  Aligned_cols=73  Identities=32%  Similarity=0.442  Sum_probs=69.1

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheeee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSS   75 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~~   75 (82)
                      .|++|||+|||||||+|||+|+.||+++|||||++|++++...++||.|||||||||+++||+.|+||.|+.+
T Consensus       176 ~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~~g~~G~F~~~  248 (280)
T cd05169         176 MSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGVSGIEGTFRTT  248 (280)
T ss_pred             HHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCCCCCCCchHHH
Confidence            5899999999999999999999999999999999999997667889999999999999999999999999854

TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with

>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.97  E-value=5.6e-32  Score=195.00  Aligned_cols=74  Identities=28%  Similarity=0.341  Sum_probs=70.3

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheeeeE
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSE   76 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~~~   76 (82)
                      .|+++||+|+|||||+|||+++.||+++||||+++|+++...++.||.|||||||||+++||+.|+||.|++++
T Consensus       149 ~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g~~g~eG~f~~~~  222 (253)
T cd05163         149 LSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIGPIGLEGILTSSM  222 (253)
T ss_pred             HHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhCCcCcCCcHHHHH
Confidence            58999999999999999999999999999999999999987778999999999999999999999999998654

TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat

>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.97  E-value=6.6e-32  Score=196.46  Aligned_cols=73  Identities=36%  Similarity=0.485  Sum_probs=69.3

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheeeeE
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSE   76 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~~~   76 (82)
                      .|++|||+|||||||+|||+++.||+++||||+++|+++++ ++.||.|||||||||+++||+.|+||.|+.++
T Consensus       176 ~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~-l~~pe~vPFRLT~~~~~~lg~~g~~g~f~~~~  248 (279)
T cd05171         176 SSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKI-LPVPETVPFRLTRDIVDGMGITGVEGVFRRCC  248 (279)
T ss_pred             HHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcC-CCCCCcCChhhhHHHHHHhCCCCCcchHHHHH
Confidence            58999999999999999999999999999999999999976 89999999999999999999999999998543

ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi

>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.97  E-value=1.6e-31  Score=196.78  Aligned_cols=73  Identities=37%  Similarity=0.477  Sum_probs=68.9

Q ss_pred             ccceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheeee
Q psy16910          2 NNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSS   75 (82)
Q Consensus         2 ~~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~~   75 (82)
                      ..|+++||+|||||||+||||++.||+++|||||++|++++ .+++||.|||||||||+++||+.|+||.|+.+
T Consensus       203 ~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f~~~~-~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~  275 (307)
T cd05170         203 VMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFEKGK-SLRIPEKVPFRMTQNIETALGLTGVEGVFRLS  275 (307)
T ss_pred             HHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhhcccC-CCCCCCCCCeeeCHHHHHHhCCCCCchhHHHH
Confidence            36899999999999999999999999999999999999985 58899999999999999999999999999854

SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno

>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.96  E-value=3.5e-31  Score=189.26  Aligned_cols=72  Identities=33%  Similarity=0.470  Sum_probs=67.9

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheeee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSS   75 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~~   75 (82)
                      .|+++||+|||||||+|||+++.||+++|||||++|+.++ .++.||.|||||||||++++|+.|++|.|+.+
T Consensus       134 ~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~-~~~~pe~vPFRLT~~~~~~lg~~g~~g~F~~~  205 (237)
T cd00892         134 MSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGE-TLEVPERVPFRLTQNMVDAMGVLGVEGLFRKS  205 (237)
T ss_pred             HHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccc-cCCCCCCCCcccCHHHHHHhCCCCCCCchHHH
Confidence            5899999999999999999998899999999999999984 57899999999999999999999999999753

ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central

>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.96  E-value=5.6e-31  Score=186.59  Aligned_cols=73  Identities=38%  Similarity=0.551  Sum_probs=68.1

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheeeeE
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSE   76 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~~~   76 (82)
                      .|+++|++|+|||||+|||+++.||+++||||+++|+.++ .++.||.|||||||||+++||+.|++|.|+.++
T Consensus       126 ~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~-~~~~~e~vPFRLT~~~~~~lg~~g~~G~f~~~~  198 (222)
T cd05164         126 MSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGK-TLPVPELVPFRLTRNIINGMGITGVEGLFRKIC  198 (222)
T ss_pred             HHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCC-CCCCCCCCCEEeCHHHHHHhCCCCcCChHHHHH
Confidence            5899999999999999999999999999999999999986 467799999999999999999999999998543

Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d

>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.96  E-value=3.5e-30  Score=181.49  Aligned_cols=72  Identities=35%  Similarity=0.482  Sum_probs=67.1

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheeee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSS   75 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~~   75 (82)
                      .|+++|++|||||||+|||+++.||+++|||||++|+.+++... +|.|||||||||+++||+.|.+|.|+.+
T Consensus       123 ~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~-~e~vPFRLT~~~~~~~g~~~~~g~F~~~  194 (219)
T cd00142         123 YSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLG-RERVPFRLTPDLVNALGTGGVFGPFRSL  194 (219)
T ss_pred             HHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCC-CCCCCEeccHHHHHHhCCcchhhhHHHH
Confidence            58999999999999999999988999999999999999976544 9999999999999999999999999854

Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the

>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain

Probab=99.95  E-value=5.1e-30  Score=178.65  Aligned_cols=72  Identities=36%  Similarity=0.568  Sum_probs=67.5

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheeee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSS   75 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~~   75 (82)
                      .|+++|++|+|||||+||||+ +||+++|||||++|+++++....+|.|||||||||+++||+.|.+|.|+..
T Consensus        96 ~s~~~YilglgDRh~~NIli~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~  167 (202)
T smart00146       96 YSVITYILGLGDRHNDNIMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSL  167 (202)
T ss_pred             HHHHHHHhcCCCCCCCcEEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHH
Confidence            589999999999999999999 899999999999999998766666999999999999999999999999753

Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.

>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.95  E-value=5.3e-29  Score=183.26  Aligned_cols=70  Identities=27%  Similarity=0.311  Sum_probs=64.1

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCc--hheee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQ--EVALS   74 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~e--G~f~~   74 (82)
                      .|++||||||||||++||||++ +|+++|||||++|+.+++. ..+|+||||||++|+++||+.+++  |.|+.
T Consensus       136 ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~-~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~  207 (293)
T cd05168         136 YSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGN-VGFETAPFKLTQEYIEVMGGVNSDLFNYFKK  207 (293)
T ss_pred             HHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccC-CCCCCCCEEecHHHHHHhCCCCCchhHHHHH
Confidence            5899999999999999999995 9999999999999999765 457999999999999999999987  77864

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII

>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.94  E-value=4.6e-29  Score=183.28  Aligned_cols=71  Identities=24%  Similarity=0.211  Sum_probs=63.5

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCc--hheee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQ--EVALS   74 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~e--G~f~~   74 (82)
                      -|++||||||||||++||||+ .+|+++|||||++|+.+++....+|.+|||||++|+++||+.+.+  +.|+.
T Consensus       134 ySvv~YiLgigDRH~~NILid-~~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f~~F~~  206 (289)
T cd00893         134 YSLLCYLLQIKDRHNGNILLD-SDGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDFKKFRY  206 (289)
T ss_pred             HHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhHHHHHH
Confidence            489999999999999999998 599999999999999997653447999999999999999999988  45653

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.

>KOG0890|consensus

Probab=99.94  E-value=1.7e-28  Score=210.40  Aligned_cols=76  Identities=36%  Similarity=0.593  Sum_probs=72.3

Q ss_pred             ceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchhee-eeEEeee
Q psy16910          4 SSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVAL-SSEVGFQ   80 (82)
Q Consensus         4 S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~-~~~~~~q   80 (82)
                      ||+|||||+||||.+|||+|..||+++|+||...|+++ +.+++||.||||||+||+++|||+|+||.|| +||+++.
T Consensus      2215 SmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCLFnKG-etlevPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLr 2291 (2382)
T KOG0890|consen 2215 SMVGYILGLGDRHGENILFDSTTGDCVHVDFNCLFNKG-ETLEVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLR 2291 (2382)
T ss_pred             HHHHHHhcCccccccceeeecCCCcEEEEeecccccCC-cccCCCCccceecchhHHhhcCCcccchhHHHHHHHHHH
Confidence            89999999999999999999999999999999999999 5799999999999999999999999999997 6888764

>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.94  E-value=4.4e-28  Score=182.84  Aligned_cols=71  Identities=31%  Similarity=0.397  Sum_probs=64.2

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCC-CCCCceeecHHHHHhhCCCCCc------hheee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAVNEPYGSQ------EVALS   74 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~-~E~vPFRLT~~~~~~~g~~g~e------G~f~~   74 (82)
                      -|++||+|||||||++||||+ .+|+++|||||++|+..++.+++ ||+||||||++|+++||+.|.+      |.|+.
T Consensus       207 ysvvtYiLGigDRH~~NILi~-~~G~l~HIDFG~ilg~~~~~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~  284 (366)
T cd05165         207 YCVATFVLGIGDRHNDNIMVK-ETGQLFHIDFGHILGNYKSKFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQD  284 (366)
T ss_pred             HHHHHHHhhccccCCcceEEc-CCCCEEEEehHHhhccCCccCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHH
Confidence            489999999999999999998 69999999999999998877775 9999999999999999987665      67764

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P

>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.94  E-value=6.3e-28  Score=181.03  Aligned_cols=71  Identities=31%  Similarity=0.358  Sum_probs=64.6

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCC-CCCCCceeecHHHHHhhCCCCCc--hheee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLP-IPELMPFRLTPHILAVNEPYGSQ--EVALS   74 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~-~~E~vPFRLT~~~~~~~g~~g~e--G~f~~   74 (82)
                      -|++||+|||||||++||||+ .+|+++|||||++|+..++.+. .||+||||||++|+++||+.|++  |.|+.
T Consensus       198 ysv~~YiLgigDRH~~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~  271 (352)
T cd00891         198 YCVATYVLGIGDRHNDNIMLT-KTGHLFHIDFGHFLGNFKKKFGIKRERAPFVLTPDMAYVMGGGDSEKFQRFED  271 (352)
T ss_pred             HHHHHHHccccccCCCceEEC-CCCCEEEEehHHhhccCCccCCCCCCCCCeeecHHHHHHhCCCCCcccchHHH
Confidence            489999999999999999998 7999999999999998876666 49999999999999999999976  77763

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c

>KOG0892|consensus

Probab=99.93  E-value=5.1e-28  Score=208.65  Aligned_cols=76  Identities=33%  Similarity=0.484  Sum_probs=71.3

Q ss_pred             ccceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchhee-eeEEe
Q psy16910          2 NNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVAL-SSEVG   78 (82)
Q Consensus         2 ~~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~-~~~~~   78 (82)
                      .+||+|||||+||||.+|||||..||+++|||+|-+|+.+ +.++.||.|||||||++++.||-+|+||+|| ||+.+
T Consensus      2619 ~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQG-kilptPE~VPFRLTRDiVdgmGItGveGvFrRccE~t 2695 (2806)
T KOG0892|consen 2619 ASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQG-KILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEFT 2695 (2806)
T ss_pred             HHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcC-CcCCCCCcccceeehhhccccCccCchHHHHHHHHHH
Confidence            3699999999999999999999999999999999999999 5799999999999999999999999999997 56543

>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.93  E-value=9.6e-28  Score=177.86  Aligned_cols=70  Identities=24%  Similarity=0.289  Sum_probs=62.0

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchhee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVAL   73 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~   73 (82)
                      -|++||+|||||||++||||+ .+|+++|||||++|+.+++....+|++|||||++|+++||+.+.++.|+
T Consensus       155 ysv~tYiLgigDRHn~NILid-~~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT~emv~~mGg~~~s~~f~  224 (311)
T cd05167         155 YSLISYLLQIKDRHNGNIMID-DDGHIIHIDFGFIFEISPGGNLKFESAPFKLTKEMVQIMGGSMEATPFK  224 (311)
T ss_pred             HHHHHHHhhccccCccceEEc-CCCCEEEEeeHHhhccCCCCCCCcCCCCEeecHHHHHHhCCCCcchhHH
Confidence            489999999999999999999 5999999999999999875423479999999999999999999666553

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole

>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.93  E-value=7.4e-27  Score=176.18  Aligned_cols=66  Identities=36%  Similarity=0.546  Sum_probs=60.3

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCC-CCCCceeecHHHHHhhCCCCCc
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAVNEPYGSQ   69 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~-~E~vPFRLT~~~~~~~g~~g~e   69 (82)
                      -|++||||||||||++||||+ .+|+++|||||++|+..++.+.+ +|++|||||++|+++||+.|.+
T Consensus       207 YsV~tYiLGIgDRHndNImi~-~~G~lfHIDFG~ilg~~~~~~gi~~E~~PFkLT~e~v~vmg~~gg~  273 (365)
T cd00894         207 YCVATFVLGIGDRHNDNIMIT-ETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKK  273 (365)
T ss_pred             HHHHHHhccccCccccceeEc-CCCCEEEEeeHHhhCCCCccCCCCCCCCCeeecHHHHHHhCccCCc
Confidence            489999999999999999998 79999999999999998766654 9999999999999999987655

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and

>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.93  E-value=3.9e-27  Score=176.73  Aligned_cols=67  Identities=30%  Similarity=0.460  Sum_probs=61.8

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCch--heee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQE--VALS   74 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG--~f~~   74 (82)
                      -|++||+|||||||++||||+ .+|+++|||||++|+.+++    |+.||||||++|+++||+.+++|  .|+.
T Consensus       197 ysvv~YiLGigDRH~~NILi~-~~G~~~HIDFG~ilg~~p~----~~~~PFrLT~~mv~~mGg~~s~~~~~F~~  265 (350)
T cd00896         197 YCVITYILGVGDRHLDNLLLT-KDGKLFHIDFGYILGRDPK----PFPPPMKLCKEMVEAMGGAQSEGYQEFKS  265 (350)
T ss_pred             HHHHHHHhcccccCCCcEEEc-CCCCEEEEEhHHhhCCCCC----CCCCCeeccHHHHHHhCCCCCcchHHHHH
Confidence            489999999999999999998 7999999999999999864    67799999999999999999999  6763

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin

>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.92  E-value=7.8e-28  Score=168.45  Aligned_cols=73  Identities=41%  Similarity=0.640  Sum_probs=59.2

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhh----CCCCCchheeeeEE
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVN----EPYGSQEVALSSEV   77 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~----g~~g~eG~f~~~~~   77 (82)
                      .|+++|++|+|||||+|||++..||+++|||||++|+ . +..+.+|.||||||++|+++|    ++.|.+|.|+.++.
T Consensus       129 ~si~~yilg~gDRh~~Nili~~~~g~~~hIDfg~~f~-~-~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~  205 (235)
T PF00454_consen  129 YSILDYILGLGDRHPGNILIDKKTGELIHIDFGFIFG-G-KHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCE  205 (235)
T ss_dssp             HHHHHHHHT-CS--TTTEEE-ETTSEEEE--HSSCTT-H-HHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHH
T ss_pred             HhhceEEEeecCCCchhheeccccceeeeEEeHHhhh-c-cccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHH
Confidence            5899999999999999999999999999999999999 3 456889999999999999999    99999999986543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....

>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]

Probab=99.92  E-value=4.6e-27  Score=203.09  Aligned_cols=78  Identities=32%  Similarity=0.492  Sum_probs=72.8

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheee-eEEeee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALS-SEVGFQ   80 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~-~~~~~q   80 (82)
                      .|++||+||+|||||+|||+|+.||+++|||||++++..++.++.||.||||||++++++||+.|.||.|+. |+.+++
T Consensus      1937 ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~Fr~~c~~~~~ 2015 (2105)
T COG5032        1937 YSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEGSFRELCETAFR 2015 (2105)
T ss_pred             HHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchhhHHHHHHHHHHH
Confidence            589999999999999999999889999999999999999999999999999999999999999999999984 555544

>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.92  E-value=1.6e-26  Score=174.21  Aligned_cols=71  Identities=30%  Similarity=0.341  Sum_probs=60.5

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCC-CCCCCceeecHHHHHhhC-C-CC---Cchheee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLP-IPELMPFRLTPHILAVNE-P-YG---SQEVALS   74 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~-~~E~vPFRLT~~~~~~~g-~-~g---~eG~f~~   74 (82)
                      -|++||||||||||++||||+ .+|+++|||||++|+..++.+. .||+||||||++|+++|| + .|   .+|.|+.
T Consensus       203 YsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~  279 (362)
T cd05173         203 YCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQ  279 (362)
T ss_pred             HHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccCCCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHH
Confidence            489999999999999999998 7999999999999998765554 489999999999999996 2 23   3566763

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de

>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.92  E-value=6.2e-26  Score=170.99  Aligned_cols=62  Identities=29%  Similarity=0.401  Sum_probs=56.6

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCC-CCCCCceeecHHHHHhhCC
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLP-IPELMPFRLTPHILAVNEP   65 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~-~~E~vPFRLT~~~~~~~g~   65 (82)
                      -|++||||||||||++||||+ .+|+++|||||++|+..++.+. .||+||||||++|+++||.
T Consensus       203 ysVvtYiLGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~e~v~vmg~  265 (361)
T cd05174         203 YCVATYVLGIGDRHSDNIMIR-ESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQ  265 (361)
T ss_pred             HHHHHHHhcccCcCccceeEc-CCCCEEEEehHHhhcCCcccCCCCCCCCCeeccHHHHHHHcc
Confidence            489999999999999999997 7999999999999998766554 4899999999999999974

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and

>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.91  E-value=1.3e-25  Score=168.74  Aligned_cols=70  Identities=24%  Similarity=0.259  Sum_probs=60.5

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCC-CCCCCceeecHHHHHhhCCCC----Cchhee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLP-IPELMPFRLTPHILAVNEPYG----SQEVAL   73 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~-~~E~vPFRLT~~~~~~~g~~g----~eG~f~   73 (82)
                      -|++||||||||||++||||+ .+|+++|||||++|+..++... .+|+||||||++|+++||+.|    ..+.|+
T Consensus       197 ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~  271 (353)
T cd05166         197 CCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFV  271 (353)
T ss_pred             HHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhcccccccccCCCCCCCccccHHHHHHhcCCCCCcchHhHHH
Confidence            489999999999999999998 7999999999999999875544 389999999999999998653    234565

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any

>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.91  E-value=2.1e-25  Score=168.37  Aligned_cols=62  Identities=31%  Similarity=0.383  Sum_probs=57.2

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCC-CCCCCceeecHHHHHhhCC
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLP-IPELMPFRLTPHILAVNEP   65 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~-~~E~vPFRLT~~~~~~~g~   65 (82)
                      -|++||||||||||++||||+ .+|+++|||||++|+.+++.+. .||++|||||++|+.+||+
T Consensus       206 YsV~tYiLGIgDRHndNImi~-~~G~l~HIDFG~iLg~~p~~~~~~~E~~PFkLT~emv~v~~g  268 (366)
T cd05175         206 YCVATFILGIGDRHNSNIMVK-DDGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISK  268 (366)
T ss_pred             HHHHHHHhcccccCccceeEc-CCCCEEEEehHHhhcCCCccCCCCCCCCCeEecHHHHHHhcc
Confidence            489999999999999999998 7999999999999999987664 5999999999999999974

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and

>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.91  E-value=4.4e-25  Score=166.02  Aligned_cols=64  Identities=28%  Similarity=0.303  Sum_probs=57.4

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCC-CCCCCceeecHHHHHhhCCCC
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLP-IPELMPFRLTPHILAVNEPYG   67 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~-~~E~vPFRLT~~~~~~~g~~g   67 (82)
                      -|++||+|||||||++||||+ .+|+++|||||++|+.+++... .+|++|||||++|+++||+..
T Consensus       197 Ysv~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PFkLT~emv~~mgG~~  261 (353)
T cd05176         197 CCVATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDMAYVINGGE  261 (353)
T ss_pred             HHHHhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccCCCCCCCCeeecHHHHHHhcCCC
Confidence            489999999999999999997 8999999999999999875443 389999999999999998644

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n

>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.91  E-value=3e-25  Score=166.93  Aligned_cols=67  Identities=24%  Similarity=0.319  Sum_probs=57.8

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCC-CCCCceeecHHHHHhh--CCCCCch
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAVN--EPYGSQE   70 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~-~E~vPFRLT~~~~~~~--g~~g~eG   70 (82)
                      -|++||||||||||++||||+ .+|+++|||||++|+.+++...+ +|++|||||++|+.++  |+.+.++
T Consensus       198 ysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PF~LT~emv~~~~~GG~~s~~  267 (354)
T cd05177         198 WCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGSIKRDRAPFIFTSEMEYFITEGGKKPQR  267 (354)
T ss_pred             HHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccCCCcCCCCeeccHHHHHHhcCCCCCchh
Confidence            489999999999999999998 89999999999999999765443 8999999999999876  4444444

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n

>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=99.89  E-value=3.4e-24  Score=161.25  Aligned_cols=62  Identities=27%  Similarity=0.307  Sum_probs=55.9

Q ss_pred             ceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCC-CCCCCceeecHHHHHhhCCC
Q psy16910          4 SSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLP-IPELMPFRLTPHILAVNEPY   66 (82)
Q Consensus         4 S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~-~~E~vPFRLT~~~~~~~g~~   66 (82)
                      |++||+|||||||++||||+ .+|+++|||||++|+..++... .+|++||+||++|+++||+-
T Consensus       199 sV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~~~re~~PF~Lt~emv~vm~gg  261 (354)
T cd00895         199 CVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGNIKRDRAPFVFTSDMAYVINGG  261 (354)
T ss_pred             HHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCCCCcCCCCccccHHHHHHhcCC
Confidence            78999999999999999997 8999999999999999865433 48999999999999999753

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not

>KOG0904|consensus

Probab=99.80  E-value=2.1e-20  Score=152.05  Aligned_cols=64  Identities=36%  Similarity=0.460  Sum_probs=60.0

Q ss_pred             ceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCC-CCCCceeecHHHHHhhCCCCC
Q psy16910          4 SSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAVNEPYGS   68 (82)
Q Consensus         4 S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~-~E~vPFRLT~~~~~~~g~~g~   68 (82)
                      +++||||||||||.+|||| +.||+.+|||||+++|+.+..+.+ .|+|||-||++++.+|+.-+.
T Consensus       919 cVATyVLGIgDRHsDNIMv-ke~GqlFHIDFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~  983 (1076)
T KOG0904|consen  919 CVATYVLGIGDRHSDNIMV-KETGQLFHIDFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKT  983 (1076)
T ss_pred             eeeeeeecccccccCceEE-eccCcEEEEEhhhhhccchhhcCcccccCceEeecceeeeecccCC
Confidence            6899999999999999999 599999999999999999988887 999999999999999987654

>KOG0903|consensus

Probab=99.75  E-value=4e-19  Score=142.93  Aligned_cols=64  Identities=30%  Similarity=0.405  Sum_probs=58.2

Q ss_pred             ceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCc
Q psy16910          4 SSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQ   69 (82)
Q Consensus         4 S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~e   69 (82)
                      |++||+|+|.|||++||||| ..|+|+|||||++++.+|..+. .|..||+||.+++++||+...+
T Consensus       691 SLvcYlLQvKDRHNGNILiD-~EGHIIHIDFGFmLsnsPgnvg-FEsAPFKLT~EylEvmgG~~~d  754 (847)
T KOG0903|consen  691 SLVCYLLQVKDRHNGNILID-EEGHIIHIDFGFMLSNSPGNVG-FESAPFKLTTEYLEVMGGLDSD  754 (847)
T ss_pred             HHHHHhhhcccccCCceEec-CCCCEEEEeeeeEecCCCCCcc-cccCchhhHHHHHHHhcCCcHH
Confidence            78999999999999999999 9999999999999999987555 6999999999999999954433

>KOG0906|consensus

Probab=99.74  E-value=1.8e-18  Score=138.07  Aligned_cols=63  Identities=33%  Similarity=0.569  Sum_probs=57.0

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCch
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQE   70 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG   70 (82)
                      -|++||||||||||++|+|+ ..+|+++|||||++||.+++.++    .|.+|+++|+++||+..++-
T Consensus       689 YsVitYILGvGDRhldNLll-T~dGk~FHiDFgyIlGRDPKP~p----p~MkL~kemve~mgg~es~~  751 (843)
T KOG0906|consen  689 YSVITYILGVGDRHLDNLLL-TKDGKLFHIDFGYILGRDPKPFP----PPMKLAKEMVEGMGGAESKQ  751 (843)
T ss_pred             ceeeeeeecccCCCcCceEE-ccCCcEEEEeeeeeccCCCCCCC----CccccCHHHHHHhcccchHH
Confidence            38999999999999999999 59999999999999999988554    39999999999999987643

>KOG0891|consensus

Probab=99.65  E-value=4e-18  Score=148.55  Aligned_cols=72  Identities=33%  Similarity=0.433  Sum_probs=68.8

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALS   74 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~   74 (82)
                      .|+++|++|+|||||+|.|+++.||++.|||||.||+..+...+.||.+|||||+++.++|.+.|.+|.++.
T Consensus      2133 msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~amev~gl~g~~~~ 2204 (2341)
T KOG0891|consen 2133 MSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINAMEVTGIEGTYRI 2204 (2341)
T ss_pred             HHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHhHHHHhhhhHHHH
Confidence            589999999999999999999999999999999999999887788999999999999999999999999863

>KOG0902|consensus

Probab=99.59  E-value=7.2e-16  Score=130.14  Aligned_cols=62  Identities=29%  Similarity=0.338  Sum_probs=56.0

Q ss_pred             ceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCC
Q psy16910          4 SSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYG   67 (82)
Q Consensus         4 S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g   67 (82)
                      |+++|.|++.|||++|||+| ..|+++|||||++|+.+|+..-..|. ||+||.+|+.+||+.-
T Consensus      1648 sv~s~lLq~KDRHNGNim~D-d~G~~iHIDFGf~~e~sPGgnl~fE~-~fKLt~Em~~~mgG~~ 1709 (1803)
T KOG0902|consen 1648 SVLSYLLQIKDRHNGNIMID-DQGHIIHIDFGFMFESSPGGNLGFEP-PFKLTKEMVMLMGGKM 1709 (1803)
T ss_pred             HHHHHHcccccccCCceeEc-cCCCEEEEeeeeEEecCCCCccCcCC-CccchHHHHHHhCCCC
Confidence            78899999999999999999 99999999999999999875334577 9999999999999654

>KOG0905|consensus

Probab=99.59  E-value=7.7e-16  Score=128.52  Aligned_cols=63  Identities=29%  Similarity=0.353  Sum_probs=55.2

Q ss_pred             ceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCC-CCCCceeecHHHHHhhCCCC
Q psy16910          4 SSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAVNEPYG   67 (82)
Q Consensus         4 S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~-~E~vPFRLT~~~~~~~g~~g   67 (82)
                      +++||||||+|||++|||+ ++||+++|||||-.+|...-.-.+ .+++||-+|.+|..+|.+-+
T Consensus      1192 cVaTYVLGIcDRHNDNIMl-~~sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINgG~ 1255 (1639)
T KOG0905|consen 1192 CVATYVLGICDRHNDNIML-TKSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGD 1255 (1639)
T ss_pred             eeeeEeeecccccCCceEE-eccCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcCCC
Confidence            6899999999999999999 699999999999999987532222 78999999999999987654

>PTZ00303 phosphatidylinositol kinase; Provisional

Probab=99.47  E-value=1.7e-14  Score=117.64  Aligned_cols=63  Identities=30%  Similarity=0.372  Sum_probs=52.1

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCC
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYG   67 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g   67 (82)
                      -|+++|+|||||||++||||+ .+|+++|||||++|+..+ .-...-.-|-|+...|...++.+-
T Consensus      1140 YsViTYILgIgDRHngNILId-~dGhLfHIDFGFILg~rt-fkeKl~~s~vR~D~~l~eav~~~q 1202 (1374)
T PTZ00303       1140 FLLLNYIFSIGDRHKGNVLIG-TNGALLHIDFRFIFSEKT-FVEKLARSTVRIDDAFLAAVEQCQ 1202 (1374)
T ss_pred             HHHHHHHhccCcccCCceeEc-CCCCEEEEecceeecCch-hhhccCCCceehhHHHHHHHHHHH
Confidence            378999999999999999997 999999999999999875 112234459999999999876543

>KOG0889|consensus

Probab=98.90  E-value=1.1e-10  Score=104.48  Aligned_cols=74  Identities=23%  Similarity=0.295  Sum_probs=69.1

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchheeeeE
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEVALSSE   76 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~f~~~~   76 (82)
                      +|+.+|++.++.|.|+.+++.+.||+++..||-+....+++.++..|.||||||||++.++|..|+||++..++
T Consensus      3378 ~~~~~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~s~ 3451 (3550)
T KOG0889|consen 3378 FSFMEYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAGSM 3451 (3550)
T ss_pred             HHHHHHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHHHH
Confidence            57889999999999999999999999999999999988888899999999999999999999999999986543

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=92.57  E-value=0.11  Score=34.96  Aligned_cols=25  Identities=28%  Similarity=0.224  Sum_probs=21.5

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeec
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFG   39 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~   39 (82)
                      +|=+|+||+++  +|++.=||||.+-.
T Consensus       142 rDlkP~NIll~--~~~~~liDFG~a~~  166 (190)
T cd05145         142 GDLSEYNILYH--DGKPYIIDVSQAVE  166 (190)
T ss_pred             CCCChhhEEEE--CCCEEEEEccccee
Confidence            68899999997  79999999996543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=92.36  E-value=0.13  Score=35.19  Aligned_cols=26  Identities=27%  Similarity=0.138  Sum_probs=21.8

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeecc
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFGV   40 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~~   40 (82)
                      +|=+|+|||++  +|++.=||||.+-..
T Consensus       142 rDlkP~NIli~--~~~v~LiDFG~a~~~  167 (190)
T cd05147         142 ADLSEYNLLYH--DGKLYIIDVSQSVEH  167 (190)
T ss_pred             CCCCHHHEEEE--CCcEEEEEccccccC
Confidence            68899999997  589999999976433

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05151 ChoK Choline Kinase (ChoK)

Probab=91.39  E-value=0.23  Score=31.85  Aligned_cols=27  Identities=30%  Similarity=0.186  Sum_probs=22.5

Q ss_pred             eeeCCCCCCcEEEEcCCCcEEEEeeceee
Q psy16910         10 YSIGDRHLENTLVCTKTGRCVGIDFGYSF   38 (82)
Q Consensus        10 lgigDRh~~nili~~~tG~v~hiDfg~~~   38 (82)
                      +.=||=||+||+++  .+++.-|||+.+-
T Consensus       109 ~~HgD~~~~Nil~~--~~~~~liDf~~a~  135 (170)
T cd05151         109 PCHNDLLPGNFLLD--DGRLWLIDWEYAG  135 (170)
T ss_pred             eecCCCCcCcEEEE--CCeEEEEeccccc
Confidence            44589999999997  6789999998643

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=91.13  E-value=0.26  Score=33.10  Aligned_cols=29  Identities=24%  Similarity=0.149  Sum_probs=24.6

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeecccc
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFGVAT   42 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~~~~   42 (82)
                      +|=+|+||+++ .+|++.=+|||.+.....
T Consensus       149 ~Dl~p~Nill~-~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         149 GDLSEFNILVD-DDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             CCCCcccEEEc-CCCcEEEEECCccccCCC
Confidence            57799999998 689999999998766654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=91.02  E-value=0.2  Score=40.00  Aligned_cols=23  Identities=48%  Similarity=0.657  Sum_probs=21.2

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeece
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGY   36 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~   36 (82)
                      +|=||+||+++ ..|+++-+|||.
T Consensus       289 aDpHpGNi~v~-~~g~i~~lDfGi  311 (517)
T COG0661         289 ADPHPGNILVR-SDGRIVLLDFGI  311 (517)
T ss_pred             cCCCccceEEe-cCCcEEEEcCcc
Confidence            68999999997 779999999995

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=90.71  E-value=0.26  Score=32.70  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeecee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      ||=+|+||+++  .|++.-|||+.+
T Consensus       114 ~Dl~~~Nil~~--~~~~~liDfg~a  136 (199)
T TIGR03724       114 GDLTTSNIIVR--DDKLYLIDFGLG  136 (199)
T ss_pred             CCCCcceEEEE--CCcEEEEECCCC
Confidence            78999999997  799999999853

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=89.67  E-value=0.28  Score=39.30  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=21.1

Q ss_pred             CCCCCCcEEEEcCCC----cEEEEeecee
Q psy16910         13 GDRHLENTLVCTKTG----RCVGIDFGYS   37 (82)
Q Consensus        13 gDRh~~nili~~~tG----~v~hiDfg~~   37 (82)
                      +|=||+||+++ .+|    ++.-+|||.+
T Consensus       284 aDpHPGNIlv~-~~g~~~~~i~llDFGiv  311 (537)
T PRK04750        284 ADMHPGNIFVS-YDPPENPRYIALDFGIV  311 (537)
T ss_pred             CCCChHHeEEe-cCCCCCCeEEEEecceE
Confidence            78999999997 556    9999999965

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=89.45  E-value=0.32  Score=37.54  Aligned_cols=24  Identities=38%  Similarity=0.659  Sum_probs=21.7

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeecee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      +|=||+||+++ .+|++.-+|||.+
T Consensus       281 ~D~hPgNilv~-~~g~i~liDfG~~  304 (437)
T TIGR01982       281 ADLHPGNIFVL-KDGKIIALDFGIV  304 (437)
T ss_pred             CCCCcccEEEC-CCCcEEEEeCCCe
Confidence            69999999995 8899999999965

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05119 RIO RIO kinase family, catalytic domain

Probab=89.42  E-value=0.37  Score=31.60  Aligned_cols=27  Identities=30%  Similarity=0.288  Sum_probs=22.2

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeeccc
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFGVA   41 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~~~   41 (82)
                      +|=+|+||+++  +|.+.-+|||.+-...
T Consensus       139 ~Dl~p~Nili~--~~~~~liDfg~a~~~~  165 (187)
T cd05119         139 GDLSEYNILVD--DGKVYIIDVPQAVEID  165 (187)
T ss_pred             CCCChhhEEEE--CCcEEEEECccccccc
Confidence            57799999998  8999999999764433

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>TIGR03843 conserved hypothetical protein

Probab=89.21  E-value=0.57  Score=34.56  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             eeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccC
Q psy16910          6 LLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQ   43 (82)
Q Consensus         6 ~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~   43 (82)
                      +=+++.=.|||.+|||.. .+|+++-||=|.+|....+
T Consensus       141 fDi~inNaDRk~GhiL~~-~dg~l~~IDHGl~f~~~~k  177 (253)
T TIGR03843       141 FDALVNNADRKGGHVLPG-PDGRVWGVDHGVCFHVEPK  177 (253)
T ss_pred             heeeeecCCCCCCcEeEc-CCCcEEEecCceecCCCCc
Confidence            345666689999999996 6999999999999998754

This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=89.02  E-value=0.45  Score=31.76  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.6

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeecee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      ||=+|+|||++  .+.+.-|||+.+
T Consensus       119 ~Dl~p~Nil~~--~~~~~liDf~~a  141 (211)
T PRK14879        119 GDLTTSNMILS--GGKIYLIDFGLA  141 (211)
T ss_pred             CCCCcccEEEE--CCCEEEEECCcc
Confidence            78999999997  799999999854

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=88.92  E-value=0.43  Score=31.51  Aligned_cols=31  Identities=35%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             eeeeeeCCCCCCcEEEEcCCCcEEEEeecee
Q psy16910          7 LLEYSIGDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus         7 ~yilgigDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      .+.+.=||=||+|||++...|++.-|||..+
T Consensus       165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a  195 (239)
T PF01636_consen  165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDA  195 (239)
T ss_dssp             CEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred             CcEEEEeccccccceeeeccceeEEEecccc
Confidence            4567779999999999877888888999764

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=88.48  E-value=0.62  Score=33.24  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=27.5

Q ss_pred             eeeeeeeCCCCCCcEEEEcC---CCcEEEEeecee
Q psy16910          6 LLLEYSIGDRHLENTLVCTK---TGRCVGIDFGYS   37 (82)
Q Consensus         6 ~~yilgigDRh~~nili~~~---tG~v~hiDfg~~   37 (82)
                      ..+++.=||=|++|||++..   ++++.-|||.++
T Consensus       177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya  211 (302)
T cd05156         177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYA  211 (302)
T ss_pred             CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCC
Confidence            45788999999999999843   589999999876

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=87.77  E-value=0.45  Score=34.31  Aligned_cols=22  Identities=41%  Similarity=0.468  Sum_probs=19.4

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeece
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGY   36 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~   36 (82)
                      ||=||+||+++ ..| +.-||||.
T Consensus       159 ~Dikp~Nili~-~~g-i~liDfg~  180 (232)
T PRK10359        159 GDPHKGNFIVS-KNG-LRIIDLSG  180 (232)
T ss_pred             CCCChHHEEEe-CCC-EEEEECCC
Confidence            79999999997 677 99999984

>KOG0616|consensus

Probab=87.21  E-value=0.43  Score=36.55  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeecee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      .|--|+|||+| ++|.+=-+|||++
T Consensus       168 RDLKPENiLlD-~~G~iKitDFGFA  191 (355)
T KOG0616|consen  168 RDLKPENLLLD-QNGHIKITDFGFA  191 (355)
T ss_pred             ccCChHHeeec-cCCcEEEEeccce
Confidence            47789999998 9999999999986

>smart00090 RIO RIO-like kinase

Probab=86.41  E-value=0.66  Score=32.83  Aligned_cols=26  Identities=38%  Similarity=0.408  Sum_probs=21.9

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeecc
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFGV   40 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~~   40 (82)
                      +|=+|+||+++  ++++.=||||.+...
T Consensus       173 ~Dikp~NIli~--~~~i~LiDFg~a~~~  198 (237)
T smart00090      173 GDLSEYNILVH--DGKVVIIDVSQSVEL  198 (237)
T ss_pred             CCCChhhEEEE--CCCEEEEEChhhhcc
Confidence            68899999997  899999999965433

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=86.07  E-value=0.73  Score=32.57  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeecee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      +|=+|+|||++ .+|++.-|||+.+
T Consensus       166 rDlkp~NILv~-~~~~v~LIDfg~~  189 (239)
T PRK01723        166 ADLNAHNILLD-PDGKFWLIDFDRG  189 (239)
T ss_pred             CCCCchhEEEc-CCCCEEEEECCCc
Confidence            58899999997 5789999999843

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=84.71  E-value=0.63  Score=31.67  Aligned_cols=30  Identities=33%  Similarity=0.479  Sum_probs=21.7

Q ss_pred             eeeeeCCCCCCcEEEEcCCCcEEEEeecee
Q psy16910          8 LEYSIGDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus         8 yilgigDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      .+++=+|=+++|||++..++++.-|||-++
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya  172 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYA  172 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHH
Confidence            578889999999999779999999999876

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=84.46  E-value=1.2  Score=26.81  Aligned_cols=24  Identities=38%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeecee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      ||=+|+||+++ .++.+.-+||+.+
T Consensus       113 ~Dl~~~Nil~~-~~~~~~l~Df~~~  136 (155)
T cd05120         113 GDLHPGNILVD-DGKILGIIDWEYA  136 (155)
T ss_pred             cCCCcceEEEE-CCcEEEEEecccc
Confidence            78899999998 5899999999854

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=84.41  E-value=1.4  Score=32.46  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=29.5

Q ss_pred             eeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccc
Q psy16910          7 LLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVA   41 (82)
Q Consensus         7 ~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~   41 (82)
                      ..++.=+|=+++|||++...+++.-|||.++--..
T Consensus       181 ~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~nd  215 (330)
T PLN02421        181 PVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSYSY  215 (330)
T ss_pred             CeEEEECCCCcccEEEeCCCCcEEEEcccccCCCc
Confidence            35788899999999998677899999999885444

>KOG0608|consensus

Probab=83.36  E-value=0.9  Score=38.37  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.7

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeecee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      .|--|+||||| ..|+|--+|||.|
T Consensus       753 RDiKPDNILID-rdGHIKLTDFGLC  776 (1034)
T KOG0608|consen  753 RDIKPDNILID-RDGHIKLTDFGLC  776 (1034)
T ss_pred             cccCccceEEc-cCCceeeeecccc
Confidence            36679999999 8999999999988

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=83.18  E-value=2.2  Score=29.12  Aligned_cols=32  Identities=16%  Similarity=0.148  Sum_probs=26.4

Q ss_pred             eeeeeeCCCCCCcEEEEcCCCcEEEEeeceee
Q psy16910          7 LLEYSIGDRHLENTLVCTKTGRCVGIDFGYSF   38 (82)
Q Consensus         7 ~yilgigDRh~~nili~~~tG~v~hiDfg~~~   38 (82)
                      ..++.=||=|++|||++..++.+.=|||-++-
T Consensus       169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            45788899999999998436889999998653

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>KOG0984|consensus

Probab=82.52  E-value=1.1  Score=33.24  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.6

Q ss_pred             CCCCCcEEEEcCCCcEEEEeecee
Q psy16910         14 DRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus        14 DRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      |-.|+||||+ ..|+|-.+|||-+
T Consensus       174 DvKPsNiLIn-~~GqVKiCDFGIs  196 (282)
T KOG0984|consen  174 DVKPSNILIN-YDGQVKICDFGIS  196 (282)
T ss_pred             cCCcceEEEc-cCCcEEEcccccc
Confidence            5679999998 9999999999965

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=81.96  E-value=1.5  Score=28.90  Aligned_cols=31  Identities=19%  Similarity=0.188  Sum_probs=23.5

Q ss_pred             eeeeeeCCCCCCcEEEEcC-CCcEEEEeecee
Q psy16910          7 LLEYSIGDRHLENTLVCTK-TGRCVGIDFGYS   37 (82)
Q Consensus         7 ~yilgigDRh~~nili~~~-tG~v~hiDfg~~   37 (82)
                      -+.+-=||=|++||+++.+ ++.+.=|||..+
T Consensus       173 ~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~  204 (223)
T cd05154         173 RPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA  204 (223)
T ss_pred             CcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence            3456669999999999754 455778999754

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=81.85  E-value=1.3  Score=31.31  Aligned_cols=29  Identities=21%  Similarity=0.086  Sum_probs=22.5

Q ss_pred             eeeeeCCCCCCcEEEEcCCCcEEEEeecee
Q psy16910          8 LEYSIGDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus         8 yilgigDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      +.+.=||=||+|++++ .++.+.-|||..+
T Consensus       175 ~~l~HgD~~~~Nil~~-~~~~~~iIDfe~a  203 (296)
T cd05153         175 RGVIHADLFRDNVLFD-GDELSGVIDFYFA  203 (296)
T ss_pred             CcCCccCcCcccEEEe-CCceEEEeehhhh
Confidence            4455699999999997 5555679999764

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG0598|consensus

Probab=81.18  E-value=0.85  Score=35.16  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=21.6

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeecee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYS   37 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~   37 (82)
                      .|=-|+|||+| ..|++.-+|||.+
T Consensus       149 RDlKPENILLd-~~GHi~LtDFgL~  172 (357)
T KOG0598|consen  149 RDLKPENILLD-EQGHIKLTDFGLC  172 (357)
T ss_pred             ccCCHHHeeec-CCCcEEEeccccc
Confidence            46789999998 9999999999976

>PRK12274 serine/threonine protein kinase; Provisional

Probab=81.08  E-value=1.6  Score=31.41  Aligned_cols=25  Identities=32%  Similarity=0.311  Sum_probs=20.7

Q ss_pred             CCC-CCCcEEEEcCCCcEEEEeeceee
Q psy16910         13 GDR-HLENTLVCTKTGRCVGIDFGYSF   38 (82)
Q Consensus        13 gDR-h~~nili~~~tG~v~hiDfg~~~   38 (82)
                      +|= .|+|||++ .+|++.-||||.+-
T Consensus       115 rDL~kp~NILv~-~~g~i~LIDFG~A~  140 (218)
T PRK12274        115 NDLAKEANWLVQ-EDGSPAVIDFQLAV  140 (218)
T ss_pred             CCCCCcceEEEc-CCCCEEEEECCCce
Confidence            555 57999997 78999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
1e8y_A	966	Structure Determinants Of Phosphoinositide 3-Kinase		2e-04
1he8_A	965	Ras G12v-Pi 3-Kinase Gamma Complex Length = 965		2e-04
4dk5_A	959	Crystal Structure Of Human Pi3k-Gamma In Complex Wi		2e-04
4anv_A	980	Complexes Of Pi3kgamma With Isoform Selective Inhib		2e-04
4anu_A	980	Complexes Of Pi3kgamma With Isoform Selective Inhib		2e-04
3apc_A	966	Crystal Structure Of Human Pi3k-Gamma In Complex Wi		2e-04
3qaq_A	960	Crystal Structure Of Pi3k-Gamma In Complex With Tri		2e-04
3nzs_A	954	Structure-Based Optimization Of Pyrazolo -Pyrimidin		2e-04
3l54_A	966	Structure Of Pi3k Gamma With Inhibitor Length = 966		2e-04
3ene_A	959	Complex Of Pi3k Gamma With An Inhibitor Length = 95		2e-04
3dbs_A	960	Structure Of Pi3k Gamma In Complex With Gdc0941 Len		2e-04
3cst_A	966	Crystal Structure Of Pi3k P110gamma Catalytical Dom		2e-04
4anx_A	980	Complexes Of Pi3kgamma With Isoform Selective Inhib		6e-04

>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin And Staurosporine Length = 966

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 802 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 852

>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex Length = 965

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 801 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 851

>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A Pyridyl- Triazine Inhibitor Length = 959

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 801 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 851

>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors Length = 980

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 806 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 856

>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors. Length = 980

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 806 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 856

>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With Ch5132799 Length = 966

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 808 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 858

>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Triazine-Benzimidazole 1 Length = 960

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 802 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 852

>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And -Pyridine Inhibitors Of Pi3-Kinase Length = 954

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 798 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 848

>pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor Length = 966

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 802 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 852

>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor Length = 959

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 801 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 851

>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941 Length = 960

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 802 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 852

>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In Complex With Organoruthenium Inhibitor E5e2 Length = 966

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 802 IGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 852

>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors Length = 980

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
           IGDRH +N ++ T+TG    IDFG+  G     L I  E +PF LTP  L V
Sbjct: 806 IGDRHNDNIMI-TETGNLFHIDFGHINGNYKSFLGINKERVPFVLTPDFLFV 856

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
3ls8_A	614	Phosphatidylinositol 3-kinase catalytic subunit ty	6e-08
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	1e-07
2x6h_A	696	GH13170P, VPS34, phosphotidylinositol 3 kinase 59F	2e-07
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	2e-07
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	3e-07
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	8e-07

>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A Length = 614

 Score = 46.8 bits (110), Expect = 6e-08
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAV 62
           +GDRHL+N L+ TKTG+   IDFGY  G      P P   P +L   ++  
Sbjct: 476 VGDRHLDNLLL-TKTGKLFHIDFGYILGRD----PKPLPPPMKLNKEMVEG 521

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* Length = 940

 Score = 46.0 bits (108), Expect = 1e-07
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFRLTPHILAVNEPYGSQE 70
           IGDRH +N ++  ++G+   IDFG+  G       I  E +PF LT   + V +   +  
Sbjct: 787 IGDRHSDNIMI-RESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNN 845

>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A* Length = 696

 Score = 45.6 bits (107), Expect = 2e-07
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAV 62
           +GDRHL+N L+ T  G+   IDFGY  G      P P   P +L+  ++  
Sbjct: 550 VGDRHLDNLLL-TTNGKLFHIDFGYILGRD----PKPMPPPMKLSKEMVEA 595

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 1092

 Score = 45.3 bits (106), Expect = 3e-07
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFRLTPHILAVNEPYGSQE 70
           IGDRH +N +V  KTG+   IDFG+  G       I  E +PF LT   + V +   +  
Sbjct: 939 IGDRHSDNIMV-KKTGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGN 997

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A Length = 1091

 Score = 43.7 bits (102), Expect = 8e-07
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVA-TQLLPIPELMPFRLTPHILAV 62
           IGDRH  N +V    G+   IDFG+       +     E +PF LT   L V
Sbjct: 936 IGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIV 986

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
3ls8_A	614	Phosphatidylinositol 3-kinase catalytic subunit ty	99.93
2x6h_A	696	GH13170P, VPS34, phosphotidylinositol 3 kinase 59F	99.93
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	99.93
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	99.91
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	99.91
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	99.9
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	86.61
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	85.06
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	84.85
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	84.32
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	83.23
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	82.83
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	82.44
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	81.19
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	80.5
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	80.1

>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A

Probab=99.93  E-value=1.7e-28  Score=193.22  Aligned_cols=72  Identities=29%  Similarity=0.443  Sum_probs=64.8

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCch--hee-eeEEee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQE--VAL-SSEVGF   79 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG--~f~-~~~~~~   79 (82)
                      .|++|||||||||||+||||+ .||+++|||||++|+.++    .||+||||||++|+++||+.|+||  .|+ .|+.++
T Consensus       467 ySvv~YILGigDRH~~NILld-~tG~v~HIDFG~~f~~~p----~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~  541 (614)
T 3ls8_A          467 YCVITYILGVGDRHLDNLLLT-KTGKLFHIDFGYILGRDP----KPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAF  541 (614)
T ss_dssp             HHHHHHHHTCCCCCTTSEEEC-TTSCEEECCCSSCTTCCS----SSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHHHH
T ss_pred             HhHhheeeeccCCCCcceeEc-CCCCEeeeehHHhhccCC----CCCCCCeecCHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence            489999999999999999998 899999999999999874    489999999999999999999998  787 455444

>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*

Probab=99.93  E-value=7.6e-28  Score=191.57  Aligned_cols=72  Identities=25%  Similarity=0.439  Sum_probs=64.5

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHhhCCCCCchh--eee-eEEee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQEV--ALS-SEVGF   79 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~~g~~g~eG~--f~~-~~~~~   79 (82)
                      .|++|||||||||||+||||+ .||+++|||||++|+.++    .||.||||||+||+++||+.|+||+  |+. |+.++
T Consensus       541 ~Svv~YILGlGDRH~~NILid-~tG~v~HIDFG~~f~~~p----~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~~~~  615 (696)
T 2x6h_A          541 YCVITYLLGVGDRHLDNLLLT-TNGKLFHIDFGYILGRDP----KPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCYTAY  615 (696)
T ss_dssp             HHHHHHHHTCCCCCTTTEEEC-TTSCEEECCCCSCTTCCS----SSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCCCCcceEEe-CCCCEEEEeehhhhccCC----CCcCCCeecCHHHHHHhCCCCcccHHHHHHHHHHHH
Confidence            589999999999999999999 699999999999999884    4899999999999999999999996  864 44443

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=99.91  E-value=9e-27  Score=189.84  Aligned_cols=75  Identities=28%  Similarity=0.350  Sum_probs=58.6

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCC-CCCCceeecHHHHHhhCCC--CCc---hheee-e
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAVNEPY--GSQ---EVALS-S   75 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~-~E~vPFRLT~~~~~~~g~~--g~e---G~f~~-~   75 (82)
                      .|++|||||||||||+||||+ .||+++|||||++|+.+++.+.+ ||.||||||+||+++||+-  +.+   |.|+. |
T Consensus       778 ~Svv~YILGlgDRH~~NILid-~tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~~g~Fr~~c  856 (940)
T 2wxf_A          778 YCVATYVLGIGDRHSDNIMIR-ESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYC  856 (940)
T ss_dssp             HHHHHHHHTCCCCCGGGEEEE-TTSCEEECCCCCCTTCC---------CCCCCCCHHHHHHHTTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCcccEEEe-cCCCEEEEeehhhhcccccccCCCCCCCCccCCHHHHHHHcCCCCCCCcchhhHHHHH
Confidence            589999999999999999999 59999999999999998766665 9999999999999999863  344   77874 4


Q ss_pred             EEe
Q psy16910         76 EVG   78 (82)
Q Consensus        76 ~~~   78 (82)
                      +.+
T Consensus       857 ~~~  859 (940)
T 2wxf_A          857 ERA  859 (940)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=99.91  E-value=2e-26  Score=189.87  Aligned_cols=75  Identities=32%  Similarity=0.370  Sum_probs=64.2

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCC-CCCCceeecHHHHHhhCCC--CCc---hheee-e
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAVNEPY--GSQ---EVALS-S   75 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~-~E~vPFRLT~~~~~~~g~~--g~e---G~f~~-~   75 (82)
                      .|++|||||||||||+||||+ .||+++|||||++|+.+++.+.+ ||.||||||+||+++||+-  +.+   |.|+. |
T Consensus       930 ySvv~YILGlGDRH~~NILid-~tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~fg~Fr~~c 1008 (1092)
T 2y3a_A          930 YCVASYVLGIGDRHSDNIMVK-KTGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQCC 1008 (1092)
T ss_dssp             HHHHHHHTTCCCCCTTTEEEC-TTSCEEECCCSCCSSCCCCGGGCCCCCCCCCCCHHHHHHHHTTCSSCSSSTTHHHHHH
T ss_pred             HHHHHHHhcCCCCCCccEEEe-cCCCEEEEeehhhhhcCCccCCCCCCCCCccCCHHHHHHHccCCCCCCcchhhHHHHH
Confidence            589999999999999999999 59999999999999988666655 9999999999999999753  444   78874 4


Q ss_pred             EEe
Q psy16910         76 EVG   78 (82)
Q Consensus        76 ~~~   78 (82)
                      +.+
T Consensus      1009 ~~a 1011 (1092)
T 2y3a_A         1009 EDA 1011 (1092)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=99.90  E-value=5.9e-26  Score=186.96  Aligned_cols=76  Identities=26%  Similarity=0.289  Sum_probs=56.1

Q ss_pred             cceeeeeeeeCCCCCCcEEEEcCCCcEEEEeeceeeccccCCCC-CCCCCceeecHHHHHhhCCC--CCc-----hheee
Q psy16910          3 NSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLP-IPELMPFRLTPHILAVNEPY--GSQ-----EVALS   74 (82)
Q Consensus         3 ~S~~~yilgigDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~-~~E~vPFRLT~~~~~~~g~~--g~e-----G~f~~   74 (82)
                      .|++|||||||||||+||||+ .||+++|||||++|+.+++.+. .||.||||||++|+++||+-  |.|     |.|+.
T Consensus       927 ysvv~YiLgigDRH~~NILid-~tG~v~HIDFG~~f~~~~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e~s~~fg~Fr~ 1005 (1091)
T 3hhm_A          927 YCVATFILGIGDRHNSNIMVK-DDGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQE 1005 (1091)
T ss_dssp             HHHHHHHHTCCCCCTTTEEEE-TTSCEEECCCCCCSCC------------CCCCCHHHHHHSSCSSSCCSSSHHHHHHHH
T ss_pred             hhheEEEEeecCCCCcceEEe-CCCCEEEEeehhhhccCCccCCCCcCCCCceeHHHHHHHHhcCCCCcccchhHHHHHH
Confidence            489999999999999999999 5999999999999999865554 59999999999999999653  444     78874


Q ss_pred             -eEEee
Q psy16910         75 -SEVGF   79 (82)
Q Consensus        75 -~~~~~   79 (82)
                       |+.++
T Consensus      1006 ~c~~a~ 1011 (1091)
T 3hhm_A         1006 MCYKAY 1011 (1091)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence             44444

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=86.61  E-value=0.35  Score=33.39  Aligned_cols=42  Identities=29%  Similarity=0.173  Sum_probs=29.4

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeeccccCCCCCCCCCceeecHHHHHh
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAV   62 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~~~~~~~~~~E~vPFRLT~~~~~~   62 (82)
                      +|=.|+|||++  +|++.=+|||.+-....      +..|.-+.+++.++
T Consensus       217 rDlkp~NILl~--~~~vkl~DFG~a~~~~~------~~a~e~l~rdv~~i  258 (282)
T 1zar_A          217 GDLSQYNVLVS--EEGIWIIDFPQSVEVGE------EGWREILERDVRNI  258 (282)
T ss_dssp             SCCSTTSEEEE--TTEEEECCCTTCEETTS------TTHHHHHHHHHHHH
T ss_pred             CCCCHHHEEEE--CCcEEEEECCCCeECCC------CCHHHHHHHHHHHH
Confidence            67789999998  99999999997654332      22355555555444

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=85.06  E-value=0.32  Score=34.35  Aligned_cols=25  Identities=32%  Similarity=0.317  Sum_probs=22.3

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSF   38 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~   38 (82)
                      +|=+|+||+++ .+|++.-+|||.+-
T Consensus       224 ~Dlkp~NIl~~-~~~~ikl~DfG~~~  248 (365)
T 2y7j_A          224 RDLKPENILLD-DNMQIRLSDFGFSC  248 (365)
T ss_dssp             SCCSGGGEEEC-TTCCEEECCCTTCE
T ss_pred             CCCCHHHEEEC-CCCCEEEEecCccc
Confidence            78899999997 88999999999653

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=84.85  E-value=0.61  Score=31.03  Aligned_cols=26  Identities=35%  Similarity=0.411  Sum_probs=22.7

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeec
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFG   39 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~   39 (82)
                      +|=+|+||+++ .+|++.-+|||.+..
T Consensus       133 ~dlkp~Nili~-~~~~~~l~Dfg~~~~  158 (279)
T 3fdn_A          133 RDIKPENLLLG-SAGELKIADFGWSVH  158 (279)
T ss_dssp             CCCCGGGEEEC-TTSCEEECSCCEESC
T ss_pred             ccCChHhEEEc-CCCCEEEEecccccc
Confidence            78899999997 899999999997643

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=84.32  E-value=0.51  Score=31.88  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=20.9

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeecc
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFGV   40 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~~   40 (82)
                      +|=+|+|||++.   ++.-||||.+-..
T Consensus       195 rDlkp~NILl~~---~~~liDFG~a~~~  219 (258)
T 1zth_A          195 ADLSEYNIMYID---KVYFIDMGQAVTL  219 (258)
T ss_dssp             SSCSTTSEEESS---SEEECCCTTCEET
T ss_pred             CCCCHHHEEEcC---cEEEEECcccccC
Confidence            688999999974   8999999976544

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=83.23  E-value=1.3  Score=29.85  Aligned_cols=28  Identities=32%  Similarity=0.246  Sum_probs=23.9

Q ss_pred             eCCCCCCcEEEEcCCCcEEEEeeceeec
Q psy16910         12 IGDRHLENTLVCTKTGRCVGIDFGYSFG   39 (82)
Q Consensus        12 igDRh~~nili~~~tG~v~hiDfg~~~~   39 (82)
                      -+|=.|+||+++..+|.+.-+|||.+-.
T Consensus       162 H~dlkp~Nil~~~~~~~~kl~dfg~~~~  189 (312)
T 2iwi_A          162 HRDIKDENILIDLRRGCAKLIDFGSGAL  189 (312)
T ss_dssp             CCCCSGGGEEEETTTTEEEECCCSSCEE
T ss_pred             ecCCChhhEEEeCCCCeEEEEEcchhhh
Confidence            3788999999987899999999997643

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=82.83  E-value=1.4  Score=30.13  Aligned_cols=28  Identities=32%  Similarity=0.230  Sum_probs=23.8

Q ss_pred             eCCCCCCcEEEEcCCCcEEEEeeceeec
Q psy16910         12 IGDRHLENTLVCTKTGRCVGIDFGYSFG   39 (82)
Q Consensus        12 igDRh~~nili~~~tG~v~hiDfg~~~~   39 (82)
                      -+|=.|+||+++..+|.+.=+|||.+-.
T Consensus       172 H~Dlkp~NIll~~~~~~~kL~Dfg~~~~  199 (320)
T 3a99_A          172 HRDIKDENILIDLNRGELKLIDFGSGAL  199 (320)
T ss_dssp             CCCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             eCCCCHHHEEEeCCCCCEEEeeCccccc
Confidence            3688999999987899999999997643

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=82.44  E-value=0.5  Score=31.86  Aligned_cols=26  Identities=19%  Similarity=0.100  Sum_probs=22.7

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeec
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFG   39 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~   39 (82)
                      +|=+|+||+++ .+|.+.=+|||.+-.
T Consensus       188 ~Dlkp~NIll~-~~~~~kL~DfG~a~~  213 (332)
T 3qd2_B          188 RDLKPSNIFFT-MDDVVKVGDFGLVTA  213 (332)
T ss_dssp             CCCCGGGEEEC-TTCCEEECCCTTCEE
T ss_pred             cCCCcccEEEe-CCCCEEEeecCcccc
Confidence            68899999997 889999999997643

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=81.19  E-value=0.69  Score=31.85  Aligned_cols=26  Identities=31%  Similarity=0.268  Sum_probs=22.7

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSF   38 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~   38 (82)
                      +|=.|+|||++..+|.+.=+|||.+-
T Consensus       155 ~Dlkp~NIll~~~~~~~kl~Dfg~a~  180 (360)
T 3e3p_A          155 RDIKPHNVLVNEADGTLKLCDFGSAK  180 (360)
T ss_dssp             SCCCGGGEEEETTTTEEEECCCTTCB
T ss_pred             CcCCHHHEEEeCCCCcEEEeeCCCce
Confidence            57789999998669999999999764

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=80.50  E-value=0.75  Score=30.60  Aligned_cols=27  Identities=33%  Similarity=0.241  Sum_probs=23.2

Q ss_pred             eCCCCCCcEEEEcCCCcEEEEeeceee
Q psy16910         12 IGDRHLENTLVCTKTGRCVGIDFGYSF   38 (82)
Q Consensus        12 igDRh~~nili~~~tG~v~hiDfg~~~   38 (82)
                      -+|=.|+||+++..+|++.-+|||.+-
T Consensus       145 H~dl~p~Nil~~~~~~~~kl~Dfg~~~  171 (295)
T 2clq_A          145 HRDIKGDNVLINTYSGVLKISDFGTSK  171 (295)
T ss_dssp             CCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred             ccCCChhhEEEECCCCCEEEeeccccc
Confidence            368899999999669999999999764

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=80.10  E-value=0.67  Score=31.02  Aligned_cols=26  Identities=27%  Similarity=0.188  Sum_probs=22.5

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeec
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFG   39 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~   39 (82)
                      +|=.|+||+++ .+|++.-+|||.+-.
T Consensus       150 ~dikp~Nil~~-~~~~~kl~Dfg~~~~  175 (302)
T 4e5w_A          150 RDLAARNVLVE-SEHQVKIGDFGLTKA  175 (302)
T ss_dssp             SCCSGGGEEEE-ETTEEEECCCTTCEE
T ss_pred             CCCchheEEEc-CCCCEEECccccccc
Confidence            68899999997 789999999997643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d1e7ua4	369	d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (P	1e-10

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1e7ua4	369	Phoshoinositide 3-kinase (PI3K), catalytic domain	99.94
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	90.63
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	88.21
d1zaka2	31	Microbial and mitochondrial ADK, insert "zinc fing	85.88
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	83.87
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	81.2

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.63  E-value=0.07  Score=33.00  Aligned_cols=25  Identities=36%  Similarity=0.282  Sum_probs=19.5

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeec
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFG   39 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~   39 (82)
                      +|=+|+|||++ . +.++=||||-+-.
T Consensus       127 rDiKP~NILv~-~-~~~~liDFG~a~~  151 (191)
T d1zara2         127 GDLSQYNVLVS-E-EGIWIIDFPQSVE  151 (191)
T ss_dssp             SCCSTTSEEEE-T-TEEEECCCTTCEE
T ss_pred             ccCChhheeee-C-CCEEEEECCCccc
Confidence            68899999997 3 4577899995533

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.21  E-value=0.26  Score=32.13  Aligned_cols=26  Identities=35%  Similarity=0.332  Sum_probs=22.5

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceee
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSF   38 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~   38 (82)
                      .|=.|+|||++..+|.+.-+|||.+-
T Consensus       134 rDiKp~NIll~~~~~~vkl~DFG~a~  159 (273)
T d1xwsa_         134 RDIKDENILIDLNRGELKLIDFGSGA  159 (273)
T ss_dssp             SCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             ccCcccceEEecCCCeEEECccccce
Confidence            56789999999788999999999763

>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=85.88  E-value=0.11  Score=24.77  Aligned_cols=15  Identities=13%  Similarity=0.244  Sum_probs=13.0

Q ss_pred             EEcCCCcEEEEeece
Q psy16910         22 VCTKTGRCVGIDFGY   36 (82)
Q Consensus        22 i~~~tG~v~hiDfg~   36 (82)
                      +|..||+++|+-|.+
T Consensus         4 ~DP~TG~iYH~~f~p   18 (31)
T d1zaka2           4 LDPVTGKIYHLKYSP   18 (31)
T ss_dssp             ECTTTCCEEESSSSC
T ss_pred             CCCCCCcEeEEecCC
Confidence            688999999999964

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=83.87  E-value=0.23  Score=32.95  Aligned_cols=27  Identities=19%  Similarity=0.153  Sum_probs=22.1

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeec
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFG   39 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~   39 (82)
                      .|=.|+||||+...+.+.-+|||.+-.
T Consensus       153 rDiKp~NILi~~~~~~vkl~DFG~a~~  179 (328)
T d3bqca1         153 RDVKPHNVMIDHEHRKLRLIDWGLAEF  179 (328)
T ss_dssp             CCCSGGGEEEETTTTEEEECCGGGCEE
T ss_pred             ccccccceEEcCCCCeeeeccccccee
Confidence            467899999986677788999998743

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=81.20  E-value=0.22  Score=32.40  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=22.6

Q ss_pred             CCCCCCcEEEEcCCCcEEEEeeceeecc
Q psy16910         13 GDRHLENTLVCTKTGRCVGIDFGYSFGV   40 (82)
Q Consensus        13 gDRh~~nili~~~tG~v~hiDfg~~~~~   40 (82)
                      .|=.|+|||++ .+|.+-.+|||.+...
T Consensus       124 rDiKp~NIll~-~~~~~kl~DfG~a~~~  150 (286)
T d1ob3a_         124 RDLKPQNLLIN-REGELKIADFGLARAF  150 (286)
T ss_dssp             SCCCGGGEEEC-TTSCEEECCTTHHHHH
T ss_pred             cCCCCceeeEc-CCCCEEecccccceec
Confidence            46679999997 7899999999987443