Psyllid ID: psy16959

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTAQAQY
Secondary Structure (PSIPRED)
ccEEEEEcccEEEEEEEcccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccEEEEccccccHHHHHHHHHccccccccccccccccccccccccccEEEEcHHHHHHHHHccccEEEEEcccccccccEEHHHHHccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHccccccccccccccHHHHHHHHHcccEEEEEccHHHHcccccccccEEEEEEccccHHHHHHHHHHHcccccccHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccEEEEEEccccHHHHHcccccccEEEEEccEEcccccHHHHHHHHHHHccccccEEEEEccccccccccccccccHHHcEcEcEEcccccccccccEEEEEcccccccHHHHHHHHHHcccEEEcccEEcccccccccEcccEEEccHHHHHHHHHHccEEEEEEEccEEEEcHHHHHHHcccEEEEEccHHHHHHHHHHHHHccccEEEEcccccccHcHHHcccccHHHHHHHHHHccccccccccccHHHcccccccccEEEEEccccccHHHHEEcccccccccccHHHHHHHHHHcccEEEEEccHHHHHHHHHcccccEEEEEccccHHHHHHHHHHccccHHHHHHHccc
Coil and Loop (DISEMBL)
gatirnegdaVIVGRVVKggladrtgllhegdeileingieirgksIHIVCDILVGLTGQEMTMGREawktshafrhtehthfdvdeiltyeevslyyprsnekrpivligppnigrHELRQRLMEDSDrfaaaiphtsrpmkdgevdgqdyhFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDklqagiptlnfDIYALTEtwltdeindpelgfskfnvfrsdrtkqtshksdgggmhviahfdydpeddmyipckelgmsfqkgdiLHVISQddpnwwqayregeedhtlagtsLDAIRTVVNAGKICvlnlhpqslkilrssdlkpfvifvapppfellkqkrirrgdnfktgtaqaqy
Flexible Loop (DISEMBL)
gatirnegdavivgrvvkggladrtgllhegdEILEingieirgksIHIVCDILVGLTGQEMTMGREAWKTSHAFRHTEhthfdvdeiLTYEEVSLyyprsnekrpivligppnIGRHELRQRLMEDSDRFAAAiphtsrpmkdgevDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTkqtshksdgggmhVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVApppfellkqkrirrgdnfktgtaqaqy
Low Complexity Region (SEG)
GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTAQAQY
Disordered region (IsUnstruct)
********DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNI*********************************GQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVF***************GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLK*******************
Disordered Region (DISOPRED)
GATIRNEGDAVIVGRVV********************NGIEIRGKSIHIVCDILVGLTGQEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNV*****************MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTL************NAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP************************
Disordered Region (DISEMBL)
GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSD**********GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFK********
Disordered Region (DISPRO)
GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTK*TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRR*D**KTGTA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTAQAQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
Q8N3R9	675	MAGUK p55 subfamily membe	yes	N/A	0.297	0.161	0.589	1e-31
Q5RDQ2	675	MAGUK p55 subfamily membe	yes	N/A	0.297	0.161	0.589	1e-31
Q9JLB2	675	MAGUK p55 subfamily membe	yes	N/A	0.297	0.161	0.589	4e-31
Q8JHF4	677	MAGUK p55 subfamily membe	yes	N/A	0.300	0.162	0.540	1e-30
O88910	568	MAGUK p55 subfamily membe	no	N/A	0.278	0.179	0.481	3e-19
Q6P0D7	576	MAGUK p55 subfamily membe	no	N/A	0.295	0.187	0.419	1e-18
Q14168	576	MAGUK p55 subfamily membe	no	N/A	0.306	0.194	0.408	4e-18
Q9WV34	552	MAGUK p55 subfamily membe	no	N/A	0.306	0.202	0.408	7e-18
Q13368	585	MAGUK p55 subfamily membe	no	N/A	0.281	0.176	0.448	1e-17
A8KBF6	576	MAGUK p55 subfamily membe	no	N/A	0.295	0.187	0.419	1e-17

>sp|Q8N3R9|MPP5_HUMAN MAGUK p55 subfamily member 5 OS=Homo sapiens GN=MPP5 PE=1 SV=3

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 88/112 (78%), Gaps = 3/112 (2%)

Query: 83  FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRP 141
           +D +EILTYEE+SLY+  +N KRPI+LIGP N G++ELRQRLM ++ DRFA+A+PHT+R 
Sbjct: 458 YDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRS 517

Query: 142 MKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGI 193
            +D EV G+DYHF++R  FE DI A KFIEHGE+EK+ YG  T +D ++  I
Sbjct: 518 RRDQEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYG--TSIDSVRQVI 567

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.
Homo sapiens (taxid: 9606)

>sp|Q5RDQ2|MPP5_PONAB MAGUK p55 subfamily member 5 OS=Pongo abelii GN=MPP5 PE=2 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 88/112 (78%), Gaps = 3/112 (2%)

Query: 83  FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRP 141
           +D +EILTYEE+SLY+  +N KRPI+LIGP N G++ELRQRLM ++ DRFA+A+PHT+R 
Sbjct: 458 YDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRS 517

Query: 142 MKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGI 193
            +D EV G+DYHF++R  FE DI A KFIEHGE+EK+ YG  T +D ++  I
Sbjct: 518 RRDQEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYG--TSIDSVRQVI 567

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.

Pongo abelii (taxid: 9601)

>sp|Q9JLB2|MPP5_MOUSE MAGUK p55 subfamily member 5 OS=Mus musculus GN=Mpp5 PE=1 SV=1

 Score =  135 bits (341), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 88/112 (78%), Gaps = 3/112 (2%)

Query: 83  FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRP 141
           +D +EILTYEE+SLY+  +N KRPI+LIGP N G++ELRQRLM ++ DRFA+A+PHT+R 
Sbjct: 458 YDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRN 517

Query: 142 MKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGI 193
            +D EV G+DYHF++R  FE DI A KFIEHGE+EK+ YG  T +D ++  I
Sbjct: 518 RRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYG--TSIDSVRQVI 567

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.

Mus musculus (taxid: 10090)

>sp|Q8JHF4|MPP5A_DANRE MAGUK p55 subfamily member 5-A OS=Danio rerio GN=mpp5a PE=1 SV=2

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 83/111 (74%), Gaps = 1/111 (0%)

Query: 75  FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLME-DSDRFAA 133
           +   ++  FD +EILTYEE++LY+  +N KRPI LIGPPN G++ELRQRL+  + DRFA 
Sbjct: 452 YNANKNDDFDNEEILTYEEMALYHQPANRKRPIALIGPPNCGQNELRQRLLSTEPDRFAG 511

Query: 134 AIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRT 184
            +PHT+R  +D E +G+DYHF++R  FE+D  A KFIE GE+EK++YG  T
Sbjct: 512 PVPHTTRSRRDAEANGRDYHFVSRQAFEMDSAAGKFIESGEFEKNFYGTST 562

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells (By similarity). Functions in cellular patterning of the retina.

Danio rerio (taxid: 7955)

>sp|O88910|MPP3_MOUSE MAGUK p55 subfamily member 3 OS=Mus musculus GN=Mpp3 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 73/106 (68%), Gaps = 4/106 (3%)

Query: 88  ILTYEEVSLYYPRSNEK-RPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDG 145
           +LTYEEV+ Y  +  E+ R +VLIG      HEL+QR++ ED  +FA A+PHT+RP K  
Sbjct: 368 LLTYEEVARYQHQPGERPRLVVLIGSLGAHLHELKQRVVAEDPQQFAVAVPHTTRPRKSH 427

Query: 146 EVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQA 191
           E DG +YHF+++  FE D+   KF+EHGEY+++ YG  T L+ +QA
Sbjct: 428 ERDGVEYHFVSKQAFEADVHHNKFLEHGEYKENLYG--TSLEAIQA 471

Mus musculus (taxid: 10090)

>sp|Q6P0D7|MPP7_DANRE MAGUK p55 subfamily member 7 OS=Danio rerio GN=mpp7 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 74/112 (66%), Gaps = 4/112 (3%)

Query: 82  HFDVDEILTYEEVSLYYPRSNEK-RPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTS 139
            +D  ++ TYEEV+ Y  +  ++ R +VL+GP  +G +EL+++L+  D+  F+  IPHTS
Sbjct: 345 QYDTADVPTYEEVTTYRRKHGDRHRLVVLVGPTGVGLNELKRKLLISDTQHFSVTIPHTS 404

Query: 140 RPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQA 191
           R  +  E +G +YHFI++  FE DI   KFIEHGEY+ +YYG  T  D +++
Sbjct: 405 RSKRHQESEGVEYHFISKNLFEADIQNNKFIEHGEYKGNYYG--TSFDSVRS 454

Acts as an important adapter that promotes epithelial cell polarity and tight junction formation. Involved in the assembly of protein complexes at sites of cell-cell contact.

Danio rerio (taxid: 7955)

>sp|Q14168|MPP2_HUMAN MAGUK p55 subfamily member 2 OS=Homo sapiens GN=MPP2 PE=1 SV=3

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 70  KTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRL-MEDS 128
           K    +  T++  FD  E+L YEEV+   P    ++ +VLIG   +GR  L+ +L M D 
Sbjct: 342 KKRMMYLTTKNAEFDRHELLIYEEVARMPP--FRRKTLVLIGAQGVGRRSLKNKLIMWDP 399

Query: 129 DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLR 183
           DR+   +P+TSR  KD E +GQ Y F++R + E D+ A +++EHGEYE + YG R
Sbjct: 400 DRYGTTVPYTSRRPKDSEREGQGYSFVSRGEMEADVRAGRYLEHGEYEGNLYGTR 454

Homo sapiens (taxid: 9606)

>sp|Q9WV34|MPP2_MOUSE MAGUK p55 subfamily member 2 OS=Mus musculus GN=Mpp2 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 70  KTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRL-MEDS 128
           K    +  T++  FD  E+L YEEV+   P    ++ +VLIG   +GR  L+ +L + D 
Sbjct: 318 KKRMMYLTTKNAEFDRHELLIYEEVARMPP--FRRKTLVLIGAQGVGRRSLKNKLILWDP 375

Query: 129 DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLR 183
           DR+   +P+TSR  KD E +GQ Y F++R + E DI A +++EHGEYE + YG R
Sbjct: 376 DRYGTTVPYTSRRPKDSEREGQGYSFVSRGEMEADIRAGRYLEHGEYEGNLYGTR 430

Mus musculus (taxid: 10090)

>sp|Q13368|MPP3_HUMAN MAGUK p55 subfamily member 3 OS=Homo sapiens GN=MPP3 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 72/107 (67%), Gaps = 4/107 (3%)

Query: 87  EILTYEEVSLYYPRSNEK-RPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKD 144
           E+LTYEEV+ Y  +  E+ R +VLIG      HEL+Q+++ E+   F  A+PHT+RP K 
Sbjct: 367 ELLTYEEVARYQHQPGERPRLVVLIGSLGARLHELKQKVVAENPQHFGVAVPHTTRPRKS 426

Query: 145 GEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQA 191
            E +G +YHF+++  FE D+   KF+EHGEY+++ YG  T L+ +QA
Sbjct: 427 HEKEGVEYHFVSKQAFEADLHHNKFLEHGEYKENLYG--TSLEAIQA 471

Homo sapiens (taxid: 9606)

>sp|A8KBF6|MPP7_XENTR MAGUK p55 subfamily member 7 OS=Xenopus tropicalis GN=mpp7 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 75/112 (66%), Gaps = 4/112 (3%)

Query: 82  HFDVDEILTYEEVSLYYPRSNEK-RPIVLIGPPNIGRHELRQR-LMEDSDRFAAAIPHTS 139
            +D  ++ TYEEV+LY  + NEK R ++L+GP  +G +EL+++ L+ +S  +   +PHT+
Sbjct: 345 QYDTADVPTYEEVALYQRKPNEKYRLVILVGPVGVGVNELKRKVLIGNSQHYGVTVPHTT 404

Query: 140 RPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQA 191
           R  +  E DG +Y FI++  FE DI   KFIE+GEY+ +YYG  T LD +++
Sbjct: 405 RGKRSQENDGVEYIFISKHLFETDIHNNKFIEYGEYKNNYYG--TSLDSVRS 454

Acts as an important adapter that promotes epithelial cell polarity and tight junction formation. Involved in the assembly of protein complexes at sites of cell-cell contact.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
326920631	626	PREDICTED: MAGUK p55 subfamily member 5-	0.521	0.305	0.430	3e-46
242012469	751	conserved hypothetical protein [Pediculu	0.303	0.147	0.787	1e-45
307180166	1693	MAGUK p55 subfamily member 5 [Camponotus	0.270	0.058	0.838	2e-45
270005717	1049	hypothetical protein TcasGA2_TC007820 [T	0.295	0.102	0.8	3e-45
189236143	1043	PREDICTED: similar to AGAP002711-PA [Tri	0.295	0.103	0.8	3e-45
307207123	1764	MAGUK p55 subfamily member 5 [Harpegnath	0.270	0.056	0.828	4e-45
328697738	1016	PREDICTED: MAGUK p55 subfamily member 5-	0.297	0.107	0.774	4e-45
340721719	1699	PREDICTED: hypothetical protein LOC10064	0.267	0.057	0.818	6e-45
383864627	1509	PREDICTED: uncharacterized protein LOC10	0.270	0.065	0.828	6e-45
350406928	1701	PREDICTED: hypothetical protein LOC10074	0.267	0.057	0.818	7e-45

>gi|326920631|ref|XP_003206572.1| PREDICTED: MAGUK p55 subfamily member 5-like [Meleagris gallopavo]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/253 (43%), Positives = 147/253 (58%), Gaps = 62/253 (24%)

Query: 1   GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG---- 56
           GAT+RNE D+VI+ R+VKGG A+++GLLHEGDE+LEINGIEIRGK ++ V D+L      
Sbjct: 268 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLADMHGT 327

Query: 57  ------------------------------LTGQEMTMGREAWKTSHA------------ 74
                                         L+G+     REA K +              
Sbjct: 328 LTFVLIPSQQSKPPPAKETVLTAFSFFLKMLSGKSFQQQREAMKQTIEEDKEPEKSGKLW 387

Query: 75  -------------FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELR 121
                        +   ++  +D +EILTYEE+SLY+  +N KRPIVLIGP N G++ELR
Sbjct: 388 CAKKNKKKRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIVLIGPQNCGQNELR 447

Query: 122 QRLMEDS-DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYY 180
           QRLM +  DRFA+A+PHT+R  ++ EV G+DYHFI+R  FE DI A KFIE+GE+EK+ Y
Sbjct: 448 QRLMNNEVDRFASAVPHTTRSRRETEVAGRDYHFISRQAFENDIAAGKFIEYGEFEKNLY 507

Query: 181 GLRTKLDKLQAGI 193
           G  T +D ++  I
Sbjct: 508 G--TSIDSVRQVI 518

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242012469|ref|XP_002426955.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511184|gb|EEB14217.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 99/113 (87%), Gaps = 2/113 (1%)

Query: 83  FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
           +D DEILTYEEVSLYYPRSN KRPIVLIGPPNIGRHELRQRLMEDS+RFAAAIPHTSR  
Sbjct: 533 YDADEILTYEEVSLYYPRSNHKRPIVLIGPPNIGRHELRQRLMEDSERFAAAIPHTSRAR 592

Query: 143 KDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPT 195
           K+ EVDGQDYHF +RAQFE DILARKF+EHGEYEK+YYG  T LD ++  + +
Sbjct: 593 KESEVDGQDYHFTSRAQFESDILARKFVEHGEYEKAYYG--TSLDAIRTVVSS 643

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180166|gb|EFN68200.1| MAGUK p55 subfamily member 5 [Camponotus floridanus]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 93/99 (93%)

Query: 83   FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
            +D +E+LTYEEV+LYYPR+N KRPIVLIGPPNIGRHELRQRLM+DS+RFAAAIPHTSRP 
Sbjct: 1476 YDSEEVLTYEEVALYYPRANHKRPIVLIGPPNIGRHELRQRLMQDSERFAAAIPHTSRPK 1535

Query: 143  KDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181
            KD EVDGQDYHFI+RAQFE DIL RKF+EHGEYEK+YYG
Sbjct: 1536 KDSEVDGQDYHFISRAQFESDILCRKFVEHGEYEKAYYG 1574

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005717|gb|EFA02165.1| hypothetical protein TcasGA2_TC007820 [Tribolium castaneum]

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 99/110 (90%), Gaps = 2/110 (1%)

Query: 84  DVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK 143
           D +EILTYEEVSLYYPR+N KRPIVLIGPPNIGRHELRQRLMEDS+RFAAAIPHTSR  K
Sbjct: 832 DPEEILTYEEVSLYYPRANNKRPIVLIGPPNIGRHELRQRLMEDSERFAAAIPHTSRARK 891

Query: 144 DGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGI 193
           + EVDGQDYHFITRAQFE DIL+RKF+EHGEYEK+YYG  T LD +++ +
Sbjct: 892 ENEVDGQDYHFITRAQFEADILSRKFVEHGEYEKAYYG--TSLDAIRSVV 939

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236143|ref|XP_974746.2| PREDICTED: similar to AGAP002711-PA [Tribolium castaneum]

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 99/110 (90%), Gaps = 2/110 (1%)

Query: 84  DVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK 143
           D +EILTYEEVSLYYPR+N KRPIVLIGPPNIGRHELRQRLMEDS+RFAAAIPHTSR  K
Sbjct: 826 DPEEILTYEEVSLYYPRANNKRPIVLIGPPNIGRHELRQRLMEDSERFAAAIPHTSRARK 885

Query: 144 DGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGI 193
           + EVDGQDYHFITRAQFE DIL+RKF+EHGEYEK+YYG  T LD +++ +
Sbjct: 886 ENEVDGQDYHFITRAQFEADILSRKFVEHGEYEKAYYG--TSLDAIRSVV 933

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207123|gb|EFN84932.1| MAGUK p55 subfamily member 5 [Harpegnathos saltator]

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 93/99 (93%)

Query: 83   FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
            +D +E+LTYEEV+LYYPR+N KRPIVLIGPPNIGRHELRQRLM+DS+RFAAAIPHTSRP 
Sbjct: 1548 YDSEEVLTYEEVALYYPRANHKRPIVLIGPPNIGRHELRQRLMQDSERFAAAIPHTSRPK 1607

Query: 143  KDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181
            KD EVDGQDYHFI+R+QFE DIL RKF+EHGEYEK+YYG
Sbjct: 1608 KDSEVDGQDYHFISRSQFESDILCRKFVEHGEYEKAYYG 1646

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697738|ref|XP_001942812.2| PREDICTED: MAGUK p55 subfamily member 5-like [Acyrthosiphon pisum]

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 99/111 (89%), Gaps = 2/111 (1%)

Query: 83  FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
           ++ +EILTYEEV+LYYPR+N KRPIVLIGPPNIGRHELRQRLMED DRFAAAIPHTSR  
Sbjct: 797 YEAEEILTYEEVALYYPRANHKRPIVLIGPPNIGRHELRQRLMEDRDRFAAAIPHTSRAK 856

Query: 143 KDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGI 193
           KDGE+DGQDYHFITR QFE DIL+RKF+EHGEYEK+YYG  T LD +++ +
Sbjct: 857 KDGEIDGQDYHFITRVQFESDILSRKFVEHGEYEKAYYG--TSLDAIRSVV 905

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721719|ref|XP_003399263.1| PREDICTED: hypothetical protein LOC100648370 [Bombus terrestris]

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 81/99 (81%), Positives = 93/99 (93%)

Query: 83   FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
            +D +E+LTYEEV+LYYPR+N KRP+VLIGPPNIGRHELRQRLM+DS+RFAAAIPHTSRP 
Sbjct: 1483 YDSEEVLTYEEVALYYPRANHKRPVVLIGPPNIGRHELRQRLMQDSERFAAAIPHTSRPR 1542

Query: 143  KDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181
            KD EVDGQDYHFI+R+QFE DIL RKF+EHGEYEK+YYG
Sbjct: 1543 KDSEVDGQDYHFISRSQFESDILCRKFVEHGEYEKAYYG 1581

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864627|ref|XP_003707779.1| PREDICTED: uncharacterized protein LOC100882825 [Megachile rotundata]

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 93/99 (93%)

Query: 83   FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
            +D +E+LTYEEV+LYYPR+N KRPIVLIGPPNIGRHELRQRLM+DS+RFAAAIPHTSRP 
Sbjct: 1293 YDSEEVLTYEEVALYYPRANHKRPIVLIGPPNIGRHELRQRLMQDSERFAAAIPHTSRPR 1352

Query: 143  KDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181
            KD EVDGQDYHFI+R+QFE DIL RKF+EHGEYEK+YYG
Sbjct: 1353 KDSEVDGQDYHFISRSQFESDILCRKFVEHGEYEKAYYG 1391

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406928|ref|XP_003487926.1| PREDICTED: hypothetical protein LOC100743494 [Bombus impatiens]

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 81/99 (81%), Positives = 93/99 (93%)

Query: 83   FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
            +D +E+LTYEEV+LYYPR+N KRP+VLIGPPNIGRHELRQRLM+DS+RFAAAIPHTSRP 
Sbjct: 1485 YDSEEVLTYEEVALYYPRANHKRPVVLIGPPNIGRHELRQRLMQDSERFAAAIPHTSRPR 1544

Query: 143  KDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181
            KD EVDGQDYHFI+R+QFE DIL RKF+EHGEYEK+YYG
Sbjct: 1545 KDSEVDGQDYHFISRSQFESDILCRKFVEHGEYEKAYYG 1583

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
UNIPROTKB|E1C3F8	675	MPP5 "Uncharacterized protein"	0.311	0.168	0.555	2e-68
UNIPROTKB|Q8N3R9	675	MPP5 "MAGUK p55 subfamily memb	0.311	0.168	0.555	4.3e-68
UNIPROTKB|E2QY99	675	MPP5 "Uncharacterized protein"	0.311	0.168	0.555	4.3e-68
MGI|MGI:1927339	675	Mpp5 "membrane protein, palmit	0.311	0.168	0.555	5.5e-68
RGD|1308071	675	Mpp5 "membrane protein, palmit	0.311	0.168	0.555	5.5e-68
UNIPROTKB|E1BIQ8	675	MPP5 "Uncharacterized protein"	0.311	0.168	0.555	5.5e-68
FB|FBgn0261873	2020	sdt "stardust" [Drosophila mel	0.286	0.051	0.728	8.6e-57
ZFIN|ZDB-GENE-020712-1	703	mpp5a "membrane protein, palmi	0.325	0.169	0.516	6.1e-49
UNIPROTKB|F1SA41	676	MPP5 "Uncharacterized protein"	0.289	0.156	0.596	7.6e-50
WB|WBGene00006467	668	magu-2 [Caenorhabditis elegans	0.180	0.098	0.626	3.7e-41

UNIPROTKB|E1C3F8 MPP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 335 (123.0 bits), Expect = 2.0e-68, Sum P(3) = 2.0e-68
 Identities = 65/117 (55%), Positives = 89/117 (76%)

Query:    75 FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDS-DRFAA 133
             +   ++  +D +EILTYEE+SLY+  +N KRPIVLIGP N G++ELRQRLM +  DRFA+
Sbjct:   450 YNANKNDDYDNEEILTYEEMSLYHQPANRKRPIVLIGPQNCGQNELRQRLMNNEVDRFAS 509

Query:   134 AIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQ 190
             A+PHT+R  ++ EV G+DYHFI+R  FE DI A KFIE+GE+EK+ YG  T +D ++
Sbjct:   510 AVPHTTRSRRETEVAGRDYHFISRQAFENDIAAGKFIEYGEFEKNLYG--TSIDSVR 564

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IEA

GO:0035749 "myelin sheath adaxonal region" evidence=IEA

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IEA

GO:0043219 "lateral loop" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

UNIPROTKB|Q8N3R9 MPP5 "MAGUK p55 subfamily member 5" [Homo sapiens (taxid:9606)]

 Score = 347 (127.2 bits), Expect = 4.3e-68, Sum P(3) = 4.3e-68
 Identities = 65/117 (55%), Positives = 90/117 (76%)

Query:    75 FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAA 133
             +   ++  +D +EILTYEE+SLY+  +N KRPI+LIGP N G++ELRQRLM ++ DRFA+
Sbjct:   450 YNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFAS 509

Query:   134 AIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQ 190
             A+PHT+R  +D EV G+DYHF++R  FE DI A KFIEHGE+EK+ YG  T +D ++
Sbjct:   510 AVPHTTRSRRDQEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYG--TSIDSVR 564

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IEA

GO:0032288 "myelin assembly" evidence=IEA

GO:0035749 "myelin sheath adaxonal region" evidence=IEA

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IEA

GO:0043219 "lateral loop" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0070830 "tight junction assembly" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

UNIPROTKB|E2QY99 MPP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 347 (127.2 bits), Expect = 4.3e-68, Sum P(3) = 4.3e-68
 Identities = 65/117 (55%), Positives = 90/117 (76%)

Query:    75 FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAA 133
             +   ++  +D +EILTYEE+SLY+  +N KRPI+LIGP N G++ELRQRLM ++ DRFA+
Sbjct:   450 YNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFAS 509

Query:   134 AIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQ 190
             A+PHT+R  +D EV G+DYHF++R  FE DI A KFIEHGE+EK+ YG  T +D ++
Sbjct:   510 AVPHTTRSRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYG--TSIDSVR 564

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0043219 "lateral loop" evidence=IEA

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IEA

GO:0035749 "myelin sheath adaxonal region" evidence=IEA

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1927339 Mpp5 "membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)" [Mus musculus (taxid:10090)]

 Score = 346 (126.9 bits), Expect = 5.5e-68, Sum P(3) = 5.5e-68
 Identities = 65/117 (55%), Positives = 90/117 (76%)

Query:    75 FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAA 133
             +   ++  +D +EILTYEE+SLY+  +N KRPI+LIGP N G++ELRQRLM ++ DRFA+
Sbjct:   450 YNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFAS 509

Query:   134 AIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQ 190
             A+PHT+R  +D EV G+DYHF++R  FE DI A KFIEHGE+EK+ YG  T +D ++
Sbjct:   510 AVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYG--TSIDSVR 564

GO:0004385 "guanylate kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005923 "tight junction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISS

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IMP

GO:0032288 "myelin assembly" evidence=ISO

GO:0035749 "myelin sheath adaxonal region" evidence=IDA

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IMP

GO:0043219 "lateral loop" evidence=IDA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IDA

GO:0043234 "protein complex" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=ISS

GO:0090002 "establishment of protein localization to plasma membrane" evidence=ISO

RGD|1308071 Mpp5 "membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)" [Rattus norvegicus (taxid:10116)]

 Score = 346 (126.9 bits), Expect = 5.5e-68, Sum P(3) = 5.5e-68
 Identities = 65/117 (55%), Positives = 90/117 (76%)

Query:    75 FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAA 133
             +   ++  +D +EILTYEE+SLY+  +N KRPI+LIGP N G++ELRQRLM ++ DRFA+
Sbjct:   450 YNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFAS 509

Query:   134 AIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQ 190
             A+PHT+R  +D EV G+DYHF++R  FE DI A KFIEHGE+EK+ YG  T +D ++
Sbjct:   510 AVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYG--TSIDSVR 564

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IEA;ISO

GO:0032288 "myelin assembly" evidence=IMP

GO:0035749 "myelin sheath adaxonal region" evidence=IEA;ISO

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IEA;ISO

GO:0043219 "lateral loop" evidence=IEA;ISO

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IDA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IMP

UNIPROTKB|E1BIQ8 MPP5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 346 (126.9 bits), Expect = 5.5e-68, Sum P(3) = 5.5e-68
 Identities = 65/117 (55%), Positives = 90/117 (76%)

Query:    75 FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAA 133
             +   ++  +D +EILTYEE+SLY+  +N KRPI+LIGP N G++ELRQRLM ++ DRFA+
Sbjct:   450 YNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFAS 509

Query:   134 AIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQ 190
             A+PHT+R  +D EV G+DYHF++R  FE DI A KFIEHGE+EK+ YG  T +D ++
Sbjct:   510 AVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYG--TSIDSVR 564

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0043219 "lateral loop" evidence=IEA

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IEA

GO:0035749 "myelin sheath adaxonal region" evidence=IEA

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0261873 sdt "stardust" [Drosophila melanogaster (taxid:7227)]

 Score = 422 (153.6 bits), Expect = 8.6e-57, Sum P(2) = 8.6e-57
 Identities = 78/107 (72%), Positives = 92/107 (85%)

Query:    84 DVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK 143
             D +EILTYEEV+LYYPR+  KRPIVLIGPPNIGRHELRQRLM DS+RF+AA+PHTSR  +
Sbjct:  1799 DPEEILTYEEVALYYPRATHKRPIVLIGPPNIGRHELRQRLMADSERFSAAVPHTSRARR 1858

Query:   144 DGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQ 190
             +GEV G DYHFITR  FE DILAR+F+EHGEYEK+YYG  T L+ ++
Sbjct:  1859 EGEVPGVDYHFITRQAFEADILARRFVEHGEYEKAYYG--TSLEAIR 1903

GO:0004385 "guanylate kinase activity" evidence=ISS;NAS

GO:0016020 "membrane" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0016324 "apical plasma membrane" evidence=NAS;IDA;TAS

GO:0045186 "zonula adherens assembly" evidence=IMP;TAS

GO:0002009 "morphogenesis of an epithelium" evidence=NAS;TAS

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=IMP

GO:0005912 "adherens junction" evidence=IDA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEP;IMP;IPI

GO:0045196 "establishment or maintenance of neuroblast polarity" evidence=IEP;IMP

GO:0045179 "apical cortex" evidence=IDA

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0005913 "cell-cell adherens junction" evidence=NAS

GO:0007043 "cell-cell junction assembly" evidence=NAS

GO:0035003 "subapical complex" evidence=TAS;IPI

GO:0005918 "septate junction" evidence=TAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

ZFIN|ZDB-GENE-020712-1 mpp5a "membrane protein, palmitoylated 5a (MAGUK p55 subfamily member 5a)" [Danio rerio (taxid:7955)]

 Score = 334 (122.6 bits), Expect = 6.1e-49, Sum P(2) = 6.1e-49
 Identities = 63/122 (51%), Positives = 88/122 (72%)

Query:    75 FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLME-DSDRFAA 133
             +   ++  FD +EILTYEE++LY+  +N KRPI LIGPPN G++ELRQRL+  + DRFA 
Sbjct:   478 YNANKNDDFDNEEILTYEEMALYHQPANRKRPIALIGPPNCGQNELRQRLLSTEPDRFAG 537

Query:   134 AIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGI 193
              +PHT+R  +D E +G+DYHF++R  FE+D  A KFIE GE+EK++YG  T  D ++  I
Sbjct:   538 PVPHTTRSRRDAEANGRDYHFVSRQAFEMDSAAGKFIESGEFEKNFYG--TSTDSVRQVI 595

Query:   194 PT 195
              T
Sbjct:   596 NT 597

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0045176 "apical protein localization" evidence=IGI

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=IMP

GO:0043296 "apical junction complex" evidence=IDA

GO:0001841 "neural tube formation" evidence=IMP

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0001917 "photoreceptor inner segment" evidence=IDA

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0031226 "intrinsic to plasma membrane" evidence=IDA

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0002011 "morphogenesis of an epithelial sheet" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0007420 "brain development" evidence=IMP

GO:0048699 "generation of neurons" evidence=IMP

GO:0008078 "mesodermal cell migration" evidence=IMP

GO:0005923 "tight junction" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0021744 "dorsal motor nucleus of vagus nerve development" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IEA

UNIPROTKB|F1SA41 MPP5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 346 (126.9 bits), Expect = 7.6e-50, Sum P(2) = 7.6e-50
 Identities = 65/109 (59%), Positives = 87/109 (79%)

Query:    83 FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRP 141
             +D +EILTYEE+SLY+  +N KRPI+LIGP N G++ELRQRLM ++ DRFA+A+PHT+R 
Sbjct:   459 YDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRS 518

Query:   142 MKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQ 190
              +D EV G+DYHF++R  FE DI A KFIEHGE+EK+ YG  T +D ++
Sbjct:   519 RRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYG--TSIDSVR 565

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0043219 "lateral loop" evidence=IEA

GO:0035750 "protein localization to myelin sheath abaxonal region" evidence=IEA

GO:0035749 "myelin sheath adaxonal region" evidence=IEA

GO:0032287 "peripheral nervous system myelin maintenance" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00006467 magu-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 238 (88.8 bits), Expect = 3.7e-41, Sum P(3) = 3.7e-41
 Identities = 42/67 (62%), Positives = 52/67 (77%)

Query:   233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
             T+ KS     H+ A FDYDPEDD+Y+PCKEL M FQ+GDILHV++  D NWWQAYR+GE+
Sbjct:   331 TAKKSQQHVQHLRALFDYDPEDDVYVPCKELAMKFQRGDILHVLNTKDDNWWQAYRDGED 390

Query:   293 -DHTLAG 298
               H+LAG
Sbjct:   391 IQHSLAG 397

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	LOW CONFIDENCE prediction!
4th Layer	2.7.4.8	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	366
cd12036	63	cd12036, SH3_MPP5, Src Homology 3 domain of Membra	4e-36
cd11862	61	cd11862, SH3_MPP, Src Homology 3 domain of Membran	2e-27
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	3e-21
cd12035	62	cd12035, SH3_MPP1-like, Src Homology 3 domain of M	4e-19
TIGR03263	179	TIGR03263, guanyl_kin, guanylate kinase	1e-18
cd00071	137	cd00071, GMPK, Guanosine monophosphate kinase (GMP	3e-18
cd12037	59	cd12037, SH3_MPP2, Src Homology 3 domain of Membra	1e-17
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	5e-17
cd12033	61	cd12033, SH3_MPP7, Src Homology 3 domain of Membra	6e-17
PRK00300	205	PRK00300, gmk, guanylate kinase; Provisional	1e-16
cd12081	62	cd12081, SH3_CASK, Src Homology 3 domain of Calciu	2e-16
cd12080	62	cd12080, SH3_MPP1, Src Homology 3 domain of Membra	4e-16
cd12039	62	cd12039, SH3_MPP3, Src Homology 3 domain of Membra	7e-16
cd12038	61	cd12038, SH3_MPP6, Src Homology 3 domain of Membra	8e-16
COG0194	191	COG0194, Gmk, Guanylate kinase [Nucleotide transpo	9e-16
cd12034	61	cd12034, SH3_MPP4, Src Homology 3 domain of Membra	3e-12
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	6e-12
PRK14738	206	PRK14738, gmk, guanylate kinase; Provisional	1e-11
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-10
cd11861	61	cd11861, SH3_DLG-like, Src Homology 3 domain of Di	2e-10
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	4e-10
smart00326	56	smart00326, SH3, Src homology 3 domains	4e-10
PLN02772	398	PLN02772, PLN02772, guanylate kinase	8e-10
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	3e-09
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	1e-08
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	2e-08
cd12032	74	cd12032, SH3_DLG2, Src Homology 3 domain of Disks	3e-08
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	9e-08
cd12029	67	cd12029, SH3_DLG3, Src Homology 3 domain of Disks	1e-07
PLN02772	398	PLN02772, PLN02772, guanylate kinase	2e-07
cd12031	67	cd12031, SH3_DLG1, Src Homology 3 domain of Disks	2e-07
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	4e-07
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	8e-07
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	2e-06
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	4e-06
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	4e-06
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	5e-06
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	5e-06
pfam00018	47	pfam00018, SH3_1, SH3 domain	6e-06
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	6e-06
cd12030	66	cd12030, SH3_DLG4, Src Homology 3 domain of Disks	1e-05
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	6e-05
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	7e-05
TIGR03263	179	TIGR03263, guanyl_kin, guanylate kinase	8e-05
PRK14737	186	PRK14737, gmk, guanylate kinase; Provisional	1e-04
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	1e-04
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	1e-04
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	2e-04
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	2e-04
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	3e-04
cd00071	137	cd00071, GMPK, Guanosine monophosphate kinase (GMP	4e-04
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	6e-04
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	6e-04
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	8e-04
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	0.001
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	0.002
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	0.002
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	0.003
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	0.004

>gnl|CDD|212969 cd12036, SH3_MPP5, Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)

 Score =  125 bits (315), Expect = 4e-36
 Identities = 49/57 (85%), Positives = 54/57 (94%), Gaps = 1/57 (1%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAG 298
           HV AHFDYDPEDD YIPC+ELG+SFQKGDILHVISQ+DPNWWQAYREGEED+ +LAG
Sbjct: 1   HVRAHFDYDPEDDPYIPCRELGLSFQKGDILHVISQEDPNWWQAYREGEEDNQSLAG 57

MPP5, also called PALS1 (Protein associated with Lin7) or Nagie oko protein in zebrafish or Stardust in Drosophila, is a scaffolding protein which associates with Crumbs homolog 1 (CRB1), CRB2, or CRB3 through its PDZ domain and with PALS1-associated tight junction protein (PATJ) or multi-PDZ domain protein 1 (MUPP1) through its L27 domain. The resulting tri-protein complexes are core proteins of the Crumb complex, which localizes at tight junctions or subapical regions, and is involved in the maintenance of apical-basal polarity in epithelial cells and the morphogenesis and function of photoreceptor cells. MPP5 is critical for the proper stratification of the retina and is also expressed in T lymphocytes where it is important for TCR-mediated activation of NFkB. Drosophila Stardust exists in several isoforms, some of which show opposing functions in photoreceptor cells, which suggests that the relative ratio of different Crumbs complexes regulates photoreceptor homeostasis. MPP5 contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212796 cd11862, SH3_MPP, Src Homology 3 domain of Membrane Protein, Palmitoylated (or MAGUK p55 subfamily member) proteins

 Score =  102 bits (256), Expect = 2e-27
 Identities = 32/49 (65%), Positives = 40/49 (81%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
            V A FDYDPE+D  IPCKE G+SF+KGDIL +++QDDPNWWQA + G+
Sbjct: 1   FVRALFDYDPEEDPLIPCKEAGLSFKKGDILQIVNQDDPNWWQARKVGD 49

The MPP/p55 subfamily of MAGUK (membrane-associated guanylate kinase) proteins includes at least eight vertebrate members (MPP1-7 and CASK), four Drosophila proteins (Stardust, Varicose, CASK and Skiff), and other similar proteins; they all contain one each of the core of three domains characteristic of MAGUK proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, most members except for MPP1 contain N-terminal L27 domains and some also contain a Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. CASK has an additional calmodulin-dependent kinase (CaMK)-like domain at the N-terminus. Members of this subfamily are scaffolding proteins that play important roles in regulating and establishing cell polarity, cell adhesion, and synaptic targeting and transmission, among others. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score = 89.7 bits (223), Expect = 3e-21
 Identities = 34/78 (43%), Positives = 56/78 (71%), Gaps = 1/78 (1%)

Query: 105 RPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
           RPIVL GP  +G+  +++ L+ E  ++F  ++ HT+RP + GEVDG+DYHF+++ + E D
Sbjct: 3   RPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMEND 62

Query: 164 ILARKFIEHGEYEKSYYG 181
           I A +F+E+ E+  +YYG
Sbjct: 63  ISANEFLEYAEFNGNYYG 80

Length = 183

>gnl|CDD|212968 cd12035, SH3_MPP1-like, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)-like proteins

 Score = 80.2 bits (198), Expect = 4e-19
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAG 298
           +V A FDYDP  D  IPC++ G++F+ GDIL +IS+DD NWWQA + G      AG
Sbjct: 1   YVRAQFDYDPSKDDLIPCQQAGIAFKTGDILQIISKDDHNWWQARKPGASKEP-AG 55

This subfamily includes MPP1, CASK (Calcium/calmodulin-dependent Serine protein Kinase), Caenorhabditis elegans lin-2, and similar proteins. MPP1 and CASK are scaffolding proteins from the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). In addition, they also have the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. CASK and lin-2 also contain an N-terminal calmodulin-dependent kinase (CaMK)-like domain and two L27 domains. MPP1 is ubiquitously-expressed and plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. CASK is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase

 Score = 82.5 bits (205), Expect = 1e-18
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%)

Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
             IV+ GP   G+  L + L+E+      +I  T+R  + GEVDG DY F+++ +FE  I
Sbjct: 1   LLIVISGPSGAGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMI 60

Query: 165 LARKFIEHGEYEKSYYG-LRTKLDK-LQAGIPTLNFDI 200
            A +F+E  E   +YYG  ++ +++ L AG   L  +I
Sbjct: 61  KAGEFLEWAEVHGNYYGTPKSPVEEALAAGKDVL-LEI 97

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 179

>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2

 Score = 79.9 bits (198), Expect = 3e-18
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 106 PIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
            IVL GP  +G+  L +RL+E+    F  ++ HT+R  + GEVDG DYHF+++ +FE  I
Sbjct: 1   LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLI 60

Query: 165 LARKFIEHGEYEKSYYG 181
              +F+E  E+  +YYG
Sbjct: 61  ENGEFLEWAEFHGNYYG 77

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137

>gnl|CDD|212970 cd12037, SH3_MPP2, Src Homology 3 domain of Membrane Protein, Palmitoylated 2 (or MAGUK p55 subfamily member 2)

 Score = 76.1 bits (187), Expect = 1e-17
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           V  HFDYDP  D  IPCKE G+ F+ GD+L +++Q+DPNWWQA
Sbjct: 2   VKCHFDYDPSSDSLIPCKEAGLKFRAGDLLQIVNQEDPNWWQA 44

MPP2 is a scaffolding protein that interacts with the non-receptor tyrosine kinase c-Src in epithelial cells to negatively regulate its activity and morphological function. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score = 77.7 bits (192), Expect = 5e-17
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 116 GRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGE 174
           G+  L   L+ E  D F   + HT+RP + GEV+G DYHF+++ +FE DI +  F+E GE
Sbjct: 4   GKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLEWGE 63

Query: 175 YEKSYYG 181
           YE +YYG
Sbjct: 64  YEGNYYG 70

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|212966 cd12033, SH3_MPP7, Src Homology 3 domain of Membrane Protein, Palmitoylated 7 (or MAGUK p55 subfamily member 7)

 Score = 73.9 bits (181), Expect = 6e-17
 Identities = 29/48 (60%), Positives = 37/48 (77%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           + A FDY+P +D  IPCKE G+SF+KGDIL ++SQDD  WWQA  EG+
Sbjct: 2   IKALFDYNPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAKHEGD 49

MPP7 is a scaffolding protein that binds to DLG1 and promotes tight junction formation and epithelial cell polarity. Mutations in the MPP7 gene may be associated with the pathogenesis of diabetes and extreme bone mineral density. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILA 166
           IVL GP   G+  L + L+E       ++  T+R  + GEVDG DY F+++ +FE  I  
Sbjct: 8   IVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIEN 67

Query: 167 RKFIEHGEYEKSYYG-LRTKLDK-LQAGIPTLNFDI 200
            +F+E  E   +YYG  R+ +++ L AG   L  +I
Sbjct: 68  GEFLEWAEVFGNYYGTPRSPVEEALAAGKDVL-LEI 102

Length = 205

>gnl|CDD|213014 cd12081, SH3_CASK, Src Homology 3 domain of Calcium/calmodulin-dependent Serine protein Kinase

 Score = 72.6 bits (178), Expect = 2e-16
 Identities = 28/53 (52%), Positives = 37/53 (69%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
           +V A F+YDP  D  IPCK+ G+ F+ GDIL +IS+DD NWWQA  E  ++ T
Sbjct: 1   YVRAQFEYDPLKDDLIPCKQAGIRFRVGDILQIISKDDHNWWQAKLENSKNGT 53

CASK is a scaffolding protein that is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. CASK interacts with many different binding partners including parkin, neurexin, syndecans, calcium channel proteins, caskin, among others, to perform specific functions in different subcellular locations. Disruption of the CASK gene in mice results in neonatal lethality while mutations in the human gene have been associated with X-linked mental retardation. Drosophila CASK is associated with both pre- and postsynaptic membranes and is crucial in synaptic transmission and vesicle cycling. CASK contains an N-terminal calmodulin-dependent kinase (CaMK)-like domain, two L27 domains, followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|213013 cd12080, SH3_MPP1, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)

 Score = 71.5 bits (175), Expect = 4e-16
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
           A FDYDP+ D  IPCKE G+ FQ GDI+ +I++DD NWWQ   EG
Sbjct: 4   AQFDYDPKKDNLIPCKEAGLKFQTGDIIQIINKDDSNWWQGRVEG 48

MPP1, also called 55 kDa erythrocyte membrane protein (p55), is a ubiquitously-expressed scaffolding protein that plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. It was originally identified as an erythrocyte protein that stabilizes the actin cytoskeleton to the plasma membrane by forming a complex with 4.1R protein and glycophorin C. MPP1 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains the three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212972 cd12039, SH3_MPP3, Src Homology 3 domain of Membrane Protein, Palmitoylated 3 (or MAGUK p55 subfamily member 3)

 Score = 71.1 bits (174), Expect = 7e-16
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           A FDY+P +D  IPC+E G+ F++ DIL V+SQDDP WWQA R G+
Sbjct: 4   ALFDYNPYEDRAIPCQEAGLPFKRRDILEVVSQDDPTWWQAKRVGD 49

MPP3 is a scaffolding protein that colocalizes with MPP5 and CRB1 at the subdpical region adjacent to adherens junctions and may function in photoreceptor polarity. It interacts with some nectins and regulates their trafficking and processing. Nectins are cell-cell adhesion proteins involved in the establishment apical-basal polarity at cell adhesion sites. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212971 cd12038, SH3_MPP6, Src Homology 3 domain of Membrane Protein, Palmitoylated 6 (or MAGUK p55 subfamily member 6)

 Score = 70.9 bits (173), Expect = 8e-16
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           V  HFDY+P +D  IPCKE G+ F KG+IL +++++DPNWWQA
Sbjct: 2   VKCHFDYNPYNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQA 44

MPP6, also called Veli-associated MAGUK 1 (VAM-1) or PALS2, is a scaffolding protein that binds to Veli-1, a homolog of Caenorhabditis Lin-7. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]

 Score = 74.5 bits (184), Expect = 9e-16
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
             IVL GP  +G+  L + L+ED D+   ++  T+R  + GEVDG DY F+T  +FE  I
Sbjct: 5   LLIVLSGPSGVGKSTLVKALLED-DKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELI 63

Query: 165 LARKFIEHGEYEKSYYG-LRTKLDK-LQAGIPTLNFDI 200
              +F+E  EY  +YYG  R  +++ L  G   +  DI
Sbjct: 64  ERDEFLEWAEYHGNYYGTSREPVEQALAEGKDVI-LDI 100

Length = 191

>gnl|CDD|212967 cd12034, SH3_MPP4, Src Homology 3 domain of Membrane Protein, Palmitoylated 4 (or MAGUK p55 subfamily member 4)

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           +V A  DY P+ D  IPC + G+ F+KGDIL ++ Q+D  WWQA
Sbjct: 1   YVRAMVDYWPQQDPSIPCADAGLPFRKGDILQIVDQNDSLWWQA 44

MPP4, also called Disks Large homolog 6 (DLG6) or Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 5 protein (ALS2CR5), is a retina-specific scaffolding protein that plays a role in organizing presynaptic protein complexes in the photoreceptor synapse, where it localizes to the plasma membrane. It is required in the proper localization of calcium ATPases and for maintenance of calcium homeostasis. MPP4 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNF 357
           GTS + IR V   GK C+L++ PQ +K LR + L P VIF+APP  E L+++  +RG   
Sbjct: 70  GTSKETIRQVAEKGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRQRGTET 129

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query: 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILA 166
           +V+ GP  +G+  +  R+ E    F   +  T+RP + GE+DG DYHF+T  +F   I  
Sbjct: 16  VVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQ 75

Query: 167 RKFIEHGEYEKSYYGL 182
            + +E  E   +YYG+
Sbjct: 76  NELLEWAEVYGNYYGV 91

Length = 206

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 1  GATIRNEGDA---VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G ++R   D+   + V RV  GG A+R G L  GD ILE+NG+ + G +     ++L
Sbjct: 15 GFSLRGGKDSGGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELL 70

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|212795 cd11861, SH3_DLG-like, Src Homology 3 domain of Disks large homolog proteins

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE---GEED 293
           +V A FDYDP  D  +P +  G+SF+ GDILHV +  D  WWQA R    GEE+
Sbjct: 1   YVRALFDYDPSRDSGLPSQ--GLSFKFGDILHVTNASDDEWWQARRVTPNGEEE 52

The DLG-like proteins are scaffolding proteins that cluster at synapses and are also called PSD (postsynaptic density)-95 proteins or SAPs (synapse-associated proteins). They play important roles in synaptic development and plasticity, cell polarity, migration and proliferation. They are members of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG-like proteins contain three PDZ domains and varying N-terminal regions. All DLG proteins exist as alternatively-spliced isoforms. Vertebrates contain four DLG proteins from different genes, called DLG1-4. DLG4 and DLG2 are found predominantly at postsynaptic sites and they mediate surface ion channel and receptor clustering. DLG3 is found axons and some presynaptic terminals. DLG1 interacts with AMPA-type glutamate receptors and is critical in their maturation and delivery to synapses. The SH3 domain of DLG4 binds and clusters the kainate subgroup of glutamate receptors via two proline-rich sequences in their C-terminal tail. It also binds AKAP79/150 (A-kinase anchoring protein). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 23/58 (39%), Positives = 39/58 (67%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355
           GTS +AI  +  +GKIC+L++  Q +K LR ++L P  +F+ PP  ++L+++  RRG 
Sbjct: 80  GTSKEAIEQIAESGKICILDVDIQGVKQLRKAELSPISVFIKPPSLKVLQRRLKRRGT 137

Length = 183

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
            G  V A +DY  +D       EL  SF+KGDI+ V+ + D  WW+      +
Sbjct: 1   EGPQVRALYDYTAQDPD-----EL--SFKKGDIITVLEKSDDGWWKGRLGRGK 46

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 100 RSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRA 158
           R N ++PIV+ GP  +G+  L   LM E    F  ++ HT+R  ++ E DG  YHF  R+
Sbjct: 131 RGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERS 190

Query: 159 QFELDILARKFIEHGEYEKSYYG 181
             E +I   KF+E      + YG
Sbjct: 191 VMEKEIKDGKFLEFASVHGNLYG 213

Length = 398

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           +    FDY   D          +S +KGD++ V+ +DD  WW+  R G  
Sbjct: 1   YGRVIFDYVATD-------PNELSLKKGDVVKVLDKDDNGWWEGERGGRR 43

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 7/48 (14%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
           +  A +DY+ +DD      EL  SF+KGDI+ V+ +DD  WW+    G
Sbjct: 1   YARALYDYEAQDD-----DEL--SFKKGDIITVLEKDDDGWWEGELNG 41

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1  GATIRNEGDA---VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G ++    D    V+V  VV G  A + GL   GD ILE+NG  + G +     D+L
Sbjct: 15 GFSLVGGKDEGGGVVVSSVVPGSPAAKAGL-RVGDVILEVNGTSVEGLTHLEAVDLL 70

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|212965 cd12032, SH3_DLG2, Src Homology 3 domain of Disks Large homolog 2

 Score = 49.7 bits (118), Expect = 3e-08
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
           ++V A FDY+   D  +P +  G+SF+ GDILHVI+  D  WWQA R
Sbjct: 6   LYVRAMFDYEKSKDSGLPSQ--GLSFRYGDILHVINASDDEWWQARR 50

DLG2, also called postsynaptic density-93 (PSD93) or Channel-associated protein of synapse-110 (chapsyn 110), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. The DLG2 delta isoform binds inwardly rectifying potassium Kir2 channels, which determine resting membrane potential in neurons. It regulates the spatial and temporal distribution of Kir2 channels within neuronal membranes. DLG2 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG2 contains three PDZ domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 74

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          G  ++ +   +++  V+ G  A + G+   GD I+ I+G  + G S+  V  +L G  G 
Sbjct: 5  GLELKYDDGGLVITSVLPGSPAAKAGI-KAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGT 63

Query: 61 EMTM 64
          ++ +
Sbjct: 64 KVRL 67

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|212962 cd12029, SH3_DLG3, Src Homology 3 domain of Disks Large homolog 3

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           ++V A FDYD   D  +P +  G+SF  GDILHVI+  D  WWQA
Sbjct: 3   LYVRALFDYDRTRDSCLPSQ--GLSFSYGDILHVINASDDEWWQA 45

DLG3, also called synapse-associated protein 102 (SAP102), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. Mutations in DLG3 cause midgestational embryonic lethality in mice and may be associated with nonsyndromic X-linked mental retardation in humans. It interacts with the NEDD4 (neural precursor cell-expressed developmentally downregulated 4) family of ubiquitin ligases and promotes apical tight junction formation. DLG3 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG3 contains three PDZ domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 67

>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)

Query: 296 LAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIR-RG 354
           L GTS++A+  V ++GK C+L++  Q  + +R+S L+   IF+ PP  E L +KR+R RG
Sbjct: 211 LYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEEL-EKRLRARG 269

Length = 398

>gnl|CDD|212964 cd12031, SH3_DLG1, Src Homology 3 domain of Disks Large homolog 1

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 5/55 (9%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR---EGEED 293
           ++V A FDYD   D  +P +  G++F+ GDILHV++  D  WWQA +   +GE +
Sbjct: 3   LYVRALFDYDKTKDSGLPSQ--GLNFKFGDILHVVNASDDEWWQARQVTADGESE 55

DLG1, also called synapse-associated protein 97 (SAP97), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. DLG1 plays roles in regulating cell polarity, proliferation, migration, and cycle progression. It interacts with AMPA-type glutamate receptors and is critical in their maturation and delivery to synapses. It also interacts with PKCalpha and promotes wound healing. DLG1 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG1 contains three PDZ domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 67

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 7/48 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           V A FD+DP++D      ELG  F++GD + V+   DPNWW+    G+
Sbjct: 2   VQALFDFDPQED-----GELG--FRRGDFIEVMDNSDPNWWKGACHGQ 42

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 7/42 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           VIA F Y  +++      EL  SFQKGDI++V+S+DDP+WW+
Sbjct: 2   VIALFPYTAQNE-----DEL--SFQKGDIINVLSKDDPDWWR 36

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 1  GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G +IR   +  + V  V  G  A+R GL   GD IL +NG +++  ++  V ++L    G
Sbjct: 4  GFSIRGGTEGGVVVLSVEPGSPAERAGL-QAGDVILAVNGTDVKNLTLEDVAELLKKEVG 62

Query: 60 QEMTM 64
          +++T+
Sbjct: 63 EKVTL 67

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 7/41 (17%)

Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           A +DY+ +        EL  SF++GD+L++  + DPNWW+A
Sbjct: 4   ALYDYEAQHP-----DEL--SFEEGDLLYISDKSDPNWWKA 37

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           V A +D+  ED          +SF++GDI+ V+   DPNWW+
Sbjct: 2   VQAQYDFSAEDPS-------QLSFRRGDIIEVLDCPDPNWWR 36

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 1  GATIRNEGDA---VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          G ++    D    + V  V+ GG A+  GL  EGD IL ING ++   S
Sbjct: 13 GFSLVGGSDGDPGIFVSEVLPGGAAEAGGL-QEGDRILSINGQDLENLS 60

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
            V+A +D+ P+           +SF+ GDI++V+++D   WW
Sbjct: 1   VVVALYDFTPKSKNQ-------LSFKAGDIIYVLNKDPSGWW 35

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 42.6 bits (101), Expect = 6e-06
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 7/42 (16%)

Query: 245 IAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           +A +DY   +       EL  SF+KGDI+ V+ + D  WW+ 
Sbjct: 1   VALYDYTAREPD-----EL--SFKKGDIIIVLEKSDDGWWKG 35

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 42.6 bits (101), Expect = 6e-06
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 11/46 (23%)

Query: 243 HVIAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
             +A +DY+   +DD+         SF+KGD L ++   D +WW A
Sbjct: 1   IYVALYDYEARTDDDL---------SFKKGDRLQILDDSDGDWWLA 37

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212963 cd12030, SH3_DLG4, Src Homology 3 domain of Disks Large homolog 4

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR-----EGEE 292
           G ++ A FDYD   D     + L  SF+ GD+LHVI   D  WWQA R     E EE
Sbjct: 1   GFYIRALFDYDKTKDCGFLSQAL--SFRFGDVLHVIDAGDEEWWQARRVHSDSETEE 55

DLG4, also called postsynaptic density-95 (PSD95) or synapse-associated protein 90 (SAP90), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. It is responsible for the membrane clustering and retention of many transporters and receptors such as potassium channels and PMCA4b, a P-type ion transport ATPase, among others. DLG4 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG4 contains three PDZ domains. The SH3 domain of DLG4 binds and clusters the kainate subgroup of glutamate receptors via two proline-rich sequences in their C-terminal tail. It also binds AKAP79/150 (A-kinase anchoring protein). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 66

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 7/42 (16%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
            V A +D++P++       EL   F++GDI+ V+   DP+WW
Sbjct: 1   RVQALYDFNPQEP-----GELE--FRRGDIITVLDSSDPDWW 35

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           V A FD+   DD  +P       F+KG+IL VI + +  WW A
Sbjct: 3   VRALFDFPGNDDEDLP-------FKKGEILTVIRKPEEQWWNA 38

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase

 Score = 42.5 bits (101), Expect = 8e-05
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
           GT    +   + AGK  +L +  Q  + ++        IF+ PP  E L+++  +RG
Sbjct: 77  GTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRG 133

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 179

>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 116 GRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEY 175
           G+  + Q L+E+   F  +I  T+R  + G+ +G+ Y F+T  +F+  I   +F+E  E 
Sbjct: 16  GKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEV 75

Query: 176 EKSYYGLRTK--LDKLQAG 192
             +YYG       D  + G
Sbjct: 76  HDNYYGTPKAFIEDAFKEG 94

Length = 186

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 15/57 (26%)

Query: 241 GMHVIAHFDY---DPEDDMYIPCKELGMSFQKGDILHVI-SQDDPNWWQAYRE-GEE 292
           G   IA +++     ED          + F+KGDIL ++    DPNW++A  + G E
Sbjct: 1   GTECIAKYNFNGASEED----------LPFKKGDILTIVAVTKDPNWYKAKNKDGRE 47

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 1   GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
           G  ++  +   V V   + G  A + G+   GD I++I+G  + G S+     ++ G  G
Sbjct: 103 GIELQMEDIGGVKVVSPIDGSPAAKAGI-KPGDVIIKIDGKSVGGVSLDEAVKLIRGKPG 161

Query: 60  QEMTM 64
            ++T+
Sbjct: 162 TKVTL 166

Length = 406

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 7/48 (14%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
            VIA +DY           E  +SF KG +++V+++DDP+WWQ    G
Sbjct: 2   QVIAMYDY-------TANNEDELSFSKGQLINVLNKDDPDWWQGEING 42

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 7/49 (14%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
            VI  +DY  ++D  +        F KG I++V++++DP+WW+    G+
Sbjct: 2   QVIGMYDYTAQNDDELA-------FSKGQIINVLNKEDPDWWKGELNGQ 43

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEI 42
           ++G VV G  A + GL   GD IL ING +I
Sbjct: 14 PVIGEVVPGSPAAKAGL-KAGDRILAINGQKI 44

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP 341
           GTS  A+   +  GKI +L +  Q  + ++ S      IF+ PP
Sbjct: 77  GTSKAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP 120

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 10/46 (21%)

Query: 247 HFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           H   DPE        ELG  F+ GD++ V+   D +WW      EE
Sbjct: 8   HVTMDPE--------ELG--FKAGDVIEVLDMSDKDWWWGSIRDEE 43

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 7/40 (17%)

Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           A +D++PE++      ELG  F++GDI+ + +Q D NW++
Sbjct: 5   ALYDFEPENE-----GELG--FKEGDIITLTNQIDENWYE 37

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 15/29 (51%), Positives = 24/29 (82%), Gaps = 1/29 (3%)

Query: 265 MSFQKGDILHVIS-QDDPNWWQAYREGEE 292
           +SF+KG IL V++ +DDPNW++A  +G+E
Sbjct: 16  LSFKKGSILKVLNMEDDPNWYKAELDGKE 44

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 7/47 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
           V+A +DY  + D      EL  SFQ+GDI++V  ++D  W++    G
Sbjct: 2   VVALYDYTADKDD-----EL--SFQEGDIIYVTKKNDDGWYEGVLNG 41

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 265 MSFQKGDILHVISQDDPNWWQAYREGE 291
           ++F +G+I+ V  ++D  WW+ + EG+
Sbjct: 16  LTFSEGEIIVVTGEEDDEWWEGHIEGD 42

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 7/49 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           V A +D++  +D      EL  +F+ G+I+ V+   DPNWW+      E
Sbjct: 3   VRALYDFEAAED-----NEL--TFKAGEIITVLDDSDPNWWKGSNHRGE 44

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
           V A F+++  ++      EL  SF KGDI+ V    +  WW+    G
Sbjct: 2   VRAKFNFEGTNE-----DEL--SFDKGDIITVTQVVEGGWWEGTLNG 41

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 265 MSFQKGDILHVISQDDPNWWQAYREGE 291
           +SF KGD++HV   ++  WW+    G 
Sbjct: 16  LSFSKGDVIHVTRVEEGGWWEGTHNGR 42

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
KOG0609|consensus	542		100.0
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.96
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.96
PRK14737	186	gmk guanylate kinase; Provisional	99.96
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.95
PLN02772	398	guanylate kinase	99.94
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.93
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.92
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	99.92
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	99.91
PLN02840	421	tRNA dimethylallyltransferase	99.9
PRK14738	206	gmk guanylate kinase; Provisional	99.9
KOG3580|consensus	1027		99.87
PLN02748	468	tRNA dimethylallyltransferase	99.86
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.84
KOG0707|consensus	231		99.83
KOG0708|consensus	359		99.81
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.8
PRK00300	205	gmk guanylate kinase; Provisional	99.77
PF01715	253	IPPT: IPP transferase; InterPro: IPR002627 tRNA is	99.72
PLN02165	334	adenylate isopentenyltransferase	99.52
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.43
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.42
KOG1384|consensus	348		99.24
COG3709	192	Uncharacterized component of phosphonate metabolis	99.19
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.03
PRK08356	195	hypothetical protein; Provisional	99.0
KOG3550|consensus	207		98.96
KOG3580|consensus	1027		98.74
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.63
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.47
KOG0609|consensus	542		98.38
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.31
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.26
KOG3553|consensus	124		98.22
KOG3571|consensus	626		98.2
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.17
KOG3209|consensus	984		98.12
KOG3209|consensus	984		98.05
KOG3549|consensus	505		97.98
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.97
KOG3551|consensus	506		97.94
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.84
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	97.83
PRK11186	667	carboxy-terminal protease; Provisional	97.72
KOG3606|consensus	358		97.69
PHA02530	300	pseT polynucleotide kinase; Provisional	97.69
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	97.69
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.65
KOG1892|consensus	1629		97.64
PRK06762	166	hypothetical protein; Provisional	97.59
PLN00049	389	carboxyl-terminal processing protease; Provisional	97.56
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	97.53
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.37
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.36
KOG3651|consensus	429		97.36
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.23
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.2
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.19
PRK00698	205	tmk thymidylate kinase; Validated	97.17
KOG3605|consensus	829		97.17
PRK00098	298	GTPase RsgA; Reviewed	97.13
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.1
PLN02200	234	adenylate kinase family protein	97.06
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.05
PRK14531	183	adenylate kinase; Provisional	96.99
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.99
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.97
PRK14530	215	adenylate kinase; Provisional	96.96
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.91
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.9
KOG3938|consensus	334		96.87
PRK14527	191	adenylate kinase; Provisional	96.87
PRK14529	223	adenylate kinase; Provisional	96.79
KOG3552|consensus	1298		96.78
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.77
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.75
PRK14532	188	adenylate kinase; Provisional	96.73
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	96.71
PRK12339	197	2-phosphoglycerate kinase; Provisional	96.64
KOG3079|consensus	195		96.6
PRK07261	171	topology modulation protein; Provisional	96.59
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.55
KOG3542|consensus	1283		96.53
PRK05057	172	aroK shikimate kinase I; Reviewed	96.53
PRK00279	215	adk adenylate kinase; Reviewed	96.47
PRK06761	282	hypothetical protein; Provisional	96.46
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.42
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	96.35
PRK13808	333	adenylate kinase; Provisional	96.32
PRK02496	184	adk adenylate kinase; Provisional	96.31
PRK08118	167	topology modulation protein; Reviewed	96.3
PTZ00088	229	adenylate kinase 1; Provisional	96.26
KOG3129|consensus	231		96.16
PLN02674	244	adenylate kinase	96.09
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	96.06
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.06
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.06
PRK10139	455	serine endoprotease; Provisional	96.05
PRK13948	182	shikimate kinase; Provisional	96.05
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.98
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	95.95
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	95.94
PRK00625	173	shikimate kinase; Provisional	95.93
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.93
PRK10942	473	serine endoprotease; Provisional	95.9
PRK13946	184	shikimate kinase; Provisional	95.88
KOG3605|consensus	829		95.86
PRK14526	211	adenylate kinase; Provisional	95.81
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	95.8
PRK10898	353	serine endoprotease; Provisional	95.74
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	95.7
PLN02924	220	thymidylate kinase	95.67
PRK10139	455	serine endoprotease; Provisional	95.66
PLN02459	261	probable adenylate kinase	95.64
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.64
PRK14732	196	coaE dephospho-CoA kinase; Provisional	95.64
PRK10779	449	zinc metallopeptidase RseP; Provisional	95.64
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	95.62
PRK08233	182	hypothetical protein; Provisional	95.62
smart00382	148	AAA ATPases associated with a variety of cellular	95.62
PRK10942	473	serine endoprotease; Provisional	95.61
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.53
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	95.45
TIGR00235	207	udk uridine kinase. Model contains a number of lon	95.45
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	95.43
PRK00131	175	aroK shikimate kinase; Reviewed	95.42
COG3975	558	Predicted protease with the C-terminal PDZ domain	95.41
PRK06217	183	hypothetical protein; Validated	95.33
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	95.32
PRK06547	172	hypothetical protein; Provisional	95.29
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.26
PLN02199	303	shikimate kinase	95.18
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.16
PF00004	132	AAA: ATPase family associated with various cellula	95.13
PRK03839	180	putative kinase; Provisional	95.09
PRK05480	209	uridine/cytidine kinase; Provisional	95.04
KOG3354|consensus	191		95.01
PRK06696	223	uridine kinase; Validated	95.0
PRK10779	449	zinc metallopeptidase RseP; Provisional	94.98
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	94.96
PF13555	62	AAA_29: P-loop containing region of AAA domain	94.94
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.9
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	94.9
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	94.9
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	94.89
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	94.84
PRK05541	176	adenylylsulfate kinase; Provisional	94.8
PHA00729	226	NTP-binding motif containing protein	94.79
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	94.78
PTZ00301	210	uridine kinase; Provisional	94.76
PF05729	166	NACHT: NACHT domain	94.73
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	94.65
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	94.64
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	94.64
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.6
PRK14734	200	coaE dephospho-CoA kinase; Provisional	94.53
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.53
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	94.51
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	94.51
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	94.48
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	94.47
COG1162	301	Predicted GTPases [General function prediction onl	94.45
COG2256	436	MGS1 ATPase related to the helicase subunit of the	94.43
PRK13975	196	thymidylate kinase; Provisional	94.38
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	94.35
PF13173	128	AAA_14: AAA domain	94.34
PRK13947	171	shikimate kinase; Provisional	94.17
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	94.12
PRK04040	188	adenylate kinase; Provisional	94.1
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	94.08
PRK15453	290	phosphoribulokinase; Provisional	94.02
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	93.97
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	93.91
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	93.88
PRK00889	175	adenylylsulfate kinase; Provisional	93.88
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	93.84
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	93.84
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	93.84
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	93.82
KOG0745|consensus	564		93.82
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	93.79
PRK14528	186	adenylate kinase; Provisional	93.77
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.74
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	93.69
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	93.68
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	93.66
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	93.63
PRK03731	171	aroL shikimate kinase II; Reviewed	93.62
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	93.62
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	93.62
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	93.6
PF09439	181	SRPRB: Signal recognition particle receptor beta s	93.59
PRK09825	176	idnK D-gluconate kinase; Provisional	93.58
PRK06620	214	hypothetical protein; Validated	93.54
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	93.54
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	93.53
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	93.52
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	93.51
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	93.47
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	93.47
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	93.46
KOG1738|consensus	638		93.46
PRK12289	352	GTPase RsgA; Reviewed	93.46
PRK13949	169	shikimate kinase; Provisional	93.45
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	93.44
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	93.42
PRK03846	198	adenylylsulfate kinase; Provisional	93.39
PRK04182	180	cytidylate kinase; Provisional	93.39
COG1127	263	Ttg2A ABC-type transport system involved in resist	93.39
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	93.38
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	93.37
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	93.34
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	93.33
PF00005	137	ABC_tran: ABC transporter This structure is on hol	93.32
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	93.3
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	93.3
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	93.3
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	93.28
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	93.26
PLN02422	232	dephospho-CoA kinase	93.18
PRK15455	644	PrkA family serine protein kinase; Provisional	93.14
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	93.12
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	93.11
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	93.1
PRK12288	347	GTPase RsgA; Reviewed	93.07
cd01881	176	Obg_like The Obg-like subfamily consists of five w	93.07
KOG1191|consensus	531		93.06
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	93.05
PRK08903	227	DnaA regulatory inactivator Hda; Validated	93.03
PLN02842	505	nucleotide kinase	93.02
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	93.01
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	92.99
PRK06851	367	hypothetical protein; Provisional	92.98
COG3638	258	ABC-type phosphate/phosphonate transport system, A	92.98
KOG3347|consensus	176		92.97
COG4639	168	Predicted kinase [General function prediction only	92.96
PRK07667	193	uridine kinase; Provisional	92.94
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	92.94
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	92.94
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	92.93
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	92.9
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	92.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	92.85
PRK09087	226	hypothetical protein; Validated	92.83
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	92.82
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	92.82
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	92.81
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	92.8
PRK01184	184	hypothetical protein; Provisional	92.79
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	92.78
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	92.78
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	92.77
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	92.76
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	92.69
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	92.68
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	92.66
PRK00089	292	era GTPase Era; Reviewed	92.65
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	92.65
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	92.64
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	92.63
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	92.63
PRK04220	301	2-phosphoglycerate kinase; Provisional	92.62
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	92.61
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	92.6
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	92.58
PRK12338	319	hypothetical protein; Provisional	92.57
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	92.56
cd03269	210	ABC_putative_ATPase This subfamily is involved in	92.51
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	92.5
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	92.5
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	92.5
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	92.5
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	92.5
PF13245	76	AAA_19: Part of AAA domain	92.49
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	92.49
PRK08084	235	DNA replication initiation factor; Provisional	92.48
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	92.47
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	92.47
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	92.46
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	92.43
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	92.41
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	92.4
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	92.39
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	92.39
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	92.32
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	92.31
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	92.29
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	92.27
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	92.27
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	92.26
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	92.23
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	92.21
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	92.2
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	92.19
KOG3532|consensus	1051		92.18
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	92.18
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	92.17
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	92.16
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	92.14
cd01896	233	DRG The developmentally regulated GTP-binding prot	92.13
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	92.11
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	92.1
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	92.1
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	92.1
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	92.06
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	92.05
PRK06893	229	DNA replication initiation factor; Validated	92.05
cd03246	173	ABCC_Protease_Secretion This family represents the	91.99
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	91.98
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	91.97
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	91.97
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	91.95
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	91.93
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	91.93
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	91.92
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	91.91
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	91.89
PRK08099	399	bifunctional DNA-binding transcriptional repressor	91.89
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	91.89
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	91.87
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	91.86
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	91.85
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	91.84
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	91.83
PRK10908	222	cell division protein FtsE; Provisional	91.83
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	91.81
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	91.81
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	91.8
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	91.78
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	91.76
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	91.76
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	91.76
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	91.75
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	91.73
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	91.71
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	91.71
KOG0606|consensus	1205		91.7
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	91.7
PRK05439	311	pantothenate kinase; Provisional	91.69
PRK10416	318	signal recognition particle-docking protein FtsY;	91.69
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	91.68
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	91.65
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	91.64
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	91.64
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	91.64
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	91.63
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	91.63
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	91.62
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	91.61
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	91.6
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	91.6
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	91.6
TIGR00064	272	ftsY signal recognition particle-docking protein F	91.59
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	91.59
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	91.58
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	91.57
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	91.57
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	91.54
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	91.54
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	91.54
COG2884	223	FtsE Predicted ATPase involved in cell division [C	91.52
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	91.52
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	91.51
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	91.51
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	91.51
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	91.51
CHL00181	287	cbbX CbbX; Provisional	91.51
KOG0744|consensus	423		91.5
cd03234	226	ABCG_White The White subfamily represents ABC tran	91.49
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	91.48
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	91.48
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	91.46
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	91.46
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	91.46
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	91.45
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	91.45
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	91.44
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	91.44
cd03215	182	ABC_Carb_Monos_II This family represents domain II	91.43
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	91.43
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	91.41
PHA02244	383	ATPase-like protein	91.41
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	91.41
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	91.4
PRK13851	344	type IV secretion system protein VirB11; Provision	91.37
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	91.37
cd03216	163	ABC_Carb_Monos_I This family represents the domain	91.36
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	91.35
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	91.34
PTZ00451	244	dephospho-CoA kinase; Provisional	91.34
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	91.33
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	91.31
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	91.28
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	91.27
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	91.27
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	91.27
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	91.25
PRK08727	233	hypothetical protein; Validated	91.25
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	91.24
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	91.22
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	91.2
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	91.17
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	91.16
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	91.14
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	91.13
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	91.11
PRK14730	195	coaE dephospho-CoA kinase; Provisional	91.11
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	91.1
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	91.1
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	91.08
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	91.08
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	91.07
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	91.06
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	91.03
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	91.03
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	91.03
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	91.02
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	91.01
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	91.01
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	91.01
KOG0058|consensus	716		91.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	90.99
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	90.97
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	90.96
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	90.96
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	90.95
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	90.93
KOG0731|consensus	774		90.92
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	90.91
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	90.91
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	90.9
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	90.89
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	90.88
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	90.86
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	90.85
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	90.85
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	90.83
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	90.83
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	90.82
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	90.82
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	90.82
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	90.82
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	90.82
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	90.8
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	90.8
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	90.79
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	90.79
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	90.78
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	90.78
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	90.76
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	90.75
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	90.75
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	90.73
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	90.73
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	90.72
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	90.72
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	90.72
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	90.72
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	90.72
cd03116	159	MobB Molybdenum is an essential trace element in t	90.71
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	90.71
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	90.71
PRK05642	234	DNA replication initiation factor; Validated	90.7
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	90.69
COG4525	259	TauB ABC-type taurine transport system, ATPase com	90.69
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	90.69
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	90.67
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	90.66
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	90.65
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	90.62
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	90.6
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	90.6
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	90.6
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	90.59
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	90.59
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	90.59
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	90.58
KOG0056|consensus	790		90.58
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	90.57
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	90.57
PRK09183	259	transposase/IS protein; Provisional	90.57
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	90.57
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	90.56
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	90.56
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	90.53
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	90.53
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	90.51
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	90.51
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	90.51
PLN02348	395	phosphoribulokinase	90.5
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	90.5
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	90.47
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	90.47
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	90.47
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	90.46
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	90.45
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	90.44
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	90.44
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	90.42

>KOG0609|consensus

Probab=100.00  E-value=3.5e-43  Score=347.14  Aligned_cols=246  Identities=47%  Similarity=0.825  Sum_probs=226.6

Q ss_pred             CcEEEEeCC-eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe---------------
Q psy16959          1 GATIRNEGD-AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM---------------   64 (366)
Q Consensus         1 G~~i~~~~~-gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~---------------   64 (366)
                      |++++.+.+ .++|+++++||.++++|.|+.||.|++|||+++.+...+++..+|+.+.|+++++               
T Consensus       137 G~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~~~~~~~~~~~  216 (542)
T KOG0609|consen  137 GATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSYRPPPQQQVVF  216 (542)
T ss_pred             ceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEcccccCCCceeeee
Confidence            789998655 6999999999999999999999999999999999999999999999999999986               


Q ss_pred             ------------------------------------eccCcc---------------cccccccC---------------
Q psy16959         65 ------------------------------------GREAWK---------------TSHAFRHT---------------   78 (366)
Q Consensus        65 ------------------------------------~~~~w~---------------ps~~~~~~---------------   78 (366)
                                                          |.+|||               ||+.++++               
T Consensus       217 vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~~~~  296 (542)
T KOG0609|consen  217 VRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKEPEK  296 (542)
T ss_pred             ehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccCCcC
Confidence                                                899999               66666554               


Q ss_pred             --------------------ccCccCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHh-ccCCcceeeec
Q psy16959         79 --------------------EHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLME-DSDRFAAAIPH  137 (366)
Q Consensus        79 --------------------~~~~~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~-~~~~~~~~~~~  137 (366)
                                          .++.++..+.++||+|+++.|  ..+|++||+||.|+|...|..+|.. +|..|+..+||
T Consensus       297 ~~c~~l~kkkk~~~~~y~~~~~~~~d~~~~~tYEEV~~~~~--~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPh  374 (542)
T KOG0609|consen  297 TRCQRLSKKKKKKKSKYLGKHSAVFDQPELLTYEEVVRYPP--FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPH  374 (542)
T ss_pred             chhcccchhhhhhhhhhhhhcchhhhccccccHHHHhhhcc--cccceEEEECCcccchHHHHHHHHhhCccccccCCCC
Confidence                                134457788999999999954  7889999999999999999999986 69999999999


Q ss_pred             cCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCcc
Q psy16959        138 TSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPEL  217 (366)
Q Consensus       138 tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      |||+||++|.+|++|||||.++|+..+.+|.|+||++|.++.||                                    
T Consensus       375 TtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYG------------------------------------  418 (542)
T KOG0609|consen  375 TTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYG------------------------------------  418 (542)
T ss_pred             cCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhcccc------------------------------------
Confidence            99999999999999999999999999999999999999999999                                    


Q ss_pred             ccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCccccc
Q psy16959        218 GFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLA  297 (366)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (366)
                                                                                                      
T Consensus       419 --------------------------------------------------------------------------------  418 (542)
T KOG0609|consen  419 --------------------------------------------------------------------------------  418 (542)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCCC------CCchhhhhh
Q psy16959        298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDN------FKTGTAQAQ  365 (366)
Q Consensus       298 ~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~------~~~~~~~~~  365 (366)
                       |+.++|+.+++.||+|+||+.|++++.++.++|.|+|||+.|++.+.+++.+..-...      |+++.+|++
T Consensus       419 -Ts~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~i  491 (542)
T KOG0609|consen  419 -TSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQEI  491 (542)
T ss_pred             -chHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCHHHHHHH
Confidence             8999999999999999999999999999999999999999999999999988877655      888887764

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.96  E-value=2.7e-29  Score=225.16  Aligned_cols=135  Identities=47%  Similarity=0.926  Sum_probs=125.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL  182 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~  182 (366)
                      +|||||+||+||||++|+.+|++. |..|..++++|||+||++|.+|++|||||.++|+++++.|.|++++++.|++|| 
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG-   80 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG-   80 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh-
Confidence            689999999999999999999875 778999999999999999999999999999999999999999999999999999 


Q ss_pred             hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959        183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE  262 (366)
Q Consensus       183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~  262 (366)
                                                                                                      
T Consensus        81 --------------------------------------------------------------------------------   80 (183)
T PF00625_consen   81 --------------------------------------------------------------------------------   80 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCC
Q psy16959        263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP  342 (366)
Q Consensus       263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~  342 (366)
                                                          ++.+++++++..|++|+|+++|.++..++...++|++||+.|++
T Consensus        81 ------------------------------------t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s  124 (183)
T PF00625_consen   81 ------------------------------------TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPS  124 (183)
T ss_dssp             ------------------------------------EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESS
T ss_pred             ------------------------------------hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccc
Confidence                                                78999999999999999999999999999889999999999999


Q ss_pred             HHHHHHHHHhcCC
Q psy16959        343 FELLKQKRIRRGD  355 (366)
Q Consensus       343 ~~~l~~~~~~r~~  355 (366)
                      .+.|++|+.+|++
T Consensus       125 ~~~l~~~l~~r~~  137 (183)
T PF00625_consen  125 PEVLKRRLRRRGD  137 (183)
T ss_dssp             HHHHHHHHHTTTH
T ss_pred             hHHHHHHHhcccc
Confidence            9999999988875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.96  E-value=8.2e-29  Score=218.42  Aligned_cols=139  Identities=32%  Similarity=0.573  Sum_probs=128.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL  182 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~  182 (366)
                      ++.+++|+||||+||+||.+.|.+.. .+.+++++|||+||+||++|++|||+|.+||+++++.++|+||++++|++|| 
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG-   80 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG-   80 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc-
Confidence            46789999999999999999999888 9999999999999999999999999999999999999999999999999999 


Q ss_pred             hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959        183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE  262 (366)
Q Consensus       183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~  262 (366)
                                                                                                      
T Consensus        81 --------------------------------------------------------------------------------   80 (191)
T COG0194          81 --------------------------------------------------------------------------------   80 (191)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCC
Q psy16959        263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP  342 (366)
Q Consensus       263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~  342 (366)
                                                          ++...+...+..|+.++|+++-+++...+..--....||+.|||
T Consensus        81 ------------------------------------T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs  124 (191)
T COG0194          81 ------------------------------------TSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPS  124 (191)
T ss_pred             ------------------------------------CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCC
Confidence                                                88999999999999999999999998887552255779999999


Q ss_pred             HHHHHHHHHhcCCCCCc
Q psy16959        343 FELLKQKRIRRGDNFKT  359 (366)
Q Consensus       343 ~~~l~~~~~~r~~~~~~  359 (366)
                      .++|++|+.+|+..-.+
T Consensus       125 ~eeL~~RL~~Rgtds~e  141 (191)
T COG0194         125 LEELERRLKGRGTDSEE  141 (191)
T ss_pred             HHHHHHHHHccCCCCHH
Confidence            99999999999986544

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.96  E-value=1.7e-28  Score=220.85  Aligned_cols=143  Identities=24%  Similarity=0.477  Sum_probs=128.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL  182 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~  182 (366)
                      .+++|+|+||+||||++|+++|++..+.+.++++||||+||++|.+|++|||||.++|+++++.|.|+||++++|++|| 
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG-   81 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG-   81 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec-
Confidence            4678999999999999999999987556778899999999999999999999999999999999999999999999999 


Q ss_pred             hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959        183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE  262 (366)
Q Consensus       183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~  262 (366)
                                                                                                      
T Consensus        82 --------------------------------------------------------------------------------   81 (186)
T PRK14737         82 --------------------------------------------------------------------------------   81 (186)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCc-EEEEEeCC
Q psy16959        263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKP-FVIFVAPP  341 (366)
Q Consensus       263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p-~vi~~~~~  341 (366)
                                                          |+.+++++++++|++|++++++.++..++..-..+ ++||+.|+
T Consensus        82 ------------------------------------t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pp  125 (186)
T PRK14737         82 ------------------------------------TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPP  125 (186)
T ss_pred             ------------------------------------CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECC
Confidence                                                89999999999999999999999998887541122 89999999


Q ss_pred             CHHHHHHHHHhcCCCCCchhhh
Q psy16959        342 PFELLKQKRIRRGDNFKTGTAQ  363 (366)
Q Consensus       342 ~~~~l~~~~~~r~~~~~~~~~~  363 (366)
                      |.+.+.+|+.+|++. ....++
T Consensus       126 s~e~l~~RL~~R~~~-s~e~i~  146 (186)
T PRK14737        126 SEEEWEERLIHRGTD-SEESIE  146 (186)
T ss_pred             CHHHHHHHHHhcCCC-CHHHHH
Confidence            999999999999875 333343

>smart00072 GuKc Guanylate kinase homologues

Probab=99.95  E-value=8.2e-28  Score=215.86  Aligned_cols=137  Identities=46%  Similarity=0.858  Sum_probs=131.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL  182 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~  182 (366)
                      +|+|+|+||+||||++|+.+|++. |+.|..++++|||+||++|.+|++|+|+|.++|+++++.|.|+++++++|++|| 
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG-   80 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG-   80 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc-
Confidence            589999999999999999999986 668999999999999999999999999999999999999999999999999999 


Q ss_pred             hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959        183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE  262 (366)
Q Consensus       183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~  262 (366)
                                                                                                      
T Consensus        81 --------------------------------------------------------------------------------   80 (184)
T smart00072       81 --------------------------------------------------------------------------------   80 (184)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCC
Q psy16959        263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP  342 (366)
Q Consensus       263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~  342 (366)
                                                          ++.++++.+++++++|+++++|.++..++.....|++||+.|++
T Consensus        81 ------------------------------------t~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s  124 (184)
T smart00072       81 ------------------------------------TSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPS  124 (184)
T ss_pred             ------------------------------------cCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcC
Confidence                                                89999999999999999999999999999888899999999999


Q ss_pred             HHHHHHHHHhcCCCC
Q psy16959        343 FELLKQKRIRRGDNF  357 (366)
Q Consensus       343 ~~~l~~~~~~r~~~~  357 (366)
                      .+.|++|+..|++..
T Consensus       125 ~~~l~~rl~~R~~~~  139 (184)
T smart00072      125 SEELERRLRGRGTET  139 (184)
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999999999863

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PLN02772 guanylate kinase

Probab=99.94  E-value=4.3e-26  Score=223.49  Aligned_cols=149  Identities=33%  Similarity=0.620  Sum_probs=137.2

Q ss_pred             ceeeecccc-CCC-CCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhc
Q psy16959         91 YEEVSLYYP-RSN-EKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILAR  167 (366)
Q Consensus        91 YE~V~~~~~-~~~-~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g  167 (366)
                      =|+|..+.+ .+. ..++++|+|||||||++|+++|+++ +..|.++++||||+||++|.+|++|||++.++|+++++.|
T Consensus       120 ~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g  199 (398)
T PLN02772        120 GTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDG  199 (398)
T ss_pred             cceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhC
Confidence            467887764 233 6789999999999999999999876 6679999999999999999999999999999999999999


Q ss_pred             ceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeee
Q psy16959        168 KFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAH  247 (366)
Q Consensus       168 ~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl  247 (366)
                      .|+||++++|++||                                                                  
T Consensus       200 ~FlE~~e~~Gn~YG------------------------------------------------------------------  213 (398)
T PLN02772        200 KFLEFASVHGNLYG------------------------------------------------------------------  213 (398)
T ss_pred             ccceeeeecCcccc------------------------------------------------------------------
Confidence            99999999999999                                                                  


Q ss_pred             cCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccc
Q psy16959        248 FDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILR  327 (366)
Q Consensus       248 ~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~  327 (366)
                                                                         |+.++++.++++|++|+|++++++++.++
T Consensus       214 ---------------------------------------------------Tsk~~V~~vl~~Gk~vILdLD~qGar~Lr  242 (398)
T PLN02772        214 ---------------------------------------------------TSIEAVEVVTDSGKRCILDIDVQGARSVR  242 (398)
T ss_pred             ---------------------------------------------------ccHHHHHHHHHhCCcEEEeCCHHHHHHHH
Confidence                                                               89999999999999999999999998888


Q ss_pred             cCCCCcEEEEEeCCCHHHHHHHHHhcCCC
Q psy16959        328 SSDLKPFVIFVAPPPFELLKQKRIRRGDN  356 (366)
Q Consensus       328 ~~~~~p~vi~~~~~~~~~l~~~~~~r~~~  356 (366)
                      ...+.+++||+.|++.++|++|+..|++.
T Consensus       243 ~~~l~~v~IFI~PPSlEeLe~RL~~RGte  271 (398)
T PLN02772        243 ASSLEAIFIFICPPSMEELEKRLRARGTE  271 (398)
T ss_pred             HhcCCeEEEEEeCCCHHHHHHHHHhcCCC
Confidence            66678999999999999999999999885

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=99.93  E-value=6.2e-28  Score=230.85  Aligned_cols=195  Identities=11%  Similarity=0.060  Sum_probs=152.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeecc---------CCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEE
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHT---------SRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGE  174 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~t---------Tr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~  174 (366)
                      +++|+|+||||||||.|+..|++. +...++++..         |++|+..|..+++||+++..++.+.++.+.|.+.+ 
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a-   81 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEA-   81 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHH-
Confidence            458999999999999999999988 4444444433         99999999999999999999999999999998887 


Q ss_pred             EecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---CC
Q psy16959        175 YEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YD  251 (366)
Q Consensus       175 ~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~  251 (366)
                             ...+.++.++|+.|+                                       +|||||||++|++.   ..
T Consensus        82 -------~~~i~~i~~~gk~Pi---------------------------------------lvGGTglYi~all~gl~~~  115 (300)
T PRK14729         82 -------LKIIKELRQQKKIPI---------------------------------------FVGGSAFYFKHLKYGLPST  115 (300)
T ss_pred             -------HHHHHHHHHCCCCEE---------------------------------------EEeCchHHHHHHHcCCCCC
Confidence                   777888889999999                                       99999999999954   34


Q ss_pred             CCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhccccCC
Q psy16959        252 PEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSD  330 (366)
Q Consensus       252 p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~  330 (366)
                      |+.+..+|.+           +.......+..++..++...|| +++.++++|.+|++||+|++.+++.|.+........
T Consensus       116 p~~~~~~r~~-----------~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~Ri~RALEv~~~tG~~~s~~~~~~~~  184 (300)
T PRK14729        116 PPVSSKIRIY-----------VNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYRIKRSLEVYYQTGIPISQFLKKQNM  184 (300)
T ss_pred             CCCCHHHHHH-----------HHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHHHHHHHHHHHHhCCChHhhhhccCC
Confidence            5444444443           2222233445556667777777 888899999999999999999999996542212122


Q ss_pred             CCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959        331 LKPFVIFVAPPPFELLKQKRIRRGDNF  357 (366)
Q Consensus       331 ~~p~vi~~~~~~~~~l~~~~~~r~~~~  357 (366)
                      .+.++++...++++.|++||++|-+.+
T Consensus       185 ~~~~~~i~l~~~r~~L~~rI~~Rv~~M  211 (300)
T PRK14729        185 FKNILAIGLKRPMEEMKSRIISRVNNM  211 (300)
T ss_pred             CCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence            355666666789999999999997653

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=99.92  E-value=6.3e-27  Score=225.40  Aligned_cols=197  Identities=18%  Similarity=0.152  Sum_probs=152.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCC---------cceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEE
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDR---------FAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHG  173 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~---------~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~  173 (366)
                      ++++|+|+||||||||+|+..|++..+.         +...++++|++|+++|++|++|||++..+|.+.++.+.|++++
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a   82 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA   82 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence            4578999999999999999999987654         3445678999999999999999999999999999999999987


Q ss_pred             EEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---C
Q psy16959        174 EYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---Y  250 (366)
Q Consensus       174 ~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~  250 (366)
                              ...+.+++++|+.++                                       ++||+|||++|++.   .
T Consensus        83 --------~~~i~~i~~~gk~pI---------------------------------------lvGGt~~Y~~al~~g~~~  115 (307)
T PRK00091         83 --------LAAIADILARGKLPI---------------------------------------LVGGTGLYIKALLEGLSP  115 (307)
T ss_pred             --------HHHHHHHHhCCCCEE---------------------------------------EECcHHHHHHHhccCCCC
Confidence                    777778889999999                                       89999999999954   3


Q ss_pred             CCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhcc-cc
Q psy16959        251 DPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKIL-RS  328 (366)
Q Consensus       251 ~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l-~~  328 (366)
                      .|+.+..++..           +.......+...+..++...|| +++.++++|.+|++||+|++..++.|.+.... ..
T Consensus       116 ~p~~~~~~r~~-----------l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~Ri~RAlEi~~~tG~~~s~~~~~~~  184 (307)
T PRK00091        116 LPPADPELRAE-----------LEALAAEEGWEALHAELAEIDPEAAARIHPNDPQRIIRALEVYELTGKPLSELQKRGK  184 (307)
T ss_pred             CCCCCHHHHHH-----------HHHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCchhHHHHHHHHHHCCChhhhhhccc
Confidence            44444433333           2222222333344556666677 88889999999999999999999999554211 11


Q ss_pred             CCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959        329 SDLKPFVIFVAPPPFELLKQKRIRRGDNF  357 (366)
Q Consensus       329 ~~~~p~vi~~~~~~~~~l~~~~~~r~~~~  357 (366)
                      ...+..+++...++++.|++||++|-+..
T Consensus       185 ~~~~~~~~~~l~~dr~~L~~rI~~Rv~~M  213 (307)
T PRK00091        185 PPPYRVLIIGLDPDREELYERINQRVDQM  213 (307)
T ss_pred             cCCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence            22345556666689999999999997643

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=99.92  E-value=8.8e-27  Score=221.79  Aligned_cols=194  Identities=18%  Similarity=0.127  Sum_probs=145.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccCCcceee---------eccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEe
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAI---------PHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYE  176 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~---------~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~  176 (366)
                      +|+|+||||||||+|+..|++..+...+++         +.+|++|+++|+++++||+++..++.+.++.+.|...+   
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a---   77 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLA---   77 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHH---
Confidence            579999999999999999998765433444         77899999999999999999999999888888876665   


Q ss_pred             cccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---CCCC
Q psy16959        177 KSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YDPE  253 (366)
Q Consensus       177 g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~p~  253 (366)
                           ...+.+++++|+.||                                       +|||||||++|++.   ..|+
T Consensus        78 -----~~~i~~~~~~g~~pi---------------------------------------~vGGTg~Yi~all~g~~~~p~  113 (287)
T TIGR00174        78 -----LNAIADITARGKIPL---------------------------------------LVGGTGLYLKALLEGLSPTPS  113 (287)
T ss_pred             -----HHHHHHHHhCCCCEE---------------------------------------EEcCcHHHHHHHHcCCCCCCC
Confidence                 566778889999999                                       99999999999954   3444


Q ss_pred             CCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhc-ccc-CC
Q psy16959        254 DDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKI-LRS-SD  330 (366)
Q Consensus       254 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~-l~~-~~  330 (366)
                      .|..++.+          +-..+...+. .+...++...|| ++..++++|.+|++||+|+|..++.|.+... ... ..
T Consensus       114 ~~~~~r~~----------l~~~~~~~g~-~~l~~~L~~~DP~~a~~i~~nd~~Ri~RALEi~~~tG~~~s~~~~~~~~~~  182 (287)
T TIGR00174       114 ADKLIREQ----------LEILAEEQGW-DFLYNELKKVDPVAAAKIHPNDTRRVQRALEVFYATGKPPSELFKEQKIEL  182 (287)
T ss_pred             CCHHHHHH----------HHHHHHHcCH-HHHHHHHHhcCHHHHHhcCCccHHHHHHHHHHHHHHCCChHHHhhccCCCC
Confidence            44434333          1122222333 334455556666 8888999999999999999999999955422 111 11


Q ss_pred             CCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959        331 LKPFVIFVAPPPFELLKQKRIRRGDNF  357 (366)
Q Consensus       331 ~~p~vi~~~~~~~~~l~~~~~~r~~~~  357 (366)
                      .+++.++...++++.|++||++|-+.+
T Consensus       183 ~~~~~~i~l~~dr~~L~~rI~~Rv~~M  209 (287)
T TIGR00174       183 FYDAVQIGLASSREPLHQRIEQRVHDM  209 (287)
T ss_pred             CCCeEEEEECCCHHHHHHHHHHHHHHH
Confidence            255555556689999999999996653

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=9.9e-26  Score=214.98  Aligned_cols=196  Identities=18%  Similarity=0.153  Sum_probs=155.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeecc---------CCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEE
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHT---------SRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGE  174 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~t---------Tr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~  174 (366)
                      +++++|+||||||||.|+..|+++.+...++++..         |++|+..|..+++||.++..++.+.++++.|.+.+ 
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a-   81 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA-   81 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH-
Confidence            57899999999999999999999988777776644         99999999999999999999999999999999887 


Q ss_pred             EecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---CC
Q psy16959        175 YEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YD  251 (366)
Q Consensus       175 ~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~  251 (366)
                             ...+.++.++|+.|+                                       +|||||||++|++.   ..
T Consensus        82 -------~~~i~~i~~rgk~pI---------------------------------------lVGGTglY~~aL~~g~~~~  115 (308)
T COG0324          82 -------LAAIDDILARGKLPI---------------------------------------LVGGTGLYLKALLEGLSLL  115 (308)
T ss_pred             -------HHHHHHHHhCCCCcE---------------------------------------EEccHHHHHHHHHcCCCCC
Confidence                   788889999999999                                       99999999999954   57


Q ss_pred             CCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhh-cc-c-
Q psy16959        252 PEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLK-IL-R-  327 (366)
Q Consensus       252 p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~-~l-~-  327 (366)
                      |..+...+.+          +...+...+... +...+...|| +++.|.++|.+|++|++||+.++++|.+.. .- + 
T Consensus       116 p~~~~~~r~~----------~~~~~~~~g~~~-L~~~L~~~Dp~~a~~i~pnD~~Ri~RALEv~~~tGk~~s~~~~~~~~  184 (308)
T COG0324         116 PEADPEVRRR----------LEAELAELGNDA-LHAELKKIDPEAAAKIHPNDPQRIIRALEVYYLTGKPISELQKRSRP  184 (308)
T ss_pred             CCCCHHHHHH----------HHHHHHhcCHHH-HHHHHHhhCHHHHHhcCCCchhHHHHHHHHHHHHCCCHHHHhhcccC
Confidence            7777665554          111222222222 2233444444 777799999999999999999999996542 22 2 


Q ss_pred             cCCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959        328 SSDLKPFVIFVAPPPFELLKQKRIRRGDNF  357 (366)
Q Consensus       328 ~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~  357 (366)
                      ....+.+++++..++++.|++||++|-|..
T Consensus       185 ~~~~~~~~~~~l~~~r~~L~~rI~~R~d~M  214 (308)
T COG0324         185 ILEPYDILIIALAADREVLYERINRRVDAM  214 (308)
T ss_pred             CCCCcceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            223566776666699999999999997753

>PLN02840 tRNA dimethylallyltransferase

Probab=99.90  E-value=2.6e-25  Score=220.43  Aligned_cols=199  Identities=17%  Similarity=0.100  Sum_probs=151.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcc---------eeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEE
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFA---------AAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGE  174 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~---------~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~  174 (366)
                      +.+|+|+||+|||||+|+..|++..+...         ..++.+|++|+..|.++++||+++..++.+.++.+.|...+ 
T Consensus        21 ~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~A-   99 (421)
T PLN02840         21 EKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDDA-   99 (421)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHHH-
Confidence            45789999999999999999998765322         33456799999999999999999999999999999998887 


Q ss_pred             EecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---CC
Q psy16959        175 YEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YD  251 (366)
Q Consensus       175 ~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~  251 (366)
                             ...+.+++++|+.||                                       +|||||||++|++.   ..
T Consensus       100 -------~~~I~~i~~rgkiPI---------------------------------------vVGGTGlYl~aLl~G~~~~  133 (421)
T PLN02840        100 -------RRATQDILNRGRVPI---------------------------------------VAGGTGLYLRWYIYGKPDV  133 (421)
T ss_pred             -------HHHHHHHHhcCCCEE---------------------------------------EEcCccHHHHHHhcCCCCC
Confidence                   777888999999999                                       99999999999954   34


Q ss_pred             CCCCCCcchhhhccCccchhHHHHHhc----CChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhcc-
Q psy16959        252 PEDDMYIPCKELGMSFQKGDILHVISQ----DDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKIL-  326 (366)
Q Consensus       252 p~~d~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l-  326 (366)
                      |..+..++.+          +...+..    .+.+.++..++...||.++.|+++|.+|++||+||+..++.|.+.... 
T Consensus       134 p~~~~~~r~~----------l~~~l~~~~~~~g~~~l~~~Ll~~~DP~A~~i~pnD~~Ri~RALEV~~~TG~~~S~~~~~  203 (421)
T PLN02840        134 PKSSPEITSE----------VWSELVDFQKNGDWDAAVELVVNAGDPKARSLPRNDWYRLRRSLEIIKSSGSPPSAFSLP  203 (421)
T ss_pred             CCCCHHHHHH----------HHHHHHHhccccCHHHHHHHHHhccCcHHHhcCCCcHHHHHHHHHHHHHHCCCHHHhhcc
Confidence            5555444433          1122222    112334445566656688889999999999999999999999554211 


Q ss_pred             ------c-------------c----CCCCcEEEEEeCCCHHHHHHHHHhcCCCCCc
Q psy16959        327 ------R-------------S----SDLKPFVIFVAPPPFELLKQKRIRRGDNFKT  359 (366)
Q Consensus       327 ------~-------------~----~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~  359 (366)
                            .             .    ...|.+++|...++|+.|++||++|-+.+-.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~L~~dR~~Ly~RI~~Rvd~Ml~  259 (421)
T PLN02840        204 YDSFREQLVTEDTDSSLEDGSSAETELDYDFLCFFLSSPRLDLYRSIDLRCEEMLA  259 (421)
T ss_pred             ccchhhccccccccccccccccccCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence                  0             1    1125566666678999999999999776544

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.90  E-value=3.6e-23  Score=189.16  Aligned_cols=140  Identities=26%  Similarity=0.498  Sum_probs=127.3

Q ss_pred             CCCCCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccc
Q psy16959        100 RSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSY  179 (366)
Q Consensus       100 ~~~~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~  179 (366)
                      .|..+++|+|+||+|||||||+..|.+....+.+++++|||+|+++|.+|.+|||+|.++|.+++..|.|++|+++.|++
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~   88 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY   88 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence            45577899999999999999999998775578899999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcc
Q psy16959        180 YGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIP  259 (366)
Q Consensus       180 YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~  259 (366)
                      ||                                                                              
T Consensus        89 YG------------------------------------------------------------------------------   90 (206)
T PRK14738         89 YG------------------------------------------------------------------------------   90 (206)
T ss_pred             ec------------------------------------------------------------------------------
Confidence            99                                                                              


Q ss_pred             hhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEe
Q psy16959        260 CKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVA  339 (366)
Q Consensus       260 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~  339 (366)
                                                             |+.+.++.++++|++|+++++..++..++......++||+.
T Consensus        91 ---------------------------------------t~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~  131 (206)
T PRK14738         91 ---------------------------------------VPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLA  131 (206)
T ss_pred             ---------------------------------------CCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEe
Confidence                                                   89999999999999999999998887777543344778888


Q ss_pred             CCCHHHHHHHHHhcCCC
Q psy16959        340 PPPFELLKQKRIRRGDN  356 (366)
Q Consensus       340 ~~~~~~l~~~~~~r~~~  356 (366)
                      |++.++|.+|+..|+++
T Consensus       132 pps~e~l~~Rl~~R~~~  148 (206)
T PRK14738        132 PPSMDELTRRLELRRTE  148 (206)
T ss_pred             CCCHHHHHHHHHHcCCC
Confidence            89999999999999875

>KOG3580|consensus

Probab=99.87  E-value=2.2e-23  Score=207.19  Aligned_cols=339  Identities=18%  Similarity=0.270  Sum_probs=221.6

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEee-ccCcc-----cccccccC---
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG-REAWK-----TSHAFRHT---   78 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~~-~~~w~-----ps~~~~~~---   78 (366)
                      +..|||..+...|.|.+.|.|+.||.||.|||+...+++..++..+|..+.|.+.++. ...-|     |+-.-...   
T Consensus       218 gSqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~  297 (1027)
T KOG3580|consen  218 GSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTLINIPSLNDSDSEIE  297 (1027)
T ss_pred             cchhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCceeeecCCCcccccccc
Confidence            4578999999999999999999999999999999999999999999999999988762 11111     11110000   


Q ss_pred             --------ccCccCc----ccc--ccceeeecccc-CCCC--CCc--EEEeCCCCCChHHHHHHHHhcc-CCcceeeecc
Q psy16959         79 --------EHTHFDV----DEI--LTYEEVSLYYP-RSNE--KRP--IVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHT  138 (366)
Q Consensus        79 --------~~~~~~~----~~~--~~YE~V~~~~~-~~~~--~r~--ivL~GpsgsGK~~L~~~L~~~~-~~~~~~~~~t  138 (366)
                              ....|++    +..  ..|..-....| .|..  ..+  +-=.|.+-   |.     ++.+ +.-..+++.+
T Consensus       298 disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat~---tP-----vks~~d~~~~~V~e~  369 (1027)
T KOG3580|consen  298 DISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGATP---TP-----VKSTGDIAGTVVPET  369 (1027)
T ss_pred             chhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcccCCCCC---CC-----ccCccccCCcccccc
Confidence                    0000000    000  01111111111 1111  000  00011110   00     0000 1112334444


Q ss_pred             CCCCC-------CCCCCC-cceeecCHHHHHHHH----------HhcceeEEEEE---------ecccccchhhhhHHhc
Q psy16959        139 SRPMK-------DGEVDG-QDYHFITRAQFELDI----------LARKFIEHGEY---------EKSYYGLRTKLDKLQA  191 (366)
Q Consensus       139 Tr~pr-------~~E~~g-~~y~~vs~~ef~~~~----------~~g~fle~~~~---------~g~~YG~~~~~~~~~~  191 (366)
                      |-.|+       +.+..+ ..|...|.+.|...-          ..|.-+-..-.         .|...|.++..+-|+.
T Consensus       370 t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KGdSvGLRLAGGNDVGIFVaGvqegspA~~eGlqE  449 (1027)
T KOG3580|consen  370 TKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKGDSVGLRLAGGNDVGIFVAGVQEGSPAEQEGLQE  449 (1027)
T ss_pred             ccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecCCeeeeEeccCCceeEEEeecccCCchhhccccc
Confidence            43333       222212 223445555543221          12222222222         2344556677788999


Q ss_pred             CCCeeeee---cccccccccccccCCCcccccc-ceecccccccccccccC-CCeeeeeeecCCCCCCCCCcchhhhccC
Q psy16959        192 GIPTLNFD---IYALTETWLTDEINDPELGFSK-FNVFRSDRTKQTSHKSD-GGGMHVIAHFDYDPEDDMYIPCKELGMS  266 (366)
Q Consensus       192 g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-G~glYirAl~~~~p~~d~~~~~~~~~~~  266 (366)
                      |..++.+|   |+++.++.++.|+++.+.+... +-.+++..++..+..+| |++||||.+|.++++++.       +|+
T Consensus       450 GDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~iv~s~vGDSFyIRtHFE~Eke~P~-------gL~  522 (1027)
T KOG3580|consen  450 GDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDIVASGVGDSFYIRTHFECEKETPQ-------GLA  522 (1027)
T ss_pred             cceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHHHhccCCceeEEeeeeeecCCCCc-------ccc
Confidence            99999887   9999999999999998888776 77888999999999999 999999999999999887       899


Q ss_pred             ccchhHHHHHhc---CChhhHHHHHccc----------------------------------------------------
Q psy16959        267 FQKGDILHVISQ---DDPNWWQAYREGE----------------------------------------------------  291 (366)
Q Consensus       267 ~~~g~~~~~~~~---~~~~~~~~~~~~~----------------------------------------------------  291 (366)
                      |..||+++++++   +....|++-+.++                                                    
T Consensus       523 FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNksRAEQlASvq~aqr~~agGdRAdFWR~RGlRsg~Kknlr  602 (1027)
T KOG3580|consen  523 FTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNKSRAEQLASVQNAQRDNAGGDRADFWRMRGLRSGVKKNLR  602 (1027)
T ss_pred             ccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCccHHHHHHHHHhhccccccchHHHHHHHhhhhhhhhhhhh
Confidence            999999998877   5555565532111                                                    


Q ss_pred             --------------Ccc---------------------------------------------------cccCCChHHHHH
Q psy16959        292 --------------EDH---------------------------------------------------TLAGTSLDAIRT  306 (366)
Q Consensus       292 --------------~~~---------------------------------------------------~~~~i~~~~i~~  306 (366)
                                    +++                                                   +.-.|+++.|+.
T Consensus       603 kSREDLsA~~vqtkfPaYERVvLREAgFkRPVvifGPiADiAmeKLa~E~PD~fqiAkteprdag~~~stg~irL~Tvrq  682 (1027)
T KOG3580|consen  603 KSREDLSAVVVQTKFPAYERVVLREAGFKRPVVIFGPIADIAMEKLANELPDWFQIAKTEPRDAGSEKSTGVIRLNTVRQ  682 (1027)
T ss_pred             hhhhhhhhceecccCCchhhhhhhhhcccCceEEeccHHHHHHHHHhhhCcchhhhhccccccCCcccccceEEehhhHH
Confidence                          000                                                   125589999999


Q ss_pred             HHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCchhh
Q psy16959        307 VVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTA  362 (366)
Q Consensus       307 vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~~~~  362 (366)
                      ||+..||++||++|+++++||+.++||||||..|.++.-+|. ...|.+......+
T Consensus       683 iieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvkt-mRqrL~P~Sr~Ss  737 (1027)
T KOG3580|consen  683 IIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKT-MRQRLAPTSRKSS  737 (1027)
T ss_pred             HHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHH-HHHHhCcccchhH
Confidence            999999999999999999999999999999999999999986 4456655554443

>PLN02748 tRNA dimethylallyltransferase

Probab=99.86  E-value=2e-23  Score=210.15  Aligned_cols=198  Identities=13%  Similarity=0.070  Sum_probs=148.0

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhccCCcceeee---------ccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEE
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIP---------HTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEH  172 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~---------~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~  172 (366)
                      ..+++|+|+||||||||+|+..|++..+...++.+         ..|++|...|..+++||+++..++.+.++.+.|...
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~   99 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDH   99 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHH
Confidence            35568999999999999999999988664444444         459999999999999999999999999999999888


Q ss_pred             EEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC-CC
Q psy16959        173 GEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD-YD  251 (366)
Q Consensus       173 ~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~-~~  251 (366)
                      +        ...+.+++++|+.||                                       +||||||||+||+. +.
T Consensus       100 A--------~~~I~~I~~rgk~PI---------------------------------------lVGGTglYi~aLl~g~~  132 (468)
T PLN02748        100 A--------VPLIEEILSRNGLPV---------------------------------------IVGGTNYYIQALVSPFL  132 (468)
T ss_pred             H--------HHHHHHHHhcCCCeE---------------------------------------EEcChHHHHHHHHcCcc
Confidence            7        788889999999999                                       99999999999964 21


Q ss_pred             ----CCCCC--------CcchhhhccCccchhH--HHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEE
Q psy16959        252 ----PEDDM--------YIPCKELGMSFQKGDI--LHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVL  316 (366)
Q Consensus       252 ----p~~d~--------~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l  316 (366)
                          |..+.        .++.+          +  ...+...+.. .+..++...|| ++..++++|.+||+|++||+..
T Consensus       133 ~~~~p~~~~~~~~~~~~~~r~~----------l~~~~~~~~~g~~-~l~~~L~~vDP~~A~rihpnD~rRI~RALEI~~~  201 (468)
T PLN02748        133 LDDMAEETEDCTFVVASVLDEH----------MDVESGLGNDDED-HGYELLKELDPVAANRIHPNNHRKINRYLELYAT  201 (468)
T ss_pred             cccCCccccccccccCHHHHHH----------HHHHHHHHhcCHH-HHHHHHHhhCHHHHhhcCCccHHHHHHHHHHHHH
Confidence                11110        01111          1  0122223333 34445666677 8888999999999999999999


Q ss_pred             cccchhhh-cc-cc-------CCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959        317 NLHPQSLK-IL-RS-------SDLKPFVIFVAPPPFELLKQKRIRRGDNF  357 (366)
Q Consensus       317 ~~~p~~~~-~l-~~-------~~~~p~vi~~~~~~~~~l~~~~~~r~~~~  357 (366)
                      ++.|.+.. .- +.       ...|..++|+...++++|++||++|-|.+
T Consensus       202 TG~~~S~~~~~~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~M  251 (468)
T PLN02748        202 TGVLPSKLYQGKAAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCM  251 (468)
T ss_pred             HCcCHHHHhhhccccccccccCCCCceEEEEeCCCHHHHHHHHHHHHHHH
Confidence            99995542 11 10       11245556666689999999999997654

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.84  E-value=2.2e-20  Score=160.06  Aligned_cols=119  Identities=38%  Similarity=0.706  Sum_probs=112.7

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchh
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRT  184 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~  184 (366)
                      +|+|+||||||||+|+..|++. +..+...+++|||+|+.+|.+|++|+|++..+|.+++..+.|++++++.+++||   
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg---   77 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYG---   77 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEec---
Confidence            5899999999999999999987 567888999999999999999999999999999999999999999999999999   


Q ss_pred             hhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhc
Q psy16959        185 KLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELG  264 (366)
Q Consensus       185 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~  264 (366)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (137)
T cd00071          78 --------------------------------------------------------------------------------   77 (137)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959        265 MSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP  341 (366)
Q Consensus       265 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~  341 (366)
                                                        +..+.+++++++|++|++++++.++..++.....+++||+.++
T Consensus        78 ----------------------------------~~~~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~  120 (137)
T cd00071          78 ----------------------------------TSKAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP  120 (137)
T ss_pred             ----------------------------------CcHHHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC
Confidence                                              7788999999999999999999999999988889999999987

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG0707|consensus

Probab=99.83  E-value=2.3e-20  Score=169.70  Aligned_cols=139  Identities=34%  Similarity=0.685  Sum_probs=130.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG  181 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG  181 (366)
                      .-++++|+||+|+||++|..+|.++ +..|+++++||||.||.+|++|++|||++..+|+.++..+.|+|++++.|++||
T Consensus        36 ~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yG  115 (231)
T KOG0707|consen   36 DFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYG  115 (231)
T ss_pred             CCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCC
Confidence            3389999999999999999999987 556999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959        182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK  261 (366)
Q Consensus       182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~  261 (366)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (231)
T KOG0707|consen  116 --------------------------------------------------------------------------------  115 (231)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959        262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP  341 (366)
Q Consensus       262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~  341 (366)
                                                           ++..++++++..|++|+|++.-+++...+...+.++.||+.|+
T Consensus       116 -------------------------------------tsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pp  158 (231)
T KOG0707|consen  116 -------------------------------------TSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPP  158 (231)
T ss_pred             -------------------------------------chHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCC
Confidence                                                 6778999999999999999999999888888899999999999


Q ss_pred             CHHHHHHHHHhcCCCCC
Q psy16959        342 PFELLKQKRIRRGDNFK  358 (366)
Q Consensus       342 ~~~~l~~~~~~r~~~~~  358 (366)
                      +-..+.+|+..||...+
T Consensus       159 s~~~~e~rl~~rgte~~  175 (231)
T KOG0707|consen  159 SIKILEERLRARGTETE  175 (231)
T ss_pred             cchhHHHHhhccCcchH
Confidence            99999999999976543

>KOG0708|consensus

Probab=99.81  E-value=6.3e-20  Score=176.29  Aligned_cols=142  Identities=30%  Similarity=0.542  Sum_probs=128.9

Q ss_pred             ccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHH
Q psy16959         85 VDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD  163 (366)
Q Consensus        85 ~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~  163 (366)
                      ....++||.|.++  .+...|||+|+||.   |..|...|..+ |+.|..|+++||++.              .++|++.
T Consensus       170 e~~~lsY~~V~~~--~~~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~  230 (359)
T KOG0708|consen  170 ELSLLSYELVERL--DSNYLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERD  230 (359)
T ss_pred             ccccccchhhhhh--hccccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhh
Confidence            4567899999998  67899999999998   88899999887 899999999999885              7899999


Q ss_pred             HHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeee
Q psy16959        164 ILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMH  243 (366)
Q Consensus       164 ~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glY  243 (366)
                      ++.+.|++++++++++||                                                              
T Consensus       231 ~k~~~fI~~~q~~~~~~~--------------------------------------------------------------  248 (359)
T KOG0708|consen  231 SKEETFIDAGQRSNGLYG--------------------------------------------------------------  248 (359)
T ss_pred             cccCceeeecccCCCcce--------------------------------------------------------------
Confidence            999999999999999999                                                              


Q ss_pred             eeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhh
Q psy16959        244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSL  323 (366)
Q Consensus       244 irAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~  323 (366)
                                                                             ++..+|+.++..|+||+|++...++
T Consensus       249 -------------------------------------------------------tsv~si~~va~k~~HCiLdv~~~ai  273 (359)
T KOG0708|consen  249 -------------------------------------------------------TSVASIREVAEKGKHCLLDVGGDAI  273 (359)
T ss_pred             -------------------------------------------------------ehHHHHHHHhcCCCceEEecCcchH
Confidence                                                                   8999999999999999999999999


Q ss_pred             hccccCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCchhhhhhC
Q psy16959        324 KILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTAQAQY  366 (366)
Q Consensus       324 ~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~  366 (366)
                      ++|...++|||||||.+.+.+.++++.    +..+..+|+++|
T Consensus       274 ~rLq~~~IyPIvIfIr~ks~~~i~e~~----~~~t~~~ake~~  312 (359)
T KOG0708|consen  274 RRLQRNQIYPIVIFIRVKSKKQIKERN----LKITGEQAKELL  312 (359)
T ss_pred             HHHHhcceeceEEEEEechHHHHHHHh----cccchHHHHHHH
Confidence            999999999999999999999999877    555566676665

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.80  E-value=1.1e-18  Score=155.15  Aligned_cols=135  Identities=32%  Similarity=0.580  Sum_probs=123.1

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchh
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRT  184 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~  184 (366)
                      ++++|+||+|||||||++.|++..+.+...+++|||+|+.++.++.+|+|++.++|...+..+.|+++..+.++.||   
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~---   78 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYG---   78 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeC---
Confidence            68999999999999999999987555777889999999999999999999999999999999999999999999999   


Q ss_pred             hhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhc
Q psy16959        185 KLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELG  264 (366)
Q Consensus       185 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~  264 (366)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (180)
T TIGR03263        79 --------------------------------------------------------------------------------   78 (180)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHH
Q psy16959        265 MSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFE  344 (366)
Q Consensus       265 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~  344 (366)
                                                        +..+.+..++++|++|++++++.++..+...-..++.||+.+++.+
T Consensus        79 ----------------------------------~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e  124 (180)
T TIGR03263        79 ----------------------------------TPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLE  124 (180)
T ss_pred             ----------------------------------CcHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHH
Confidence                                              7788999999999999999999888777655456789999999999


Q ss_pred             HHHHHHHhcCCC
Q psy16959        345 LLKQKRIRRGDN  356 (366)
Q Consensus       345 ~l~~~~~~r~~~  356 (366)
                      .+++|+.+|++.
T Consensus       125 ~~~~Rl~~r~~~  136 (180)
T TIGR03263       125 ELERRLRKRGTD  136 (180)
T ss_pred             HHHHHHHHcCCC
Confidence            999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.77  E-value=4.8e-18  Score=154.34  Aligned_cols=136  Identities=31%  Similarity=0.524  Sum_probs=123.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL  182 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~  182 (366)
                      .+++|+|+||||||||||+..|+...+.+...+++|||+|+.+|.+|.+|++++.++|.+.+..+.|+++.++.++.|| 
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-   82 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG-   82 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc-
Confidence            4578999999999999999999987557888899999999999999999999999999999999999999999999999 


Q ss_pred             hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959        183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE  262 (366)
Q Consensus       183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~  262 (366)
                                                                                                      
T Consensus        83 --------------------------------------------------------------------------------   82 (205)
T PRK00300         83 --------------------------------------------------------------------------------   82 (205)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCC
Q psy16959        263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP  342 (366)
Q Consensus       263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~  342 (366)
                                                          +....+..++.+|.+|++++++.+...+...-..+++|++.+++
T Consensus        83 ------------------------------------~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s  126 (205)
T PRK00300         83 ------------------------------------TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPS  126 (205)
T ss_pred             ------------------------------------CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcC
Confidence                                                67888999999999999999998886666543367889999899


Q ss_pred             HHHHHHHHHhcCC
Q psy16959        343 FELLKQKRIRRGD  355 (366)
Q Consensus       343 ~~~l~~~~~~r~~  355 (366)
                      .+.+.+|+..|++
T Consensus       127 ~~~l~~Rl~~R~~  139 (205)
T PRK00300        127 LEELERRLRGRGT  139 (205)
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999999986

>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2

Probab=99.72  E-value=7.6e-20  Score=172.07  Aligned_cols=165  Identities=17%  Similarity=0.128  Sum_probs=113.5

Q ss_pred             eeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccC
Q psy16959        134 AIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEIN  213 (366)
Q Consensus       134 ~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  213 (366)
                      .++.-|++|+..|..+++||+++..++.+.++.+.|.+.+        .+.+.++.++|+.||                 
T Consensus         6 ~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a--------~~~i~~i~~rgk~PI-----------------   60 (253)
T PF01715_consen    6 GLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDA--------REAIEDILARGKIPI-----------------   60 (253)
T ss_dssp             T-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHH--------HHHHHHHHHTT-EEE-----------------
T ss_pred             CCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHH--------HHHHHHHHhcCCeEE-----------------
Confidence            3567799999999999999999999999999999999987        788889999999999                 


Q ss_pred             CCccccccceecccccccccccccCCCeeeeeeecC---CCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcc
Q psy16959        214 DPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG  290 (366)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  290 (366)
                                            +|||||||++|++.   ..|+.|..++.+          +...+...+...+++ ++.
T Consensus        61 ----------------------lvGGTglYi~all~g~~~~p~~~~~~r~~----------~~~~~~~~~~~~l~~-~L~  107 (253)
T PF01715_consen   61 ----------------------LVGGTGLYIQALLNGLADIPEVDPELRAE----------LRAELEEEGNEELYE-ELK  107 (253)
T ss_dssp             ----------------------EEES-HHHHHHHHCTS--TSSSHHHHHHH----------HHHHHHHSCHHHHHH-HHH
T ss_pred             ----------------------EECChHHHHHHHHhChhhhccccHHHHHH----------HHHHHHhccHHHHHH-HHH
Confidence                                  99999999999954   355555544443          223444444444444 455


Q ss_pred             cCcc-cccCCChHHHHHHHHcCCeEEEcccchhh-hcc-ccCCCCcEEEEEeCCCHHHHHHHHHhcCCC
Q psy16959        291 EEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSL-KIL-RSSDLKPFVIFVAPPPFELLKQKRIRRGDN  356 (366)
Q Consensus       291 ~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~-~~l-~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~  356 (366)
                      ..|| ++..|+++|.+|++||++++..++.|.+. ... .....++..+|...++++.|++||++|-+.
T Consensus       108 ~~DP~~A~~i~~nd~~Ri~RALei~~~tG~~~s~~~~~~~~~~~~~~~~i~L~~~r~~L~~RI~~Rvd~  176 (253)
T PF01715_consen  108 EVDPEAAAKIHPNDRRRIIRALEIYELTGKPPSEWQKKQKPPPRYDFLVIGLDRDREELYERINKRVDE  176 (253)
T ss_dssp             HC-HHHHCTS-TT-HHHHHHHHHHHHHHSS-HHHHHHCHHHCBSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             hhCcHhhhcCCCCcHHHHHHHHHHHHhcCCChhHhhhcccccccCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence            5555 88999999999999999999999999554 333 233445666666669999999999999654

5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....

>PLN02165 adenylate isopentenyltransferase

Probab=99.52  E-value=2.4e-15  Score=145.52  Aligned_cols=100  Identities=12%  Similarity=0.145  Sum_probs=79.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCccee---------eeccCCCCCCCCCCCcceeecCHHHHHH-HHHhcceeEE
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAA---------IPHTSRPMKDGEVDGQDYHFITRAQFEL-DILARKFIEH  172 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~---------~~~tTr~pr~~E~~g~~y~~vs~~ef~~-~~~~g~fle~  172 (366)
                      .+++++|+||||||||+|+..|++..+....+         .+..|.+|...|..|++||+++...... .++.+.|...
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~~  121 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRSL  121 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHHH
Confidence            45689999999999999999999875433222         3455999999999999999998877665 5666677555


Q ss_pred             EEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC
Q psy16959        173 GEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD  249 (366)
Q Consensus       173 ~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~  249 (366)
                      +        ...+.++.++|+.||                                       ++||||||++||+.
T Consensus       122 a--------~~~I~~i~~~~~~PI---------------------------------------~vGGTglYi~aLl~  151 (334)
T PLN02165        122 A--------SLSISEITSRQKLPI---------------------------------------VAGGSNSFIHALLA  151 (334)
T ss_pred             H--------HHHHHHHHHCCCcEE---------------------------------------EECChHHHHHHHHc
Confidence            4        555667778999999                                       99999999999974

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.43  E-value=5.1e-13  Score=119.98  Aligned_cols=75  Identities=20%  Similarity=0.279  Sum_probs=63.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc-CCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG  181 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~-~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG  181 (366)
                      ..+++|+||+|||||||++.|+... ..+......+|++++.   .+.++++++.++|.++++.+.|.+++.++|++||
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg   77 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASA---GSENHIALSEQEFFTRAGQNLFALSWHANGLYYG   77 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccch---hHHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence            4679999999999999999998763 3455566677887653   3567899999999999999999888899999999

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.42  E-value=3.1e-12  Score=113.73  Aligned_cols=74  Identities=19%  Similarity=0.256  Sum_probs=64.5

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC---CcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD---RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG  181 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~---~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG  181 (366)
                      ++++|+||+|||||||++.|+....   ...+..++|||+++   .+|.+|++++.++|..+...+.|.++.++.+++||
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   78 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG   78 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence            4789999999999999999987532   24566789998864   56899999999999999999999999999999999

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG1384|consensus

Probab=99.24  E-value=2.7e-12  Score=122.30  Aligned_cols=100  Identities=15%  Similarity=0.181  Sum_probs=88.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCccee---------eeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEE
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAA---------IPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHG  173 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~---------~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~  173 (366)
                      ..++|+|+|+||+|||.|+-.|+.+++...+.         .+.+|.++...|..|++||.+....++..+.+++|-..+
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a   85 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA   85 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence            45789999999999999999999876543333         346699999999999999999999999999999998887


Q ss_pred             EEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC
Q psy16959        174 EYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD  249 (366)
Q Consensus       174 ~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~  249 (366)
                              .+++.++.++|+.|+                                       ++||++.|++||+.
T Consensus        86 --------~~aie~I~~rgk~PI---------------------------------------v~GGs~~yi~al~~  114 (348)
T KOG1384|consen   86 --------SRAIEEIHSRGKLPI---------------------------------------VVGGSNSYLQALLS  114 (348)
T ss_pred             --------HHHHHHHHhCCCCCE---------------------------------------EeCCchhhHHHHhh
Confidence                    889999999999999                                       99999999999975

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.19  E-value=2.4e-10  Score=98.99  Aligned_cols=91  Identities=23%  Similarity=0.308  Sum_probs=74.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc---cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED---SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSY  179 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~---~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~  179 (366)
                      +.+.|+++||||+||+||+..+...   -..+.+.-...||+...+   +.+|.-+|..||++....|.|.-.++.+|..
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~   80 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGLS   80 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCcc
Confidence            5789999999999999999988754   234778888889987543   5688999999999999999999999999999


Q ss_pred             ccchhhh-hHHhcCCCee
Q psy16959        180 YGLRTKL-DKLQAGIPTL  196 (366)
Q Consensus       180 YG~~~~~-~~~~~g~~~~  196 (366)
                      ||+++.+ +++++|..++
T Consensus        81 Ygip~eId~wl~~G~vvl   98 (192)
T COG3709          81 YGIPAEIDLWLAAGDVVL   98 (192)
T ss_pred             ccCchhHHHHHhCCCEEE
Confidence            9976644 4445555555

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.03  E-value=1e-09  Score=85.04  Aligned_cols=63  Identities=40%  Similarity=0.564  Sum_probs=57.3

Q ss_pred             CcEEEEeC----CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG----DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~----~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....    .++||+.+.++|||+++| |++||.|++|||.++.+++++++..+++.+.+.++|+
T Consensus        13 G~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~   79 (81)
T PF00595_consen   13 GFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT   79 (81)
T ss_dssp             SEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred             CEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence            67777543    389999999999999999 9999999999999999999999999999999888775

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PRK08356 hypothetical protein; Provisional

Probab=99.00  E-value=5.1e-10  Score=101.27  Aligned_cols=75  Identities=19%  Similarity=0.306  Sum_probs=67.2

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL  182 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~  182 (366)
                      .+|+|+||+||||+|++..|.+ . ++. .++++++.++..+.++.+|+|++..+|..+++.+.|++++++.+++||.
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~-~-g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~   80 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE-K-GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGE   80 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-C-CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCc
Confidence            4688999999999999999954 3 555 7889999888899999999999999999999999999999999999993

>KOG3550|consensus

Probab=98.96  E-value=1.2e-09  Score=92.75  Aligned_cols=59  Identities=27%  Similarity=0.615  Sum_probs=56.6

Q ss_pred             EeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         6 ~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+..|||++++|||.|++.|.|+.||++++|||+++.+-.|+.++.+|+...|.+.|+
T Consensus       112 eqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklv  170 (207)
T KOG3550|consen  112 EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLV  170 (207)
T ss_pred             ccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEE
Confidence            34689999999999999999999999999999999999999999999999999999998

>KOG3580|consensus

Probab=98.74  E-value=2.2e-08  Score=101.19  Aligned_cols=55  Identities=27%  Similarity=0.445  Sum_probs=48.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      -||||+.|.+|+||++.| |+.||+||.||.+++.++..++|+..|...+  +.++++
T Consensus       429 VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtil  485 (1027)
T KOG3580|consen  429 VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTIL  485 (1027)
T ss_pred             eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeeh
Confidence            489999999999999999 9999999999999999999999998887653  444443

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.63  E-value=1.8e-07  Score=69.94  Aligned_cols=62  Identities=32%  Similarity=0.535  Sum_probs=53.6

Q ss_pred             CcEEEEeCC-eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEE
Q psy16959          1 GATIRNEGD-AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMT   63 (366)
Q Consensus         1 G~~i~~~~~-gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l   63 (366)
                      |+.+..... +++|..+.++|||+.+| |++||+|++|||.++.+.+++++..+|+...+ .+.+
T Consensus         4 G~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l   67 (70)
T cd00136           4 GFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTL   67 (70)
T ss_pred             cEEEecCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEE
Confidence            566665554 89999999999999988 99999999999999999999999999998763 4444

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.47  E-value=8e-07  Score=68.31  Aligned_cols=63  Identities=32%  Similarity=0.543  Sum_probs=53.7

Q ss_pred             CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....   .+++|..+.++|||+++| |++||+|++|||.++..++++++...++...+.+++.
T Consensus        15 G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~   80 (82)
T cd00992          15 GFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT   80 (82)
T ss_pred             CEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence            45554332   479999999999999988 9999999999999999999999999999877766553

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG0609|consensus

Probab=98.38  E-value=1.2e-07  Score=95.51  Aligned_cols=96  Identities=41%  Similarity=0.758  Sum_probs=72.5

Q ss_pred             cCCCeeeee---cccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCc
Q psy16959        191 AGIPTLNFD---IYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSF  267 (366)
Q Consensus       191 ~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~  267 (366)
                      .|..+.++|   +.+.+++.+..-+-... |...|+++|+.|  +.....   -.|+||+|||.|..|+.+||++++|+|
T Consensus       167 ~GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~itfkiiP~~~--~~~~~~---~~~vra~FdYdP~~D~~IPCkEagl~F  240 (542)
T KOG0609|consen  167 VGDEILEVNGISVANKSPEELQELLRNSR-GSITFKIIPSYR--PPPQQQ---VVFVRALFDYDPKEDDLIPCKEAGLPF  240 (542)
T ss_pred             eccchheecCeecccCCHHHHHHHHHhCC-CcEEEEEccccc--CCCcee---eeeehhhcCcCcccCCcccchhcCCcc
Confidence            344444444   33333444444444444 888899999877  111111   589999999999999999999999999


Q ss_pred             cchhHHHHHhcCChhhHHHHHcccC
Q psy16959        268 QKGDILHVISQDDPNWWQAYREGEE  292 (366)
Q Consensus       268 ~~g~~~~~~~~~~~~~~~~~~~~~~  292 (366)
                      +.||+++++++.+.+||+++..+..
T Consensus       241 ~~GDILqIv~qdD~nWWQA~~~~~~  265 (542)
T KOG0609|consen  241 QRGDILQIVSQDDPNWWQARRVGDP  265 (542)
T ss_pred             cccceeeeccCCCcchhhhhcccCc
Confidence            9999999999999999999888753

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.31  E-value=3.2e-06  Score=65.05  Aligned_cols=55  Identities=35%  Similarity=0.506  Sum_probs=49.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||.|++|||..+.+.++.+...+++.....+.+.
T Consensus        26 ~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~   80 (85)
T smart00228       26 GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT   80 (85)
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            689999999999999999 9999999999999999999999999998866566554

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.26  E-value=5e-06  Score=64.47  Aligned_cols=59  Identities=27%  Similarity=0.552  Sum_probs=51.2

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ   60 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~   60 (366)
                      |+.+..+..+++|..+.++|||+++| |++||+|++|||..+.+.+++++...++...+.
T Consensus         5 G~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~   63 (85)
T cd00988           5 GLELKYDDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGT   63 (85)
T ss_pred             EEEEEEcCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC
Confidence            55666667889999999999999998 999999999999999999889999888765443

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3553|consensus

Probab=98.22  E-value=9.3e-07  Score=70.22  Aligned_cols=48  Identities=25%  Similarity=0.366  Sum_probs=45.6

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG   56 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~   56 (366)
                      +.||||.+|.+||||+.+| |+.+|.|+.+||-++.-++|++|+.-|+.
T Consensus        58 D~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k  105 (124)
T KOG3553|consen   58 DKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK  105 (124)
T ss_pred             CccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH
Confidence            4699999999999999999 99999999999999999999999998876

>KOG3571|consensus

Probab=98.20  E-value=2.1e-06  Score=85.76  Aligned_cols=68  Identities=22%  Similarity=0.384  Sum_probs=61.8

Q ss_pred             eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc---CCCcEEEeeccCcccccc
Q psy16959          7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG---LTGQEMTMGREAWKTSHA   74 (366)
Q Consensus         7 ~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~---~~~~v~l~~~~~w~ps~~   74 (366)
                      .++||||+.|++||..+..|++.+||.||.||.+++++++.++|+.+|+.   .+++++|+....|.|+.+
T Consensus       275 gDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP~~q  345 (626)
T KOG3571|consen  275 GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDPNPQ  345 (626)
T ss_pred             CCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCCCCc
Confidence            45899999999999999999999999999999999999999999999975   478899998888887653

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.17  E-value=8.5e-06  Score=63.19  Aligned_cols=58  Identities=40%  Similarity=0.605  Sum_probs=45.6

Q ss_pred             CcEEEEeCC--eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHH-HcCCCcE
Q psy16959          1 GATIRNEGD--AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL-VGLTGQE   61 (366)
Q Consensus         1 G~~i~~~~~--gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~L-k~~~~~v   61 (366)
                      |+.+.....  +++|..|.++|||+++| |++||.|++|||..+.  +..+....+ +...+..
T Consensus         4 Gv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~   64 (82)
T PF13180_consen    4 GVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDT   64 (82)
T ss_dssp             SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSE
T ss_pred             CeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCE
Confidence            667776554  99999999999999999 9999999999999994  447777777 3444443

...

>KOG3209|consensus

Probab=98.12  E-value=2.3e-06  Score=88.31  Aligned_cols=52  Identities=31%  Similarity=0.441  Sum_probs=50.3

Q ss_pred             EEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        13 I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |.+|++||||++.|+|++||.|++|||+++.+++|.+++.+||.++.+|+|.
T Consensus       782 iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLt  833 (984)
T KOG3209|consen  782 IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLT  833 (984)
T ss_pred             ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEE
Confidence            6789999999999999999999999999999999999999999999999987

>KOG3209|consensus

Probab=98.05  E-value=7.5e-06  Score=84.64  Aligned_cols=64  Identities=27%  Similarity=0.368  Sum_probs=55.2

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|+.   .+-++||-++.+.|||.+.|++++||+|++|||.+..+++|+.|+++||.....+.++
T Consensus       912 GFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~  978 (984)
T KOG3209|consen  912 GFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLL  978 (984)
T ss_pred             ceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEE
Confidence            455652   2357899999999999999999999999999999999999999999999966666554

>KOG3549|consensus

Probab=97.98  E-value=8.4e-06  Score=78.19  Aligned_cols=64  Identities=30%  Similarity=0.420  Sum_probs=57.7

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|+.   .+-.|+|+++...-.|+..|.|.+||.|+.|||+.+...+|++++++|+..++.|++.
T Consensus        69 GLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlT  135 (505)
T KOG3549|consen   69 GLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLT  135 (505)
T ss_pred             eeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEE
Confidence            456653   2357899999999999999999999999999999999999999999999999999887

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.97  E-value=1.1e-05  Score=71.46  Aligned_cols=58  Identities=22%  Similarity=0.231  Sum_probs=37.1

Q ss_pred             CChHHHHHHHHcCCeEEEcccchh---h-hcccc-CCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959        299 TSLDAIRTVVNAGKICVLNLHPQS---L-KILRS-SDLKPFVIFVAPPPFELLKQKRIRRGDNF  357 (366)
Q Consensus       299 i~~~~i~~vir~~k~~~l~~~p~~---~-~~l~~-~~~~p~vi~~~~~~~~~l~~~~~~r~~~~  357 (366)
                      +..+.+.+..++|..++++..-..   . +..+. .....+.|++. ++.++|.+|+.+|++..
T Consensus        73 ~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~-~~~~~l~~R~~~R~~~~  135 (175)
T cd00227          73 AWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVR-CPGEVAEGRETARGDRV  135 (175)
T ss_pred             HHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEE-CCHHHHHHHHHhcCCcc
Confidence            455667888889999988854321   1 11111 22233556666 55799999999999764

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>KOG3551|consensus

Probab=97.94  E-value=6.3e-06  Score=80.01  Aligned_cols=63  Identities=27%  Similarity=0.452  Sum_probs=55.5

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEE
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMT   63 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l   63 (366)
                      |++|+.   +.-.|.|+.+.+|-.|++++.|..||.|++|||.++...+|++++..||..+..|.+
T Consensus        99 GISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~l  164 (506)
T KOG3551|consen   99 GISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLL  164 (506)
T ss_pred             eEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeee
Confidence            566662   345899999999999999999999999999999999999999999999997766655

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.84  E-value=5.5e-05  Score=57.89  Aligned_cols=43  Identities=33%  Similarity=0.471  Sum_probs=38.6

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCC
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG   44 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~   44 (366)
                      |+.+...++++.|..|.++|+|+.+| |++||+|++|||..+.+
T Consensus         4 G~~~~~~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~   46 (80)
T cd00990           4 GLTLDKEEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA   46 (80)
T ss_pred             cEEEEccCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence            56676667789999999999999999 99999999999999875

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=97.83  E-value=4.1e-05  Score=77.05  Aligned_cols=63  Identities=27%  Similarity=0.510  Sum_probs=57.2

Q ss_pred             CcEEEEeC-CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG-DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~-~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...+ +++.|..+++|+||+++| |++||.|+.|||.++.+++.++++..|++..|+.+.+
T Consensus       103 G~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L  166 (406)
T COG0793         103 GIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTL  166 (406)
T ss_pred             eEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEE
Confidence            56777666 899999999999999999 9999999999999999999999999999988877654

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.72  E-value=7.7e-05  Score=79.15  Aligned_cols=64  Identities=23%  Similarity=0.500  Sum_probs=54.6

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcC-----EEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEING-----IEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg-----~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+.+...+++++|..|++||||++++.|++||.|+.||+     .++.+++.++++.+|++..|+.+.+
T Consensus       247 Ga~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~L  315 (667)
T PRK11186        247 GAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRL  315 (667)
T ss_pred             EEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEE
Confidence            567777778899999999999999844999999999994     4677899999999999988876554

>KOG3606|consensus

Probab=97.69  E-value=6.2e-05  Score=70.12  Aligned_cols=53  Identities=43%  Similarity=0.758  Sum_probs=48.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQE   61 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v   61 (366)
                      .||||+++.+||.|+..|.|-+.|.+++|||+.|.+++.+|+..|+-.-...+
T Consensus       194 pGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNL  246 (358)
T KOG3606|consen  194 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNL  246 (358)
T ss_pred             CceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccce
Confidence            58999999999999999999999999999999999999999999996644443

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.69  E-value=9.1e-05  Score=71.10  Aligned_cols=63  Identities=13%  Similarity=0.133  Sum_probs=38.8

Q ss_pred             HHHHHHHHcCCeEEEcccchhh---hcc----ccCCCCcEEEEEeCCCHHHHHHHHHhcCCCC-Cchhhhhh
Q psy16959        302 DAIRTVVNAGKICVLNLHPQSL---KIL----RSSDLKPFVIFVAPPPFELLKQKRIRRGDNF-KTGTAQAQ  365 (366)
Q Consensus       302 ~~i~~vir~~k~~~l~~~p~~~---~~l----~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~-~~~~~~~~  365 (366)
                      +.++..+..++.++++..+...   +.+    +..+....+|++. .+.+++.+|...|++++ .....+.|
T Consensus        66 ~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~-~~~e~~~~R~~~R~~~~~~~~~i~~~  136 (300)
T PHA02530         66 AAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFD-VPVEELVKRNRKRGERAVPEDVLRSM  136 (300)
T ss_pred             HHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeC-CCHHHHHHHHHccCcCCCCHHHHHHH
Confidence            3455667788889998776432   111    1223344456666 58999999999996543 44444433

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.69  E-value=0.00018  Score=55.45  Aligned_cols=47  Identities=30%  Similarity=0.383  Sum_probs=41.2

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL   57 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~   57 (366)
                      ..|++|..|.++|||+++| |++||+|++|||..+.+  .++....|...
T Consensus         9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~   55 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPT   55 (79)
T ss_pred             CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcC
Confidence            4689999999999999999 99999999999999974  46777777654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.65  E-value=0.00015  Score=71.15  Aligned_cols=59  Identities=24%  Similarity=0.529  Sum_probs=50.4

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ   60 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~   60 (366)
                      |+.+....++++|..|.++|||+++| |+.||+|++|||..+.+.+..++...+++..+.
T Consensus        54 G~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~  112 (334)
T TIGR00225        54 GIQVGMDDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGT  112 (334)
T ss_pred             EEEEEEECCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCC
Confidence            44555556789999999999999999 999999999999999998888888888765444

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG1892|consensus

Probab=97.64  E-value=9.6e-05  Score=78.74  Aligned_cols=56  Identities=27%  Similarity=0.391  Sum_probs=52.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      -||||..|.+||+|+..|+|..||+|+.|||.++.|++-+.|+.+|-.++..|+|-
T Consensus       960 lGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~le 1015 (1629)
T KOG1892|consen  960 LGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLE 1015 (1629)
T ss_pred             cceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEe
Confidence            48999999999999999999999999999999999999999999999888887774

>PRK06762 hypothetical protein; Provisional

Probab=97.59  E-value=0.00037  Score=60.88  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++++|+|+|++||||||++..|.+..
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999874

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=97.56  E-value=0.00023  Score=71.33  Aligned_cols=52  Identities=35%  Similarity=0.532  Sum_probs=47.0

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEE
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEM   62 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~   62 (366)
                      +++|..|.++|||+++| |++||+|++|||.++.+.+..++..+|++..++..
T Consensus       103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v  154 (389)
T PLN00049        103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSV  154 (389)
T ss_pred             cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEE
Confidence            79999999999999999 99999999999999999988899999987655543

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.53  E-value=0.00031  Score=53.43  Aligned_cols=47  Identities=34%  Similarity=0.504  Sum_probs=40.4

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL   57 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~   57 (366)
                      ...++|+.+.++|+|.++| |++||+|++|||..+.+  .+++...+...
T Consensus        11 ~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~   57 (79)
T cd00989          11 PIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQEN   57 (79)
T ss_pred             ccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHC
Confidence            3458999999999999999 99999999999999975  46777777664

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.37  E-value=0.00065  Score=52.84  Aligned_cols=54  Identities=28%  Similarity=0.375  Sum_probs=42.4

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      .++++|..+.++|||+++| |++||.|++|||..+.+.  .++...+...  ...+.+.
T Consensus        23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~   78 (90)
T cd00987          23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLT   78 (90)
T ss_pred             CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence            3589999999999999999 999999999999999754  4566666554  3344443

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.36  E-value=0.0012  Score=50.58  Aligned_cols=49  Identities=24%  Similarity=0.344  Sum_probs=40.7

Q ss_pred             EEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc
Q psy16959          4 IRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG   56 (366)
Q Consensus         4 i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~   56 (366)
                      ++....|++|..|.++|||+. | |++||+|++|||..+.+  .+++...+..
T Consensus         3 ~~~~~~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~   51 (79)
T cd00986           3 VDYTYHGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQS   51 (79)
T ss_pred             eEEEecCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHh
Confidence            344556899999999999986 7 99999999999999974  5677777764

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3651|consensus

Probab=97.36  E-value=0.00037  Score=65.97  Aligned_cols=54  Identities=24%  Similarity=0.363  Sum_probs=51.9

Q ss_pred             EEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        11 i~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +||..|..++||.+.|+++.||.|+.|||+++.|.+--+++.+|+-+.+.|+..
T Consensus        32 lYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ih   85 (429)
T KOG3651|consen   32 LYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIH   85 (429)
T ss_pred             EEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEE
Confidence            499999999999999999999999999999999999999999999999999876

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.23  E-value=0.00062  Score=60.35  Aligned_cols=54  Identities=19%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             CChHHHHHHHHcCCeEEEcccchhh-hccccCCCCcEEEEEeCCCHHHHHHHHHhcC
Q psy16959        299 TSLDAIRTVVNAGKICVLNLHPQSL-KILRSSDLKPFVIFVAPPPFELLKQKRIRRG  354 (366)
Q Consensus       299 i~~~~i~~vir~~k~~~l~~~p~~~-~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~  354 (366)
                      ++.++...+-..+.++.|+.++..+ ++++...-.|.+---+  +++.|++..++|.
T Consensus        84 ~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~--~~~~l~~L~~~R~  138 (172)
T COG0703          84 LSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTED--PREELEELLEERQ  138 (172)
T ss_pred             cCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCC--hHHHHHHHHHHHH
Confidence            4677777777788888899998544 7777455566654333  2566777777663

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.20  E-value=0.00089  Score=59.72  Aligned_cols=67  Identities=25%  Similarity=0.308  Sum_probs=41.8

Q ss_pred             CChHHHHHHHHcCCeEEEccc---ch-hhhccc-cCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCchhhhhhC
Q psy16959        299 TSLDAIRTVVNAGKICVLNLH---PQ-SLKILR-SSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTAQAQY  366 (366)
Q Consensus       299 i~~~~i~~vir~~k~~~l~~~---p~-~~~~l~-~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~  366 (366)
                      .-...+....++|-.++.|.-   +. ..+.++ ...-+|.++...-++.+++.+|=..|+|. ..|.|..||
T Consensus        71 ~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR-~~G~a~~q~  142 (174)
T PF07931_consen   71 AMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDR-PIGLAAWQA  142 (174)
T ss_dssp             HHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSS-STTHHHHHT
T ss_pred             HHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCc-chHHHHHHH
Confidence            346788999999988877733   32 234452 23345655555558899999999999985 566676664

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.19  E-value=0.0011  Score=62.07  Aligned_cols=63  Identities=16%  Similarity=0.299  Sum_probs=37.9

Q ss_pred             hHHHHHHHHcCCeEEEcccchh--h-hccc----cCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCchhhhh
Q psy16959        301 LDAIRTVVNAGKICVLNLHPQS--L-KILR----SSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTAQA  364 (366)
Q Consensus       301 ~~~i~~vir~~k~~~l~~~p~~--~-~~l~----~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~~~~~~  364 (366)
                      ...+++.+.++..+++|.....  . ..+.    ..+..-.+|++. .+.+.+.+|...|+.....+...+
T Consensus        58 ~~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~-~p~e~~~~Rn~~R~~~~~~~~i~~  127 (249)
T TIGR03574        58 LYLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLK-APLDTLLRRNIERGEKIPNEVIKD  127 (249)
T ss_pred             HHHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEec-CCHHHHHHHHHhCCCCCCHHHHHH
Confidence            3456677777888888876521  1 1121    223333455665 668899999888887665554443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.17  E-value=0.0005  Score=61.91  Aligned_cols=39  Identities=15%  Similarity=-0.007  Sum_probs=28.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK  143 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr  143 (366)
                      ++.|+|.|+.||||||+++.|.+.....+. ..++++.|+
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~-~~~~~~~p~   41 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGR-DVVFTREPG   41 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCC-ceeEeeCCC
Confidence            468999999999999999999986432222 224455554

>KOG3605|consensus

Probab=97.17  E-value=0.00021  Score=73.59  Aligned_cols=53  Identities=32%  Similarity=0.589  Sum_probs=48.5

Q ss_pred             EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +|+.++++|||+++|+|-.||+|+.|||+++.+++...+...||+.+++..++
T Consensus       676 ViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~Vk  728 (829)
T KOG3605|consen  676 VIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVK  728 (829)
T ss_pred             HHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEE
Confidence            55678899999999999999999999999999999999999999998876654

>PRK00098 GTPase RsgA; Reviewed

Probab=97.13  E-value=0.00043  Score=66.91  Aligned_cols=92  Identities=15%  Similarity=0.174  Sum_probs=61.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceee-------eccCCCCCCCCCC------------CcceeecCHHHHHHHH
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAI-------PHTSRPMKDGEVD------------GQDYHFITRAQFELDI  164 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~-------~~tTr~pr~~E~~------------g~~y~~vs~~ef~~~~  164 (366)
                      .+.++|+|++|+|||||.+.|..........+       .|||+.++..+.+            +..+.+++.+++...+
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f  243 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYF  243 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHH
Confidence            56899999999999999999986422212222       2688766554333            4556678888887777


Q ss_pred             Hh-cceeEEEEEec-ccccchh--hhhHHhcCCCe
Q psy16959        165 LA-RKFIEHGEYEK-SYYGLRT--KLDKLQAGIPT  195 (366)
Q Consensus       165 ~~-g~fle~~~~~g-~~YG~~~--~~~~~~~g~~~  195 (366)
                      .. ..+.....+.+ .+|+.+.  +.+++..|...
T Consensus       244 ~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i~  278 (298)
T PRK00098        244 PEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEIA  278 (298)
T ss_pred             HHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCCC
Confidence            55 56666666666 5666543  44666766654

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.10  E-value=0.0026  Score=56.33  Aligned_cols=24  Identities=17%  Similarity=0.434  Sum_probs=21.7

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +|+|+||+||||||++.+|++..+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999998764

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=97.06  E-value=0.0012  Score=61.59  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=28.4

Q ss_pred             ccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959         87 EILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus        87 ~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ++.+.|.+..- |....+.+|+|+||+||||+|++.+|++..+
T Consensus        27 ~~~~~~~~~~~-~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         27 EIITLEERGSS-SKEKTPFITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             cccccccccCC-ccCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34444544432 1222345678999999999999999998753

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.05  E-value=0.00099  Score=59.02  Aligned_cols=24  Identities=21%  Similarity=0.505  Sum_probs=21.6

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++|+|+||+||||||++..|++..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14531 adenylate kinase; Provisional

Probab=96.99  E-value=0.0021  Score=57.36  Aligned_cols=26  Identities=27%  Similarity=0.608  Sum_probs=22.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ++-|+|+||+||||||++..|++..+
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g   27 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHG   27 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34589999999999999999998753

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.99  E-value=0.01  Score=52.07  Aligned_cols=51  Identities=20%  Similarity=0.339  Sum_probs=38.4

Q ss_pred             ChHHHHHHHHcCCeEEEcccchhh----hccccCCCCcEEEEEeCCCHHHHHHHHHh
Q psy16959        300 SLDAIRTVVNAGKICVLNLHPQSL----KILRSSDLKPFVIFVAPPPFELLKQKRIR  352 (366)
Q Consensus       300 ~~~~i~~vir~~k~~~l~~~p~~~----~~l~~~~~~p~vi~~~~~~~~~l~~~~~~  352 (366)
                      -.+.++.++..++.++.+++-.+.    ++++  ....+++|+.+.||..|-.++..
T Consensus       119 f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik--~~~~v~v~lt~~NR~~i~~~Il~  173 (179)
T COG1618         119 FREAVEEVLKSGKPLIATLHRRSRHPLVQRIK--KLGGVYVFLTPENRNRILNEILS  173 (179)
T ss_pred             HHHHHHHHhcCCCcEEEEEecccCChHHHHhh--hcCCEEEEEccchhhHHHHHHHH
Confidence            367888999999998888887633    3333  34667788999999988877754

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.97  E-value=0.0043  Score=53.94  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.5

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||||++..|++..+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            57899999999999999998753

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14530 adenylate kinase; Provisional

Probab=96.96  E-value=0.002  Score=59.03  Aligned_cols=25  Identities=28%  Similarity=0.512  Sum_probs=21.9

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +-|+|+||+||||||++..|++..+
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3588999999999999999998753

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.91  E-value=0.0023  Score=57.02  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=21.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||||++..|++..+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~   24 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG   24 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999998754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR01351 adk adenylate kinases

Probab=96.90  E-value=0.0018  Score=59.07  Aligned_cols=23  Identities=35%  Similarity=0.719  Sum_probs=20.8

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||+|++..|++..+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g   24 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG   24 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999998754

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>KOG3938|consensus

Probab=96.87  E-value=0.00071  Score=63.06  Aligned_cols=59  Identities=34%  Similarity=0.476  Sum_probs=53.2

Q ss_pred             CcEEEEeC-CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC
Q psy16959          1 GATIRNEG-DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG   59 (366)
Q Consensus         1 G~~i~~~~-~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~   59 (366)
                      |+||..++ +.-||.++.+||.-++--.+++||.|-.|||.++.++.|.+++.+||....
T Consensus       140 GlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~r  199 (334)
T KOG3938|consen  140 GLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPR  199 (334)
T ss_pred             ceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhccc
Confidence            67888776 566999999999999988899999999999999999999999999998743

>PRK14527 adenylate kinase; Provisional

Probab=96.87  E-value=0.0021  Score=57.71  Aligned_cols=27  Identities=22%  Similarity=0.655  Sum_probs=23.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+.+|+++||+||||||++..|++..+
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            567899999999999999999998753

>PRK14529 adenylate kinase; Provisional

Probab=96.79  E-value=0.0063  Score=56.42  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=21.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||+|++.+|++..+
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~   25 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYD   25 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78899999999999999998754

>KOG3552|consensus

Probab=96.78  E-value=0.0018  Score=69.21  Aligned_cols=56  Identities=30%  Similarity=0.405  Sum_probs=51.4

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEee
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG   65 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~~   65 (366)
                      +..|+|..|.+|||++  |+|++||+|+.|||.++...+.+.|+.+++.+..++.++.
T Consensus        74 grPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV  129 (1298)
T KOG3552|consen   74 GRPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTV  129 (1298)
T ss_pred             CCceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEE
Confidence            3678999999999987  4799999999999999999999999999999999998874

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.77  E-value=0.00081  Score=55.26  Aligned_cols=23  Identities=35%  Similarity=0.660  Sum_probs=21.1

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|+|.||+||||||+++.|++..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999875

...

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.75  E-value=0.0013  Score=58.41  Aligned_cols=23  Identities=30%  Similarity=0.296  Sum_probs=21.0

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|+|.|+.||||||+++.|++..
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l   24 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERL   24 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999764

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK14532 adenylate kinase; Provisional

Probab=96.73  E-value=0.0045  Score=55.19  Aligned_cols=23  Identities=35%  Similarity=0.800  Sum_probs=21.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||||++.+|++..+
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g   25 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERG   25 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999998764

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=96.71  E-value=0.0013  Score=60.18  Aligned_cols=53  Identities=15%  Similarity=0.307  Sum_probs=35.7

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccCCccee---------eeccCCCCCCCCCCCcceeecCH
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAA---------IPHTSRPMKDGEVDGQDYHFITR  157 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~---------~~~tTr~pr~~E~~g~~y~~vs~  157 (366)
                      ++++|+||||+|||.++-.|++..+.-.++         +..+|.+|.+.|..++...+++.
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~   63 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDD   63 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES--
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeecc
Confidence            468999999999999999999865432222         34569999999999999888764

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=96.64  E-value=0.0087  Score=54.41  Aligned_cols=56  Identities=13%  Similarity=0.052  Sum_probs=36.0

Q ss_pred             HHHHHHcCCeEEEcccchhhhccc-cCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCc
Q psy16959        304 IRTVVNAGKICVLNLHPQSLKILR-SSDLKPFVIFVAPPPFELLKQKRIRRGDNFKT  359 (366)
Q Consensus       304 i~~vir~~k~~~l~~~p~~~~~l~-~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~  359 (366)
                      +++.++.|..+++++....-..+. ...-..+++++..++.+.+++|+..|+..-..
T Consensus        90 a~~~l~~G~sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~  146 (197)
T PRK12339         90 IRRALLNGEDLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTHK  146 (197)
T ss_pred             HHHHHHcCCCEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhcccC
Confidence            566888999998886542222221 11112456667667899999999999864433

>KOG3079|consensus

Probab=96.60  E-value=0.032  Score=49.91  Aligned_cols=30  Identities=17%  Similarity=0.389  Sum_probs=25.4

Q ss_pred             CCCCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        100 RSNEKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       100 ~~~~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+.++.+|.++|++||||.|+..++++..+
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~   33 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYG   33 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcC
Confidence            345667888999999999999999998754

>PRK07261 topology modulation protein; Provisional

Probab=96.59  E-value=0.0063  Score=53.86  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhcc
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+|+|++|||||||+..|++..
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998653

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.55  E-value=0.015  Score=45.91  Aligned_cols=62  Identities=26%  Similarity=0.436  Sum_probs=42.7

Q ss_pred             CcEEEEeCCeEEEEEEcCC--------chhcccC-CCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKG--------GLADRTG-LLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~g--------s~A~~~G-~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+.+...+++.-|++|.+|        ||..+.| .+++||.|++|||+.+...  .....+|.+..+..+++
T Consensus         4 GAd~~~~~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~L   74 (88)
T PF14685_consen    4 GADFSYDNGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLL   74 (88)
T ss_dssp             SEEEEEETTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEE
T ss_pred             ceEEEEcCCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEE
Confidence            6677777899999999987        5555555 4679999999999999765  44677888877766655

>KOG3542|consensus

Probab=96.53  E-value=0.0016  Score=67.54  Aligned_cols=50  Identities=38%  Similarity=0.531  Sum_probs=47.1

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT   58 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~   58 (366)
                      +-||||..|.||+.|.+.| |+.||+|++|||++..+++...|..+|++..
T Consensus       561 GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnt  610 (1283)
T KOG3542|consen  561 GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNT  610 (1283)
T ss_pred             cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCc
Confidence            4589999999999999999 9999999999999999999999999998754

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.53  E-value=0.011  Score=52.38  Aligned_cols=25  Identities=32%  Similarity=0.630  Sum_probs=22.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++.|+|+||+|+||||++..|++..
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHc
Confidence            4579999999999999999999864

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.47  E-value=0.0049  Score=56.40  Aligned_cols=23  Identities=26%  Similarity=0.615  Sum_probs=21.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||||++..|++..+
T Consensus         3 I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998764

>PRK06761 hypothetical protein; Provisional

Probab=96.46  E-value=0.0051  Score=59.00  Aligned_cols=64  Identities=14%  Similarity=0.172  Sum_probs=44.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccC--CCCCCCCCCCcceeecCHHHHHHHHHhcce
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTS--RPMKDGEVDGQDYHFITRAQFELDILARKF  169 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tT--r~pr~~E~~g~~y~~vs~~ef~~~~~~g~f  169 (366)
                      .++|+|.||+||||||+++.|++.....+..+...+  ..+.+.+..+..+  ++.+++...+.....
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~~~~   68 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSNYPD   68 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccC--CCHHHHHHHHHhhhH
Confidence            468999999999999999999987544344444332  2235556665433  588888888766553

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.42  E-value=0.017  Score=51.22  Aligned_cols=53  Identities=19%  Similarity=0.200  Sum_probs=33.3

Q ss_pred             CChHHHHHHHH---cCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959        299 TSLDAIRTVVN---AGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNF  357 (366)
Q Consensus       299 i~~~~i~~vir---~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~  357 (366)
                      ++.+.++..+.   ....++++.+-...  +   + .+-+++++-.+.+.|++|+..||-+.
T Consensus        52 vD~d~~~~~le~~~~~~~~Ivd~H~~hl--~---~-~~dlVvVLR~~p~~L~~RLk~RGy~~  107 (180)
T COG1936          52 VDVDKLRKRLEELLREGSGIVDSHLSHL--L---P-DCDLVVVLRADPEVLYERLKGRGYSE  107 (180)
T ss_pred             eeHHHHHHHHHHHhccCCeEeechhhhc--C---C-CCCEEEEEcCCHHHHHHHHHHcCCCH
Confidence            56666666665   34556676655322  1   1 23444444488999999999999653

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=96.35  E-value=0.0076  Score=61.14  Aligned_cols=53  Identities=26%  Similarity=0.348  Sum_probs=41.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |+.||+|++|||..+.+.  .+....+...  ...+.+.
T Consensus       257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~  311 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLG  311 (428)
T ss_pred             CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence            689999999999999999 999999999999999754  5555555432  3344443

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK13808 adenylate kinase; Provisional

Probab=96.32  E-value=0.0073  Score=59.20  Aligned_cols=23  Identities=35%  Similarity=0.775  Sum_probs=21.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||+|++.+|++.++
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~yg   25 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYG   25 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78899999999999999998764

>PRK02496 adk adenylate kinase; Provisional

Probab=96.31  E-value=0.0096  Score=52.94  Aligned_cols=22  Identities=27%  Similarity=0.597  Sum_probs=20.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhcc
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++|+||+||||||++..|++..
T Consensus         4 i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999999865

>PRK08118 topology modulation protein; Reviewed

Probab=96.30  E-value=0.0063  Score=53.71  Aligned_cols=23  Identities=35%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+|||||||++.|++..+
T Consensus         4 I~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998753

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.26  E-value=0.01  Score=55.25  Aligned_cols=23  Identities=30%  Similarity=0.661  Sum_probs=21.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||+|++..|++..+
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~g   31 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKEN   31 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998754

>KOG3129|consensus

Probab=96.16  E-value=0.011  Score=53.45  Aligned_cols=51  Identities=27%  Similarity=0.377  Sum_probs=39.5

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCC-HHHHHHHHHcCCCcE
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS-IHIVCDILVGLTGQE   61 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~-~~~a~~~Lk~~~~~v   61 (366)
                      .++|..|.++|||+.+| |+.||.|+.+.++.-.+.. ..++....+...+..
T Consensus       140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~  191 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQI  191 (231)
T ss_pred             eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcc
Confidence            57999999999999999 9999999998776666554 555555555555444

>PLN02674 adenylate kinase

Probab=96.09  E-value=0.011  Score=55.65  Aligned_cols=25  Identities=24%  Similarity=0.550  Sum_probs=22.0

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ..|+|+||+||||+|++.+|++..+
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~   56 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYC   56 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcC
Confidence            3478999999999999999998764

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=96.06  E-value=0.07  Score=48.11  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             CcEEEeCCCCCChHHHHHHHHh
Q psy16959        105 RPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..|.|+|+.||||||++..|.+
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~   24 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE   24 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999987

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.06  E-value=0.0032  Score=53.14  Aligned_cols=56  Identities=23%  Similarity=0.280  Sum_probs=34.3

Q ss_pred             hHHHHHHHHcCCeEEEcccchhh---hcc----ccCCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959        301 LDAIRTVVNAGKICVLNLHPQSL---KIL----RSSDLKPFVIFVAPPPFELLKQKRIRRGDNF  357 (366)
Q Consensus       301 ~~~i~~vir~~k~~~l~~~p~~~---~~l----~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~  357 (366)
                      .+.++..++.|..++++.+-...   ..+    +..++...+|++. .+.+.+.+|+..|..+-
T Consensus        60 ~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~-~~~~~~~~R~~~R~~~~  122 (143)
T PF13671_consen   60 NAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLD-APEETLRERLAQRNREG  122 (143)
T ss_dssp             HHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEEC-HHHHHHHHHHHTTHCCC
T ss_pred             HHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEE-CCHHHHHHHHHhcCCcc
Confidence            34567778888888887554221   122    1233344555555 67899999999998764

...

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.06  E-value=0.0038  Score=51.27  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             EEEeCCCCCChHHHHHHHHhcc
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+|.|++|||||||++.|.++.
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999875

...

>PRK10139 serine endoprotease; Provisional

Probab=96.05  E-value=0.013  Score=60.09  Aligned_cols=53  Identities=23%  Similarity=0.327  Sum_probs=44.0

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||.|++|||..+.+  .++....++...+.+.+.
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~  442 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQ  442 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEE
Confidence            478999999999999999 99999999999999965  477788887655544443

>PRK13948 shikimate kinase; Provisional

Probab=96.05  E-value=0.017  Score=51.91  Aligned_cols=26  Identities=15%  Similarity=0.115  Sum_probs=23.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++.|+|+|..||||||+.+.|++..
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~l   34 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRAL   34 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999999875

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.98  E-value=0.0063  Score=53.55  Aligned_cols=24  Identities=25%  Similarity=0.562  Sum_probs=21.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.++|+|+||||||||.+.|...
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            489999999999999999999865

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=95.95  E-value=0.0061  Score=54.53  Aligned_cols=22  Identities=32%  Similarity=0.792  Sum_probs=20.5

Q ss_pred             EEEeCCCCCChHHHHHHHHhcc
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+|+||+||||+|++++|++..
T Consensus         3 iiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999883

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=95.94  E-value=0.015  Score=58.93  Aligned_cols=53  Identities=30%  Similarity=0.471  Sum_probs=43.9

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||.|++|||..+.+  .++...+++..  .+.+.+.
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~  416 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALL  416 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEE
Confidence            589999999999999999 99999999999999964  57788888754  3444443

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK00625 shikimate kinase; Provisional

Probab=95.93  E-value=0.028  Score=50.01  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .|+|+|.+||||||+++.|++..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999875

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.93  E-value=0.013  Score=52.01  Aligned_cols=51  Identities=16%  Similarity=0.315  Sum_probs=37.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCC--CCcceeecCHHHHHHHHH
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEV--DGQDYHFITRAQFELDIL  165 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~--~g~~y~~vs~~ef~~~~~  165 (366)
                      ..-.+.|+||||+|||+|.+.++....            |..|++  .|.++...+.+++.+.++
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~Lis------------p~~G~l~f~Ge~vs~~~pea~Rq~Vs   80 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASLIS------------PTSGTLLFEGEDVSTLKPEAYRQQVS   80 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhccC------------CCCceEEEcCccccccChHHHHHHHH
Confidence            445789999999999999999987521            333432  677777788888877654

>PRK10942 serine endoprotease; Provisional

Probab=95.90  E-value=0.019  Score=59.07  Aligned_cols=53  Identities=26%  Similarity=0.305  Sum_probs=44.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|+|+++| |++||.|++|||..+.+  .++...+++.....+.+.
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~  460 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALN  460 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEE
Confidence            479999999999999999 99999999999999976  578888887755554443

>PRK13946 shikimate kinase; Provisional

Probab=95.88  E-value=0.023  Score=50.77  Aligned_cols=26  Identities=31%  Similarity=0.468  Sum_probs=23.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++.|+|+|.+|||||+++..|++..
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~L   34 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATML   34 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            56789999999999999999999875

>KOG3605|consensus

Probab=95.86  E-value=0.0043  Score=64.30  Aligned_cols=52  Identities=27%  Similarity=0.533  Sum_probs=48.4

Q ss_pred             EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +|=.++.||.|+|.| +++|.+|++|||++|...+|+.++++|-.+.|.++.+
T Consensus       759 iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMK  810 (829)
T KOG3605|consen  759 IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMK  810 (829)
T ss_pred             EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhh
Confidence            566788999999998 9999999999999999999999999999999988776

>PRK14526 adenylate kinase; Provisional

Probab=95.81  E-value=0.023  Score=52.25  Aligned_cols=22  Identities=27%  Similarity=0.676  Sum_probs=20.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhcc
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++|+||+||||+|++..|++..
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~   24 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNEL   24 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999764

>TIGR00054 RIP metalloprotease RseP

Probab=95.80  E-value=0.017  Score=58.55  Aligned_cols=47  Identities=28%  Similarity=0.403  Sum_probs=40.9

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG   59 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~   59 (366)
                      ++.|..|.++|||+++| |++||+|++|||..+.+  .++....++...+
T Consensus       204 g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~  250 (420)
T TIGR00054       204 EPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKENPG  250 (420)
T ss_pred             CcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCC
Confidence            57899999999999999 99999999999999965  5788888876544

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10898 serine endoprotease; Provisional

Probab=95.74  E-value=0.02  Score=56.66  Aligned_cols=44  Identities=20%  Similarity=0.320  Sum_probs=37.5

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHH
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV   55 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk   55 (366)
                      .|++|..|.++|||+++| |+.||+|++|||..+.+.  ++....+.
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~  322 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVA  322 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHH
Confidence            689999999999999999 999999999999999654  44444554

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=95.70  E-value=0.02  Score=56.63  Aligned_cols=53  Identities=23%  Similarity=0.347  Sum_probs=42.1

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~   64 (366)
                      .|++|..|.++|||+++| |++||+|++|||..+.+.  ++....+..  ..+++.+.
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~  332 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVT  332 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence            589999999999999999 999999999999999654  566666654  23444443

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PLN02924 thymidylate kinase

Probab=95.67  E-value=0.034  Score=51.43  Aligned_cols=40  Identities=20%  Similarity=0.107  Sum_probs=28.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK  143 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr  143 (366)
                      ++..|+|-|.-||||||++..|++....-+..+ ..|+.|.
T Consensus        15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep~   54 (220)
T PLN02924         15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFPD   54 (220)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCCC
Confidence            456799999999999999999998654333333 3445443

>PRK10139 serine endoprotease; Provisional

Probab=95.66  E-value=0.022  Score=58.40  Aligned_cols=46  Identities=17%  Similarity=0.269  Sum_probs=40.0

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG   56 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~   56 (366)
                      ..|++|..|.++|||+++| |++||+|++|||..+.+.  +++...+..
T Consensus       289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~  334 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIAT  334 (455)
T ss_pred             CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHh
Confidence            3589999999999999999 999999999999999754  677776654

>PLN02459 probable adenylate kinase

Probab=95.64  E-value=0.021  Score=54.11  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.7

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ++|+||+||||+|++..|++..+
T Consensus        32 ii~~G~PGsGK~T~a~~la~~~~   54 (261)
T PLN02459         32 WVFLGCPGVGKGTYASRLSKLLG   54 (261)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            77899999999999999998754

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.64  E-value=0.011  Score=44.29  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|+|+|++|||||++++.|.+..
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999874

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=95.64  E-value=0.19  Score=45.53  Aligned_cols=22  Identities=23%  Similarity=0.069  Sum_probs=19.2

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +|.|+|+.||||||++..|.+.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~   22 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEEL   22 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHHC
Confidence            4789999999999999988754

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=95.64  E-value=0.027  Score=57.56  Aligned_cols=47  Identities=19%  Similarity=0.421  Sum_probs=39.7

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG   59 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~   59 (366)
                      ++.|..|.++|||+++| |++||+|++|||..+.  +.++....++...+
T Consensus       222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~  268 (449)
T PRK10779        222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPG  268 (449)
T ss_pred             CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCC
Confidence            37899999999999999 9999999999999996  45677777766443

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=95.62  E-value=0.0056  Score=49.99  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=25.7

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      |+|+|++|+|||||...|......-....+.+|+.+
T Consensus         2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~   37 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP   37 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE
T ss_pred             EEEECCCCCCHHHHHHHHhccccccccccccceeee
Confidence            689999999999999999964211233345666665

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK08233 hypothetical protein; Provisional

Probab=95.62  E-value=0.0098  Score=52.30  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+|.|.|++||||||++..|++...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5788999999999999999998643

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.62  E-value=0.011  Score=48.20  Aligned_cols=25  Identities=28%  Similarity=0.628  Sum_probs=21.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..++|+||+|+|||+++..|+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcc
Confidence            3568999999999999999999763

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK10942 serine endoprotease; Provisional

Probab=95.61  E-value=0.024  Score=58.41  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=39.0

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG   56 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~   56 (366)
                      .|++|..|.++|||+++| |+.||+|++|||..+.+.  ++....+..
T Consensus       311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~  355 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGT  355 (473)
T ss_pred             CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHh
Confidence            589999999999999999 999999999999999765  566666644

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.53  E-value=0.013  Score=50.18  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +++|+|++||||||+++.|.+.++
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~   24 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG   24 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC
Confidence            478999999999999999998753

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=95.45  E-value=0.029  Score=53.17  Aligned_cols=46  Identities=22%  Similarity=0.357  Sum_probs=39.5

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL   57 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~   57 (366)
                      .|+.|..+.++|+|++.| |+.||+|++|||.++.+.  +++..++...
T Consensus       191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~  236 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQML  236 (259)
T ss_pred             eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhc
Confidence            589999999999999999 999999999999999754  5566666553

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>TIGR00235 udk uridine kinase

Probab=95.45  E-value=0.012  Score=53.62  Aligned_cols=28  Identities=14%  Similarity=0.200  Sum_probs=23.6

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..+.+|.|+||+|||||||++.|....
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l   30 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQL   30 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455788999999999999999998753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=95.43  E-value=0.066  Score=46.42  Aligned_cols=57  Identities=14%  Similarity=0.239  Sum_probs=32.9

Q ss_pred             HHHHHHcCCeEEEcccc-h--hhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCchh
Q psy16959        304 IRTVVNAGKICVLNLHP-Q--SLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGT  361 (366)
Q Consensus       304 i~~vir~~k~~~l~~~p-~--~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~~~  361 (366)
                      .......+++.++...- +  =.++|+...-. +.+.-+.-+++.+-+|...|..+|-..+
T Consensus        60 ~~~~~~~~~~~vi~CSALKr~YRD~LR~~~~~-~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~  119 (161)
T COG3265          60 AASLAQKNKHVVIACSALKRSYRDLLREANPG-LRFVYLDGDFDLILERMKARKGHFMPAS  119 (161)
T ss_pred             HHHhhcCCCceEEecHHHHHHHHHHHhccCCC-eEEEEecCCHHHHHHHHHhcccCCCCHH
Confidence            33344456765555443 1  12445533112 3333344789999999999999996543

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.42  E-value=0.013  Score=50.95  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=22.7

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..|+|+|++|||||+++..|++..
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999999875

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=95.41  E-value=0.0075  Score=61.51  Aligned_cols=39  Identities=41%  Similarity=0.682  Sum_probs=36.3

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCE
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGI   40 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~   40 (366)
                      |+.+..++++..|..|.+||||..+| |.+||.|+.|||.
T Consensus       454 Gl~v~~~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~  492 (558)
T COG3975         454 GLKVKSEGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI  492 (558)
T ss_pred             ceEecccCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence            56677788899999999999999999 9999999999998

>PRK06217 hypothetical protein; Validated

Probab=95.33  E-value=0.016  Score=51.69  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+|++||||||++.+|++..+
T Consensus         4 I~i~G~~GsGKSTla~~L~~~l~   26 (183)
T PRK06217          4 IHITGASGSGTTTLGAALAERLD   26 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999998754

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.32  E-value=0.0097  Score=54.03  Aligned_cols=24  Identities=25%  Similarity=0.556  Sum_probs=20.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |++++|+||+||||||.+.+|+..
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~   24 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAAR   24 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHH
Confidence            578999999999999998888753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK06547 hypothetical protein; Provisional

Probab=95.29  E-value=0.017  Score=51.32  Aligned_cols=26  Identities=15%  Similarity=0.249  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+.+|.|.|++||||||++..|++..
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            44567888999999999999999864

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.26  E-value=0.019  Score=54.30  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|||||||.+.|+.-
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            5678999999999999999999874

>PLN02199 shikimate kinase

Probab=95.18  E-value=0.042  Score=53.02  Aligned_cols=26  Identities=15%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..+.|+|+|..|+|||++...|++..
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~L  126 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVL  126 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999864

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.16  E-value=0.015  Score=49.05  Aligned_cols=23  Identities=35%  Similarity=0.762  Sum_probs=20.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|+|+||+|+|||+|+..|++..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.13  E-value=0.023  Score=46.81  Aligned_cols=23  Identities=35%  Similarity=0.618  Sum_probs=20.8

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|.||+|+|||+++..+++...
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            68999999999999999998753

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK03839 putative kinase; Provisional

Probab=95.09  E-value=0.017  Score=51.19  Aligned_cols=24  Identities=25%  Similarity=0.511  Sum_probs=21.5

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .|+|+|++||||||++.+|++..+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~   25 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999998753

>PRK05480 uridine/cytidine kinase; Provisional

Probab=95.04  E-value=0.019  Score=52.15  Aligned_cols=26  Identities=15%  Similarity=0.248  Sum_probs=22.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+.+|.|.|++|||||||+..|.+..
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45578899999999999999998764

>KOG3354|consensus

Probab=95.01  E-value=0.11  Score=45.56  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..|+++|++|+||||+.+.|.++.
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l   36 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEEL   36 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHh
Confidence            4579999999999999999999875

>PRK06696 uridine kinase; Validated

Probab=95.00  E-value=0.02  Score=52.83  Aligned_cols=27  Identities=15%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..+.+|.|.|++|||||||+..|++..
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l   46 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEI   46 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            345678899999999999999999864

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=94.98  E-value=0.031  Score=57.12  Aligned_cols=41  Identities=24%  Similarity=0.392  Sum_probs=34.8

Q ss_pred             EEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHH
Q psy16959         11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL   54 (366)
Q Consensus        11 i~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~L   54 (366)
                      .+|..|.++|||+++| |+.||+|++|||..+.+.  ++....+
T Consensus       128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v  168 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLAL  168 (449)
T ss_pred             ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHH
Confidence            3689999999999999 999999999999999876  4444444

>TIGR00152 dephospho-CoA kinase

Probab=94.96  E-value=0.3  Score=43.57  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.5

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .|.|+|..||||||++..|.+..
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~   23 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY   23 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc
Confidence            47899999999999999998763

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=94.94  E-value=0.025  Score=41.72  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             CcEEEeCCCCCChHHHHHHHH
Q psy16959        105 RPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      ...+|+||+|||||||+..+.
T Consensus        24 ~~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999998875

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.90  E-value=0.025  Score=46.57  Aligned_cols=26  Identities=23%  Similarity=0.603  Sum_probs=22.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..+.++|+||+|+|||+++..+++..
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998763

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=94.90  E-value=0.022  Score=48.04  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=21.0

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|+|+|++||||||++..|++..
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999874

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.023  Score=55.01  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=27.0

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTS  139 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tT  139 (366)
                      .=|+|+||||||||-|++.|++..+.-.-..++||
T Consensus        98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt  132 (408)
T COG1219          98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT  132 (408)
T ss_pred             ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence            35899999999999999999987654333455554

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=94.89  E-value=0.015  Score=52.32  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.0

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +|-|.||+||||||++.+|....+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            467999999999999999987644

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=94.84  E-value=0.065  Score=51.17  Aligned_cols=64  Identities=19%  Similarity=0.273  Sum_probs=36.4

Q ss_pred             hHHHHHHHHcCCeEEEcccc--hhh-hcc----ccCCCCcEEEEEeCCCHHHHHHHHHhcCCC--CCchhhhhh
Q psy16959        301 LDAIRTVVNAGKICVLNLHP--QSL-KIL----RSSDLKPFVIFVAPPPFELLKQKRIRRGDN--FKTGTAQAQ  365 (366)
Q Consensus       301 ~~~i~~vir~~k~~~l~~~p--~~~-~~l----~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~--~~~~~~~~~  365 (366)
                      .+++++.+.+..++++|..-  .+. ..+    +.....-.+|++. .+.+...++-..|+..  ...++..++
T Consensus        61 ~s~v~r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~-~~~e~~~~~N~~R~~~~~~~~e~i~~m  133 (270)
T PF08433_consen   61 KSAVERALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCD-CPLETCLQRNSKRPEPERYPEETIDDM  133 (270)
T ss_dssp             HHHHHHHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHTT-S--S-HHHHHHH
T ss_pred             HHHHHHhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEEC-CCHHHHHHhhhccCCCCCCCHHHHHHH
Confidence            55677777777888888766  343 111    1234444667777 6688888888888887  777776654

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=94.80  E-value=0.024  Score=49.92  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..|+|.|++||||||++..|++.
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~   30 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999875

>PHA00729 NTP-binding motif containing protein

Probab=94.79  E-value=0.032  Score=51.75  Aligned_cols=55  Identities=15%  Similarity=0.127  Sum_probs=36.7

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC-Cc-ceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHh
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD-RF-AAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILA  166 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~-~~-~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~  166 (366)
                      -|+|+|++|+|||+|+..|++... .+ ....+      ......+....|++.+++...+..
T Consensus        19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~------~~~~d~~~~~~fid~~~Ll~~L~~   75 (226)
T PHA00729         19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTK------DDAWQYVQNSYFFELPDALEKIQD   75 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhcccccch------hhHHhcCCcEEEEEHHHHHHHHHH
Confidence            488999999999999999987632 11 11111      111234567788898888777653

>smart00763 AAA_PrkA PrkA AAA domain

Probab=94.78  E-value=0.021  Score=56.46  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=23.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+++++|+||+|+|||||+..|++...
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457899999999999999999987544

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PTZ00301 uridine kinase; Provisional

Probab=94.76  E-value=0.021  Score=52.48  Aligned_cols=23  Identities=17%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+|.|.||||||||||+..|.+.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~   26 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSE   26 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHH
Confidence            35679999999999999988754

>PF05729 NACHT: NACHT domain

Probab=94.73  E-value=0.023  Score=48.54  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|.|++|+|||+++..++..
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHH
Confidence            68999999999999999998854

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.65  E-value=0.027  Score=51.80  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..-+++|+||||||||||...|..
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            567899999999999999998864

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=94.64  E-value=0.032  Score=47.58  Aligned_cols=23  Identities=30%  Similarity=0.392  Sum_probs=20.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .|+|+|++|+|||++++.|++..
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999765

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=94.64  E-value=0.14  Score=53.47  Aligned_cols=26  Identities=12%  Similarity=0.393  Sum_probs=23.0

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.+|+++|++||||||++.+++..
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~  392 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQP  392 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998875

Note that the EC number for the kinase function is: 2.7.1.78

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.60  E-value=0.028  Score=50.54  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.3

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|.|+||+||||||++..|....
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=94.53  E-value=0.63  Score=42.22  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=19.5

Q ss_pred             cEEEeCCCCCChHHHHHHHHh
Q psy16959        106 PIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      +|.|+|+.||||||+++.|++
T Consensus         3 ~igitG~igsGKst~~~~l~~   23 (200)
T PRK14734          3 RIGLTGGIGSGKSTVADLLSS   23 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999986

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.53  E-value=0.033  Score=45.18  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=20.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhcc
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+++|++|||||+|..+|+...
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            6899999999999999999763

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=94.51  E-value=0.024  Score=46.93  Aligned_cols=25  Identities=36%  Similarity=0.703  Sum_probs=18.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.++|.||+|+|||+++.++++.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999875

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=94.51  E-value=0.031  Score=45.85  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=20.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHH
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      ....++|+||||+|||||+..+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            34679999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01895 EngA2 EngA2 subfamily

Probab=94.48  E-value=0.036  Score=47.32  Aligned_cols=37  Identities=30%  Similarity=0.538  Sum_probs=25.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      -|+|+|++|+|||+|+.+|...........+.+|+..
T Consensus         4 ~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~   40 (174)
T cd01895           4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS   40 (174)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc
Confidence            4789999999999999999875322222334455444

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=94.47  E-value=0.032  Score=51.79  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=21.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..-.+.|+||||||||||...|.-
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999863

>COG1162 Predicted GTPases [General function prediction only]

Probab=94.45  E-value=0.026  Score=54.40  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+++.+|+|+||||||||..+|.-
T Consensus       163 ~~~~svl~GqSGVGKSSLiN~L~p  186 (301)
T COG1162         163 AGKITVLLGQSGVGKSTLINALLP  186 (301)
T ss_pred             cCCeEEEECCCCCcHHHHHHhhCc
Confidence            457899999999999999999974

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=94.43  E-value=0.18  Score=50.45  Aligned_cols=34  Identities=21%  Similarity=0.467  Sum_probs=24.9

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccCCcceeeeccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTS  139 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tT  139 (366)
                      -.||.||+|+|||||+..|+...+.-...++.+|
T Consensus        50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~   83 (436)
T COG2256          50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT   83 (436)
T ss_pred             eeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence            4689999999999999999986443333344443

>PRK13975 thymidylate kinase; Provisional

Probab=94.38  E-value=0.042  Score=49.06  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=23.3

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +..|+|.|+.||||||+++.|++...
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998754

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=94.35  E-value=0.028  Score=56.76  Aligned_cols=40  Identities=25%  Similarity=0.427  Sum_probs=33.8

Q ss_pred             EEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHH
Q psy16959         13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV   55 (366)
Q Consensus        13 I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk   55 (366)
                      |..|.++|+|+++| |++||+|++|||..+...  .+....+.
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw--~D~~~~l~   41 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDL--IDYQFLCA   41 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHhc
Confidence            67899999999999 999999999999999655  55555553

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PF13173 AAA_14: AAA domain

Probab=94.34  E-value=0.039  Score=46.16  Aligned_cols=24  Identities=33%  Similarity=0.736  Sum_probs=21.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++++|.||.+||||+++.++++.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~   25 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKD   25 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            468899999999999999999876

>PRK13947 shikimate kinase; Provisional

Probab=94.17  E-value=0.038  Score=48.20  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.6

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      -|+|+|++|||||+++..|++..+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998753

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=94.12  E-value=0.061  Score=49.58  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=21.5

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+|-|.|+|||||||++++|.+...
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~   33 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLG   33 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            4566999999999999999998754

>PRK04040 adenylate kinase; Provisional

Probab=94.10  E-value=0.044  Score=49.35  Aligned_cols=25  Identities=20%  Similarity=0.515  Sum_probs=22.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++.|+|+|++||||||++..|++..
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999999874

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.08  E-value=0.041  Score=48.85  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.6

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++|+||||+|||.+++.|++..
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l   27 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELL   27 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999864

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK15453 phosphoribulokinase; Provisional

Probab=94.02  E-value=0.069  Score=51.24  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +.+|.|+|.|||||||++..|++..
T Consensus         5 ~piI~ItG~SGsGKTTva~~l~~if   29 (290)
T PRK15453          5 HPIIAVTGSSGAGTTTVKRAFEKIF   29 (290)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999998643

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=93.97  E-value=0.068  Score=45.54  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=22.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ...+|+|.|+.|+|||++++.+++..
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=93.91  E-value=0.045  Score=50.56  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.5

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +|-|.||+||||||+++.|...
T Consensus         1 IigI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHH
Confidence            4679999999999999999865

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=93.88  E-value=0.047  Score=53.63  Aligned_cols=25  Identities=24%  Similarity=0.510  Sum_probs=22.0

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...-.++|+|||||||||+...++-
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3567899999999999999999984

>PRK00889 adenylylsulfate kinase; Provisional

Probab=93.88  E-value=0.053  Score=47.71  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+|+|+|++||||||++..|+..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~   27 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEK   27 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999875

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=93.84  E-value=0.11  Score=50.60  Aligned_cols=28  Identities=29%  Similarity=0.424  Sum_probs=24.3

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..+..|+|+|++|||||+++..|++..
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~L  157 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARL  157 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            3456789999999999999999999875

>TIGR00054 RIP metalloprotease RseP

Probab=93.84  E-value=0.082  Score=53.63  Aligned_cols=52  Identities=29%  Similarity=0.452  Sum_probs=40.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEE
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMT   63 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l   63 (366)
                      .+.+|..|.++|||+++| |++||.|++|||..+.+.  .+....+....+++.+
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~  179 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMV  179 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceE
Confidence            467899999999999999 999999999999998765  4555444433355443

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=93.84  E-value=0.042  Score=44.61  Aligned_cols=21  Identities=43%  Similarity=0.844  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |.|.||+|+|||+++..|++.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~   21 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKD   21 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999999875

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd04163 Era Era subfamily

Probab=93.82  E-value=0.048  Score=45.98  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=20.4

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..|+++|++|+||||+.+.|...
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            35889999999999999999865

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG0745|consensus

Probab=93.82  E-value=0.055  Score=54.42  Aligned_cols=34  Identities=29%  Similarity=0.331  Sum_probs=27.7

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccCCcceeeeccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTS  139 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tT  139 (366)
                      =|+|+||||||||-|++.|++-.+.-...+++||
T Consensus       228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTt  261 (564)
T KOG0745|consen  228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTT  261 (564)
T ss_pred             cEEEECCCCCchhHHHHHHHHHhCCCeEEecccc
Confidence            4899999999999999999986655455567775

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=93.79  E-value=0.044  Score=47.97  Aligned_cols=27  Identities=26%  Similarity=0.497  Sum_probs=17.7

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.++|.|++|+|||+|..++.+.
T Consensus        21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~   47 (185)
T PF13191_consen   21 SGSPRNLLLTGESGSGKTSLLRALLDR   47 (185)
T ss_dssp             S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            345688999999999999999988754

>PRK14528 adenylate kinase; Provisional

Probab=93.77  E-value=0.058  Score=48.31  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=21.2

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      -|+|+||+||||+|+++.|++..+
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~   26 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLS   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998753

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.74  E-value=0.092  Score=49.60  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..-.++|+|||||||||+.+.+-+
T Consensus        26 ~gef~vliGpSGsGKTTtLkMINr   49 (309)
T COG1125          26 EGEFLVLIGPSGSGKTTTLKMINR   49 (309)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhc
Confidence            456789999999999999988765

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=93.69  E-value=0.056  Score=49.98  Aligned_cols=26  Identities=23%  Similarity=0.425  Sum_probs=22.1

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.++.|.||+|||||||++.|+..
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34557789999999999999999875

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=93.68  E-value=0.054  Score=51.95  Aligned_cols=25  Identities=24%  Similarity=0.504  Sum_probs=21.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+++++|+||+||||||++..|+..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~  217 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAAR  217 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999864

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=93.66  E-value=0.056  Score=48.77  Aligned_cols=45  Identities=20%  Similarity=0.205  Sum_probs=29.3

Q ss_pred             HcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCC
Q psy16959        309 NAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD  355 (366)
Q Consensus       309 r~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~  355 (366)
                      ....+++++|.-. .......+..-..||+. .+.+...+|+.+|..
T Consensus       109 ~~~~iViVEG~~l-~~~~~l~~l~D~~Ifvd-~~~d~~~~Rr~~R~~  153 (187)
T cd02024         109 EDLHILIVDGFLL-YNYKPLVDLFDIRYFLR-VPYETCKRRREARTG  153 (187)
T ss_pred             CCCcEEEEechHh-cCCHHHHhhcCceeEec-CCHHHHHHHHHHcCC
Confidence            3445777777742 21112225678899998 568888889988853

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=93.63  E-value=0.053  Score=49.09  Aligned_cols=22  Identities=14%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +|+|+||+||||||++..|...
T Consensus         3 lilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988754

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=93.62  E-value=0.075  Score=46.46  Aligned_cols=25  Identities=20%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ..++|+|++|+|||++++.|++..+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg   27 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALG   27 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999998753

>TIGR00436 era GTP-binding protein Era

Probab=93.62  E-value=0.057  Score=51.23  Aligned_cols=36  Identities=22%  Similarity=0.458  Sum_probs=27.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      |+|+|+++||||||++.|...........+.|||.+
T Consensus         3 V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~   38 (270)
T TIGR00436         3 VAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR   38 (270)
T ss_pred             EEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc
Confidence            789999999999999999975322234456788765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=93.62  E-value=0.057  Score=48.11  Aligned_cols=23  Identities=17%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|.|.|++|||||||+..|++..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l   23 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQL   23 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998763

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.60  E-value=0.12  Score=48.46  Aligned_cols=24  Identities=17%  Similarity=0.429  Sum_probs=21.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..-.|.|+||||+|||||.+.++-
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999985

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=93.59  E-value=0.053  Score=48.64  Aligned_cols=24  Identities=25%  Similarity=0.628  Sum_probs=19.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+-|+|+||+|||||+|..+|...
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~   26 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNG   26 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHS
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcC
Confidence            356899999999999999999876

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=93.58  E-value=0.06  Score=47.91  Aligned_cols=25  Identities=12%  Similarity=0.251  Sum_probs=21.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..+++|+||+|+||||++..|+...
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l   27 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALF   27 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhc
Confidence            3578999999999999999998763

>PRK06620 hypothetical protein; Validated

Probab=93.54  E-value=0.065  Score=49.29  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=22.1

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ++++|.||+|+|||+|++.+++.++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~   69 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN   69 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC
Confidence            6799999999999999998877654

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=93.54  E-value=0.055  Score=48.20  Aligned_cols=25  Identities=12%  Similarity=0.187  Sum_probs=21.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++++.|+|++|||||||+.+|+..
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3457789999999999999999865

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=93.53  E-value=0.04  Score=47.29  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=19.0

Q ss_pred             EeCCCCCChHHHHHHHHhccC
Q psy16959        109 LIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       109 L~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+||+||||+|++.+|+++.+
T Consensus         1 i~G~PgsGK~t~~~~la~~~~   21 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG   21 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT
T ss_pred             CcCCCCCChHHHHHHHHHhcC
Confidence            689999999999999998753

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=93.52  E-value=0.065  Score=46.21  Aligned_cols=22  Identities=41%  Similarity=0.667  Sum_probs=19.9

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      =|+|+||+|+|||||++.|...
T Consensus         3 rimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999865

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00017 cmk cytidylate kinase

Probab=93.51  E-value=0.06  Score=49.66  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.5

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..|.|.||+||||||+++.|++..
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~   26 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKL   26 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999864

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=93.47  E-value=0.063  Score=46.57  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=20.9

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|+|+|++|||||++++.|++..
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            57899999999999999999864

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=93.47  E-value=0.084  Score=47.55  Aligned_cols=42  Identities=17%  Similarity=0.405  Sum_probs=30.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh--ccCC---cceeeeccCCCCCC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME--DSDR---FAAAIPHTSRPMKD  144 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~--~~~~---~~~~~~~tTr~pr~  144 (366)
                      ...++.|+||||+|||||...++-  .|..   .....++|..+|..
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~   70 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE   70 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc
Confidence            567899999999999999999884  2421   22235677777743

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=93.46  E-value=0.067  Score=47.73  Aligned_cols=24  Identities=17%  Similarity=0.207  Sum_probs=21.0

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHH
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      .....+.|+||+|+|||||.+.+.
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            356789999999999999998875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG1738|consensus

Probab=93.46  E-value=0.1  Score=54.30  Aligned_cols=64  Identities=20%  Similarity=0.271  Sum_probs=54.4

Q ss_pred             CcEEEE-eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRN-EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~-~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+.|+. .++-.+|+.+.++|||+....+..||.++.||+..+.+.++..++..|+...--+.+.
T Consensus       216 g~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~  280 (638)
T KOG1738|consen  216 GLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELT  280 (638)
T ss_pred             ceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceee
Confidence            455654 3556688999999999999999999999999999999999999999998876666655

>PRK12289 GTPase RsgA; Reviewed

Probab=93.46  E-value=0.065  Score=53.10  Aligned_cols=24  Identities=33%  Similarity=0.692  Sum_probs=21.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++++|+|+||||||||.+.|...
T Consensus       172 ~ki~v~iG~SgVGKSSLIN~L~~~  195 (352)
T PRK12289        172 NKITVVAGPSGVGKSSLINRLIPD  195 (352)
T ss_pred             cceEEEEeCCCCCHHHHHHHHcCc
Confidence            357899999999999999999854

>PRK13949 shikimate kinase; Provisional

Probab=93.45  E-value=0.073  Score=47.02  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +-|+|+|++|+||||++..|++...
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3589999999999999999998753

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=93.44  E-value=0.057  Score=54.01  Aligned_cols=25  Identities=32%  Similarity=0.636  Sum_probs=21.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+++|+|+|||||||||-..+|+..
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar  226 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAAR  226 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHH
Confidence            3899999999999999977777643

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=93.42  E-value=0.065  Score=48.85  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=22.8

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+++++|+||+|+|||+++..+.+.
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~   61 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAA   61 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999865

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=93.39  E-value=0.07  Score=48.16  Aligned_cols=27  Identities=15%  Similarity=0.208  Sum_probs=23.4

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +..+..|+|+|++|+|||||+..|...
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~   47 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEA   47 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999999875

>PRK04182 cytidylate kinase; Provisional

Probab=93.39  E-value=0.066  Score=46.80  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=21.1

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|+|+|++||||||++..|++..
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            57899999999999999999875

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.39  E-value=0.15  Score=47.72  Aligned_cols=54  Identities=15%  Similarity=0.211  Sum_probs=39.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRAQFELDILARK  168 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~ef~~~~~~g~  168 (366)
                      ...++.|+||||+|||+|.+.+.-..            +|..||  +.|.++.-++.++..+..+.-.
T Consensus        33 ~Gei~~iiGgSGsGKStlLr~I~Gll------------~P~~GeI~i~G~~i~~ls~~~~~~ir~r~G   88 (263)
T COG1127          33 RGEILAILGGSGSGKSTLLRLILGLL------------RPDKGEILIDGEDIPQLSEEELYEIRKRMG   88 (263)
T ss_pred             CCcEEEEECCCCcCHHHHHHHHhccC------------CCCCCeEEEcCcchhccCHHHHHHHHhhee
Confidence            45789999999999999999887431            244444  4788888888877766665433

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=93.38  E-value=0.067  Score=47.06  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .|.|.||+||||||++..|++..+
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC
Confidence            478999999999999999998753

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=93.37  E-value=0.069  Score=47.74  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++|+||+||||||++..|+..
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4578999999999999999998865

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=93.34  E-value=0.29  Score=49.22  Aligned_cols=53  Identities=23%  Similarity=0.382  Sum_probs=40.1

Q ss_pred             EEeCCeEEEEEEc--------CCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc
Q psy16959          5 RNEGDAVIVGRVV--------KGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ   60 (366)
Q Consensus         5 ~~~~~gi~I~~v~--------~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~   60 (366)
                      +-..+||+|....        .+|||+.+| |+.||.|++|||..+.+.  +++...++...+.
T Consensus       101 ~l~t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~--~DL~~iL~~~~g~  161 (402)
T TIGR02860       101 KLNTKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNM--DDLANLINKAGGE  161 (402)
T ss_pred             EEecCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCC
Confidence            3445778775432        258999999 999999999999999654  7777888766544

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=93.33  E-value=0.081  Score=49.09  Aligned_cols=25  Identities=20%  Similarity=0.591  Sum_probs=21.7

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .-++|.||+|+|||||+.-++++.+
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~   75 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELG   75 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred             ceEEEECCCccchhHHHHHHHhccC
Confidence            3489999999999999999998754

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=93.32  E-value=0.059  Score=45.07  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||.+.|+..
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEEccCCCccccceeeeccc
Confidence            4568999999999999999999864

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=93.30  E-value=0.072  Score=45.96  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +++|+|++||||||++..|.+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l   23 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKL   23 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998753

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=93.30  E-value=0.046  Score=50.03  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=21.4

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++|+|+|++||||||+++.|++..
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L   25 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKEL   25 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHH
Confidence            478999999999999999998753

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=93.30  E-value=0.071  Score=53.20  Aligned_cols=26  Identities=19%  Similarity=0.459  Sum_probs=22.7

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.+++|+||+|+||||++.+|+..
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999999999999864

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=93.28  E-value=0.071  Score=46.31  Aligned_cols=24  Identities=29%  Similarity=0.602  Sum_probs=21.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+-++|+||||+|||+++..|.++
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            456899999999999999999876

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=93.26  E-value=0.088  Score=49.29  Aligned_cols=24  Identities=8%  Similarity=0.144  Sum_probs=21.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+...+|+||+|||||+|+..|.-
T Consensus        24 ~~~~~~IvG~NGsGKStll~Ai~~   47 (251)
T cd03273          24 DPQFNAITGLNGSGKSNILDAICF   47 (251)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999999863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PLN02422 dephospho-CoA kinase

Probab=93.18  E-value=1.5  Score=40.92  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=19.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHh
Q psy16959        105 RPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      +.|.|+|..|||||+++..|.+
T Consensus         2 ~~igltG~igsGKstv~~~l~~   23 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFKS   23 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999985

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=93.14  E-value=0.12  Score=54.18  Aligned_cols=25  Identities=32%  Similarity=0.507  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+++++|+||+|+|||+|+..|++.
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~  126 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSL  126 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHH
Confidence            4568899999999999999999874

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=93.12  E-value=0.088  Score=50.16  Aligned_cols=23  Identities=13%  Similarity=0.229  Sum_probs=20.0

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|.|+|+|||||||++..|.+..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l   23 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIF   23 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999988653

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd04159 Arl10_like Arl10-like subfamily

Probab=93.11  E-value=0.071  Score=44.64  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|+|||+|..+|...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            689999999999999999864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=93.10  E-value=0.085  Score=49.43  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..++|+||+|+|||++++.+.+..
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l   67 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRL   67 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence            3478999999999999999998764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK12288 GTPase RsgA; Reviewed

Probab=93.07  E-value=0.071  Score=52.71  Aligned_cols=24  Identities=21%  Similarity=0.524  Sum_probs=21.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++++|+|+||||||||.+.|..+
T Consensus       205 ~ki~~~vG~sgVGKSTLiN~Ll~~  228 (347)
T PRK12288        205 GRISIFVGQSGVGKSSLINALLPE  228 (347)
T ss_pred             hCCEEEECCCCCCHHHHHHHhccc
Confidence            457899999999999999999854

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=93.07  E-value=0.076  Score=45.78  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=24.0

Q ss_pred             EeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCC
Q psy16959        109 LIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKD  144 (366)
Q Consensus       109 L~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~  144 (366)
                      |+|++|||||||...|..... .....+.||..|..
T Consensus         1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~   35 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNL   35 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcc
Confidence            589999999999999987532 22233455655543

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG1191|consensus

Probab=93.06  E-value=0.09  Score=53.57  Aligned_cols=59  Identities=22%  Similarity=0.415  Sum_probs=48.3

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCC--CCCCcceeecCHHHHHH
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDG--EVDGQDYHFITRAQFEL  162 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~--E~~g~~y~~vs~~ef~~  162 (366)
                      +--|+|+|++.+|||+|.+.|.++.-....+++-|||-.-.-  +++|.++..+|..-..+
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe  328 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE  328 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence            445899999999999999999998877888899999987433  46898888887765544

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=93.05  E-value=0.085  Score=45.31  Aligned_cols=23  Identities=30%  Similarity=0.632  Sum_probs=20.5

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +.|+|+|++|+|||+|+.+|...
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~   23 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRA   23 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Confidence            35889999999999999999865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=93.03  E-value=0.088  Score=48.36  Aligned_cols=25  Identities=36%  Similarity=0.457  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..++++|+||+|+|||+|+..++..
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~   65 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVAD   65 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999864

>PLN02842 nucleotide kinase

Probab=93.02  E-value=0.4  Score=49.66  Aligned_cols=22  Identities=14%  Similarity=0.321  Sum_probs=19.5

Q ss_pred             EEeCCCCCChHHHHHHHHhccC
Q psy16959        108 VLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       108 vL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +|+||+||||+|++..|++..+
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg   22 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFG   22 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhC
Confidence            4789999999999999998764

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=93.01  E-value=0.24  Score=42.52  Aligned_cols=53  Identities=19%  Similarity=0.171  Sum_probs=37.2

Q ss_pred             CeEEEEEEcCCchhcccCCCCC-CCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE-EEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHE-GDEILEINGIEIRGKSIHIVCDILVGLTGQE-MTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~-GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v-~l~   64 (366)
                      .++-|-+|.|+|||+.+| |.+ .|-|+.+++..+.+  .++....+....+.. .|.
T Consensus        43 ~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~l~~~v~~~~~~~l~L~   97 (138)
T PF04495_consen   43 EGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDDLFELVEANENKPLQLY   97 (138)
T ss_dssp             CEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCHHHHHHHHTTTS-EEEE
T ss_pred             ceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHHHHHHHHHcCCCcEEEE
Confidence            477889999999999999 887 69999999988875  466777776665543 443

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=92.99  E-value=0.074  Score=47.44  Aligned_cols=26  Identities=19%  Similarity=0.100  Sum_probs=22.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +.+|+|.|+.||||||+++.|++...
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999998753

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK06851 hypothetical protein; Provisional

Probab=92.98  E-value=0.07  Score=53.07  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..++++|.|++|+||||+++++.+.
T Consensus        29 ~~~~~il~G~pGtGKStl~~~i~~~   53 (367)
T PRK06851         29 ANRIFILKGGPGTGKSTLMKKIGEE   53 (367)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999999998764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=92.98  E-value=0.17  Score=47.17  Aligned_cols=57  Identities=18%  Similarity=0.206  Sum_probs=36.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHHHHHHHHHhcceeEE
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRAQFELDILARKFIEH  172 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~ef~~~~~~g~fle~  172 (366)
                      .-.|+|+||||+|||||...|...-            .|..|+  .+|.+.......+..+....-.|+-.
T Consensus        30 GE~VaiIG~SGaGKSTLLR~lngl~------------d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ   88 (258)
T COG3638          30 GEMVAIIGPSGAGKSTLLRSLNGLV------------DPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQ   88 (258)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhccc------------CCCcceEEecccchhccchHHHHHHHHhceeEec
Confidence            4578999999999999999987531            122222  24444444555666666666665543

>KOG3347|consensus

Probab=92.97  E-value=0.14  Score=44.51  Aligned_cols=54  Identities=20%  Similarity=0.362  Sum_probs=32.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC--CCCCCCcceeecCHHHH
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK--DGEVDGQDYHFITRAQF  160 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr--~~E~~g~~y~~vs~~ef  160 (366)
                      |+++|.+|+||||++.+|++..+--.+.++.-.+.--  .+--+.-+.|+++.+.+
T Consensus        10 ILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv   65 (176)
T KOG3347|consen   10 ILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKV   65 (176)
T ss_pred             EEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHH
Confidence            8899999999999999999765433333332211110  11123445566666554

>COG4639 Predicted kinase [General function prediction only]

Probab=92.96  E-value=0.07  Score=46.61  Aligned_cols=25  Identities=16%  Similarity=0.294  Sum_probs=21.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +.+++|+|++||||||+++.....+
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~~~~   26 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENFLQN   26 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhCCCc
Confidence            4689999999999999999866543

>PRK07667 uridine kinase; Provisional

Probab=92.94  E-value=0.087  Score=47.43  Aligned_cols=24  Identities=17%  Similarity=0.167  Sum_probs=21.2

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+|.|.|++||||||++..|.+..
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l   41 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENM   41 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999998753

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=92.94  E-value=0.09  Score=46.89  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5578999999999999999998854

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=92.94  E-value=0.081  Score=49.11  Aligned_cols=58  Identities=24%  Similarity=0.360  Sum_probs=40.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHHHHHHHHHhcceeEEE
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRAQFELDILARKFIEHG  173 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~ef~~~~~~g~fle~~  173 (366)
                      ..-+.+|+||+|||||||+..|+-+|..-.          +.|+  .+|.+   ++..++++....|-|+.+-
T Consensus        29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V----------t~G~I~~~Ged---I~~l~~~ERAr~GifLafQ   88 (251)
T COG0396          29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEV----------TEGEILFDGED---ILELSPDERARAGIFLAFQ   88 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCceE----------ecceEEECCcc---cccCCHhHHHhcCCEEeec
Confidence            445789999999999999999998764211          1222  23433   5556667777889988875

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=92.93  E-value=0.11  Score=49.10  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=23.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..++++|.||+|+|||+++..|++..
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~l   45 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKR   45 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998754

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=92.90  E-value=0.081  Score=48.02  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHh
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .++++|+||+|+||||+++.++-
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            48999999999999999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=92.90  E-value=0.074  Score=52.57  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHh
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .-.+.|+|||||||||+...|+-
T Consensus        31 Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          31 GEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            45788999999999999999984

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=92.85  E-value=0.092  Score=44.09  Aligned_cols=21  Identities=33%  Similarity=0.735  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|+|||++...|...
T Consensus         4 i~l~G~~~~GKstli~~l~~~   24 (157)
T cd04164           4 VVIVGKPNVGKSSLLNALAGR   24 (157)
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999864

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK09087 hypothetical protein; Validated

Probab=92.83  E-value=0.087  Score=48.85  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++++|+||+|||||+|++.+++..
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~   68 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKS   68 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhc
Confidence            3569999999999999999888653

>cd01858 NGP_1 NGP-1

Probab=92.82  E-value=0.076  Score=45.88  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..++++|++|+|||||.+.|...
T Consensus       103 ~~v~~~G~~nvGKStliN~l~~~  125 (157)
T cd01858         103 ISVGFIGYPNVGKSSIINTLRSK  125 (157)
T ss_pred             eEEEEEeCCCCChHHHHHHHhcC
Confidence            34679999999999999999864

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=92.82  E-value=0.094  Score=47.72  Aligned_cols=25  Identities=12%  Similarity=0.308  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=92.81  E-value=0.1  Score=49.22  Aligned_cols=25  Identities=16%  Similarity=0.297  Sum_probs=21.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++|.||+|+|||+++..+++.
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~   65 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKL   65 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=92.80  E-value=0.092  Score=44.44  Aligned_cols=21  Identities=24%  Similarity=0.680  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|+.++...
T Consensus         4 i~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           4 LVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999999864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK01184 hypothetical protein; Provisional

Probab=92.79  E-value=0.09  Score=46.58  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=18.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+|+|+||+||||||++. ++++.
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~   24 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREM   24 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHc
Confidence            478899999999999876 66554

>cd01898 Obg Obg subfamily

Probab=92.78  E-value=0.11  Score=44.56  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||||+..|...
T Consensus         3 v~ivG~~~~GKStl~~~l~~~   23 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNA   23 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999854

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=92.78  E-value=0.11  Score=48.85  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=21.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.++|+|+||||||||...|...
T Consensus       120 ~~~~~~~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157       120 NRISVFAGQSGVGKSSLINALDPS  143 (245)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhh
Confidence            468899999999999999999854

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.77  E-value=0.095  Score=47.43  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4678999999999999999999854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=92.76  E-value=0.093  Score=50.62  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=20.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+|-|.||+||||||++..|...
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~l   85 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQAL   85 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456679999999999999887643

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=92.69  E-value=0.1  Score=45.07  Aligned_cols=40  Identities=20%  Similarity=0.381  Sum_probs=29.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK  143 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr  143 (366)
                      ...++++|.+++|||++...|......-....++||+.+.
T Consensus       100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~  139 (155)
T cd01849         100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ  139 (155)
T ss_pred             CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE
Confidence            4568899999999999999998643222333467777654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=92.68  E-value=0.1  Score=47.55  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=92.66  E-value=0.1  Score=47.31  Aligned_cols=25  Identities=20%  Similarity=0.489  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK00089 era GTPase Era; Reviewed

Probab=92.65  E-value=0.094  Score=50.14  Aligned_cols=38  Identities=24%  Similarity=0.460  Sum_probs=26.9

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      ..|+|+|++|||||||...|....-......+.||+..
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~   43 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR   43 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccccc
Confidence            35889999999999999999865322233345566543

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=92.65  E-value=0.098  Score=46.70  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            4568999999999999999999854

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd04155 Arl3 Arl3 subfamily

Probab=92.64  E-value=0.094  Score=45.36  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=20.0

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -++|+||+|||||+|+..|...
T Consensus        16 ~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          16 RILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             EEEEEccCCCCHHHHHHHHhcC
Confidence            3899999999999999999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=92.63  E-value=0.1  Score=47.56  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=92.63  E-value=0.1  Score=47.18  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999854

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=92.62  E-value=0.1  Score=50.41  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=21.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |-+|+|.|++||||||++..|+.+.
T Consensus        92 p~iIlI~G~sgsGKStlA~~La~~l  116 (301)
T PRK04220         92 PIIILIGGASGVGTSTIAFELASRL  116 (301)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3457899999999999999999875

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=92.61  E-value=0.1  Score=48.15  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=92.60  E-value=0.1  Score=47.66  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||.+.|+..
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl   36 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGL   36 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.58  E-value=0.1  Score=47.06  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK12338 hypothetical protein; Provisional

Probab=92.57  E-value=0.096  Score=51.11  Aligned_cols=26  Identities=15%  Similarity=0.271  Sum_probs=22.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |.+|+|.|++|+||||++..|++..+
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l~   29 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTLN   29 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHCC
Confidence            45788999999999999999998754

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=92.56  E-value=0.1  Score=44.38  Aligned_cols=21  Identities=19%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|+.+|+..
T Consensus         3 i~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999864

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=92.51  E-value=0.11  Score=47.06  Aligned_cols=25  Identities=16%  Similarity=0.286  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=92.50  E-value=0.11  Score=47.16  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999998854

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=92.50  E-value=0.11  Score=48.16  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=92.50  E-value=0.11  Score=49.73  Aligned_cols=26  Identities=23%  Similarity=0.575  Sum_probs=22.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+..++|+||+|+|||+|+..+++..
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~   54 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEM   54 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34569999999999999999998764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=92.50  E-value=0.12  Score=44.11  Aligned_cols=21  Identities=19%  Similarity=0.529  Sum_probs=18.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|+.+|..+
T Consensus         3 i~vvG~~~~GKtsl~~~l~~~   23 (164)
T cd04101           3 CAVVGDPAVGKTAFVQMFHSN   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999754

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=92.50  E-value=0.075  Score=46.16  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=17.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+.|+|||||+..|.+.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999977

>PF13245 AAA_19: Part of AAA domain

Probab=92.49  E-value=0.12  Score=39.44  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=16.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHH
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      .+.++|.||+|+|||+++..++
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i   31 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARI   31 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4567889999999996555544

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=92.49  E-value=0.25  Score=51.85  Aligned_cols=28  Identities=14%  Similarity=0.281  Sum_probs=24.2

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .....|+|+|..|+||||+.+.|++..+
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~   31 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMR   31 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhC
Confidence            4556899999999999999999998753

>PRK08084 DNA replication initiation factor; Provisional

Probab=92.48  E-value=0.11  Score=48.46  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=21.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++++|+||+|+|||+|+..++..
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~   68 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAE   68 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999988764

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=92.47  E-value=0.11  Score=47.11  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=92.47  E-value=0.1  Score=43.71  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=19.4

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.+|...
T Consensus         3 v~liG~~~vGKSsL~~~l~~~   23 (142)
T TIGR02528         3 IMFIGSVGCGKTTLTQALQGE   23 (142)
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999999865

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=92.46  E-value=0.11  Score=47.96  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=92.43  E-value=0.11  Score=44.40  Aligned_cols=21  Identities=19%  Similarity=0.597  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.++...
T Consensus         3 i~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        3 LVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999999864

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=92.41  E-value=0.11  Score=47.30  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999854

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=92.40  E-value=0.11  Score=47.75  Aligned_cols=25  Identities=16%  Similarity=0.186  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999864

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00876 Ras Ras family

Probab=92.39  E-value=0.12  Score=43.58  Aligned_cols=21  Identities=14%  Similarity=0.574  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|..+|...
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999854

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=92.39  E-value=0.11  Score=47.20  Aligned_cols=25  Identities=16%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4578999999999999999999854

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=92.32  E-value=0.14  Score=48.92  Aligned_cols=26  Identities=31%  Similarity=0.753  Sum_probs=22.5

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...+|++|+||+|+|||.+++.+.+.
T Consensus        31 ~~~~pvLl~G~~GtGKT~li~~~l~~   56 (272)
T PF12775_consen   31 SNGRPVLLVGPSGTGKTSLIQNFLSS   56 (272)
T ss_dssp             HCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             HcCCcEEEECCCCCchhHHHHhhhcc
Confidence            35789999999999999999887654

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=92.31  E-value=0.11  Score=45.19  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=19.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ++.|+|++|||||||+.+|+..
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~   22 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKA   22 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999875

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=92.29  E-value=0.11  Score=47.06  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.|+||+|+|||||++.|+..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            8899999999999999999854

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=92.27  E-value=0.11  Score=47.35  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999998854

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=92.27  E-value=0.1  Score=46.11  Aligned_cols=49  Identities=12%  Similarity=0.174  Sum_probs=30.4

Q ss_pred             hHHHHHHHHcCCeEEEcccch-h---hhccccCCCCcEEEEEeCCCHHHHHHHH
Q psy16959        301 LDAIRTVVNAGKICVLNLHPQ-S---LKILRSSDLKPFVIFVAPPPFELLKQKR  350 (366)
Q Consensus       301 ~~~i~~vir~~k~~~l~~~p~-~---~~~l~~~~~~p~vi~~~~~~~~~l~~~~  350 (366)
                      .+++..++...+.++.++... .   ++.++.. ..-.++-+...||+.|++.+
T Consensus       115 ~~~v~~~l~s~~~vi~vv~~~~~~~~l~~i~~~-~~~~i~~vt~~NRd~l~~~i  167 (168)
T PF03266_consen  115 REAVEKLLDSNKPVIGVVHKRSDNPFLEEIKRR-PDVKIFEVTEENRDALPEEI  167 (168)
T ss_dssp             HHHHHHHHCTTSEEEEE--SS--SCCHHHHHTT-TTSEEEE--TTTCCCHHHHH
T ss_pred             HHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhC-CCcEEEEeChhHHhhHhhhh
Confidence            457788888888899888886 2   3444322 12455667888999998765

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd01894 EngA1 EngA1 subfamily

Probab=92.26  E-value=0.063  Score=45.20  Aligned_cols=20  Identities=35%  Similarity=0.728  Sum_probs=18.0

Q ss_pred             EEeCCCCCChHHHHHHHHhc
Q psy16959        108 VLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       108 vL~GpsgsGK~~L~~~L~~~  127 (366)
                      +|+|.+|+|||+|..+|...
T Consensus         1 ~l~G~~~~GKssl~~~l~~~   20 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGR   20 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCC
Confidence            47899999999999999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=92.23  E-value=0.14  Score=53.21  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..+.|+||||||||||++.|...
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~  384 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGL  384 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4678999999999999999999865

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=92.21  E-value=0.12  Score=47.20  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=92.20  E-value=0.12  Score=43.67  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.3

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++|+||+|+|||+++..++..
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~   22 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALN   22 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHH
Confidence            3689999999999999999764

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=92.19  E-value=0.13  Score=47.02  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG3532|consensus

Probab=92.18  E-value=0.34  Score=51.07  Aligned_cols=61  Identities=30%  Similarity=0.406  Sum_probs=51.1

Q ss_pred             CcEEEEeC-CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG-DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~-~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+..+.++ ..|-|-.|.+.++|.++. +.+||+++.|||.++.  +..++...++...+.+..+
T Consensus       389 g~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l  450 (1051)
T KOG3532|consen  389 GLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVL  450 (1051)
T ss_pred             eEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEE
Confidence            44455444 356788899999999998 9999999999999995  6699999999999998766

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=92.18  E-value=0.1  Score=47.04  Aligned_cols=27  Identities=26%  Similarity=0.573  Sum_probs=21.6

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..|..+++.|++|||||+++..+....
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~   39 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEF   39 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence            466788999999999999999988764

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=92.17  E-value=0.12  Score=47.58  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+-.
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGL   58 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999854

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=92.16  E-value=0.12  Score=47.70  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            4568999999999999999999854

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=92.14  E-value=0.13  Score=47.70  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=22.7

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .....+.|+||+|+|||||++.|+-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296          26 PSGELVALLGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999864

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=92.13  E-value=0.13  Score=47.86  Aligned_cols=49  Identities=22%  Similarity=0.395  Sum_probs=32.5

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFIT  156 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs  156 (366)
                      ++|+|++++|||+|+.+|..... .....++||..|..+.  .++....+++
T Consensus         3 v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~D   53 (233)
T cd01896           3 VALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLD   53 (233)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEE
Confidence            67999999999999999986421 1223456676665553  3555555544

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=92.11  E-value=0.13  Score=47.17  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=22.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   59 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGL   59 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            5678999999999999999999854

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=92.10  E-value=0.15  Score=47.12  Aligned_cols=22  Identities=14%  Similarity=0.289  Sum_probs=20.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHH
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      +.+..|+||+|+|||||+..|.
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHH
Confidence            5688999999999999999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=92.10  E-value=0.13  Score=46.56  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999864

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=92.10  E-value=0.13  Score=47.10  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRL   49 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            5678999999999999999999854

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=92.06  E-value=0.09  Score=49.55  Aligned_cols=25  Identities=12%  Similarity=0.355  Sum_probs=21.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+--|+|+|.+|+|||+|...|...
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~   54 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGE   54 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            4445889999999999999999865

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=92.05  E-value=0.13  Score=47.04  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGL   54 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999864

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK06893 DNA replication initiation factor; Validated

Probab=92.05  E-value=0.12  Score=47.92  Aligned_cols=23  Identities=13%  Similarity=0.199  Sum_probs=20.2

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +.++|.||+|+|||.|+..++..
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~   62 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNH   62 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35799999999999999999864

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=91.99  E-value=0.15  Score=44.92  Aligned_cols=25  Identities=20%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~   51 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGL   51 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4568999999999999999999854

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=91.98  E-value=0.13  Score=45.49  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..-|+|+|++|+|||+|..+|+..
T Consensus        24 ~~~v~ivG~~~~GKSsli~~l~~~   47 (196)
T PRK00454         24 GPEIAFAGRSNVGKSSLINALTNR   47 (196)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            344899999999999999999864

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=91.97  E-value=0.13  Score=43.66  Aligned_cols=21  Identities=24%  Similarity=0.651  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|+.+|...
T Consensus         3 i~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           3 VIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999853

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=91.97  E-value=0.12  Score=43.63  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=18.6

Q ss_pred             EEEeCCCCCChHHHHHHHHh
Q psy16959        107 IVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~  126 (366)
                      |+|+|++|+|||+|...|..
T Consensus         2 i~l~G~~g~GKTtL~~~l~~   21 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN   21 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            68999999999999999994

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=91.95  E-value=0.15  Score=45.15  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=91.93  E-value=0.14  Score=45.39  Aligned_cols=26  Identities=19%  Similarity=0.256  Sum_probs=22.9

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.+++|+|++|+||||++..|...
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~   41 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKK   41 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999999875

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=91.93  E-value=0.54  Score=48.66  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .|+|+|+.|+||||+++.|++..+
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg   25 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLD   25 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            378999999999999999997653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=91.92  E-value=0.13  Score=46.03  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...++.|+||+|+|||||++.|+-
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999999984

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=91.91  E-value=0.14  Score=47.05  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=91.89  E-value=0.13  Score=53.08  Aligned_cols=25  Identities=20%  Similarity=0.465  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++++.|+||+||||||.+.+|+..
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHH
Confidence            4578999999999999999999853

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=91.89  E-value=0.13  Score=51.78  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=23.6

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ...+.|+|+|++|+|||||+..|++..
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~~  243 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANIF  243 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence            345679999999999999999999864

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=91.89  E-value=0.15  Score=44.62  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGL   50 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5678999999999999999999864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=91.87  E-value=0.14  Score=46.18  Aligned_cols=25  Identities=12%  Similarity=0.234  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||.+.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999854

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=91.86  E-value=0.14  Score=48.10  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGF   50 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999864

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=91.85  E-value=0.15  Score=44.89  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=91.84  E-value=0.17  Score=44.48  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=21.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...-|+|+|++|+|||||+.+|...
T Consensus        17 ~~~~i~ivG~~~~GKStlin~l~~~   41 (179)
T TIGR03598        17 DGPEIAFAGRSNVGKSSLINALTNR   41 (179)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3445899999999999999999864

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=91.83  E-value=0.15  Score=47.21  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRL   50 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999854

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10908 cell division protein FtsE; Provisional

Probab=91.83  E-value=0.15  Score=46.66  Aligned_cols=25  Identities=16%  Similarity=0.162  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGI   51 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999854

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=91.81  E-value=0.13  Score=51.61  Aligned_cols=25  Identities=28%  Similarity=0.581  Sum_probs=21.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+++++|+||+||||||.+.+|+..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~  197 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAI  197 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999854

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=91.81  E-value=0.15  Score=43.60  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            5578999999999999999999864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.80  E-value=0.15  Score=45.72  Aligned_cols=25  Identities=12%  Similarity=0.124  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>cd01855 YqeH YqeH

Probab=91.78  E-value=0.15  Score=45.42  Aligned_cols=43  Identities=19%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC--------CcceeeeccCCCCCCCC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD--------RFAAAIPHTSRPMKDGE  146 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~--------~~~~~~~~tTr~pr~~E  146 (366)
                      +..++|+|.+|+|||||...|.....        ......+.||+.+....
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~  177 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIP  177 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEe
Confidence            45689999999999999999986321        12233556777764433

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=91.76  E-value=0.15  Score=45.62  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=22.3

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +.+.+|-|+|.||||||||+..|.+.
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~   46 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEK   46 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence            34567789999999999999999875

>cd01860 Rab5_related Rab5-related subfamily

Probab=91.76  E-value=0.15  Score=43.53  Aligned_cols=21  Identities=29%  Similarity=0.710  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|+++||||+|..+|...
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           4 LVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999864

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04136 Rap_like Rap-like subfamily

Probab=91.76  E-value=0.15  Score=43.42  Aligned_cols=21  Identities=19%  Similarity=0.608  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.+++..
T Consensus         4 i~i~G~~~vGKTsl~~~~~~~   24 (163)
T cd04136           4 VVVLGSGGVGKSALTVQFVQG   24 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999999864

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=91.75  E-value=0.15  Score=45.92  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=91.73  E-value=0.16  Score=47.57  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~   48 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGV   48 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=91.71  E-value=0.13  Score=47.13  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=22.6

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ..|+|.||-|+|||||++.|+++..
T Consensus         5 ~~IvI~G~IG~GKSTLa~~La~~l~   29 (216)
T COG1428           5 MVIVIEGMIGAGKSTLAQALAEHLG   29 (216)
T ss_pred             cEEEEecccccCHHHHHHHHHHHhC
Confidence            5789999999999999999999754

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=91.71  E-value=0.14  Score=51.51  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++.|.|+||+||||||++..|+..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~  264 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQ  264 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHH
Confidence            4578999999999999999999753

>KOG0606|consensus

Probab=91.70  E-value=0.24  Score=54.87  Aligned_cols=52  Identities=29%  Similarity=0.351  Sum_probs=47.3

Q ss_pred             EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .|..|.+||||..+| |+.||.|.-|||..+.++.|.+++++|-...+.+.+-
T Consensus       661 ~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~  712 (1205)
T KOG0606|consen  661 SVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLR  712 (1205)
T ss_pred             eeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEE
Confidence            567889999999999 9999999999999999999999999998877777654

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=91.70  E-value=0.11  Score=44.43  Aligned_cols=22  Identities=27%  Similarity=0.684  Sum_probs=19.9

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +|.++|+++||||||+..|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999875

>PRK05439 pantothenate kinase; Provisional

Probab=91.69  E-value=0.16  Score=49.55  Aligned_cols=25  Identities=16%  Similarity=0.106  Sum_probs=20.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+-+|.|.|++||||||++..|...
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~  109 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQAL  109 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3445679999999999999999864

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=91.69  E-value=0.15  Score=49.92  Aligned_cols=25  Identities=16%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.++.|+||+|+||||++..|+..
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~  137 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHK  137 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4568899999999999999999854

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=91.68  E-value=0.15  Score=46.96  Aligned_cols=25  Identities=12%  Similarity=0.194  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   35 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGL   35 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=91.65  E-value=0.16  Score=47.13  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=91.64  E-value=0.16  Score=47.15  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=22.5

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .....+.|+||+|+|||||++.|+-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (242)
T cd03295          25 AKGEFLVLIGPSGSGKTTTMKMINRL   50 (242)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999999854

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=91.64  E-value=0.17  Score=44.87  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=22.6

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .....+.|+||+|+|||||++.|+..
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~   48 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGL   48 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999864

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=91.64  E-value=0.16  Score=46.68  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999854

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=91.63  E-value=0.16  Score=46.22  Aligned_cols=25  Identities=20%  Similarity=0.222  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=91.63  E-value=0.16  Score=46.27  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G~   53 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAGL   53 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5678999999999999999999854

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=91.62  E-value=0.15  Score=42.11  Aligned_cols=21  Identities=43%  Similarity=0.922  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+..|...
T Consensus         4 i~~~G~~~~GKstl~~~l~~~   24 (161)
T TIGR00231         4 IVIVGDPNVGKSTLLNRLLGN   24 (161)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=91.61  E-value=0.17  Score=44.71  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4578999999999999999999854

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=91.60  E-value=0.16  Score=47.03  Aligned_cols=25  Identities=16%  Similarity=0.385  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.60  E-value=0.15  Score=46.98  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=21.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..++..|+||||+||||+...|-+.
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNRm   56 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNRM   56 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHhh
Confidence            4568899999999999999888654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=91.60  E-value=0.15  Score=47.53  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+..+.|+||+|+|||||++.|+.
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNR   54 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            456899999999999999999985

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=91.59  E-value=0.16  Score=48.46  Aligned_cols=26  Identities=19%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+++++++||+|+||||++..|+..
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~   95 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANK   95 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34678899999999999999988754

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=91.59  E-value=0.14  Score=43.85  Aligned_cols=21  Identities=19%  Similarity=0.438  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|+|||+|..+|...
T Consensus         2 i~~vG~~~~GKstLi~~l~~~   22 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTL   22 (167)
T ss_pred             EEEEecCCCCHHHHHHHHhhh
Confidence            689999999999999999754

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=91.58  E-value=0.16  Score=46.68  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGL   49 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999864

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=91.57  E-value=0.15  Score=50.63  Aligned_cols=24  Identities=13%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...|+|+|||||||||++..|+..
T Consensus       134 ~glilI~GpTGSGKTTtL~aLl~~  157 (358)
T TIGR02524       134 EGIVFITGATGSGKSTLLAAIIRE  157 (358)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998754

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd04113 Rab4 Rab4 subfamily

Probab=91.57  E-value=0.15  Score=43.43  Aligned_cols=21  Identities=29%  Similarity=0.656  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||+|+.+|...
T Consensus         3 i~v~G~~~vGKTsli~~l~~~   23 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVEN   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=91.54  E-value=0.15  Score=46.12  Aligned_cols=20  Identities=15%  Similarity=0.448  Sum_probs=18.8

Q ss_pred             cEEEeCCCCCChHHHHHHHH
Q psy16959        106 PIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~  125 (366)
                      .++|+||+|+|||||+..|.
T Consensus        24 ~~~i~G~nGsGKStll~al~   43 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIR   43 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            88999999999999999886

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=91.54  E-value=0.17  Score=45.89  Aligned_cols=25  Identities=16%  Similarity=0.310  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl   47 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGF   47 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5578999999999999999999854

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=91.54  E-value=0.15  Score=53.21  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=23.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..++++|+||+|+||||.++.|+++.
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~el   69 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKEL   69 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999999874

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=91.52  E-value=0.15  Score=46.13  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHh
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .-.++|+||||+||||+.+.|..
T Consensus        28 Gef~fl~GpSGAGKSTllkLi~~   50 (223)
T COG2884          28 GEFVFLTGPSGAGKSTLLKLIYG   50 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            34688999999999999999874

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=91.52  E-value=0.23  Score=52.24  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus       368 ~G~~~aIvG~sGsGKSTLl~ll~gl  392 (582)
T PRK11176        368 AGKTVALVGRSGSGKSTIANLLTRF  392 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4567999999999999999999865

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=91.51  E-value=0.17  Score=46.46  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~   52 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRF   52 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999854

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.51  E-value=0.17  Score=45.89  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGL   51 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999864

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=91.51  E-value=0.14  Score=44.91  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=20.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+|.|+|.+|||||||+..|.+.
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~   25 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERR   25 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999875

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=91.51  E-value=0.18  Score=51.08  Aligned_cols=26  Identities=31%  Similarity=0.723  Sum_probs=22.7

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +.-|+|+||+|+|||+++..|++..+
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~   75 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45689999999999999999998643

>CHL00181 cbbX CbbX; Provisional

Probab=91.51  E-value=0.18  Score=48.47  Aligned_cols=24  Identities=13%  Similarity=0.350  Sum_probs=21.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++|.||+|+|||+++..+++.
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~   82 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADI   82 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            445899999999999999999864

>KOG0744|consensus

Probab=91.50  E-value=0.13  Score=50.07  Aligned_cols=25  Identities=36%  Similarity=0.636  Sum_probs=22.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .|+|.|.||+|.|||+|.+.|++..
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkL  201 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKL  201 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhh
Confidence            5889999999999999999999864

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=91.49  E-value=0.15  Score=46.71  Aligned_cols=25  Identities=12%  Similarity=0.326  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~   56 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGR   56 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCc
Confidence            4568999999999999999999854

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd01870 RhoA_like RhoA-like subfamily

Probab=91.48  E-value=0.16  Score=43.98  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.9

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      =|+|+|++|||||+|+.++...
T Consensus         3 ki~iiG~~~~GKTsl~~~~~~~   24 (175)
T cd01870           3 KLVIVGDGACGKTCLLIVFSKD   24 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999864

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=91.48  E-value=0.18  Score=45.84  Aligned_cols=20  Identities=15%  Similarity=0.383  Sum_probs=18.6

Q ss_pred             cEEEeCCCCCChHHHHHHHH
Q psy16959        106 PIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~  125 (366)
                      +++|+||+|+|||||...|.
T Consensus        24 ~~~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240          24 LTLIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            88999999999999999874

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=91.46  E-value=0.17  Score=46.74  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   34 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGL   34 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=91.46  E-value=0.17  Score=47.84  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl   61 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGL   61 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5678999999999999999999864

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=91.46  E-value=0.16  Score=48.91  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..++|+|+|++|||||++++.|..
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~~   28 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALED   28 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHH
Confidence            446899999999999999999964

>smart00175 RAB Rab subfamily of small GTPases

Probab=91.45  E-value=0.16  Score=43.11  Aligned_cols=21  Identities=33%  Similarity=0.716  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|+++||||+|+.+|...
T Consensus         3 v~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999854

Rab GTPases are implicated in vesicle trafficking.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=91.45  E-value=0.15  Score=42.94  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ...+|+|.|+-|+|||++++.+++..
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999999754

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.44  E-value=0.18  Score=45.46  Aligned_cols=25  Identities=16%  Similarity=0.153  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~   50 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGL   50 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5678999999999999999999864

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=91.44  E-value=0.18  Score=49.33  Aligned_cols=27  Identities=11%  Similarity=0.227  Sum_probs=23.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ..+.|+|.||+|+|||+++..|++..+
T Consensus        63 ~~~~ilL~G~pGtGKTtla~~lA~~l~   89 (327)
T TIGR01650        63 YDRRVMVQGYHGTGKSTHIEQIAARLN   89 (327)
T ss_pred             cCCcEEEEeCCCChHHHHHHHHHHHHC
Confidence            467899999999999999999998643

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=91.43  E-value=0.17  Score=44.90  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGL   49 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=91.43  E-value=0.14  Score=46.42  Aligned_cols=26  Identities=15%  Similarity=0.423  Sum_probs=22.6

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...+.+.|+|+.|+|||||..+|.+.
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34577889999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=91.41  E-value=0.18  Score=45.36  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGL   49 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PHA02244 ATPase-like protein

Probab=91.41  E-value=0.21  Score=49.81  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=23.7

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ....+|+|.||+|+|||+|+..|+...
T Consensus       117 ~~~~PVLL~GppGtGKTtLA~aLA~~l  143 (383)
T PHA02244        117 NANIPVFLKGGAGSGKNHIAEQIAEAL  143 (383)
T ss_pred             hcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998763

>cd01862 Rab7 Rab7 subfamily

Probab=91.41  E-value=0.17  Score=43.53  Aligned_cols=21  Identities=14%  Similarity=0.608  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||+|+.+|...
T Consensus         3 i~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.40  E-value=0.17  Score=45.65  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=91.37  E-value=0.17  Score=49.99  Aligned_cols=25  Identities=20%  Similarity=0.522  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.-|+|+||+||||||++..|...
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~  185 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISA  185 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcc
Confidence            3567999999999999999999876

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=91.37  E-value=0.2  Score=50.63  Aligned_cols=33  Identities=24%  Similarity=0.517  Sum_probs=25.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeee
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIP  136 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~  136 (366)
                      |+-|+|+||+|+|||+++..|++..+.-.+.++
T Consensus        47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd   79 (441)
T TIGR00390        47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   79 (441)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence            456899999999999999999986443333343

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=91.36  E-value=0.18  Score=44.01  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||.+.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999854

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=91.35  E-value=0.17  Score=46.81  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=22.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~   52 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGI   52 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999864

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=91.34  E-value=0.18  Score=47.01  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~   52 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLL   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999999854

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=91.34  E-value=4.1  Score=38.33  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=20.1

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +|.|+|..||||||++..|.+.
T Consensus         3 iIGlTGgIgSGKStVs~~L~~~   24 (244)
T PTZ00451          3 LIGLTGGIACGKSTVSRILREE   24 (244)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999875

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=91.33  E-value=0.16  Score=46.22  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=21.0

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.|+||+|+|||||++.|+..
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~   46 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGL   46 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCC
Confidence            78899999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=91.31  E-value=0.18  Score=53.75  Aligned_cols=40  Identities=25%  Similarity=0.498  Sum_probs=30.2

Q ss_pred             cccceeeeccccCCC-CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959         88 ILTYEEVSLYYPRSN-EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus        88 ~~~YE~V~~~~~~~~-~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ++-|=.|..+.  .. ...+++|+||+|||||+|++.+++..+
T Consensus       335 IlEyLAV~~l~--~~~kGpILcLVGPPGVGKTSLgkSIA~al~  375 (782)
T COG0466         335 ILEYLAVQKLT--KKLKGPILCLVGPPGVGKTSLGKSIAKALG  375 (782)
T ss_pred             HHHHHHHHHHh--ccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence            55666676663  33 446779999999999999999997543

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.28  E-value=0.25  Score=44.15  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..-.++|.||||+|||||.+.|-.+
T Consensus        36 aGECvvL~G~SG~GKStllr~LYaN   60 (235)
T COG4778          36 AGECVVLHGPSGSGKSTLLRSLYAN   60 (235)
T ss_pred             CccEEEeeCCCCCcHHHHHHHHHhc
Confidence            4567899999999999999999754

>cd00879 Sar1 Sar1 subfamily

Probab=91.27  E-value=0.17  Score=44.68  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .-|+|+|++|||||+|+.+|...
T Consensus        20 ~ki~ilG~~~~GKStLi~~l~~~   42 (190)
T cd00879          20 AKILFLGLDNAGKTTLLHMLKDD   42 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            34699999999999999999854

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.27  E-value=0.18  Score=46.85  Aligned_cols=25  Identities=16%  Similarity=0.284  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..+.|+||+|+|||||++.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRL   52 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=91.27  E-value=0.16  Score=51.46  Aligned_cols=24  Identities=17%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +++++|+||+||||||++.+|+..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~  246 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAK  246 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999999853

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=91.25  E-value=0.26  Score=46.54  Aligned_cols=24  Identities=29%  Similarity=0.617  Sum_probs=22.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...|+++||+||||||++..|.+.
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~  150 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEE  150 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCccccchHHHHHhhh
Confidence            578999999999999999999875

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK08727 hypothetical protein; Validated

Probab=91.25  E-value=0.17  Score=46.97  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+++|+||+|+|||.|++.++..
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~   64 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAA   64 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998653

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=91.24  E-value=0.18  Score=50.97  Aligned_cols=26  Identities=42%  Similarity=0.557  Sum_probs=22.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ...++|+||+|+|||++++.|++..+
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~  133 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILD  133 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhC
Confidence            45699999999999999999997643

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=91.22  E-value=0.2  Score=44.00  Aligned_cols=25  Identities=20%  Similarity=0.452  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~   51 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRL   51 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            4578999999999999999999864

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=91.20  E-value=0.17  Score=42.98  Aligned_cols=21  Identities=24%  Similarity=0.475  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.++...
T Consensus         2 i~i~G~~~~GKTsl~~~~~~~   22 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHA   22 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC
Confidence            689999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=91.17  E-value=0.17  Score=44.84  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++|+||+|||||+++..|+...
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~   25 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQS   25 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHc
Confidence            58899999999999999998764

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.16  E-value=1.7  Score=46.25  Aligned_cols=25  Identities=12%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ..++|+||.|+|||+++..|++..+
T Consensus        39 ha~Lf~Gp~GvGKTtlAr~lAk~Ln   63 (618)
T PRK14951         39 HAYLFTGTRGVGKTTVSRILAKSLN   63 (618)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4578999999999999999987643

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=91.14  E-value=0.13  Score=45.29  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=19.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHH
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      .+.+.+|+||+|+|||||+..|.
T Consensus        18 ~~g~~vi~G~Ng~GKStil~ai~   40 (202)
T PF13476_consen   18 SPGLNVIYGPNGSGKSTILEAIR   40 (202)
T ss_dssp             -SEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHH
Confidence            44688999999999999998875

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=91.13  E-value=0.18  Score=45.51  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=21.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .++.++|+||+|+||||+.+.++.
T Consensus        28 ~~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          28 SGRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             CCeEEEEECCCCCccHHHHHHHHH
Confidence            347899999999999999999874

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=91.11  E-value=0.17  Score=49.41  Aligned_cols=27  Identities=22%  Similarity=0.553  Sum_probs=23.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .++.++|.||+|+|||+++..+++..+
T Consensus        50 ~~~~~ll~GppG~GKT~la~~ia~~l~   76 (328)
T PRK00080         50 ALDHVLLYGPPGLGKTTLANIIANEMG   76 (328)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHHhC
Confidence            346799999999999999999998643

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=91.11  E-value=0.2  Score=45.28  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.2

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +.|.|+|+.|||||++++.|.+..
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~   25 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQK   25 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh
Confidence            368899999999999999998763

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=91.10  E-value=0.25  Score=53.18  Aligned_cols=48  Identities=21%  Similarity=0.317  Sum_probs=33.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHHHHHH
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRAQFEL  162 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~ef~~  162 (366)
                      .+..+.|+||+|||||||++.|+....            |..|+  .+|.+...++..++.+
T Consensus       478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~~i~~~~~~~lr~  527 (686)
T TIGR03797       478 PGEFVAIVGPSGSGKSTLLRLLLGFET------------PESGSVFYDGQDLAGLDVQAVRR  527 (686)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEEcCcCCHHHHHh
Confidence            456799999999999999999987521            22332  3666666566555443

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.10  E-value=1.6  Score=45.39  Aligned_cols=57  Identities=12%  Similarity=0.094  Sum_probs=35.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEec
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEK  177 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g  177 (366)
                      ..++|+||.|+|||+++..|++..+-.    ...+..            ....++....++.|.+.+.-+.++
T Consensus        39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~----~~~~~~------------pCg~C~~C~~i~~g~~~d~~eida   95 (509)
T PRK14958         39 HAYLFTGTRGVGKTTISRILAKCLNCE----KGVSAN------------PCNDCENCREIDEGRFPDLFEVDA   95 (509)
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHhcCC----CCCCcc------------cCCCCHHHHHHhcCCCceEEEEcc
Confidence            457899999999999999999864310    000100            122344566677777766665553

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=91.08  E-value=0.18  Score=48.17  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ++.|+|++||||||+++.|+..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~l   22 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSL   22 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999999999999875

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=91.08  E-value=0.19  Score=46.73  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+-.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRM   50 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5678999999999999999999853

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=91.07  E-value=0.2  Score=45.84  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~   57 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYAN   57 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999864

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=91.06  E-value=0.19  Score=46.97  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~   52 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGR   52 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd04124 RabL2 RabL2 subfamily

Probab=91.03  E-value=0.19  Score=43.18  Aligned_cols=21  Identities=33%  Similarity=0.781  Sum_probs=18.8

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++...
T Consensus         3 i~vvG~~~vGKTsli~~~~~~   23 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999998753

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.03  E-value=0.19  Score=46.75  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..+.|+||+|+|||||++.|+-.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999854

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=91.03  E-value=0.2  Score=46.44  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKL   50 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=91.02  E-value=0.19  Score=43.14  Aligned_cols=21  Identities=33%  Similarity=0.669  Sum_probs=18.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|..++...
T Consensus         5 i~i~G~~~vGKSsli~~~~~~   25 (166)
T cd01869           5 LLLIGDSGVGKSCLLLRFADD   25 (166)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            688999999999999999854

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=91.01  E-value=0.19  Score=46.26  Aligned_cols=25  Identities=16%  Similarity=0.373  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGF   48 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999854

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=91.01  E-value=0.17  Score=45.67  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             CcEEEeCCCCCChHHHHHHHH
Q psy16959        105 RPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      +.++|+||+|+|||||.+.+.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            689999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=91.01  E-value=0.2  Score=46.10  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRF   51 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0058|consensus

Probab=91.00  E-value=0.27  Score=52.36  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=21.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...+.|+||+|+||||++..|-+-
T Consensus       494 Ge~vALVGPSGsGKSTiasLL~rf  517 (716)
T KOG0058|consen  494 GEVVALVGPSGSGKSTIASLLLRF  517 (716)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998874

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=90.99  E-value=0.19  Score=43.62  Aligned_cols=20  Identities=35%  Similarity=0.667  Sum_probs=18.5

Q ss_pred             EEEeCCCCCChHHHHHHHHh
Q psy16959        107 IVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~  126 (366)
                      |+++|++|||||+|..++..
T Consensus         5 i~vvG~~~vGKTsli~~~~~   24 (170)
T cd04115           5 IIVIGDSNVGKTCLTYRFCA   24 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999975

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=90.97  E-value=0.19  Score=50.94  Aligned_cols=24  Identities=25%  Similarity=0.504  Sum_probs=21.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+..+.|+||+|+||||++.+|+.
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998875

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=90.96  E-value=0.2  Score=48.57  Aligned_cols=25  Identities=20%  Similarity=0.545  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++.++|+||+||||||++..|...
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~  155 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAE  155 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999865

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=90.96  E-value=0.2  Score=46.25  Aligned_cols=25  Identities=12%  Similarity=0.231  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (237)
T cd03252          27 PGEVVGIVGRSGSGKSTLTKLIQRF   51 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5678999999999999999999854

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.95  E-value=0.2  Score=46.77  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999854

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=90.93  E-value=0.2  Score=46.06  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~   71 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGI   71 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5578999999999999999999864

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>KOG0731|consensus

Probab=90.92  E-value=0.3  Score=52.64  Aligned_cols=44  Identities=18%  Similarity=0.470  Sum_probs=35.7

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILAR  167 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g  167 (366)
                      ||=++|+||+|+|||-||+.++-+                    .|+++.++|-.||.+++...
T Consensus       344 PkGvLL~GPPGTGKTLLAKAiAGE--------------------AgVPF~svSGSEFvE~~~g~  387 (774)
T KOG0731|consen  344 PKGVLLVGPPGTGKTLLAKAIAGE--------------------AGVPFFSVSGSEFVEMFVGV  387 (774)
T ss_pred             cCceEEECCCCCcHHHHHHHHhcc--------------------cCCceeeechHHHHHHhccc
Confidence            567999999999999999988755                    45677888888888776554

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.91  E-value=0.19  Score=47.59  Aligned_cols=25  Identities=20%  Similarity=0.135  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (271)
T PRK13638         26 LSPVTGLVGANGCGKSTLFMNLSGL   50 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4568999999999999999999854

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=90.91  E-value=0.2  Score=47.54  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   56 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGF   56 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999854

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=90.90  E-value=0.27  Score=51.02  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|...
T Consensus       347 ~G~~~~ivG~sGsGKSTL~~ll~g~  371 (529)
T TIGR02857       347 PGERVALVGPSGAGKSTLLNLLLGF  371 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567999999999999999999864

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.89  E-value=0.21  Score=46.95  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~   61 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLM   61 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4568999999999999999999853

>cd00154 Rab Rab family

Probab=90.88  E-value=0.21  Score=41.66  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|+++||||+|..+|...
T Consensus         3 i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999754

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=90.86  E-value=0.19  Score=45.45  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (202)
T cd03233          32 PGEMVLVLGRPGSGCSTLLKALANR   56 (202)
T ss_pred             CCcEEEEECCCCCCHHHHHHHhccc
Confidence            4568999999999999999999864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01868 Rab11_like Rab11-like

Probab=90.85  E-value=0.2  Score=42.87  Aligned_cols=21  Identities=38%  Similarity=0.729  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|+++||||+|..+|...
T Consensus         6 i~vvG~~~~GKSsli~~l~~~   26 (165)
T cd01868           6 IVLIGDSGVGKSNLLSRFTRN   26 (165)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999854

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=90.85  E-value=0.25  Score=53.42  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..+.|+||||+|||||++.|...
T Consensus       506 ~Ge~vaIvG~SGsGKSTLl~lL~gl  530 (711)
T TIGR00958       506 PGEVVALVGPSGSGKSTVAALLQNL  530 (711)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4567999999999999999999875

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=90.83  E-value=0.2  Score=47.03  Aligned_cols=25  Identities=20%  Similarity=0.407  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   62 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRM   62 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999853

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.83  E-value=0.19  Score=48.03  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   60 (289)
T PRK13645         36 KNKVTCVIGTTGSGKSTMIQLTNGL   60 (289)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999864

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.82  E-value=0.21  Score=46.68  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...++.|+||+|+|||||++.|+.
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         31 KNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999984

>cd01864 Rab19 Rab19 subfamily

Probab=90.82  E-value=0.2  Score=43.02  Aligned_cols=21  Identities=38%  Similarity=0.662  Sum_probs=18.6

Q ss_pred             cEEEeCCCCCChHHHHHHHHh
Q psy16959        106 PIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      =|+++|++|+|||+|+.+|..
T Consensus         5 kv~vvG~~~~GKTsli~~l~~   25 (165)
T cd01864           5 KIILIGDSNVGKTCVVQRFKS   25 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            378899999999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=90.82  E-value=0.21  Score=45.45  Aligned_cols=25  Identities=12%  Similarity=0.337  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~   50 (218)
T cd03290          26 TGQLTMIVGQVGCGKSSLLLAILGE   50 (218)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999854

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=90.82  E-value=0.18  Score=51.19  Aligned_cols=24  Identities=21%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +++++|+||+||||||++..|+..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~  244 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAAR  244 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999999888753

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=90.82  E-value=0.21  Score=45.43  Aligned_cols=26  Identities=15%  Similarity=0.359  Sum_probs=22.9

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .....+.|+||+|+|||||++.|+..
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~   47 (213)
T TIGR01277        22 ADGEIVAIMGPSGAGKSTLLNLIAGF   47 (213)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999999864

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=90.80  E-value=0.24  Score=50.13  Aligned_cols=25  Identities=40%  Similarity=0.517  Sum_probs=22.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..|+|.||+|+|||++++.|++..
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l  140 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARIL  140 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhc
Confidence            3569999999999999999999764

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>cd04123 Rab21 Rab21 subfamily

Probab=90.80  E-value=0.21  Score=42.17  Aligned_cols=21  Identities=33%  Similarity=0.681  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|..+|...
T Consensus         3 i~i~G~~~~GKStli~~l~~~   23 (162)
T cd04123           3 VVLLGEGRVGKTSLVLRYVEN   23 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999864

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=90.79  E-value=0.21  Score=47.61  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~laG~   50 (272)
T PRK13547         26 PGRVTALLGRNGAGKSTLLKALAGD   50 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999854

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=90.79  E-value=0.21  Score=47.30  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl   73 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRL   73 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999864

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=90.78  E-value=0.21  Score=43.16  Aligned_cols=21  Identities=38%  Similarity=0.672  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|+|||+|+.++...
T Consensus         6 i~vvG~~~~GKSsl~~~~~~~   26 (167)
T cd01867           6 LLLIGDSGVGKSCLLLRFSED   26 (167)
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999999864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.78  E-value=0.21  Score=47.34  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (271)
T PRK13632         34 EGEYVAILGHNGSGKSTISKILTGL   58 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4678999999999999999999854

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=90.76  E-value=0.18  Score=43.53  Aligned_cols=35  Identities=11%  Similarity=0.237  Sum_probs=26.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      |+++|+.++|||||...|...+ .+......+|+.|
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~-ilp~~~~~~T~~~   35 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRP-ILPSGVGPCTAVP   35 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS--SSSSSSSTTSSE
T ss_pred             CEEEcCCCCCHHHHHHHHHhcc-cCcccccccccce
Confidence            6899999999999999999753 3344444566665

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=90.75  E-value=0.22  Score=45.35  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (221)
T cd03244          29 PGEKVGIVGRTGSGKSSLLLALFRL   53 (221)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            4568999999999999999999854

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=90.75  E-value=0.21  Score=46.54  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+..+.|+||+|+|||||++.|+.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G   53 (252)
T PRK14239         30 PNEITALIGPSGSGKSTLLRSINR   53 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999974

>cd00157 Rho Rho (Ras homology) family

Probab=90.73  E-value=0.21  Score=42.79  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|..+|...
T Consensus         3 i~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           3 IVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999865

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.73  E-value=0.21  Score=47.11  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ....+.|+||+|+|||||++.|+.
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~G   69 (268)
T PRK14248         46 KHAVTALIGPSGCGKSTFLRSINR   69 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            456899999999999999999985

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=90.72  E-value=0.21  Score=43.33  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|+.++...
T Consensus         3 i~vvG~~~vGKTsli~~~~~~   23 (166)
T cd00877           3 LVLVGDGGTGKTTFVKRHLTG   23 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999998753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=90.72  E-value=0.22  Score=45.75  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~   29 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGL   29 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=90.72  E-value=0.22  Score=47.05  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=21.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+.++.|+||+|+|||||++.+.-
T Consensus        29 ~G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          29 KGEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999886

>cd04110 Rab35 Rab35 subfamily

Probab=90.72  E-value=0.2  Score=44.90  Aligned_cols=22  Identities=23%  Similarity=0.622  Sum_probs=19.7

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -|+|+|++|||||+|+.++...
T Consensus         8 kivvvG~~~vGKTsli~~l~~~   29 (199)
T cd04110           8 KLLIIGDSGVGKSSLLLRFADN   29 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999999854

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=90.72  E-value=0.21  Score=42.96  Aligned_cols=20  Identities=25%  Similarity=0.642  Sum_probs=18.3

Q ss_pred             EEEeCCCCCChHHHHHHHHh
Q psy16959        107 IVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~  126 (366)
                      |+++|++|||||+|..++..
T Consensus         2 i~vvG~~~~GKtsli~~~~~   21 (165)
T cd04146           2 IAVLGASGVGKSALVVRFLT   21 (165)
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            78999999999999999875

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=90.71  E-value=0.21  Score=43.78  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +++.|+|++|||||||+.+|+..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~   24 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPA   24 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999875

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd01865 Rab3 Rab3 subfamily

Probab=90.71  E-value=0.21  Score=43.00  Aligned_cols=21  Identities=24%  Similarity=0.624  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|..+|...
T Consensus         4 i~i~G~~~~GKSsli~~l~~~   24 (165)
T cd01865           4 LLIIGNSSVGKTSFLFRYADD   24 (165)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999864

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=90.71  E-value=0.2  Score=46.79  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGF   54 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>PRK05642 DNA replication initiation factor; Validated

Probab=90.70  E-value=0.21  Score=46.50  Aligned_cols=23  Identities=30%  Similarity=0.314  Sum_probs=20.6

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ++++|.||+|+|||.|+..++..
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~   68 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLR   68 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999988754

>cd01861 Rab6 Rab6 subfamily

Probab=90.69  E-value=0.22  Score=42.36  Aligned_cols=21  Identities=29%  Similarity=0.687  Sum_probs=18.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||+|..+|...
T Consensus         3 i~liG~~~~GKSsli~~l~~~   23 (161)
T cd01861           3 LVFLGDQSVGKTSIITRFMYD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999754

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=90.69  E-value=0.2  Score=45.74  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=21.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..-.+++.||||+|||||.+.++-
T Consensus        30 ~ge~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          30 SGELVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             CCCEEEEEcCCCccHHHHHHHHhc
Confidence            456899999999999999999874

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=90.69  E-value=0.22  Score=46.79  Aligned_cols=25  Identities=20%  Similarity=0.418  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl   53 (251)
T PRK09544         29 PGKILTLLGPNGAGKSTLVRVVLGL   53 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999854

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.67  E-value=0.22  Score=46.55  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (254)
T PRK14273         32 KNSITALIGPSGCGKSTFLRTLNRM   56 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999853

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.66  E-value=0.22  Score=46.45  Aligned_cols=24  Identities=25%  Similarity=0.446  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...++.|+||+|+|||||++.|+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255         30 QNEITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999975

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=90.65  E-value=0.28  Score=47.64  Aligned_cols=25  Identities=16%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..++|+||+||||||++..|+..
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~  167 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDE  167 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcc
Confidence            4568999999999999999999875

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd04157 Arl6 Arl6 subfamily

Probab=90.62  E-value=0.2  Score=42.57  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.+|...
T Consensus         2 i~~vG~~~~GKTsl~~~l~~~   22 (162)
T cd04157           2 ILVVGLDNSGKTTIINQLKPE   22 (162)
T ss_pred             EEEECCCCCCHHHHHHHHccc
Confidence            688999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=90.60  E-value=0.22  Score=46.78  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999853

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.60  E-value=0.22  Score=48.83  Aligned_cols=25  Identities=32%  Similarity=0.707  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .|+=|+.+||||||||.++.+|++-
T Consensus        49 ~PKNILMIGpTGVGKTEIARRLAkl   73 (444)
T COG1220          49 TPKNILMIGPTGVGKTEIARRLAKL   73 (444)
T ss_pred             CccceEEECCCCCcHHHHHHHHHHH
Confidence            4567999999999999999999974

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=90.60  E-value=0.22  Score=43.25  Aligned_cols=21  Identities=24%  Similarity=0.495  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|..++...
T Consensus         2 i~ivG~~~vGKTsli~~~~~~   22 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSE   22 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=90.59  E-value=0.23  Score=45.78  Aligned_cols=25  Identities=16%  Similarity=0.450  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl   50 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRF   50 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999854

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=90.59  E-value=0.2  Score=49.36  Aligned_cols=29  Identities=28%  Similarity=0.539  Sum_probs=24.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRF  131 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~  131 (366)
                      .+++++|.||.|+|||+|+..|.+-...+
T Consensus        87 ~krIl~L~GPvg~GKSsl~~~Lk~~le~y  115 (358)
T PF08298_consen   87 RKRILLLLGPVGGGKSSLAELLKRGLEEY  115 (358)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence            56889999999999999999998754433

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=90.59  E-value=0.24  Score=44.68  Aligned_cols=26  Identities=19%  Similarity=0.473  Sum_probs=22.7

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .....+.|+||+|+|||||++.|+..
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~   54 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGE   54 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            35678999999999999999999864

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd00880 Era_like Era (E

Probab=90.58  E-value=0.15  Score=42.23  Aligned_cols=19  Identities=32%  Similarity=0.560  Sum_probs=17.2

Q ss_pred             EeCCCCCChHHHHHHHHhc
Q psy16959        109 LIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       109 L~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|++|||||||+..|...
T Consensus         1 i~G~~gsGKstl~~~l~~~   19 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQ   19 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCc
Confidence            5899999999999999864

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0056|consensus

Probab=90.58  E-value=0.2  Score=51.37  Aligned_cols=52  Identities=25%  Similarity=0.461  Sum_probs=37.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHH
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI  164 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~  164 (366)
                      ..+.+.|+||||+||||++..|.+-.+.-.-++          +++|.+...|+.....+.+
T Consensus       563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI----------~iDgqdIrnvt~~SLRs~I  614 (790)
T KOG0056|consen  563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI----------TIDGQDIRNVTQSSLRSSI  614 (790)
T ss_pred             CCcEEEEECCCCCchhHHHHHHHHHhhccCceE----------EEcCchHHHHHHHHHHHhc
Confidence            467899999999999999999988654322232          3567777777766655543

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=90.57  E-value=0.22  Score=47.11  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (269)
T PRK11831         32 RGKITAIMGPSGIGKTTLLRLIGGQ   56 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999854

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.57  E-value=0.23  Score=46.31  Aligned_cols=24  Identities=21%  Similarity=0.475  Sum_probs=21.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ....+.|+||+|+|||||++.|+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262         28 KNQITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999985

>PRK09183 transposase/IS protein; Provisional

Probab=90.57  E-value=0.19  Score=47.55  Aligned_cols=25  Identities=32%  Similarity=0.585  Sum_probs=21.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++|+||+|+|||+|+..|+..
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998643

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=90.57  E-value=0.2  Score=52.75  Aligned_cols=30  Identities=20%  Similarity=0.403  Sum_probs=25.0

Q ss_pred             cCCCCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959         99 PRSNEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus        99 ~~~~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+...+..|+|+|++|||||||++.|++..
T Consensus       387 ~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L  416 (568)
T PRK05537        387 PRHKQGFTVFFTGLSGAGKSTIAKALMVKL  416 (568)
T ss_pred             cccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence            444455678999999999999999999864

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.56  E-value=0.23  Score=47.03  Aligned_cols=25  Identities=8%  Similarity=0.206  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl   58 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIGI   58 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=90.56  E-value=0.23  Score=46.08  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl   70 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGL   70 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=90.53  E-value=0.24  Score=45.39  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+-.
T Consensus        39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   63 (226)
T cd03248          39 PGEVTALVGPSGSGKSTVVALLENF   63 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999854

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=90.53  E-value=0.23  Score=46.38  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTL   49 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=90.51  E-value=0.22  Score=46.69  Aligned_cols=25  Identities=16%  Similarity=0.276  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..+.|+||+|+|||||++.|+..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSAR   55 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999864

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=90.51  E-value=0.32  Score=56.87  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||||||||||++.|...
T Consensus      1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265       1193 SKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999874

>cd04154 Arl2 Arl2 subfamily

Probab=90.51  E-value=0.21  Score=43.43  Aligned_cols=22  Identities=23%  Similarity=0.599  Sum_probs=19.7

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -|+|+|++|||||+|+.+|...
T Consensus        16 kv~ivG~~~~GKTsL~~~l~~~   37 (173)
T cd04154          16 RILILGLDNAGKTTILKKLLGE   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHccC
Confidence            4789999999999999999865

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PLN02348 phosphoribulokinase

Probab=90.50  E-value=0.22  Score=49.88  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+.+|-|.|++||||||++++|++..
T Consensus        48 ~p~IIGIaG~SGSGKSTfA~~L~~~L   73 (395)
T PLN02348         48 GTVVIGLAADSGCGKSTFMRRLTSVF   73 (395)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34456699999999999999999764

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=90.50  E-value=0.23  Score=45.19  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~   60 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGL   60 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.47  E-value=0.23  Score=47.05  Aligned_cols=25  Identities=24%  Similarity=0.411  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         38 RGKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4578999999999999999999854

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=90.47  E-value=0.23  Score=46.21  Aligned_cols=24  Identities=29%  Similarity=0.526  Sum_probs=21.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ....+.|+||+|+|||||++.|+-
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14240         28 ENQVTALIGPSGCGKSTFLRTLNR   51 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999985

>cd01878 HflX HflX subfamily

Probab=90.47  E-value=0.22  Score=44.63  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.4

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .-|+|+|++|||||+|...|...
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcc
Confidence            35789999999999999999865

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=90.46  E-value=0.23  Score=45.88  Aligned_cols=25  Identities=16%  Similarity=0.307  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..+.|+||+|+|||||++.|+-.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~i~G~   52 (238)
T cd03249          28 PGKTVALVGSSGCGKSTVVSLLERF   52 (238)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence            4678999999999999999999864

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=90.45  E-value=0.23  Score=43.21  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|+.+|...
T Consensus         2 i~~~G~~~~GKTsl~~~l~~~   22 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGE   22 (167)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=90.44  E-value=0.22  Score=46.96  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRH   60 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4568999999999999999999854

>cd04135 Tc10 TC10 subfamily

Probab=90.44  E-value=0.23  Score=42.90  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|+|||+|+.++...
T Consensus         3 i~i~G~~~~GKTsl~~~~~~~   23 (174)
T cd04135           3 CVVVGDGAVGKTCLLMSYAND   23 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999864

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=90.42  E-value=0.37  Score=50.73  Aligned_cols=49  Identities=16%  Similarity=0.310  Sum_probs=32.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHH
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFEL  162 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~  162 (366)
                      .+..+.|+||||+|||||++.|....+.-+..           ..+|.+..-++.++..+
T Consensus       375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I-----------~i~g~~i~~~~~~~lr~  423 (588)
T PRK11174        375 AGQRIALVGPSGAGKTSLLNALLGFLPYQGSL-----------KINGIELRELDPESWRK  423 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCcEE-----------EECCEecccCCHHHHHh
Confidence            45789999999999999999998642111111           13566666666655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	366
1va8_A	113	Solution Structure Of The Pdz Domain Of Pals1 Prote		2e-15
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		2e-14
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		4e-06
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		1e-04
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		1e-13
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		1e-04
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		3e-04
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		1e-13
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		1e-04
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		1e-04
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		1e-13
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		1e-04
3tvt_A	292	Structural Basis For Discs Large Interaction With P		7e-13
3tvt_A	292	Structural Basis For Discs Large Interaction With P		2e-06
3tvt_A	292	Structural Basis For Discs Large Interaction With P		4e-04
1lvg_A	198	Crystal Structure Of Mouse Guanylate Kinase In Comp		2e-12
1lvg_A	198	Crystal Structure Of Mouse Guanylate Kinase In Comp		8e-07
2j41_A	207	Crystal Structure Of Staphylococcus Aureus Guanylat		3e-12
1kgd_A	180	Crystal Structure Of The Guanylate Kinase-Like Doma		3e-11
1kgd_A	180	Crystal Structure Of The Guanylate Kinase-Like Doma		1e-07
4f4j_A	202	Conversion Of The Enzyme Guanylate Kinase Into A Mi		7e-11
3ney_A	197	Crystal Structure Of The Kinase Domain Of Mpp1P55 L		1e-10
3ney_A	197	Crystal Structure Of The Kinase Domain Of Mpp1P55 L		2e-06
1gky_A	187	Refined Structure Of The Complex Between Guanylate		8e-10
1ex6_A	186	Crystal Structure Of Unliganded Form Of Guanylate K		8e-10
3tau_A	208	Crystal Structure Of A Putative Guanylate Monophosp		7e-09
1z6g_A	218	Crystal Structure Of Guanylate Kinase From Plasmodi		1e-07
2qor_A	204	Crystal Structure Of Plasmodium Vivax Guanylate Kin		3e-07
1nf3_C	128	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-07
1rzx_A	98	Crystal Structure Of A Par-6 Pdz-Peptide Complex Le		5e-07
1x8s_A	102	Structure Of The Par-6 Pdz Domain With A Pals1 Inte		5e-07
1ry4_A	128	Nmr Structure Of The Crib-Pdz Module Of Par-6 Lengt		7e-07
2lc6_A	128	Solution Structure Of Par-6 Q144cL164C Length = 128		1e-06
3o46_A	93	Crystal Structure Of The Pdz Domain Of Mpp7 Length		2e-06
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		6e-06
3lnc_A	231	Crystal Structure Of Guanylate Kinase From Anaplasm		6e-06
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		7e-06
2vwf_A	58	Grb2 Sh3c (2) Length = 58		1e-05
3tr0_A	205	Structure Of Guanylate Kinase (Gmk) From Coxiella B		3e-05
2vvk_A	56	Grb2 Sh3c (1) Length = 56		4e-05
1kwa_A	88	Human CaskLIN-2 Pdz Domain Length = 88		5e-05
2ev8_A	97	Solution Structure Of The Erythroid P55 Pdz Domain		6e-05
2ejy_A	97	Solution Structure Of The P55 Pdz T85c Domain Compl		6e-05
1n7e_A	97	Crystal Structure Of The Sixth Pdz Domain Of Grip1		8e-05
1gri_A	217	Grb2 Length = 217		1e-04
1s96_A	219	The 2.0 A X-Ray Structure Of Guanylate Kinase From		2e-04
1znw_A	207	Crystal Structure Of Unliganded Form Of Mycobacteri		2e-04
1s4q_A	228	Crystal Structure Of Guanylate Kinase From Mycobact		2e-04
2e7k_A	91	Solution Structure Of The Pdz Domain From Human Mag		3e-04
1z8f_A	228	Guanylate Kinase Double Mutant A58c, T157c From Myc		3e-04
2an9_A	207	Crystal Structure Of Oligomeric E.Coli Guanylate Ki		3e-04
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		4e-04
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		4e-04
2dkr_A	93	Solution Structure Of The Pdz Domain From Human Lin		5e-04
1uep_A	103	Solution Structure Of The Third Pdz Domain Of Human		6e-04
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		6e-04

>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein Length = 113

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          GAT+RNE D+VI+ R+VKGG A+++GLLHEGDE+LEINGIEIRGK ++ V D+L
Sbjct: 40 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLL 93

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 15/101 (14%)
Query: 87  EILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-----SDRFAAAIPHTSRP 141
           ++L+YE V+      N  RP++++GP       ++ R+ +D      D+F + +PHT+RP
Sbjct: 91  KVLSYEPVN--QQEVNYTRPVIILGP-------MKDRVNDDLISEFPDKFGSCVPHTTRP 141
Query: 142 MKDGEVDGQDYHFIT-RAQFELDILARKFIEHGEYEKSYYG 181
            +D EVDG+DYHF+T R Q E DI   KFIE G+Y    YG
Sbjct: 142 KRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYG 182

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR---EG 290
           S  S    ++V A FDYD   D  +P +  G++F+ GDILHVI+  D  WWQA +   +G
Sbjct: 4   SEFSQKRSLYVRALFDYDKTKDSGLPSQ--GLNFKFGDILHVINASDDEWWQARQVTPDG 61
Query: 291 EEDHT 295
           E D  
Sbjct: 62  ESDEV 66

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQK 349
           G+ ++ L GTS+ ++R V   GK C+L++   ++K L+ + L P  IF+ P   E + + 
Sbjct: 174 GQYNNHLYGTSVQSVRAVAEKGKHCILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEM 233
Query: 350 RIRRGD 355
             R  D
Sbjct: 234 NKRLTD 239

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 11/100 (11%)
Query: 86  DEILTYEEVS---LYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
           D +L+YE V+   ++Y      RPI+++GP     ++    L E  D+F + +PHT+RP 
Sbjct: 515 DSVLSYETVTQMEVHY-----ARPIIILGPTKDRAND--DLLSEFPDKFGSCVPHTTRPK 567
Query: 143 KDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYG 181
           ++ E+DG+DYHF+ +R + E DI A KFIE G+Y    YG
Sbjct: 568 REYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYG 607

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
           G ++ A FDYD   D     + L  SF+ GD+LHVI   D  WWQA R
Sbjct: 427 GFYIRALFDYDKTKDCGFLSQAL--SFRFGDVLHVIDAGDEEWWQARR 472

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFE--LLK 347
           G+ +  L GTS+ ++R V   GK C+L++   +++ L+++ L P  IF+ P   E  L  
Sbjct: 599 GQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI 658
Query: 348 QKRI 351
            KRI
Sbjct: 659 NKRI 662

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 11/100 (11%)
Query: 86  DEILTYEEVS---LYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
           D +L+YE V+   ++Y R     PI+++GP     ++    L E  D+F + +PHT+RP 
Sbjct: 95  DSVLSYETVTQMEVHYAR-----PIIILGPTKDRAND--DLLSEFPDKFGSCVPHTTRPK 147
Query: 143 KDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYG 181
           ++ E+DG+DYHF+ +R + E DI A KFIE G+Y    YG
Sbjct: 148 REYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG 187

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
             G ++ A FDYD   D     +   +SF+ GD+LHVI   D  WWQA R
Sbjct: 5   ASGFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARR 52

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFE--LLK 347
           G+ +  L GTS+ ++R V   GK C+L++   +++ L+++ L P  IF+ P   E  L  
Sbjct: 179 GQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI 238
Query: 348 QKRI 351
            KRI
Sbjct: 239 NKRI 242

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 11/100 (11%)
Query: 86  DEILTYEEVS---LYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
           D +L+YE V+   ++Y R     PI+++GP     ++    L E  D+F + +PHT+RP 
Sbjct: 89  DSVLSYETVTQMEVHYAR-----PIIILGPTKDRAND--DLLSEFPDKFGSCVPHTTRPK 141
Query: 143 KDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYG 181
           ++ E+DG+DYHF+ +R + E DI A KFIE G+Y    YG
Sbjct: 142 REYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG 181

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFE 344
           G+ +  L GTS+ ++R V   GK C+L++   +++ L+++ L P  IF+ P   E
Sbjct: 173 GQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLE 227

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 15/102 (14%)
Query: 86  DEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-----SDRFAAAIPHTSR 140
           + +L+YE V       N  RP++++GP       L+ R+ +D      D+F + +PHT+R
Sbjct: 84  ENVLSYEAVQRL--SINYTRPVIILGP-------LKDRINDDLISEYPDKFGSCVPHTTR 134
Query: 141 PMKDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYG 181
           P ++ EVDG+DYHF+ +R Q E DI    FIE G+Y  + YG
Sbjct: 135 PKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYG 176

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
            ++V A FDYDP  D  +P +  G+ F+ GDILHV +  D  WWQA R
Sbjct: 5   SLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARR 50

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAP 340
           G+ +  L GTS+ ++R V   GK C+L++   ++K L+ + L P  +F+ P
Sbjct: 168 GQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKP 218

>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex With Gmp And Adp Length = 198

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 105 RPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
           RP+VL GP   G+  L ++L ++ S  F  ++ HT+R  + GE DG+DY+F+TR   + D
Sbjct: 5   RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 164 ILARKFIEHGEYEKSYYG 181
           I A  FIEH E+  + YG
Sbjct: 65  IAAGDFIEHAEFSGNLYG 82

>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex With Gmp And Adp Length = 198

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 296 LAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQK-RIR 352
           L GTS +A+R V    +ICVL++  Q ++ ++ +DL P  IFV PP  ++L+Q+ R+R
Sbjct: 80  LYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLR 137

>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate Monophosphate Kinase Length = 207

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 107 IVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
           IVL GP  +G+  +R+R+ ED S  +  +I  T+R M++GEVDG DY F TR  FE  I 
Sbjct: 9   IVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIK 68
Query: 166 ARKFIEHGEYEKSYYG 181
             +FIE+ EY  +YYG
Sbjct: 69  DDQFIEYAEYVGNYYG 84

>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of Human Cask Length = 180

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 101 SNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQ 159
           S+ ++ +VL+G   +GR  ++  L+ +  DRFA  IPHT+RP K  E +G++Y+F++  Q
Sbjct: 2   SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61
Query: 160 FELDILARKFIEHGEYEKSYYGLRTKLDKLQ 190
              DI   +++E+G +E + YG  TKL+ ++
Sbjct: 62  MMQDISNNEYLEYGSHEDAMYG--TKLETIR 90

>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of Human Cask Length = 180

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP 341
           G  +  + GT L+ IR +   G I +L++ PQ+LK+LR+++  PFV+F+A P
Sbjct: 75  GSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAP 126

>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic Spindle Orienting Protein By A Single Mutation That Inhibits Gmp- Induced Closing Length = 202

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 95  SLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYH 153
           +LY+ + +  RPIV+ GP   G+  L ++L  E  D F  ++P T+R  + GEV+G+DY+
Sbjct: 9   NLYF-QGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYN 67
Query: 154 FITRAQFELDILARKFIEHGEYEKSYYG 181
           F++  +F+  I   +FIE  ++  +YYG
Sbjct: 68  FVSVDEFKSMIKNNEFIEWAQFSGNYYG 95

>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55 Length = 197

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 104 KRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFEL 162
           ++ +VLIG   +GR  ++  L+ ++ ++F   +P+T+RP +  E DG++YHFI+  +   
Sbjct: 19  RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR 78
Query: 163 DILARKFIEHGEYEKSYYGLR 183
           +I A +F+E G Y+ + +G +
Sbjct: 79  NISANEFLEFGSYQGNMFGTK 99

>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55 Length = 197

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAP 340
           G     + GT  + +  +    KI +L++ PQ+LKI+R+++L PF++F+AP
Sbjct: 89  GSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAP 139

>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase And Its Substrate Gmp At 2.0 Angstroms Resolution Length = 187

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 105 RPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
           RPIV+ GP   G+  L ++L  E  D F  ++  T+R  + GEV+G+DY+F++  +F+  
Sbjct: 3   RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 62
Query: 164 ILARKFIEHGEYEKSYYG 181
           I   +FIE  ++  +YYG
Sbjct: 63  IKNNEFIEWAQFSGNYYG 80

>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase From Yeast Length = 186

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 105 RPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
           RPIV+ GP   G+  L ++L  E  D F  ++  T+R  + GEV+G+DY+F++  +F+  
Sbjct: 2   RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 164 ILARKFIEHGEYEKSYYG 181
           I   +FIE  ++  +YYG
Sbjct: 62  IKNNEFIEWAQFSGNYYG 79

>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste Kinase From Listeria Monocytogenes Egd-E Length = 208

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 107 IVLIGPPNIGRHELRQRLMEDSD-RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
           IVL GP  +G+  +R+ + +D +  F  +I  T+R  ++GE DG DY+F +R  FE  I 
Sbjct: 11  IVLSGPSGVGKGTVREAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQAIK 70
Query: 166 ARKFIEHGEYEKSYYG--LRTKLDKLQAGI 193
             K +E+ EY  +YYG  L    +KL AG+
Sbjct: 71  DGKXLEYAEYVGNYYGTPLEYVEEKLAAGV 100

>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium Falciparum Length = 218

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 99  PRS--NEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFI 155
           PR   N   P+V+ GP  +G+  L ++L+ E  + F  ++  T+R  ++ E +G DY+FI
Sbjct: 16  PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFI 75
Query: 156 TRAQFELDILARKFIEHGEYEKSYYG-LRTKLDK 188
            +  FE  +    F+E+  Y  ++YG L+++ DK
Sbjct: 76  DKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDK 109

>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase Length = 204

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 106 PIVLIGPPNIGRHEL-RQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
           P+V+ GP  +G+  L ++ L E   RF  +I  T+R  ++ E +G DY+F+ +  FE  +
Sbjct: 14  PLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL 73
Query: 165 LARKFIEHGEYEKSYYG-LRTKLD 187
              +F+E  +Y  ++YG L+++ D
Sbjct: 74  KEGQFLEFDKYANNFYGTLKSEYD 97

>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 128

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 10  AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
            + + R+V GGLA  TGLL   DE+LE+NGIE+ GKS+  V D+++ 
Sbjct: 66  GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA 112

>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex Length = 98

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
           + + R+V GGLA+ TGLL   DE++E+NGIE+ GK++  V D++V 
Sbjct: 39 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVA 85

>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal Ligand Length = 102

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
           + + R+V GGLA+ TGLL   DE++E+NGIE+ GK++  V D++V 
Sbjct: 41 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVA 87

>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6 Length = 128

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 10  AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
            + + R+V GGLA+ TGLL   DE++E+NGIE+ GK++  V D++V 
Sbjct: 67  GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVA 113

>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C Length = 128

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 10  AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
            + + R+V GGLA+ TGLL   DE++E+NGIE+ GK++  V D++V 
Sbjct: 67  GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVA 113

>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7 Length = 93

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1  GATIRN--EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          GATI+   +  A+IV R+ +GG ADR+GL+H GDE+ E+NGI +  K    +  IL
Sbjct: 18 GATIKKDEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQIL 73

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           G  +V A FD+DP++D      ELG  F++GD +HV+   DPNWW+    G+
Sbjct: 1   GSTYVQALFDFDPQED-----GELG--FRRGDFIHVMDNSDPNWWKGACHGQ 45

>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma Phagocytophilum Length = 231

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 107 IVLIGPPNIGRHELRQRLME-DSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
           +VL  P   G+  +  +L+E   +    ++  T+R  + GE +G+DY+F+ R +F     
Sbjct: 30  LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 166 ARKFIEHGEYEKSYYGL-RTKL-DKLQAGIPTL 196
             + IEH E   ++YG+ R  L D +  G+ TL
Sbjct: 90  NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTL 122

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           G  +V A FD+DP++D      ELG  F++GD +HV+   DPNWW+    G+
Sbjct: 1   GSTYVQALFDFDPQED-----GELG--FRRGDFIHVMDNSDPNWWKGACHGQ 45

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           G  +V A FD+DP++D      ELG  F++GD +HV+   DPNWW+    G+
Sbjct: 1   GPTYVQALFDFDPQED-----GELG--FRRGDFIHVMDNSDPNWWKGACHGQ 45

>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii Length = 205

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 102 NEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFE 161
           N+    ++  P   G+  L + L++       +I HT+RP + G+ +G DY FI   +F+
Sbjct: 5   NKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64
Query: 162 LDILARKFIEHGEYEKSYYGLRTK--LDKLQAG 192
             +    F+EH    + +YG      L +L+AG
Sbjct: 65  AXVKEGAFLEHATIYERHYGTEKDWVLRQLKAG 97

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           V A FD+DP++D      ELG  F++GD +HV+   DPNWW+    G+
Sbjct: 3   VQALFDFDPQED-----GELG--FRRGDFIHVMDNSDPNWWKGACHGQ 43

>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain Length = 88

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1  GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G T++ NE +  IV R++ GG+  R G LH GDEI EINGI +  +++  +  +L  + G
Sbjct: 16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG 75

>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain Length = 97

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1  GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSI 47
          G T++ NE  +  V R++ GG+  R G LH GDEILEING  +   S+
Sbjct: 27 GITLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV 74

>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed With The Glycophorin C F127c Peptide Length = 97

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 6  NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSI 47
          NE  +  V R++ GG+  R G LH GDEILEING  +   S+
Sbjct: 33 NEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV 74

>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 Length = 97

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 9  DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          D +I+  + KGGLA+RTG +H GD IL IN   ++GK +     +L  + G+ +T+
Sbjct: 30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTL 84

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 7/49 (14%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           +V A FD+DP++D      ELG  F++GD +HV+   DPNWW+    G+
Sbjct: 160 YVQALFDFDPQED-----GELG--FRRGDFIHVMDNSDPNWWKGACHGQ 201

>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli Length = 219

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 108 VLIGPPNIGRHELRQRLMEDSDRF--AAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
           ++  P   G+  L Q L++    +    ++ HT+R  + GEV G+ Y F+   +F+  I 
Sbjct: 20  IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEXIS 79
Query: 166 ARKFIEHGEYEKSYYG 181
              F+EH E   +YYG
Sbjct: 80  RDAFLEHAEVFGNYYG 95

>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium Tuberculosis Guanylate Kinase Length = 207

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
           R +VL GP  +G+  + + L E       ++  T+R  + GEVDG DYHFI   +F+  I
Sbjct: 21  RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 80
Query: 165 LARKFIEHGEYEKSYYGLRTKLDKLQA----GIPTL 196
              + +E  E     +   T    ++A    G+P L
Sbjct: 81  DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVL 116

>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
           R +VL GP  +G+  + + L E       ++  T+R  + GEVDG DYHFI   +F+  I
Sbjct: 24  RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 83
Query: 165 LARKFIEHGEYEKSYYGLRTKLDKLQA----GIPTL 196
              + +E  E     +   T    ++A    G+P L
Sbjct: 84  DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVL 119

>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk P55 Subfamily Member 2 Length = 91

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEING 39
          G T R EG  +++ R++ GG+  + GLLH GD I E+NG
Sbjct: 21 GVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNG 59

>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
           R +VL GP  +G+  + + L E       ++  T+R  + GEVDG DYHFI   +F+  I
Sbjct: 24  RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRCPRPGEVDGVDYHFIDPTRFQQLI 83
Query: 165 LARKFIEHGEYEKSYYGLRTKLDKLQA----GIPTL 196
              + +E  E     +   T    ++A    G+P L
Sbjct: 84  DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVL 119

>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In Complex With Gdp Length = 207

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 108 VLIGPPNIGRHELRQRLMEDSDRF--AAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
           ++  P   G+  L Q L++    +    ++ HT+R  + GEV G+ Y F+   +F+  I 
Sbjct: 8   IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 67
Query: 166 ARKFIEHGEYEKSYYG 181
              F+EH E   +YYG
Sbjct: 68  RDAFLEHAEVFGNYYG 83

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 7  EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          +G+ + V  ++ GG AD +G L  GD+IL +NGI++RG S       L G  GQ +T+
Sbjct: 25 DGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKG-AGQTVTI 81

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
           G  VIA +DY   +       E  +SF KG +++V+++DDP+WWQ    G
Sbjct: 18  GCQVIAMYDYAANN-------EDELSFSKGQLINVMNKDDPDWWQGEING 60

>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B Length = 93

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          + +   + + RV+ GG+ADR G L  GD++L +NG+ + G+      ++L    G
Sbjct: 26 KEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQG 80

>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 8  GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G  +++G V+  G ADR G LH GDE++ ++GI + GK+   V D++
Sbjct: 33 GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
           V+V  +V GGLADR G L  GD IL+I G  ++G +   V  +L
Sbjct: 39 GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVL 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	366
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	7e-35
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	9e-15
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	2e-34
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	4e-16
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	1e-33
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	5e-22
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	1e-15
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	1e-32
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	2e-20
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	6e-17
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-24
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-18
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	8e-17
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	7e-10
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	1e-23
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	1e-19
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	1e-18
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	1e-10
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	3e-10
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	2e-18
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	3e-04
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	8e-18
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	3e-05
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	1e-17
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	8e-04
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	2e-17
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	4e-17
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	4e-17
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	6e-17
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	9e-17
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	1e-16
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	4e-16
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	7e-16
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	1e-15
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	1e-15
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	1e-14
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	2e-14
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	4e-14
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	7e-13
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	7e-13
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	7e-13
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	1e-12
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	4e-12
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	8e-12
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	1e-11
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	3e-10
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	8e-06
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	8e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	1e-10
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	2e-10
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	2e-10
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	2e-10
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	2e-10
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	2e-10
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	3e-10
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	3e-10
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	3e-10
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	3e-10
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	4e-10
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	5e-10
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	5e-10
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	5e-10
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	7e-10
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	7e-10
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	8e-10
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	8e-10
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	8e-10
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	9e-10
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	9e-10
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	9e-10
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-09
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	1e-09
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	1e-09
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	1e-09
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	1e-09
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	1e-09
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	2e-09
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	2e-09
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	2e-09
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-09
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	2e-09
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	2e-09
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	2e-09
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	2e-09
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	2e-09
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-09
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-09
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-07
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	2e-09
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-07
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	2e-09
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-09
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	2e-09
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	2e-09
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	3e-09
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	3e-09
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	3e-09
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	3e-09
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	3e-09
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	3e-09
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	4e-09
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	4e-09
1awj_A	77	ITK; transferase, regulatory intramolecular comple	4e-09
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	4e-09
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	4e-09
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	5e-09
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	5e-09
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	5e-09
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	5e-09
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	6e-09
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	6e-09
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	6e-09
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	6e-09
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	6e-09
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	6e-09
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	6e-09
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	6e-09
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	7e-09
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	7e-09
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	7e-09
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	7e-09
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	7e-09
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	8e-09
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	8e-09
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	8e-09
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	8e-09
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	9e-09
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	9e-09
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	1e-08
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	1e-08
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-08
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	1e-08
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	1e-08
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	1e-08
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-08
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	1e-08
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	1e-08
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	2e-08
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-08
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	9e-08
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	2e-08
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	2e-08
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	2e-08
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	2e-08
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	2e-08
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-08
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	2e-08
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	2e-08
2opg_A	98	Multiple PDZ domain protein; structural protein, s	2e-08
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	2e-08
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	3e-08
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	3e-08
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	3e-08
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	3e-08
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	3e-08
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	3e-08
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	3e-08
1wxb_A	68	Epidermal growth factor receptor pathway substrate	4e-08
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	4e-08
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-08
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	4e-08
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	4e-08
3u23_A	65	CD2-associated protein; structural genomics, struc	4e-08
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	4e-08
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	4e-08
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-08
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	4e-08
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	4e-08
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	4e-08
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	4e-08
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	4e-08
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	5e-08
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	5e-08
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	5e-08
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	5e-08
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	5e-08
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	5e-08
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	6e-08
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	6e-08
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	6e-08
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	6e-08
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	6e-08
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	6e-08
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	7e-08
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	7e-08
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	7e-08
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	7e-08
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	7e-08
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	7e-08
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	7e-08
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	7e-08
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	8e-08
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	8e-08
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	8e-08
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	8e-08
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	9e-08
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	9e-08
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	9e-08
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	1e-07
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	1e-07
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	1e-07
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-07
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	1e-07
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	1e-07
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	1e-07
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	1e-07
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	1e-07
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-07
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-07
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	2e-07
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	2e-07
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	2e-07
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	2e-07
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	2e-07
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	2e-07
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-07
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	2e-07
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	2e-07
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	2e-07
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-07
2awx_A	105	Synapse associated protein 97; membrane protein, s	2e-07
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	2e-07
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-07
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	3e-07
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	3e-07
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	3e-07
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	3e-07
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	3e-07
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	3e-07
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	3e-07
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	3e-07
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	3e-07
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	3e-07
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-07
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-04
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	4e-07
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	4e-07
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	4e-07
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	4e-07
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	4e-07
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	5e-07
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	5e-07
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	5e-07
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	5e-07
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	5e-07
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	6e-07
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	6e-07
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	6e-07
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	6e-07
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	7e-07
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	7e-07
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	7e-07
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	7e-07
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	8e-07
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	8e-07
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	9e-07
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	1e-06
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	1e-06
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	1e-06
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-06
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	1e-06
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-06
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	1e-06
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	1e-06
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	1e-06
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	1e-06
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	1e-06
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-06
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	1e-06
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	2e-06
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	2e-06
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	2e-06
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	2e-06
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	2e-06
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	2e-06
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	2e-06
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	2e-06
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	2e-06
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	2e-06
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	2e-06
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	2e-06
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	2e-06
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	2e-06
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-06
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-06
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	2e-06
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	2e-06
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	3e-06
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	1e-04
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	3e-06
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	3e-06
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	3e-06
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	3e-06
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	3e-06
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	3e-06
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	3e-06
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	3e-06
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	3e-06
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	3e-06
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	4e-06
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	4e-06
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	4e-06
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	4e-06
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	5e-06
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	5e-06
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	5e-06
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	5e-06
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	5e-06
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	5e-06
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	5e-06
1i07_A	60	Epidermal growth factor receptor kinase substrate	5e-06
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	5e-06
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	9e-06
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	6e-06
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	6e-06
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	6e-06
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	6e-06
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	6e-06
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	8e-06
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	8e-06
2d90_A	102	PDZ domain containing protein 1; structural genomi	8e-06
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	9e-06
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	9e-06
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	9e-06
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	1e-05
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	1e-05
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	1e-05
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	1e-05
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	1e-05
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	1e-05
2ego_A	96	General receptor for phosphoinositides 1- associat	1e-05
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-05
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	2e-05
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	2e-05
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	2e-05
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-05
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	2e-05
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	2e-05
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	2e-05
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	2e-05
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	3e-05
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	3e-05
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	4e-05
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	4e-05
3khf_A	99	Microtubule-associated serine/threonine-protein ki	4e-05
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	5e-05
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	6e-05
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	6e-05
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	8e-05
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	8e-05
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	1e-04
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	1e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-04
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	2e-04
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	2e-04
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-04
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	2e-04
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	2e-04
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	3e-04
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-04
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	3e-04
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	4e-04
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	8e-04
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	9e-04

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Length = 180

 Score =  125 bits (316), Expect = 7e-35
 Identities = 33/88 (37%), Positives = 57/88 (64%), Gaps = 3/88 (3%)

Query: 101 SNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQ 159
           S+ ++ +VL+G   +GR  ++  L+ +  DRFA  IPHT+RP K  E +G++Y+F++  Q
Sbjct: 2   SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61

Query: 160 FELDILARKFIEHGEYEKSYYGLRTKLD 187
              DI   +++E+G +E + YG  TKL+
Sbjct: 62  MMQDISNNEYLEYGSHEDAMYG--TKLE 87

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Length = 180

 Score = 71.0 bits (175), Expect = 9e-15
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFE 344
           GT L+ IR +   G I +L++ PQ+LK+LR+++  PFV+F+A P   
Sbjct: 83  GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTIT 129

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197

 Score =  124 bits (314), Expect = 2e-34
 Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 90  TYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVD 148
            +            ++ +VLIG   +GR  ++  L+ ++ ++F   +P+T+RP +  E D
Sbjct: 5   HHHSSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEED 64

Query: 149 GQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQA 191
           G++YHFI+  +   +I A +F+E G Y+ + +G  TK + +  
Sbjct: 65  GKEYHFISTEEMTRNISANEFLEFGSYQGNMFG--TKFETVHQ 105

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197

 Score = 74.9 bits (185), Expect = 4e-16
 Identities = 17/58 (29%), Positives = 33/58 (56%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355
           GT  + +  +    KI +L++ PQ+LKI+R+++L PF++F+AP       +   +   
Sbjct: 97  GTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQK 154

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score =  125 bits (316), Expect = 1e-33
 Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 9/120 (7%)

Query: 70  KTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDS 128
             +  +  +  +    D +L+YE V+      +  RPI+++GP    +      L+ E  
Sbjct: 73  LKAKDWGSSSGSQGREDSVLSYETVTQMEV--HYARPIIILGP---TKDRANDDLLSEFP 127

Query: 129 DRFAAAIPHTSRPMKDGEVDGQDYHFIT-RAQFELDILARKFIEHGEYEKSYYGLRTKLD 187
           D+F + +PHT+RP ++ E+DG+DYHF++ R + E DI A KFIE G+Y    YG  T + 
Sbjct: 128 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG--TSVQ 185

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 93.7 bits (233), Expect = 5e-22
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
           G ++ A FDYD   D     +   +SF+ GD+LHVI   D  WWQA R   +  T
Sbjct: 1   GFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSET 53

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 17/58 (29%), Positives = 33/58 (56%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355
           GTS+ ++R V   GK C+L++   +++ L+++ L P  IF+ P   E + +   R  +
Sbjct: 181 GTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITE 238

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score =  122 bits (308), Expect = 1e-32
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query: 55  VGLTGQEMTMG--REAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGP 112
           V    ++  +G      +     R  + +    + +L+YE V       N  RP++++GP
Sbjct: 51  VLGDNEDEQIGIVPSKRRWERKMRARDRSVKSEENVLSYEAVQRLSI--NYTRPVIILGP 108

Query: 113 PNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFIT-RAQFELDILARKFI 170
               +  +   L+ E  D+F + +PHT+RP ++ EVDG+DYHF++ R Q E DI    FI
Sbjct: 109 ---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFI 165

Query: 171 EHGEYEKSYYGLRTKLD 187
           E G+Y  + YG  T + 
Sbjct: 166 EAGQYNDNLYG--TSVA 180

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 89.0 bits (221), Expect = 2e-20
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
           ++V A FDYDP  D  +P +  G+ F+ GDILHV +  D  WWQA R   ++  
Sbjct: 6   LYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNED 57

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 79.4 bits (196), Expect = 6e-17
 Identities = 16/58 (27%), Positives = 32/58 (55%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355
           GTS+ ++R V   GK C+L++   ++K L+ + L P  +F+ P   + + +   R  +
Sbjct: 176 GTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE 233

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  104 bits (259), Expect = 1e-24
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 25/183 (13%)

Query: 18  KGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG----------RE 67
             G   +      GD +  I+                V    +   +G          RE
Sbjct: 441 DCGFLSQALSFRFGDVLHVIDA-----GDEEWWQARRVHSDSETDDIGFIPSKRRVERRE 495

Query: 68  AWKTSHA-FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM- 125
             +     +  +  +    D +L+YE V+      +  RPI+++GP    +      L+ 
Sbjct: 496 WSRLKAKDWGSSSGSQGREDSVLSYETVTQM--EVHYARPIIILGPT---KDRANDDLLS 550

Query: 126 EDSDRFAAAIPHTSRPMKDGEVDGQDYHFIT-RAQFELDILARKFIEHGEYEKSYYGLRT 184
           E  D+F + +PHT+RP ++ E+DG+DYHF++ R + E DI A KFIE G+Y    YG  T
Sbjct: 551 EFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYG--T 608

Query: 185 KLD 187
            + 
Sbjct: 609 SVQ 611

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 85.7 bits (211), Expect = 2e-18
 Identities = 58/310 (18%), Positives = 98/310 (31%), Gaps = 21/310 (6%)

Query: 1   GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
           G       +++ V ++++GG A + G L  GD+IL +N + +           L      
Sbjct: 176 GNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAAL---KNT 232

Query: 61  EMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHEL 120
              +  +  K S+A+    +   D+    +    +     S           P   R   
Sbjct: 233 YDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYS 292

Query: 121 RQRLMEDSDRFAAAIPHTSRPMKDGE------VDGQDYHFITRAQFELDILARK--FIEH 172
                   +      P      +         V G+D   I  +       A     +  
Sbjct: 293 PVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRK 352

Query: 173 GEYEKSYYGLRTK-------LDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVF 225
           G+   S  G+  +          L+    T+        E +   E    +L     N  
Sbjct: 353 GDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSS 412

Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
               T      +   G ++ A FDYD   D     +   +SF+ GD+LHVI   D  WWQ
Sbjct: 413 LGSGTASL-RSNPKRGFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQ 469

Query: 286 AYREGEEDHT 295
           A R   +  T
Sbjct: 470 ARRVHSDSET 479

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 81.1 bits (199), Expect = 8e-17
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQK 349
           G+ +  L GTS+ ++R V   GK C+L++   +++ L+++ L P  IF+ P   E + + 
Sbjct: 599 GQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI 658

Query: 350 RIRRGD 355
             R  +
Sbjct: 659 NKRITE 664

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 59.5 bits (143), Expect = 7e-10
 Identities = 11/49 (22%), Positives = 25/49 (51%)

Query: 6   NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
            +  ++ + +++ GG A + G L   D IL +N +++R  +     + L
Sbjct: 86  GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL 134

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score =   99 bits (248), Expect = 1e-23
 Identities = 45/355 (12%), Positives = 97/355 (27%), Gaps = 45/355 (12%)

Query: 1   GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
           G  +       + V  V++   A + GL  EGD+IL +N ++            L+ L  
Sbjct: 22  GLRLAGGNDVGIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTNIIREEAVLFLLDLPK 80

Query: 60  QEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHE 119
            E              +   +      ++     +  ++    E    +      + R  
Sbjct: 81  GEEV------TILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVV 134

Query: 120 LRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSY 179
                 +     A  I    + ++ G +  ++          +     K       +   
Sbjct: 135 DTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRA---EQLASVQYTLPKTAGGDRADFWR 191

Query: 180 YGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDG 239
           +       +               T+    + +   E GF +                 G
Sbjct: 192 FRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIF------------G 239

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGT 299
               V        E D+Y   K                            G +  +    
Sbjct: 240 PIADVAREKLAREEPDIYQIAKSEPR----------------------DAGTDQRSSGII 277

Query: 300 SLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
            L  I+ +++  K  +L++ P ++  L  +   P V+F+ P   + +K  R+R  
Sbjct: 278 RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLC 332

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 82.5 bits (204), Expect = 1e-19
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          GAT+RNE D+VI+ R+VKGG A+++GLLHEGDE+LEINGIEIRGK ++ V D+L  + G
Sbjct: 40 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHG 98

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 84.9 bits (209), Expect = 1e-18
 Identities = 13/60 (21%), Positives = 23/60 (38%)

Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEED 293
             K+      V  +  Y    +  +P   + +SF+  D LHV  + + +WW      E  
Sbjct: 31  KAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGC 90

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 61.0 bits (147), Expect = 1e-10
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 287 YREGEEDHTLAGTSLDAIRTVVNAGKICVLNL-HPQSLKILRSSDLKPFVIFVAPPPFEL 345
                       + ++ I  +    ++ VL+         L  + L P V++V     ++
Sbjct: 205 RSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKV 264

Query: 346 LKQKRIRRG 354
           L++    RG
Sbjct: 265 LQRLIKSRG 273

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 60.2 bits (145), Expect = 3e-10
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 13/126 (10%)

Query: 66  REAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRH---ELRQ 122
                   A     H+           E +  Y      RP+VL+GP   G      +++
Sbjct: 104 MRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQK 163

Query: 123 RLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181
            L      RF   I  T R   D  +         +     +      IE      S   
Sbjct: 164 ALFDFLKHRFEGRISIT-RVTADISL--------AKRSVLNNPSKHAIIERSNTRSSLAE 214

Query: 182 LRTKLD 187
           ++++++
Sbjct: 215 VQSEIE 220

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Length = 198

 Score = 79.8 bits (198), Expect = 8e-18
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 105 RPIVLIGPPNIGRHELRQRLME-DSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
           RP+VL GP   G+  L ++L +  S  F  ++ HT+R  + GE DG+DY+F+TR   + D
Sbjct: 5   RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64

Query: 164 ILARKFIEHGEYEKSYYG--LRTKLDKLQAGIPTLNFDI 200
           I A  FIEH E+  + YG                +  D+
Sbjct: 65  IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICV-LDV 102

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Length = 198

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIR-RG 354
           GTS +A+R V    +ICVL++  Q ++ ++ +DL P  IFV PP  ++L+Q R+R R 
Sbjct: 82  GTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQ-RLRLRN 138

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Length = 204

 Score = 79.5 bits (197), Expect = 1e-17
 Identities = 27/99 (27%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 105 RPIVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
            P+V+ GP  +G+  L ++++ +   RF  +I  T+R  ++ E +G DY+F+ +  FE  
Sbjct: 13  PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72

Query: 164 ILARKFIEHGEYEKSYYG-LRTKL-DKLQAGIPTLNFDI 200
           +   +F+E  +Y  ++YG L+++    +  G   L F++
Sbjct: 73  LKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICL-FEM 110

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Length = 204

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFV--IFVAPPPFELLKQKRIR-RG 354
           GT        V  GKIC+  ++   +K L+ S        IFV PP  ++L   R++ R 
Sbjct: 90  GTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILL-GRLKNRN 148

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Length = 207

 Score = 78.8 bits (195), Expect = 2e-17
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
           R +VL GP  +G+  + + L E       ++  T+R  + GEVDG DYHFI   +F+  I
Sbjct: 21  RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 80

Query: 165 LARKFIEHGEYEKSYYGLRTKL----DKLQAGIPTLNFDI 200
              + +E  E     +   T           G+P L  ++
Sbjct: 81  DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVL-IEV 119

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Length = 218

 Score = 78.4 bits (194), Expect = 4e-17
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 4/102 (3%)

Query: 102 NEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQF 160
           N   P+V+ GP  +G+  L ++L+ +  + F  ++  T+R  ++ E +G DY+FI +  F
Sbjct: 21  NNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIF 80

Query: 161 ELDILARKFIEHGEYEKSYYG-LRTKLDK-LQAGIPTLNFDI 200
           E  +    F+E+  Y  ++YG L+++ DK  +     L F++
Sbjct: 81  EDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICL-FEM 121

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 1  GATIRN--EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
          GATI+   +  A+IV R+++GG ADR+GL+H GDE+ E+NGI +  K    +  IL    
Sbjct: 18 GATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ 77

Query: 59 G 59
          G
Sbjct: 78 G 78

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Length = 207

 Score = 77.5 bits (192), Expect = 6e-17
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 101 SNEK-RPIVLIGPPNIGRHELRQRLMEDSD-RFAAAIPHTSRPMKDGEVDGQDYHFITRA 158
            NEK   IVL GP  +G+  +R+R+ ED    +  +I  T+R M++GEVDG DY F TR 
Sbjct: 2   DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRD 61

Query: 159 QFELDILARKFIEHGEYEKSYYG--LRTKLDKLQAGIPTLNFDI 200
            FE  I   +FIE+ EY  +YYG  ++   D +  G      +I
Sbjct: 62  AFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVF-LEI 104

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Length = 208

 Score = 77.1 bits (191), Expect = 9e-17
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 105 RPIVLIGPPNIGRHELRQRLMEDSD-RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
             IVL GP  +G+  +R+ + +D +  F  +I  T+R  ++GE DG DY+F +R  FE  
Sbjct: 9   LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQA 68

Query: 164 ILARKFIEHGEYEKSYYG--LRTKLDKLQAGIPTLNFDI 200
           I   K +E+ EY  +YYG  L    +KL AG+     +I
Sbjct: 69  IKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIF-LEI 106

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 1  GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G  ++ NE  +  V R++ GG+  R G LH GDEILEING  +   S+  +   +    G
Sbjct: 27 GICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKG 86

Query: 60 Q 60
           
Sbjct: 87 M 87

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Length = 205

 Score = 75.2 bits (186), Expect = 4e-16
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILA 166
            ++  P   G+  L + L++       +I HT+RP + G+ +G DY FI   +F+  +  
Sbjct: 10  FIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKE 69

Query: 167 RKFIEHGEYEKSYYG-LRTKLDK-LQAGIPTLNFDI 200
             F+EH    + +YG  +  + + L+AG   L  +I
Sbjct: 70  GAFLEHATIYERHYGTEKDWVLRQLKAGRDVL-LEI 104

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 71.2 bits (175), Expect = 7e-16
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 1  GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G T++ NE +  IV R++ GG+  R G LH GDEI EINGI +  +++  +  +L  + G
Sbjct: 16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG 75

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 76.9 bits (188), Expect = 1e-15
 Identities = 45/375 (12%), Positives = 110/375 (29%), Gaps = 85/375 (22%)

Query: 1   GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
           G  +       + V  V++   A + GL  EG                    D ++ +  
Sbjct: 14  GLRLAGGNDVGIFVAGVLEDSPAAKEGL-EEG--------------------DQILRVNN 52

Query: 60  QEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHE 119
            + T                         +  EE  L+     +   + ++       + 
Sbjct: 53  VDFTN------------------------IIREEAVLFLLDLPKGEEVTILAQKKKDVYR 88

Query: 120 LRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQ--DYHFITRAQFELDI---LARKFIEHGE 174
            R    +  D F               +     +   +    +   +   LA +  ++ +
Sbjct: 89  -RIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHK 147

Query: 175 YEKSYYGLRTKLDKLQAG-IPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQT 233
                        +++ G IP          E   + +   P+        F   R  ++
Sbjct: 148 -------------EVERGIIPN-----KNRAEQLASVQYTLPKTAGGDRADFWRFRGLRS 189

Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDIL-----HVI----SQDDPNWW 284
           S ++       ++      +   Y         F +   +      V     ++++P+ +
Sbjct: 190 SKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIY 249

Query: 285 QAYRE-----GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVA 339
           Q  +      G +  +     L  I+ +++  K  +L++ P ++  L  +   P V+F+ 
Sbjct: 250 QIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLN 309

Query: 340 PPPFELLKQKRIRRG 354
           P   + +K  R+R  
Sbjct: 310 PDSKQGVKTMRMRLC 324

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 70.6 bits (173), Expect = 1e-15
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G T R EG  +++ R++ GG+  + GLLH GD I E+NG  + G     + ++L   +G
Sbjct: 21 GVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASG 78

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Length = 231

 Score = 71.5 bits (176), Expect = 1e-14
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 107 IVLIGPPNIGRHELRQRLME-DSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
           +VL  P   G+  +  +L+E   +    ++  T+R  + GE +G+DY+F+ R +F     
Sbjct: 30  LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89

Query: 166 ARKFIEHGEYEKSYYG-LRTKLDK-LQAGIPTLNFDI 200
             + IEH E   ++YG  R  L+  +  G+ TL   I
Sbjct: 90  NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTL-LVI 125

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Length = 219

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 107 IVLIGPPNIGRHELRQRLME--DSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
            ++  P   G+  L Q L++         ++ HT+R  + GEV G+ Y F+   +F+  I
Sbjct: 19  YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 78

Query: 165 LARKFIEHGEYEKSYYG-LRTKL-DKLQAGIPTLNFDI 200
               F+EH E   +YYG  R  +   L  G+     DI
Sbjct: 79  SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVF-LDI 115

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 67.6 bits (165), Expect = 4e-14
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 6   NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
            +   + + R+V GGLA  TGLL   DE+LE+NGIE+ GKS+  V D+++  + 
Sbjct: 62  EKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSR 115

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 63.6 bits (155), Expect = 7e-13
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 1  GATIR----NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G ++          + + R+    + DR+G LH GD IL I+G  +   S+     +L
Sbjct: 30 GISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLL 87

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 63.1 bits (154), Expect = 7e-13
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 1  GATIR---NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57
          G TI       D +I+  + KGGLA+RTG +H GD IL IN   ++GK +     +L   
Sbjct: 19 GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM- 77

Query: 58 TGQEMTM 64
           G+ +T+
Sbjct: 78 AGETVTL 84

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 62.8 bits (153), Expect = 7e-13
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 1  GATIRNEGD-AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-T 58
          G TI + G     + R+  GG+ D    +  GD I  ING  I G   + V   L  L  
Sbjct: 19 GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK 78

Query: 59 GQEMTM 64
           +  TM
Sbjct: 79 EELFTM 84

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          G ++        +  +++G   +    L  GD I + NG  + G    +   +  G  G+
Sbjct: 23 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGK 82

Query: 61 -EMTMGRE 67
            M + R 
Sbjct: 83 VSMEVTRP 90

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 1  GATIRNEGDA-----VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV 55
          G  +   G        ++  ++ GG A+R+G L  GD +  ING  + G  +      + 
Sbjct: 24 GVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVR 83

Query: 56 GLTGQ 60
              Q
Sbjct: 84 ETKSQ 88

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 60.5 bits (147), Expect = 8e-12
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          G ++        +  +++G   +    L  GD I + NG  + G    +   +  G  G+
Sbjct: 17 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK 76

Query: 61 -EMTMGRE 67
            M + R 
Sbjct: 77 VSMEVTRP 84

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 63.7 bits (154), Expect = 1e-11
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
              LD +R +    K  +L++ P +++ L      P V+F  P     LK  R    
Sbjct: 185 IIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLA 241

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 59.8 bits (144), Expect = 3e-10
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 16/67 (23%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN---------WWQAYRE 289
           G   ++  HF+ +P           G+ F +GD+ HV+    P           W A R 
Sbjct: 2   GDSFYIRTHFELEP-------SPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRM 54

Query: 290 GEEDHTL 296
           G +    
Sbjct: 55  GRDLREQ 61

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 66  REAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM 125
           R A KT+   R              YE V L     + KRP+V++GP         Q+L 
Sbjct: 109 RGAKKTTQRSREDLSALTRQGRYPPYERVVLREA--SFKRPVVILGPV---ADIAMQKLT 163

Query: 126 -EDSDRF--AAAIPHTSRPMKDGEVD 148
            E  D+F  A  +  T  P K  ++D
Sbjct: 164 AEMPDQFEIAETVSRTDSPSKIIKLD 189

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           S   G   +A  DY   D+      +L  SF +G+ + ++ Q   +WW   R G  
Sbjct: 3   SGSSGEEFVAIADYAATDE-----TQL--SFLRGEKILILRQTTADWWWGERAGCC 51

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 8e-11
 Identities = 46/302 (15%), Positives = 87/302 (28%), Gaps = 84/302 (27%)

Query: 77  HTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIP 136
           H  H H D +      E    Y      + I+                +++ D     + 
Sbjct: 1   HHHHHHMDFE----TGEHQYQY------KDIL---------SVFEDAFVDNFD--CKDVQ 39

Query: 137 HTSRP-MKDGEVDG--QDYHFITRAQFELDILARK-------FIEHGEYEKSYYGLRTKL 186
              +  +   E+D        ++        L  K       F+E      +Y  L + +
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPI 98

Query: 187 DKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSD-----RTKQTSHKSDGG- 240
            K +   P++   +Y           ND ++ F+K+NV R       R      +     
Sbjct: 99  -KTEQRQPSMMTRMY---IEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 241 ---GM-----HVIAH---FDYDPEDDMYIPCK----ELGMSFQKGDILHVI----SQDDP 281
              G+       +A      Y  +  M    K     L        +L ++     Q DP
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 282 NWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNL-----HPQSLKILR----SSDLK 332
           NW         DH+        I+  +++ +  +  L     +   L +L     +    
Sbjct: 212 NWTS-----RSDHS------SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 333 PF 334
            F
Sbjct: 261 AF 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 53/384 (13%), Positives = 102/384 (26%), Gaps = 108/384 (28%)

Query: 30  EGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGR---EAWKTSHAFRHTEHTHFDVD 86
           E D I+              +   L  L+ QE  + +   E  + ++ F  +        
Sbjct: 50  EIDHIIMSKDAVSG---TLRLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 87  EILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHE----LRQRLMEDSDRFAAAIPHTSRPM 142
             +          R        +    N+ R +    LRQ L+E             RP 
Sbjct: 105 PSMMTRMYIEQ--RDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------------RPA 150

Query: 143 KDGEVDG--------------QDYHFITRAQFE---------------LDILARKFI--- 170
           K+  +DG                Y    +  F+               L++L +      
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 171 -EHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLT-DEINDPELGFSKFNVFRSD 228
                       ++ ++  +QA +  L           L    + + +  ++ FN     
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKA-WNAFN-LSC- 266

Query: 229 RTKQTSHKS---DGGGMHVIAHFDYDPEDDMYIP-------CKELGMSFQ-------KGD 271
           +   T+      D        H   D       P        K L    Q         +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 272 ILHV--IS---QDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKIL 326
              +  I+   +D    W  ++           + D + T++   +  +  L P   + +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKH---------VNCDKLTTII---ESSLNVLEPAEYRKM 374

Query: 327 RSSDLKPFVIFVAPP----PFELL 346
                    +F  PP    P  LL
Sbjct: 375 ----FDRLSVF--PPSAHIPTILL 392

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
             G  +++G V+  G ADR G LH GDE++ ++GI + GK+   V D++
Sbjct: 30 DEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           S  S G  +  IA FDY          +EL  SF+KG  L +  +   +WW+
Sbjct: 2   SSGSSGEPIEAIAKFDYVGRTA-----REL--SFKKGASLLLYQRASDDWWE 46

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
           S   G    A + ++P         EL   F++GDI+++    D NWW+   +G
Sbjct: 3   SGSSGKVFRALYTFEPRTP-----DEL--YFEEGDIIYITDMSDTNWWKGTSKG 49

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           G   +V A FD++  D+     ++L   F+KGDIL +  + +  WW A
Sbjct: 1   GSAEYVRALFDFNGNDE-----EDL--PFKKGDILRIRDKPEEQWWNA 41

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           G G+ V A +DYD +        EL  +F++GD + V  +D   WW+
Sbjct: 1   GPGIQVKALYDYDAQTG-----DEL--TFKEGDTIIVHQKDPAGWWE 40

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 7/46 (15%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
             +V A FD++  D+     ++L   F+KGDIL +  + +  WW A
Sbjct: 1   AEYVRALFDFNGNDE-----EDL--PFKKGDILRIRDKPEEQWWNA 39

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
            + +++ GG A++TG L EG ++LE NGI +  K+   V  I+
Sbjct: 51 AYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSII 94

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 1   GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
           G  +   G     + +V KG LAD  G L  GDE+LE NG  ++G +   V +I+
Sbjct: 56  GGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNII 110

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           +S  S      V   +D   ++D      EL  +F +G+++ V  ++D  WW  + EG+ 
Sbjct: 2   SSGSSGNKVRRVKTIYDCQADND-----DEL--TFIEGEVIIVTGEEDQEWWIGHIEGQP 54

Query: 293 DHT 295
           +  
Sbjct: 55  ERK 57

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           S   G + +A FDY          ++L  SF+ GD L V+      WW A
Sbjct: 3   SGSSGQYFVALFDYQARTA-----EDL--SFRAGDKLQVLDTSHEGWWLA 45

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          G  +++  + + V  V     A   GL   GD++L+ING    G S      +L    G+
Sbjct: 19 GLRLKSIDNGIFVQLVQANSPASLVGL-RFGDQVLQINGENCAGWSSDKAHKVLKQAFGE 77

Query: 61 EMTM 64
          ++TM
Sbjct: 78 KITM 81

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           +S  S  G +  +A F Y          +EL  SF++GD+L +  +   +WW+
Sbjct: 2   SSGSSGEGVVEAVACFAYTGRTA-----QEL--SFRRGDVLRLHERASSDWWR 47

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 54.7 bits (132), Expect = 5e-10
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           R           + G   V+A +DY  +       +E+  + +KGDIL +++  + +WW+
Sbjct: 2   RGSHHHHHHGSDETGKELVLALYDYQEKSP-----REV--TMKKGDILTLLNSTNKDWWK 54

Query: 286 AYREGEE 292
                 +
Sbjct: 55  VEVNDRQ 61

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 53.7 bits (130), Expect = 5e-10
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
             G     IA FDY          +EL  SF+KG  L +  +   +WW+
Sbjct: 2   PLGSPEFAIAKFDYVGRSA-----REL--SFKKGASLLLYHRASEDWWE 43

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 54.6 bits (132), Expect = 7e-10
 Identities = 15/42 (35%), Positives = 27/42 (64%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + +   + + RV+ GG+ADR G L  GD++L +NG+ + G+ 
Sbjct: 26 KEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           +S  S    +   A +D+    +     +EL  +F+ GD++ V+   + +WW    + EE
Sbjct: 2   SSGSSGDSIVSAEAVWDHVTMAN-----REL--AFKAGDVIKVLDASNKDWWWGQIDDEE 54

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 53.4 bits (129), Expect = 8e-10
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           S   G    A FD+  +       KEL    QKGDI+++  Q D NW++
Sbjct: 3   SGSSGRPARAKFDFKAQTL-----KEL--PLQKGDIVYIYKQIDQNWYE 44

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 55.3 bits (133), Expect = 8e-10
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 1   GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT-G 59
           G  +   G  + +  ++  G A   G+L  GD ++ +    + G ++     +L  +T G
Sbjct: 41  GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIG 100

Query: 60  QEMTM 64
             + +
Sbjct: 101 TVLQI 105

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 53.3 bits (129), Expect = 8e-10
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 7/46 (15%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           G  +V A FD+DP++D      EL   F++GD +HV+   DPNWW+
Sbjct: 1   GPTYVQALFDFDPQED-----GEL--GFRRGDFIHVMDNSDPNWWK 39

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 54.8 bits (132), Expect = 9e-10
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 6  NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          +    V+V  V +GG A+R G + +GDEI+ ING  +   ++      L
Sbjct: 40 SPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAAL 88

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 6  NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
           E   + V RV   GLA + G + +G+E+L ING  ++G + H    IL
Sbjct: 39 LENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 53.9 bits (130), Expect = 9e-10
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           S   G    A  D++  DD      EL   F+K DI+ +ISQ D + W     G  
Sbjct: 3   SGSSGRRAKALLDFERHDD-----DEL--GFRKNDIITIISQKDEHCWVGELNGLR 51

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           S          +     VIA +DY   D      +EL  + ++ +   ++   + +WW+ 
Sbjct: 5   SSGEDNRRPLWEPEETVVIALYDYQTNDP-----QEL--ALRRNEEYCLLDSSEIHWWRV 57

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
             G+ + +G +V  G AD  G L  GDE++ ++G  + GKS
Sbjct: 23 NEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKS 64

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           S   G    A +D++PE++      EL   F++GDI+ + +Q D NW++
Sbjct: 3   SGSSGPCCRALYDFEPENE-----GEL--GFKEGDIITLTNQIDENWYE 44

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           S  +      ++     V A +D++  +D      EL  +F+ G+I+ V+   D NWW+
Sbjct: 3   SGSSGSEIQLNNKVARKVRALYDFEAVED-----NEL--TFKHGEIIIVLDDSDANWWK 54

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 232 QTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
              H          A FD+           EL  +F+ GD++ ++S+ + +W     EG 
Sbjct: 9   HHHHMDRMAAPRAEALFDFTGNSK-----LEL--NFKAGDVIFLLSRINKDWL----EGT 57

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 8  GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G  + V  + + GLA + G LHEGD IL+ING      S+     ++
Sbjct: 20 GSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLI 66

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           +S  S    + V A F++   ++      EL  S  KGDI++V   ++  WW+
Sbjct: 2   SSGSSGSHQLIVKARFNFKQTNE-----DEL--SVCKGDIIYVTRVEEGGWWE 47

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 1  GATIR---NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          G +I      G  +++  +  G  ADR G LH GD IL +NG+ +R   
Sbjct: 24 GISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 7/48 (14%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
            G   V+A +DY  +       +E+  + +KGDIL +++  + +WW+ 
Sbjct: 3   TGKELVLALYDYQEKSP-----REV--TMKKGDILTLLNSTNKDWWKV 43

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          R     VI+  +++GG A+++GL+  GD IL +N   +   S     ++L
Sbjct: 29 RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL 78

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVIS-QDDPNWWQA 286
           S ++  G M  IA +D+    D      EL  SF++GDIL V++ + D NW++A
Sbjct: 2   SRRASVGSMEAIAKYDFKATAD-----DEL--SFKRGDILKVLNEECDQNWYKA 48

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
           S   G   IA F+++ +        E+  SF+KG+ + ++ Q D NW++    G
Sbjct: 3   SGSSGGEAIAKFNFNGDTQ-----VEM--SFRKGERITLLRQVDENWYEGRIPG 49

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           S      V+A +DY P +       +L    +KGD   ++ + +  WW+A
Sbjct: 4   STSELKKVVALYDYMPMNA-----NDL--QLRKGDEYFILEESNLPWWRA 46

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 11/55 (20%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           S   G    A  +Y  ++       +L   F KGD++ +  Q D NW+    +GE
Sbjct: 3   SGSSGPRAKALCNYRGKNP-----GDL--KFNKGDVILLRRQLDENWY----QGE 46

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          R     VI+  +++GG A+++GL+  GD IL +N   +   S
Sbjct: 22 RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 63

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 5   RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMT 63
            ++     V  + +GG+A R+  L  GD I  +NGI +       +  +L  +  +  + 
Sbjct: 29  IDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLE 88

Query: 64  MGREAWKTSHAFRHTEHTHFDV 85
           +  E    S           +V
Sbjct: 89  VEYELPPVSIQGSSVMFRTVEV 110

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 1   GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
           GA         V++  V  GG ADR G +  GD +L ++GI + G +
Sbjct: 126 GAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 172

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 11/60 (18%), Positives = 23/60 (38%)

Query: 1   GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
           G ++        +  +++G   +    L  GD I + NG  + G    +   +  G  G+
Sbjct: 128 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK 187

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 11/48 (22%), Positives = 16/48 (33%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIH 48
          G    +     ++  V   G       L   D I +ING  I   S+ 
Sbjct: 37 GGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMT 84

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           +      V A +D++  +D      EL  +F+ G+++ V+   D NWWQ
Sbjct: 1   AGHMARRVRALYDFEAVED-----NEL--TFKHGELITVLDDSDANWWQ 42

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
           G      A + ++P         EL   F++GDI+++    D NWW+   +G
Sbjct: 1   GQVKVFRALYTFEPRTP-----DEL--YFEEGDIIYITDMSDTNWWKGTSKG 45

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           +   G    +A +DY+   +      +L  SF KG+   +++  + +WW+A
Sbjct: 10  RGGTGVTLFVALYDYEAITE-----DDL--SFHKGEKFQILNSSEGDWWEA 53

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          +  G  +++  +  G  ADR G LH GD IL +NG+ +R   
Sbjct: 49 KEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 90

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           S    + V A F++   ++      EL  SF KGD++HV   ++  WW+
Sbjct: 2   SANSQLVVRAKFNFQQTNE-----DEL--SFSKGDVIHVTRVEEGGWWE 43

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           S   G+  IA +DY    D      E+  SF   DI+  I   D  WW+   +G  
Sbjct: 5   SSDLGITAIALYDYQAAGD-----DEI--SFDPDDIITNIEMIDDGWWRGVCKGRY 53

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 1  GATIR--NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
          G  I    +G+ + V  ++ GG AD +G L  GD IL +NG+ +R  +       L    
Sbjct: 29 GFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR-A 87

Query: 59 GQEMTM 64
          GQ +T+
Sbjct: 88 GQSVTI 93

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 6  NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
                 +  + +GG A   G L  G  ILE+NG+ +RGK 
Sbjct: 29 TRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE 69

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 1  GATIR--NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
          G  I    +G+ + +  ++ GG AD +G L +GD+IL +NG+++R  S       L    
Sbjct: 28 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-A 86

Query: 59 GQEMTM 64
          GQ +T+
Sbjct: 87 GQTVTI 92

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           S   G    A + +    D      EL  + +KGDI+ +  + +  WW 
Sbjct: 3   SGSSGRLCKALYSFQARQD-----DEL--NLEKGDIVIIHEKKEEGWWF 44

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           S   G      F Y P++D      EL    + GDI+ V+ + +  WW+
Sbjct: 3   SGSSGRRCQVAFSYLPQND-----DEL--ELKVGDIIEVVGEVEEGWWE 44

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           S   G   +A + + P+++      +L    + GDI+ ++   + +WW+
Sbjct: 3   SGSSGNTYVALYKFVPQENE-----DL--EMRPGDIITLLEDSNEDWWK 44

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 232 QTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
                 +     VIA +DY   D      +EL  + +  +  +++   + +WW+ 
Sbjct: 11  NRRSFQEPEETLVIALYDYQTNDP-----QEL--ALRCDEEYYLLDSSEIHWWRV 58

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
            G    +A +DY+          +L  SF KG+   ++     +WW+A
Sbjct: 4   SGVTLFVALYDYNATRW-----TDL--SFHKGEKFQILEFGPGDWWEA 44

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           S   G  V A +DY  +        EL  +F +G ++H +S++   WW+
Sbjct: 3   SGSSGRTVKALYDYKAKRS-----DEL--TFCRGALIHNVSKEPGGWWK 44

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           G   IA  D+  +        +L  +F+KG+IL VI +    WW A
Sbjct: 10  GEEYIAVGDFTAQQV-----GDL--TFKKGEILLVIEKKPDGWWIA 48

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 1   GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
             + R  GD +++  + KG +A RTG L  GD++L I+ I +   S+     IL
Sbjct: 127 SPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQIL 180

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 7  EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
               ++  +     A+R G+L  GD ++ INGI     +      +L
Sbjct: 34 LSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL 81

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
                  V A +D++  +D      EL  +F+ G+I+ V+   DPNWW+       
Sbjct: 13  HQHEARKVRAIYDFEAAED-----NEL--TFKAGEIITVLDDSDPNWWKGETHQGI 61

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
               +  G+  +A +DY    D      E+  SF   DI+  I   D  WW+   +G  
Sbjct: 10  DEYENDLGITAVALYDYQAAGD-----DEI--SFDPDDIITNIEMIDDGWWRGVCKGRY 61

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           G  V A F++   ++      EL  SF KGD++HV   ++  WW+
Sbjct: 4   GSVVRAKFNFQQTNE-----DEL--SFSKGDVIHVTRVEEGGWWE 41

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           S   G   +A   Y          +EL    QKG+ + V+ +    W + 
Sbjct: 3   SGSSGNMFVALHTYSAHRP-----EEL--DLQKGEGIRVLGKYQDGWLKG 45

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
            + G   V+  +DY  +       +EL  + +KGDIL +++  + +WW+    G +
Sbjct: 2   DETGKELVLVLYDYQEKSP-----REL--TVKKGDILTLLNSTNKDWWKIEVNGRQ 50

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAG 298
           V+A +DY  +       +E+  + +KGDIL +++  + +WW+   +   +     
Sbjct: 4   VLALYDYQEKSP-----REV--TMKKGDILTLLNSTNKDWWKVEVKITVNGKTYE 51

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
              V+A +DY           EL  +  +GDI+ V  +D+ +WW  
Sbjct: 6   APTVVALYDYTANRS-----DEL--TIHRGDIIRVFFKDNEDWWYG 44

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 1  GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G  I     + + V  +V GGLADR G L  GD IL+I G  ++G +   V  +L    G
Sbjct: 29 GFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CG 87

Query: 60 QEMTM 64
            + M
Sbjct: 88 NSVRM 92

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 51.5 bits (124), Expect = 6e-09
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 8  GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
             + V  + +  LA R G + EGD +L+ING      S+     ++
Sbjct: 20 ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 66

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           G   V+A +D+   +       +L    ++G    ++ ++D +WW+A
Sbjct: 1   GSEIVVAMYDFQATEA-----HDL--RLERGQEYIILEKNDLHWWRA 40

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 50.7 bits (122), Expect = 7e-09
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           G     A + YD +D       EL  SF   DI+ +I +D   WW 
Sbjct: 4   GSPQCKALYAYDAQDT-----DEL--SFNANDIIDIIKEDPSGWWT 42

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAG 298
            G   +  +D+    D     +EL  SF+ GD+ HV  +++  WW    +        G
Sbjct: 9   LGPKYVGLWDFKSRTD-----EEL--SFRAGDVFHVARKEEQWWWATLLDEAGGAVAQG 60

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 50.6 bits (122), Expect = 7e-09
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
           S   G      F + PE       +EL      G+I+ V+ + + NW      G
Sbjct: 3   SGSSGEAHRVLFGFVPETK-----EEL--QVMPGNIVFVLKKGNDNWATVMFNG 49

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 50.5 bits (121), Expect = 7e-09
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
            S  G   V+A +DY  +       +E+  + +KGDIL +++  + +WW+ 
Sbjct: 16  DSGTGKELVLALYDYQEKSP-----REV--TMKKGDILTLLNSTNKDWWKV 59

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          + +  ++ GG AD +G L +GD+IL +NG+++R  S       L    GQ +T+
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTI 89

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          +     V V  +VKGG+AD  G L +GD+IL +NG ++R  +   V  +L
Sbjct: 25 KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL 74

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 51.3 bits (123), Expect = 8e-09
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          I+  +++GG+A+R G+   G  I+EING  +       +  IL      E+ M
Sbjct: 34 IICSLMRGGIAERGGV-RVGHRIIEINGQSVVATPHEKIVHILSN-AVGEIHM 84

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 50.2 bits (121), Expect = 8e-09
 Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 7/42 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           V A FD++P++       EL  +F++GD++ +I++DDPNWW+
Sbjct: 5   VQALFDFNPQES-----GEL--AFKRGDVITLINKDDPNWWE 39

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 8  GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
             + V  + +  LA R G + EGD +L+ING      S+     ++
Sbjct: 22 ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 68

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 51.5 bits (124), Expect = 9e-09
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          RN+   V++  V  GG ADR G +  GD +L ++GI + G +
Sbjct: 28 RNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 69

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G   RNEG  V +  V+ GG   + G L  GD+++ IN   + G S      I+
Sbjct: 33 GGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAG 298
           V+A F Y  + +      +L  +F+K   + V S +D  W+    +      + G
Sbjct: 10  VVAQFPYKSDYE-----DDL--NFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEG 57

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 7/45 (15%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
            M   A FD+     +     EL  +F+ GD++ ++S+ + +W +
Sbjct: 4   HMRAEALFDFTGNSKL-----EL--NFKAGDVIFLLSRINKDWLE 41

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
             +   T+ + +         F Y P++D      EL    + GDI+ V+ + +  WW+ 
Sbjct: 4   GGQQMGTNKRGERRRRRCQVAFSYLPQND-----DEL--ELKVGDIIEVVGEVEEGWWEG 56

Query: 287 YREG 290
              G
Sbjct: 57  VLNG 60

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
                       A +D++PE+D      EL   F++GD++ + +Q D NW++
Sbjct: 6   EFMPPLDQPSCKALYDFEPEND-----GEL--GFREGDLITLTNQIDENWYE 50

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           G     A +DY  ++       EL      GDIL VI + +  WW   R G+ 
Sbjct: 7   GAQEYRALYDYTAQNP-----DEL--DLSAGDILEVILEGEDGWWTVERNGQR 52

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 6  NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
             +A+++  V + G A R G L  GD+ILE+NG+++R  S       L   T Q++ +
Sbjct: 40 TPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQ-TPQKVRL 97

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           +  I  FDY  + D      EL  +   G+I+  I ++D  WW+
Sbjct: 2   VEAIVEFDYQAQHD-----DEL--TISVGEIITNIRKEDGGWWE 38

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
                 ++  +     A+R G+L  GD ++ INGI     +      +L
Sbjct: 41 ETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL 90

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          R +   V +  +++GGLA + G L   D +L ING +++  +  +   I+
Sbjct: 25 RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQII 74

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 11/49 (22%), Positives = 25/49 (51%)

Query: 6  NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
           +  ++ + +++ GG A + G L   D IL +N +++R  +     + L
Sbjct: 32 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL 80

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 11  VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
           + V ++++GG A + G L  GD+IL +N + +           L
Sbjct: 132 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAAL 175

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 11/51 (21%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           G  V A F Y+         ++L   FQ+GDI+ V+S+ +  W     EGE
Sbjct: 5   GSQVEALFSYEATQP-----EDL--EFQEGDIILVLSKVNEEWL----EGE 44

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           G  +V A + +DP+ D      +L    + GD + ++ +  P W++
Sbjct: 1   GMEYVEALYQFDPQQD-----GDL--GLKPGDKVQLLEKLSPEWYK 39

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          +++ ++ KG  AD+T  L  GD IL +NG ++   +
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 67

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 11/36 (30%), Positives = 24/36 (66%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + + +V++   A +T  L  GD+ILE++G++++  S
Sbjct: 52 IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS 87

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          R     + V R+ + G A+R+G +  GDEILEING   +   
Sbjct: 45 REYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMK 86

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 244 VIAHFDYDPEDDMYIP-CKELGMSFQKGDILHVISQDDPNWW 284
            +A FDYDP      P   E  + F++G I+ V    D + +
Sbjct: 20  FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGF 61

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
                + + +V     A   G +  GDEI  +NG  I+GK+
Sbjct: 41 AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 82

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 6  NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          +   +VI +  +V  G+A+R+G L  GD ++ +N   +   S+    +IL
Sbjct: 40 DPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEIL 89

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 6  NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
              A+I+  V + G A + G L  GD+ILE+NGI++R  +     ++L   T Q + +
Sbjct: 27 TLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ-TPQRVRL 84

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           D      IA F+++ +        E+  SF+KG+ + ++ Q D NW++
Sbjct: 3   DPFTGEAIAKFNFNGDTQ-----VEM--SFRKGERITLLRQVDENWYE 43

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 10/36 (27%), Positives = 23/36 (63%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + + R+ KG  ++++  +  GDEIL++ G  ++G +
Sbjct: 59 LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLT 94

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 6  NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
            GD  + V  ++K G A R G L  GD +L ING   +G +
Sbjct: 34 VAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLT 75

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
           S   G  ++A +DYDP +       E  ++F  GDI+ V  + D + +
Sbjct: 3   SGSSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGF 50

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           S   G+ +   ++++  +      +EL  +  +G+ L V+      W      G  
Sbjct: 3   SGSSGLKMQVLYEFEARNP-----REL--TVVQGEKLEVLDHSKRWWLVKNEAGRS 51

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G TI+ +   + V  V  G  A+ + L    DEI+ IN  +          + +
Sbjct: 20 GFTIKWDIPGIFVASVEAGSPAEFSQL-QVDDEIIAINNTKFSYNDSKEWEEAM 72

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 232 QTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQA-YRE 289
                S   G   IA +++    +     ++L   F KGD+L +++   DPNW++A  + 
Sbjct: 2   SAIQASWPSGTECIAKYNFHGTAE-----QDL--PFCKGDVLTIVAVTKDPNWYKAKNKV 54

Query: 290 GEE 292
           G E
Sbjct: 55  GRE 57

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
            S   G  +IA  DYDP D       +  ++ + GD++ V    D   +
Sbjct: 2   SSGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGF 50

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           S   G +V   +D+   +       EL  S  K ++L V+      W    R G+ 
Sbjct: 3   SGSSGKYVKILYDFTARNA-----NEL--SVLKDEVLEVLEDGRQWWKLRSRSGQA 51

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 7/42 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           VIA +DY   ++      EL  SF KG +++V+++DDP+WWQ
Sbjct: 37  VIAMYDYAANNE-----DEL--SFSKGQLINVMNKDDPDWWQ 71

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          +  +   G+A +T  L  GD I+ I G    G +
Sbjct: 57 IAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMT 90

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 7/56 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
              G    +    Y    D      E+  SF  G  + V+ + +  WW       E
Sbjct: 4   GSSGATSYMTCSAYQKVQD-----SEI--SFPAGVEVQVLEKQESGWWYVRFGELE 52

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
            G    +    Y  +        E+   F+KG  + VI ++   WW     G+E
Sbjct: 6   SGEEKYVTVQPYTSQSK-----DEI--GFEKGVTVEVIRKNLEGWWYIRYLGKE 52

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
                      F+Y P+++      EL    + GDI+ +  + +  WW      
Sbjct: 3   LGSKKRQCKVLFEYIPQNE-----DEL--ELKVGDIIDINEEVEEGWWSGTLNN 49

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
             A +D++  ++      EL   F+ G+++ V+   +P+WW      + 
Sbjct: 4   ARALYDFEALEE-----DEL--GFRSGEVVEVLDSSNPSWWTGRLHNKL 45

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
              + + +  +V  G A   G +  GD I+ +N   + G +   V  I 
Sbjct: 21 DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 70

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 1  GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          G+T    GDA I V R+ +GG A R G L  GD +L ING+++    
Sbjct: 29 GSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR 75

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           V A FDY  + +      EL  +F K  I+  + + D  WW+
Sbjct: 6   VKALFDYKAQRE-----DEL--TFTKSAIIQNVEKQDGGWWR 40

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
                + + +V     A   G +  GDEI  +NG  I+GK+
Sbjct: 46 AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 87

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           S   G    A + Y P+++      EL    ++GD + V+ Q D  W+ 
Sbjct: 3   SGSSGTPYRAMYQYRPQNE-----DEL--ELREGDRVDVMQQCDDGWFV 44

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           S  +     +     M     F+Y  E +      EL  S  KG  + V+ +    WW+ 
Sbjct: 3   SGSSGDPGERLYDLNMPAYVKFNYMAERE-----DEL--SLIKGTKVIVMEKCSDGWWRG 55

Query: 287 YREGEE 292
              G+ 
Sbjct: 56  SYNGQV 61

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
             GG    +A +DY+         ++L  SF+KG+   +I+  + +WW+A
Sbjct: 23  LTGGVTIFVALYDYEARTT-----EDL--SFKKGERFQIINNTEGDWWEA 65

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 7/43 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
             A +DY+   +      +L  SF KG+   +++  + +WW+A
Sbjct: 8   FEALYDYEARTE-----DDL--SFHKGEKFQILNSSEGDWWEA 43

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 7/43 (16%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
                +D++PE+       EL   F++GDI+ + +Q D NW++
Sbjct: 5   CCRGLYDFEPENQ-----GEL--GFKEGDIITLTNQIDENWYE 40

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQ 285
           S  + +   +    G   I   ++           EL  +F+KGD++ ++   ++ +W++
Sbjct: 3   SGSSGRMPTRRWAPGTQCITKCEHTRPKP-----GEL--AFRKGDVVTILEACENKSWYR 55

Query: 286 AYRE--GEE 292
                 G+E
Sbjct: 56  VKHHTSGQE 64

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + V  V+ G  A   G +   D+I+ ++G+ I+G +
Sbjct: 48 IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFA 83

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 1  GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
           A    +    I V  VVKGG AD  G L  GD++L ++G  + G S     +++   T 
Sbjct: 29 AAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TS 87

Query: 60 QEMTM 64
            +T+
Sbjct: 88 SVVTL 92

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + +  V++   A + G L  GD I+E++G+++R  S
Sbjct: 41 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 76

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 48.0 bits (115), Expect = 6e-08
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 7/42 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
             A +DYD  +D      EL  +F + D +  I   D +WW 
Sbjct: 3   ATAEYDYDAAEDN-----EL--TFVENDKIINIEFVDDDWWL 37

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 9/45 (20%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ--DDPNWWQA 286
           V   + +    +     +EL  +F+KG+ + VI +  +DP WW+ 
Sbjct: 9   VQTLYPFSSVTE-----EEL--NFEKGETMEVIEKPENDPEWWKC 46

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 7/42 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           V+A +DY  + +      EL  SFQ+G I++VI ++D  W++
Sbjct: 20  VVAIYDYTKDKE-----DEL--SFQEGAIIYVIKKNDDGWYE 54

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ--DDPNW 283
            S  +  ++ +       V   + +    +     +EL  +F+KG+ + VI +  +DP W
Sbjct: 2   SSGSSGLSNGQGSRVLHVVQTLYPFSSVTE-----EEL--NFEKGETMEVIEKPENDPEW 54

Query: 284 WQA 286
           W+ 
Sbjct: 55  WKC 57

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
            +GR++ G  ADR   L  GD IL +NG  I    
Sbjct: 45 HKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMP 80

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 52.1 bits (124), Expect = 6e-08
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 5   RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
           R     +++ ++ KG  AD+T  L  GD IL +NG ++   + H      +  TG+E+ +
Sbjct: 99  RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT-HDEAVQALKKTGKEVVL 157

Query: 65  GREAWKTSHAFRHTEHTHFDVD 86
             +  K    +         V 
Sbjct: 158 EVKYMKEVSPYFKNSAGGTSVG 179

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
               V A FDY  + +      EL  +F K  I+  + + +  WW+
Sbjct: 5   FKCAVKALFDYKAQRE-----DEL--TFIKSAIIQNVEKQEGGWWR 43

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
           S     +  A  DY+  D        L   F++ DI+ +  +D  N W
Sbjct: 6   SPEFAKYARALKDYNVSDT-----SLL--PFKRNDIITITFKDQENKW 46

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 1  GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          G     E D  I V  V  GG+  R G +  GD +L ++G+E+   S
Sbjct: 44 GGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVS 90

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           +S  S    +   A   +  + D       L  +F K DI+ V+ Q + NWW 
Sbjct: 2   SSGSSGVENLKAQALCSWTAKKD-----NHL--NFSKHDIITVLEQQE-NWWF 46

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 48.6 bits (116), Expect = 7e-08
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
            S  + +            +A + +  + +      EL  SF+KG+ + +I + + NW++
Sbjct: 2   SSGSSGKPPTYQVLEYGEAVAQYTFKGDLE-----VEL--SFRKGEHICLIRKVNENWYE 54

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          R     + V R+ + G A R G +  GD+I+EING   R  +
Sbjct: 32 REYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT 73

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 47.6 bits (114), Expect = 7e-08
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 7/46 (15%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           G   +A +D++PE+D      EL     +GDI+ +  +    W  A
Sbjct: 1   GQRAVALYDFEPENDN-----EL--RLAEGDIVFISYKHGQGWLVA 39

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           G    +   +Y  +++      EL  S Q G+++ VI +++  WW      E+
Sbjct: 7   GLEQYVVVSNYKKQEN-----SEL--SLQAGEVVDVIEKNESGWWFVSTSEEQ 52

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 48.0 bits (115), Expect = 8e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
               FD+  +       KEL  + QKGDI+++  + D NW +
Sbjct: 4   ARLKFDFQAQSP-----KEL--TLQKGDIVYIHKEVDKNWLE 38

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 48.2 bits (115), Expect = 8e-08
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 8/51 (15%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           M       Y           E+  + +KGDIL +++  + +WW+      +
Sbjct: 1   MGAPPLPPYSAGGR------EV--TMKKGDILTLLNSTNKDWWKVEVNDRQ 43

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + +  V++   A + G L  GD I+E++G+++R  S
Sbjct: 61 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 96

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 6  NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          N     I +  +V    A   G L  GD IL +NG ++R  +
Sbjct: 33 NTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNST 74

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG 44
              + + V ++  GG A  +  +  GDE++ ING  + G
Sbjct: 31 LEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG 70

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
            G ++ I  +D+  E        EL  +   G+ L + +  +  W+ A   G
Sbjct: 3   LGSLYAIVLYDFKAEKA-----DEL--TTYVGENLFICAHHNCEWFIAKPIG 47

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          + V  + K    +  G +  GD+I+ ++G  ++G +     ++L   TGQ + +
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLL 87

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 232 QTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
            +S     G + V A  D+    D       L  + + GD++ V+ Q     W+ +    
Sbjct: 9   HSSGLVPRGSLKVRALKDFWNLHDP----TAL--NVRAGDVITVLEQHPDGRWKGHIHES 62

Query: 292 ED 293
           + 
Sbjct: 63  QR 64

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 10  AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
           ++ V  +   G A   G +  GDE+LEIN   + G+S      I+      ++ +
Sbjct: 52  SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKT-APSKVKL 105

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 7/47 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
               F+Y P+++      EL    + GDI+ +  + +  WW      
Sbjct: 4   CKVLFEYIPQNE-----DEL--ELKVGDIIDINEEVEEGWWSGTLNN 43

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 8/59 (13%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQAYREG 290
           +S  S        A +    E D      EL  SF  G +   +    +P W +    G
Sbjct: 2   SSGSSGTPFRKAKALYACKAEHD-----SEL--SFTAGTVFDNVHPSQEPGWLEGTLNG 53

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + V R+ + G A   G L EGD+IL +NG +++   
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL 74

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 6  NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
            GD  I +G ++KGG     G +  GD +L++N +     S
Sbjct: 29 ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMS 70

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
            T   +   + +  +    +A + G + EGD I++INGIE++ + 
Sbjct: 40 YRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE 85

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 3  TIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
               GD  I + ++++GG A + G L  GD +L +N   ++   
Sbjct: 26 NQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVR 70

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + V  ++  G A + G L  GD ++E+NG+++ GKS
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKS 76

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 1  GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G +I +     + V +V  G +A + GL   GD++LE NGI +R  +      I+     
Sbjct: 33 GISIVSGEKGGIYVSKVTVGSIAHQAGL-EYGDQLLEFNGINLRSATEQQARLIIGQ-QC 90

Query: 60 QEMTM 64
            +T+
Sbjct: 91 DTITI 95

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 7/62 (11%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTL 296
           S   G        Y          ++L  S   G ++ ++ ++   WWQ   +       
Sbjct: 3   SGSSGEIAQVTSAYVASGS-----EQL--SLAPGQLILILKKNTSGWWQGELQARGKKRQ 55

Query: 297 AG 298
            G
Sbjct: 56  KG 57

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
              + + V  V+  G A + G +  GD I+ IN + + G +   V  + 
Sbjct: 40 DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLF 89

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 9/68 (13%)

Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWW 284
           S  +     K           +DYD  +       EL  S    +++ V S    D +W 
Sbjct: 3   SGSSGLNDLKESSNNRKARVLYDYDAANS-----TEL--SLLADEVITVFSVVGMDSDWL 55

Query: 285 QAYREGEE 292
              R  ++
Sbjct: 56  MGERGNQK 63

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 7  EGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
           GD  I V +++ GG A + G L  GD +L +N   +   +
Sbjct: 51 PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVT 91

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQAYREGEE 292
            +A +D+    D       L  S  KG+ L V+  + +  W +A  +  +
Sbjct: 8   FVALYDFVASGD-----NTL--SITKGEKLRVLGYNHNGEWCEAQTKNGQ 50

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 7/51 (13%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
             +  +  +++  E D      EL      G+ L + +  D  W+ A    
Sbjct: 2   APLFAVTLYEFKAERD-----DEL--DVSPGENLSICAHYDYEWFIAKPIN 45

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 5  RNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
           +E D  + +  +V  G A   G +  GD I+ +N   + G +   V  I 
Sbjct: 38 GDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 88

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + + +++ GG A   G L   D +L +N +++    
Sbjct: 36 IFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVV 71

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 5  RNEGDAVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKS 46
           ++   VIV RV  G  AD     L+EGD+++ ING +I   +
Sbjct: 37 YDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 79

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 5  RNEGDAVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKS 46
           ++   VIV RV  G  AD     L+EGD+++ ING +I   +
Sbjct: 39 YDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 81

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + +V   G A R G L  G  +LE+N   + G +
Sbjct: 48 ISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLT 81

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + V R+ + G A   G L EGD+IL +NG +++   
Sbjct: 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL 84

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 3  TIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
               GD  I V ++++GG A + G L  GD++L +N + +   +
Sbjct: 26 NQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVT 70

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
             +A +D++PE+D      EL     +GDI+ +  +    W  A
Sbjct: 7   RAVALYDFEPEND-----NEL--RLAEGDIVFISYKHGQGWLVA 43

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 6  NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
            GD  I V  V   G A   G L  GD+I+ +NG  + G +
Sbjct: 49 PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVT 90

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          + V  V+  G A+  G +H+GD +L +NG+ + G +     + L   TGQ + +
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHL 87

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 13/57 (22%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ--DDPNWWQAYREGE 291
           S   G   +A +++   D      +EL  S ++GD++ + S+   D  WW    +GE
Sbjct: 3   SGSSGGTAVARYNFAARDM-----REL--SLREGDVVRIYSRIGGDQGWW----KGE 48

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 9/51 (17%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQ 285
           S   G +    F Y+ ++D      EL  + ++GDI+ +I++D  D  WW+
Sbjct: 3   SGSSGDYCKVIFPYEAQND-----DEL--TIKEGDIVTLINKDCIDVGWWE 46

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 234 SHKSDGGGMH-VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           S  S G      ++  DY+ +++           FQ+G  + V+ ++   WW        
Sbjct: 2   SSGSSGNLKDVYVSIADYEGDEE------TA--GFQEGVSMEVLERNPNGWWYCQILDGV 53

Query: 293 D 293
            
Sbjct: 54  K 54

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + V ++V  G A + G L   D I+E+NG ++   +
Sbjct: 43 IFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRAT 78

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVIS-QDDPNWWQA 286
           G    I  +D+  E        EL  + + GD ++++  +   +WW  
Sbjct: 1   GMERGIVQYDFMAESQ-----DEL--TIKSGDKVYILDDKKSKDWWMC 41

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 12/64 (18%)

Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-----DP 281
           ++     S  +   G    A FDY+   D     +EL  + ++GD + V+SQD     D 
Sbjct: 15  TENLYFQSMGTTPAGPVWTAVFDYEAAGD-----EEL--TLRRGDRVQVLSQDCAVSGDE 67

Query: 282 NWWQ 285
            WW 
Sbjct: 68  GWWT 71

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          + V  V+  G A+  G +H+GD +L +NG+ + G +     + L   TGQ + +
Sbjct: 44 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHL 96

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 9/49 (18%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP--NWWQ 285
           G     +A + +  E+       +L   F+KGD++ ++ + D   +WW 
Sbjct: 1   GSSPKAVALYSFAGEESG-----DL--PFRKGDVITILKKSDSQNDWWT 42

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7   EGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
            G A I V  ++  G A + G L  GD ++E+NG+++ GKS   V  +L
Sbjct: 55  GGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 8/52 (15%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQAYREGEE 292
           M  IA +D+    D      EL  SF++GDIL V++++ D NW++A   G++
Sbjct: 1   MEAIAKYDFKATAD-----DEL--SFKRGDILKVLNEECDQNWYKAELNGKD 45

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 7/51 (13%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
            +V A FD+DP++D      EL   F++GD +HV+   DPNWW+    G+ 
Sbjct: 159 TYVQALFDFDPQED-----GEL--GFRRGDFIHVMDNSDPNWWKGACHGQT 202

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 1  GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          G T+   G A  ++  V++G  AD  GL   GD+IL +N I ++  S
Sbjct: 16 GFTLS--GQAPCVLSCVMRGSPADFVGL-RAGDQILAVNEINVKKAS 59

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
             G+ V A +DYD ++       EL  SF+ GD L  + ++D   W
Sbjct: 1   AKGVRVRALYDYDGQEQ-----DEL--SFKAGDELTKLGEEDEQGW 39

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           +        A +DY  +D+      E+  SF+ GD +  +   D  W  
Sbjct: 2   AMANLRTYRAMYDYSAQDE-----DEV--SFRDGDYIVNVQPIDDGWMY 43

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 10/52 (19%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ---DDPNWWQ 285
           S   G+   A +D  P+        EL  +F +GDIL ++ Q   +   WW+
Sbjct: 3   SGSSGLLARALYDNCPDCS-----DEL--AFSRGDILTILEQHVPESEGWWK 47

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          +  ++ GG A + G L   D+++ +NG  + GKS
Sbjct: 59 IKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKS 92

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          GA    E   + V  V +GG A R G +   D+I+E++GI + G +
Sbjct: 32 GADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT 77

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 11/64 (17%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD----PNWWQAYR 288
           +S     G     A + +   +       EL  S      L ++   D      WW A  
Sbjct: 5   SSGSEAEGNQVYFAVYTFKARNP-----NEL--SVSANQKLKILEFKDVTGNTEWWLAEV 57

Query: 289 EGEE 292
            G++
Sbjct: 58  NGKK 61

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
           +  +VK   A R GLL     I EING  + G     + DIL   +G  +T+
Sbjct: 26 KITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILST-SGTVVTI 76

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + +  ++ G  A   G L  GD ILE+NG  + G  
Sbjct: 38 LYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLG 73

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
             G  + V +V +G  A+R GL   GD+I E+NG+ +   ++     +L
Sbjct: 32 SEHGLGIFVSKVEEGSSAERAGL-CVGDKITEVNGLSLESTTMGSAVKVL 80

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 8/51 (15%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVIS-QDDPNWWQA 286
           +       I  +D+  E        EL  + + GD ++++  +   +WW  
Sbjct: 2   ASKSKKRGIVQYDFMAESQ-----DEL--TIKSGDKVYILDDKKSKDWWMC 45

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD-PNWWQAYRE-GEE 292
           S   G H +A + ++   +       +  S  +G+ L ++ +D    W +  R+ G E
Sbjct: 3   SGSSGGHCVAIYHFEGSSEG-----TI--SMAEGEDLSLMEEDKGDGWTRVRRKEGGE 53

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP--NW 283
            S  +      +    + V A + ++ +        +L  +FQ GD + VIS+ D   +W
Sbjct: 2   SSGSSGHERVGNLNQPIEVTALYSFEGQQP-----GDL--NFQAGDRITVISKTDSHFDW 54

Query: 284 WQ 285
           W+
Sbjct: 55  WE 56

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 47.9 bits (113), Expect = 7e-07
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 219 FSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ 278
            + F +         +         V+  F +  E +      +L   F++G+ L ++S+
Sbjct: 96  LNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERET-----DL--PFEQGERLEILSK 148

Query: 279 DDPNWWQA-YREGEE 292
            + +WW+A    G  
Sbjct: 149 TNQDWWEARNALGTT 163

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 11/48 (22%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
            I        D        L  + + GDI+ V   +    W    EGE
Sbjct: 21  AIQKRVPCAYDK-----TAL--ALEVGDIVKVTRMNINGQW----EGE 57

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQAYREGE 291
           +  I  +DYD   D      EL  + + G+I+  + +  +  W +    G 
Sbjct: 2   VDYIVEYDYDAVHDD-----EL--TIRVGEIIRNVKKLQEEGWLEGELNGR 45

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 9/48 (18%)

Query: 240 GGMHVIAHFDYDPE--DDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           G ++        P   D        L  + + G+++ V   +    W+
Sbjct: 5   GPIYARVIQKRVPNAYDK-----TAL--ALEVGELVKVTKINVSGQWE 45

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 6  NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
           E   + V  ++ G  A   G +   D+IL ++ + ++G +
Sbjct: 41 GEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMA 81

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
              ++    + V+A +DY+          +L  SFQKGD + V+ +    WW+A
Sbjct: 17  GIREAGSEDIIVVALYDYEAIHHE-----DL--SFQKGDQMVVLEESG-EWWKA 62

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
             G  + V  V  G LA++ GL   GD+IL +N   +   +
Sbjct: 31 SEHGVGIYVSLVEPGSLAEKEGL-RVGDQILRVNDKSLARVT 71

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 1  GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G T+R  G+  V V  +     A   G   EGD I+ I G++ +  ++  V  +L    G
Sbjct: 29 GFTLR--GNTPVQVHFLDPHCSASLAGA-KEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG 85

Query: 60 QEMTM 64
          +E+ M
Sbjct: 86 EEVEM 90

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          GA +  E   + V  V +GG A R G +   D ++E++G  + G +      +L
Sbjct: 27 GADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL 80

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 9/48 (18%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQ 285
              +    F Y+ ++D      EL  + ++GDI+ +I++D  D  WW+
Sbjct: 1   ASDYCKVIFPYEAQND-----DEL--TIKEGDIVTLINKDCIDVGWWE 41

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 228 DRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
                 +         V+  F +  E +      +L   F++G+ L ++S+ + +WW+A
Sbjct: 134 TEASLLAAYKKPIIEVVVGTFKFTGERET-----DL--PFEQGERLEILSKTNQDWWEA 185

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 1  GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          G TI    D+ V V  V  GG A+R GL  + D +L++N   +    
Sbjct: 29 GFTIC--CDSPVRVQAVDSGGPAERAGL-QQLDTVLQLNERPVEHWK 72

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-NWWQA 286
           +S       +     + Y           EL  + ++ ++L VI   D  +W +A
Sbjct: 5   SSGTLRNYPLTCKVVYSYKASQP-----DEL--TIEEHEVLEVIEDGDMEDWVKA 52

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 8/56 (14%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
              GG   IA + Y   +       +L  +F +G+ + V  +D   WW        
Sbjct: 4   GSSGGEEYIALYPYSSVEP-----GDL--TFTEGEEILVTQKDG-EWWTGSIGDRS 51

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
             G  + +  V  G  A+ +GL   GD+ILE+NG       
Sbjct: 42 AEYGLGIYITGVDPGSEAEGSGL-KVGDQILEVNGRSFLNIL 82

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 9/51 (17%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQ 285
           + G   +    F Y   ++      EL  +F++G+I+H+IS++  +  WW+
Sbjct: 2   AMGAKEYCRTLFPYTGTNED-----EL--TFREGEIIHLISKETGEAGWWK 45

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
             G    V+ ++D+   +       EL  S ++ D+L V+      WW+ 
Sbjct: 4   GSGALKWVLCNYDFQARNS-----SEL--SVKQRDVLEVLDDSR-KWWKV 45

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 12/56 (21%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQAY-REGEE 292
              A +D+ PE+       E+ ++ +KGD++ ++S+ DP     +WW+   + G  
Sbjct: 16  FARALYDFVPENP------EMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNI 65

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 1   GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
                   D + V +V +GG A   GL   GD I+++NG  + GK+   V  ++
Sbjct: 53  QRNRLEPMDTIFVKQVKEGGPAFEAGL-CTGDRIIKVNGESVIGKTYSQVIALI 105

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 12/58 (20%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQAY-REGEE 292
                A +D+ PE+       E+ ++ +KGD++ ++S+ DP     +WW+   + G  
Sbjct: 7   HHFARALYDFVPENP------EMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNI 58

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 1  GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          G T+   GD  V+V  V  GG A + G+  EGD I+++NG  +   S
Sbjct: 22 GFTVS--GDRIVLVQSVRPGGAAMKAGV-KEGDRIIKVNGTMVTNSS 65

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 12/56 (21%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQAY-REGEE 292
              A +D+ PE+       E+ ++ +KGD++ ++S+ DP     +WW+   + G  
Sbjct: 16  FARALYDFVPENP------EMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNI 65

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 7/51 (13%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           +     F Y  E +      EL  S   G  + V+      WW+    G+ 
Sbjct: 2   IPAFVXFAYVAERE-----DEL--SLVXGSRVTVMEXCSDGWWRGSYNGQI 45

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 9/48 (18%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQ 285
           G  +VIA   Y  ++        L  SF +GD++ ++     +P W  
Sbjct: 7   GSGYVIALRSYITDNC-----SLL--SFHRGDLIKLLPVATLEPGWQF 47

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
           + A + Y+ + D      E+  S   GDI+ VI  DD + W
Sbjct: 3   MEAIYAYEAQGD-----DEI--SIDPGDIITVIRGDDGSGW 36

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           +    + V+A FDY  + +     +EL    +K + L ++     +WW+ 
Sbjct: 3   TMAEEVVVVAKFDYVAQQE-----QEL--DIKKNERLWLLDDSK-SWWRV 44

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + + R+  GG A + G+   GD +L I+G      +
Sbjct: 29 LSISRLTPGGKAAQAGV-AVGDWVLSIDGENAGSLT 63

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 227 SDRTKQTSHKSDGGGMH-VIAHFDYDPEDDMYI-PCKELGMSFQKGDILHVISQDDPNWW 284
           S  +  TS +   G +H  +A + Y+P D     P  EL      G  L+V    D + +
Sbjct: 2   SSGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAEL--PLTAGKYLYVYGDMDEDGF 59

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 5   RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG 44
              G  + +  ++KGG AD  GL   GDEI+ ING  I  
Sbjct: 106 LEFGCGLFISHLIKGGQADSVGL-QVGDEIVRINGYSISS 144

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 9/55 (16%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQ 285
           +         +    F Y+ ++D      EL  + ++GDI+ +I++D  D  WW+
Sbjct: 1   SMDSRTKSKDYCKVIFPYEAQND-----DEL--TIKEGDIVTLINKDCIDVGWWE 48

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
            +  V KGG AD  GL  + D I+E+NG+ +  +    V D +   +G+ +T+
Sbjct: 29 SFIKEVQKGGPADLAGL-EDEDVIIEVNGVNVLDEPYEKVVDRIQS-SGKNVTL 80

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN---WWQAYREGEE 292
            +   A +D   E        EL  SF+KGDI+ V+ QD      WW     G +
Sbjct: 3   NVLAKALYDNVAESP-----DEL--SFRKGDIMTVLEQDTQGLDGWWLCSLHGRQ 50

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + + R+  G  A ++ L  +GD ++ I+G+     +
Sbjct: 27 LTISRITPGSKAAQSQL-SQGDLVVAIDGVNTDTMT 61

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + +  +  GG A +  +   GD +L I+GI  +G +
Sbjct: 31 LTISSLKDGGKASQAHV-RIGDVVLSIDGISAQGMT 65

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 10/49 (20%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVIS---QDDPNWWQ 285
           G   V A +DY+ + D      EL  SF +G I+ +++   QDD  +W+
Sbjct: 7   GVCFVKALYDYEGQTD-----DEL--SFPEGAIIRILNKENQDDDGFWE 48

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 6  NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIH 48
          N G+  I V  + +G +A R G L E D+IL ING  +     H
Sbjct: 45 NRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITH 88

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          +IV +V + G A+   L   GD I+ ING       
Sbjct: 32 IIVTKVTERGKAEAADL-RPGDIIVAINGQSAENML 66

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          V V  +   G  D  GL    D +L++N +  R     +V  ++
Sbjct: 34 VYVKNIRPAGPGDLGGL-KPYDRLLQVNHVRTRDFDCCLVVPLI 76

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 48.0 bits (113), Expect = 3e-06
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 11  VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
           VI+  ++ GG A R+G L  GD+I+ ING  + G  +     I+
Sbjct: 234 VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII 277

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 12  IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
           I+  +++GG+A+R G+   G  I+EING  +   +   +   L   +  E+ M
Sbjct: 318 IICSLMRGGIAERGGV-RVGHRIIEINGQSVVATAHEKIVQALSN-SVGEIHM 368

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + + RV  G  A    L   GD I  ING      +
Sbjct: 34 LTISRVHAGSKAALAAL-CPGDLIQAINGESTELMT 68

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G  I      + V  V  GG A   G L  GD+IL++N       S     DIL
Sbjct: 24 GFHISESLP-LTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDIL 74

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 235 HKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD----PNWWQAYREG 290
              +   +   A +D+    D     +E+  SF+ GD+L++  ++       W  A  +G
Sbjct: 11  ASGEDDHVVARAEYDFVAVSD-----EEI--SFRAGDMLNLALKEQQPKVRGWLLASLDG 63

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + + +V+    A R GL  EGD++L +N ++ +   
Sbjct: 43 IFISKVIPDSDAHRAGL-QEGDQVLAVNDVDFQDIE 77

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
           V   F   P D        L    +KGDI+ +IS+     W 
Sbjct: 14  VHTDFTPSPYDT-----DSL--KLKKGDIIDIISKPPMGTWM 48

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + + + + + RV + G A R G+   GD++LE+NG+ ++G  
Sbjct: 42 KGDDEGIFISRVSEEGPAARAGV-RVGDKLLEVNGVALQGAE 82

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          V +  +   G+A R G+    D ++E+NG  +   S   V + +   +G  +  
Sbjct: 34 VYMTDITPQGVAMRAGV-LADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMF 85

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 1  GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          G TI    D+ V V  V  GG A+R GL  + D +L++N   +    
Sbjct: 17 GFTIC--CDSPVRVQAVDSGGPAERAGL-QQLDTVLQLNERPVEHWK 60

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          +++ R+  G  A    L   GD IL I+G      +
Sbjct: 31 LVITRITPGSKAAAANL-CPGDVILAIDGFGTESMT 65

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 6/43 (13%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
             A +D+              +  +KGD++++  ++   W   
Sbjct: 3   FEAAYDFPGSGS------PSELPLKKGDVIYITREEPSGWSLG 39

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGI 40
          V  V  G +ADR   L E D+IL IN  
Sbjct: 58 VKDVQPGSVADRDQRLKENDQILAINHT 85

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
             A +D+              +  +KGDI+ +   +   W  A
Sbjct: 5   FEAAYDFPGSGS------SSELPLKKGDIVFISRDEPSGWSLA 41

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
            S   G  V A   Y    D      E+  SF KGD+  V ++ +  W 
Sbjct: 2   SSGSSGRRVRAILPYTKVPDT----DEI--SFLKGDMFIVHNELEDGWM 44

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 1  GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G T+R  G+A V V  +     A   G   EGD I+ I  ++ +  ++  V  +L     
Sbjct: 37 GFTLR--GNAPVQVHFLDPYCSASVAGA-REGDYIVSIQLVDCKWLTLSEVMKLLKSFGE 93

Query: 60 QEMTM 64
           E+ M
Sbjct: 94 DEIEM 98

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 11  VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL----VGLT---GQEMT 63
           + V  V + GLA + GL   GDEILEIN       +  ++ D L    +GL      E+ 
Sbjct: 46  LYVNSVKETGLASKKGL-KAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELE 104

Query: 64  MGREAWKTS 72
            G E+  +S
Sbjct: 105 EGVESGPSS 113

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQAYREGEE 292
            G     A + ++  +       E+  SF  GDI+ V  +   +P W     +G  
Sbjct: 3   SGSSGYRALYPFEARNH-----DEM--SFNSGDIIQVDEKTVGEPGWLYGSFQGNF 51

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          ++V +V + G A    L   GD I+ ING    G  
Sbjct: 28 IMVTKVAERGKAKDADL-RPGDIIVAINGESAEGML 62

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + +  +  GG A +  +   GD +L I+GI  +G +
Sbjct: 29 LTISSLKDGGKAAQANV-RIGDVVLSIDGINAQGMT 63

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 13/50 (26%)

Query: 244 VIAHFDYDPE--DDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
             A     P   D        L  + + GDI+ V   +    W    EGE
Sbjct: 4   AKAIQKRVPCAYDK-----TAL--ALEVGDIVKVTRMNINGQW----EGE 42

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
            +   + +  V  G L+   GL   GD+I+E+NG++          ++L       +++
Sbjct: 37 PIQKPGIFISHVKPGSLSAEVGL-EIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISI 95

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 8/44 (18%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           +  + +D+   +       EL  S  K D+L ++      WW+ 
Sbjct: 3   YAKSKYDFVARNS-----SEL--SVMKDDVLEILDDRR-QWWKV 38

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 228 DRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
              +    + +  G   +A   Y   +       E+  S  +G+ + VI +    WW   
Sbjct: 68  SPDETEDPEPNYAGEPYVAIKAYTAVEG-----DEV--SLLEGEAVEVIHKLLDGWWVIR 120

Query: 288 REGEE 292
           ++   
Sbjct: 121 KDDVT 125

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 45.0 bits (106), Expect = 9e-06
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
             A  DY+          E+  +   GD++ V+ + +  WW    + + 
Sbjct: 14  YRAIADYEKTSG-----SEM--ALSTGDVVEVVEKSESGWWFCQMKAKR 55

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          +++  V+ GG AD  GLL E D ++ +NG  +    
Sbjct: 48 IVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVL 81

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 1   GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-T 58
           G  +    D  I V  V++   A + GL  EGD+IL +N ++            L+ L  
Sbjct: 42  GLRLAGGNDVGIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTNIIREEAVLFLLDLPK 100

Query: 59  GQEMTM 64
           G+E+T+
Sbjct: 101 GEEVTI 106

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 45.5 bits (107), Expect = 6e-06
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 1  GATIRNEGDA--VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
          G  + ++       +  V     A+ +GL    D I+E+NG+ + GK    V   +    
Sbjct: 23 GFNLHSDKSKPGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQHGDVVSAIRA-G 80

Query: 59 GQEMTM 64
          G E  +
Sbjct: 81 GDETKL 86

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + + + + + RV + G A R G+   GD++LE+NG+ ++G  
Sbjct: 30 KGDDEGIFISRVSEEGPAARAGV-RVGDKLLEVNGVALQGAE 70

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 1   GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
           GA +  E   + V  V +GG A R G +   D ++E++G  + G +
Sbjct: 103 GADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 148

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 12/52 (23%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
           V     +  +        E+  + Q+ D++ V+ Q+D  W      GE    
Sbjct: 20  VEITKAFFAKQAD-----EV--TLQQADVVLVLQQED-GWL----YGERLRD 59

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
            +  V  G  A R+GL    D ++E+NG  + G     V   +      E  +
Sbjct: 30 QYIRSVDPGSPAARSGL-RAQDRLIEVNGQNVEGLRHAEVVASIKA-REDEARL 81

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
           I+  +  G  A+  GL    D ++ +NG  +    
Sbjct: 32 QIIKDIEPGSPAEAAGL-KNNDLVVAVNGKSVEALD 66

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 46.1 bits (108), Expect = 9e-06
 Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 11/127 (8%)

Query: 170 IEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDR 229
           ++    E     L   +  L +    +  D       + +   ++      +    R+ +
Sbjct: 99  VKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRK 158

Query: 230 TKQTSHKSDGGGM----HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
            K  S + +           A FD+           EL  +F+ GD++ ++S+ + +W +
Sbjct: 159 VKSVSPQGNSVDRMAAPRAEALFDFTGNSK-----LEL--NFKAGDVIFLLSRINKDWLE 211

Query: 286 AYREGEE 292
               G  
Sbjct: 212 GTVRGAT 218

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
           ++ ++ +   A   GL   GD +  ING+   G +
Sbjct: 50 TLICKIQEDSPAHCAGL-QAGDVLANINGVSTEGFT 84

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
             A + YD +DD      E+  SF++ +IL V   +   WW+A
Sbjct: 8   AKALYPYDADDD---DAYEI--SFEQNEILQVSDIEG-RWWKA 44

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
           I+  +  G  A+  GL    D ++ +NG  +    
Sbjct: 31 QIIKDIEPGSPAEAAGLK-NNDLVVAVNGKSVEALD 65

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
            +  V  G  A++ GL   GD ++E+NG  +  ++
Sbjct: 29 QYIRLVEPGSPAEKAGL-LAGDRLVEVNGENVEKET 63

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 8/43 (18%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQ 285
             A +D+   D       EL  S ++GDI+ ++++     WW+
Sbjct: 8   AKARYDFCARDR-----SEL--SLKEGDIIKILNKKGQQGWWR 43

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           VIA   Y+P  D      +L   F+KG+ L ++ Q    WW+A
Sbjct: 9   VIALHSYEPSHD-----GDL--GFEKGEQLRILEQSG-EWWKA 43

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
                 + VIA +DY  + D     +EL    +K + L ++      WW+ 
Sbjct: 26  LHMTEEVIVIAKWDYTAQQD-----QEL--DIKKNERLWLLDDSK-TWWRV 68

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 8/43 (18%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           VIA +DY  + D     +EL    +K + L ++      WW+ 
Sbjct: 7   VIAKWDYTAQQD-----QEL--DIKKNERLWLLDDSK-TWWRV 41

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
            V RV +   A   GL   GD I  +NG+ + G     + DI+   +G  + +
Sbjct: 39 TFVARVHESSPAQLAGLT-PGDTIASVNGLNVEGIRHREIVDIIKA-SGNVLRL 90

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          + + RV  G  A    L   GD I  I+G      +
Sbjct: 29 LAISRVTPGSKAALANL-CIGDVITAIDGENTSNMT 63

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
            +  V     A+ +GL    D I+E+NG+ + GK    V   +    G E  +
Sbjct: 35 QFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQHGDVVSAIRA-GGDETKL 86

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 265 MSFQKGDILHVISQDDPNWWQAYREGEE 292
           ++ +KGDIL +++  + +WW+      +
Sbjct: 8   VTMKKGDILTLLNSTNKDWWKVEVNDRQ 35

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
            +  V  G  A + G+   GD ++ + G  + G  
Sbjct: 32 QFLWEVDPGLPAKKAGM-QAGDRLVAVAGESVEGLG 66

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQAYRE-GE 291
           S  S G        +D+  E        EL  +  +G+I+ V + +    W +     GE
Sbjct: 2   SSGSSGMATKARVMYDFAAEPGN----NEL--TVTEGEIITVTNPNVGGGWLEGKNNKGE 55

Query: 292 E 292
           +
Sbjct: 56  Q 56

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          +++  V+KGG A+  G L E D +  +NG+ +    
Sbjct: 41 IVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVE 74

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 1  GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          G  +R E   D  ++  + +G  A++ GLL +GD +L ING+ +  + 
Sbjct: 28 GFFLRIEKDTDGHLIRVIEEGSPAEKAGLL-DGDRVLRINGVFVDKEE 74

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           V+A +DY           +L  SFQKGD + V+ +    WW+A
Sbjct: 6   VVALYDYVSWSP-----DDL--SFQKGDQMVVLEESG-EWWKA 40

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
            +  V     A+ +GL    D I+E+NG+ + GK 
Sbjct: 35 QFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQ 69

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN-WWQAYREGEEDHT 295
           S   G  V   F +   ++       L  SF +GD+L ++  ++ + W      GE D T
Sbjct: 3   SGSSGQKVKTIFPHTAGNNK----TLL--SFAQGDVLTLLIPEEKDGWL----YGEHDTT 52

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 7/44 (15%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
           GM     + Y  +DD  I       +   GD + ++++D  + W
Sbjct: 1   GMENKVLYAYVQKDDDEI-------TITPGDKISLVARDTGSGW 37

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 11  VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
           + V RV +GG A+  GL   GD+I+++NG ++   +       L   + + + +
Sbjct: 66  IYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRL 118

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 1  GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          G  +R E   D  ++  + +G  A++ GL  +GD +L ING+ +  + 
Sbjct: 16 GFFLRIEKDTDGHLIRVIEEGSPAEKAGL-LDGDRVLRINGVFVDKEE 62

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
           +V  V  G  A   GL   GD I  ING  + G  
Sbjct: 36 HVVWSVEDGSPAQEAGL-RAGDLITHINGESVLGLV 70

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           +    DY   D            F++G+ L VIS +   WW+A
Sbjct: 20  LAVLSDYPSPDI-----SPP--IFRRGEKLRVISDEG-GWWKA 54

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 7/21 (33%), Positives = 16/21 (76%)

Query: 265 MSFQKGDILHVISQDDPNWWQ 285
           ++ +KGDIL +++  + +WW+
Sbjct: 6   VTMKKGDILTLLNSTNKDWWK 26

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
            +  V +GG+A R GL   GD ++E+NG  +    
Sbjct: 47 QYLESVDEGGVAWRAGL-RMGDFLIEVNGQNVVKVG 81

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 9/52 (17%)

Query: 239 GGGMHVIAHFDYDP-EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289
           G      A F + P  +D      EL    +  D L V  Q +  W++AY  
Sbjct: 1   GSEQTHRAIFRFVPRHED------EL--ELEVDDPLLVELQAEDYWYEAYNM 44

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
              G M V A F +   D+         +SF++GD++ ++  +  + W     GE + T
Sbjct: 3   LGSGRMRVKAIFSHAAGDN------STLLSFKEGDLITLLVPEARDGWH---YGESEKT 52

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          R + D + V RV   G A    LL  GD+I++ NG       
Sbjct: 31 RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIE 70

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
          R + D + V RV   G A    LL  GD+I++ NG       
Sbjct: 39 RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIE 78

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 12/71 (16%)

Query: 225 FRSDRTKQTSHKSDGGGMHVIAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQ-DDP 281
             + +    +  S+      +A +D+    ++ +         S  KG+ L V+    + 
Sbjct: 27  RWNSKENLLAGPSENDPNLFVALYDFVASGDNTL---------SITKGEKLRVLGYNHNG 77

Query: 282 NWWQAYREGEE 292
            W +A  +  +
Sbjct: 78  EWCEAQTKNGQ 88

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 11  VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
             +  V +GG+A R GL   GD ++E+NG  +    
Sbjct: 67  QYLESVDEGGVAWRAGL-RMGDFLIEVNGQNVVKVG 101

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           V A   Y    D      E+  SF KGD+  V ++ +  W   
Sbjct: 8   VRAILPYTKVPDT----DEI--SFLKGDMFIVHNELEDGWMWV 44

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 11/47 (23%)

Query: 244 VIAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
            +A +DY+   E D+         SF+KG+ L +++  + +WW A+ 
Sbjct: 5   FVALYDYESRTETDL---------SFKKGERLQIVNNTEGDWWLAHS 42

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 7/46 (15%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289
             A F + P  +      EL    +  D L V  Q +  W++AY  
Sbjct: 9   HRAIFRFVPRHE-----DEL--ELEVDDPLLVELQAEDYWYEAYNM 47

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN-WWQAYREGEEDHT 295
           S      V   F +    +       L  SF +GD++ ++  ++ + W      GE D +
Sbjct: 2   SHMKKQKVKTIFPHTAGSNK----TLL--SFAQGDVITLLIPEEKDGWL----YGEHDVS 51

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
          + V  V + GLA + GL   GDEILEIN       +  ++ D L  
Sbjct: 37 LYVNSVKETGLASKKGLK-AGDEILEINNRAADALNSSMLKDFLSQ 81

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA-YREGEE 292
            +V A FD++  D+     ++L   F+KGDIL +  + +  WW A   EG+ 
Sbjct: 137 EYVRALFDFNGNDE-----EDL--PFKKGDILRIRDKPEEQWWNAEDSEGKR 181

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
            S  +  +S  S     H +A +++           +L  S Q GD++ +       W++
Sbjct: 44  GSSGSSGSSGSSGDKERHGVAIYNFQGSGA-----PQL--SLQIGDVVRIQETCGD-WYR 95

Query: 286 AYREG 290
            Y   
Sbjct: 96  GYLIK 100

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 12/53 (22%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-----DPNWWQAYREGE 291
           V A  DY   D       EL    + GD++ VI        D  W    +E +
Sbjct: 47  VQAQHDYTATDT-----DEL--QLKAGDVVLVIPFQNPEEQDEGWLMGVKESD 92

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           S  T   + ++      VI     +  D        L  + + G+++ V   +    W+ 
Sbjct: 225 SVNTPLPNLQNGPIYARVIQKRVPNAYDKT-----AL--ALEVGELVKVTKINVSGQWEG 277

Query: 287 YREG 290
              G
Sbjct: 278 ECNG 281

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G  I +      V  ++          L +GD I EI    ++  +   V ++L
Sbjct: 26 GFAIADSPTGQKVKMILDSQWCQG---LQKGDIIKEIYHQNVQNLTHLQVVEVL 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	100.0
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	99.97
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.97
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.96
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.96
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	99.95
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	99.94
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	99.94
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	99.93
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	99.9
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	99.9
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.82
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.82
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.81
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	99.81
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.79
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.71
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.7
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.65
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.58
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	99.57
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.55
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.42
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.39
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	99.37
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.19
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.19
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.03
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.99
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.99
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.97
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	98.92
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	98.88
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	98.88
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.86
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.85
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.85
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.85
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.84
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.84
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.82
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.82
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.79
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.79
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.78
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.78
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.78
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.78
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.77
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.77
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.77
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.77
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.77
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.77
2awx_A	105	Synapse associated protein 97; membrane protein, s	98.77
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.76
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.76
2opg_A	98	Multiple PDZ domain protein; structural protein, s	98.75
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.75
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.75
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	98.75
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.75
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.75
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.75
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.74
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.74
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.74
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.73
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.73
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.73
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.72
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	98.72
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.72
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	98.72
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.71
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	98.71
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.71
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.71
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	98.71
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.7
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.7
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.69
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.69
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.68
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.68
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.68
2ego_A	96	General receptor for phosphoinositides 1- associat	98.68
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.67
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.67
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.67
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.67
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	98.67
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.66
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.66
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.66
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.65
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.65
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.65
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.65
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.65
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.65
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.64
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.64
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.64
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.63
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.63
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.62
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.62
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.62
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.62
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.62
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.62
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.61
3khf_A	99	Microtubule-associated serine/threonine-protein ki	98.61
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	98.61
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.61
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.61
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.61
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.61
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.61
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.61
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.6
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.6
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.6
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.6
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.59
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.59
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.59
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.58
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.58
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.58
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.57
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.57
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.57
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.57
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.57
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	98.56
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.56
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.56
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.56
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.56
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.54
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.54
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.54
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.54
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.54
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.53
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.51
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.51
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.49
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	98.49
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.49
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.49
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.49
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	98.48
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.48
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.47
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.45
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.45
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.44
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.44
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.44
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	98.44
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.43
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.43
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.43
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.41
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.4
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.39
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	98.39
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.39
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.38
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	97.73
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.37
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.36
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.36
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.35
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.33
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.32
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.31
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.31
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.3
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.29
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.25
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.21
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.18
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.17
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.14
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.12
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.11
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.11
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.11
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.11
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.93
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.83
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	97.8
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.8
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.75
2kl1_A	94	YLBL protein; structure genomics, structural genom	97.62
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	97.61
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	97.6
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.54
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.52
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.51
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	97.5
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	97.47
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	97.46
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.45
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.42
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.4
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.38
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	97.37
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.36
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.36
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.35
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	97.34
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.33
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.32
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.32
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.31
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.31
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.3
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	97.3
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.29
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.29
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.25
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.11
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.09
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.09
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	97.06
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.06
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.05
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.04
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.0
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	96.99
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.97
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	96.92
3k50_A	403	Putative S41 protease; structural genomics, joint	96.9
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	96.88
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.87
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	96.81
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	96.81
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	96.79
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	96.79
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.73
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.72
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	96.68
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.4
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.39
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.16
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.06
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.97
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	95.94
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.93
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.92
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.92
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.92
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	95.88
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.8
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.65
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.64
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.63
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	95.62
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.6
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.59
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.58
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	95.56
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.54
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.54
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.52
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.47
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.47
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.37
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.34
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.31
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.29
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.27
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.25
1via_A	175	Shikimate kinase; structural genomics, transferase	95.22
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	95.17
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	95.17
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.11
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.08
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.05
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.02
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	95.02
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.02
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.01
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.98
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.97
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.96
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.95
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	94.93
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.89
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.85
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.82
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	94.81
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.78
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.69
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	94.69
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.63
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	94.62
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.58
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	94.56
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.52
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	94.43
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.4
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	94.36
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.36
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	94.34
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	94.34
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	94.32
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.29
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	94.26
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.26
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.26
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.25
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.24
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.22
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.21
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.19
3bos_A	242	Putative DNA replication factor; P-loop containing	94.15
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	94.13
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.11
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.09
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	94.08
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.08
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	94.07
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	94.07
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.04
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.02
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.98
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.98
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.97
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	93.93
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	93.93
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	93.92
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	93.92
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	93.89
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	93.89
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.89
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.86
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	93.85
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	93.85
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.84
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	93.84
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	93.81
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	93.79
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.73
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	93.71
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	93.71
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	93.69
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	93.66
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	93.66
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.65
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.6
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	93.6
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	93.58
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	93.58
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	93.54
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	93.52
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	93.51
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	93.51
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	93.5
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	93.49
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	93.46
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	93.46
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	93.43
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	93.39
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	93.38
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.38
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.35
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	93.34
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	93.34
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.33
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.32
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.31
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	93.28
4a74_A	231	DNA repair and recombination protein RADA; hydrola	93.24
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	93.23
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	93.22
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	93.22
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	93.19
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.16
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	93.16
2chg_A	226	Replication factor C small subunit; DNA-binding pr	93.16
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.13
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.11
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.08
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	93.07
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.06
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	93.05
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	93.05
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.04
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.04
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	93.03
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.02
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	93.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	92.95
1g6h_A	257	High-affinity branched-chain amino acid transport	92.95
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	92.95
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	92.94
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	92.92
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	92.92
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	92.92
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	92.9
2ghi_A	260	Transport protein; multidrug resistance protein, M	92.9
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	92.88
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	92.87
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.87
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	92.83
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	92.83
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	92.83
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	92.81
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	92.81
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	92.78
2wji_A	165	Ferrous iron transport protein B homolog; membrane	92.76
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	92.75
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	92.73
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	92.72
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	92.72
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	92.71
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	92.71
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	92.7
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	92.7
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.7
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.69
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	92.69
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	92.68
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	92.66
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	92.65
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.65
2cvh_A	220	DNA repair and recombination protein RADB; filamen	92.63
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	92.63
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	92.61
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	92.6
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	92.55
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.54
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	92.53
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	92.53
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	92.53
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	92.52
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	92.52
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	92.48
3co5_A	143	Putative two-component system transcriptional RES	92.46
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	92.45
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	92.45
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	92.43
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	92.42
3kta_A	182	Chromosome segregation protein SMC; structural mai	92.41
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	92.39
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	92.35
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	92.34
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	92.32
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	92.29
1awj_A	77	ITK; transferase, regulatory intramolecular comple	92.29
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	92.27
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	92.25
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	92.21
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	92.21
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	92.2
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	92.2
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	92.2
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	92.2
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	92.18
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	92.16
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	92.15
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	92.14
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	92.12
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	92.1
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	92.01
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	92.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.99
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	91.99
2og2_A	359	Putative signal recognition particle receptor; nuc	91.97
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	91.96
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	91.95
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	91.95
1u3o_A	82	Huntingtin-associated protein-interacting protein;	91.94
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	91.93
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	91.91
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	91.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	91.9
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	91.9
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	91.86
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	91.85
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	91.84
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	91.82
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	91.8
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	91.78
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	91.75
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	91.75
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	91.75
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	91.74
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	91.73
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	91.72
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	91.72
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	91.71

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=100.00  E-value=3.7e-35  Score=311.76  Aligned_cols=232  Identities=32%  Similarity=0.638  Sum_probs=198.6

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe--------------
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM--------------   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~--------------   64 (366)
                      |+++...  ..+++|..|.+||+|+++|.|++||+|++|||.++.++++++++.+|+...+.++++              
T Consensus       321 G~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r~~~~~~~~~~~  400 (721)
T 2xkx_A          321 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK  400 (721)
T ss_pred             cEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEeCchhhhhhhhh
Confidence            4455422  368999999999999999999999999999999999999999999998765544331              


Q ss_pred             ---------------------------------------------------------------eccCccc----------
Q psy16959         65 ---------------------------------------------------------------GREAWKT----------   71 (366)
Q Consensus        65 ---------------------------------------------------------------~~~~w~p----------   71 (366)
                                                                                     +..||+.          
T Consensus       401 ~~~~~~~~~~~s~~~g~~~~~~~~~~~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~  480 (721)
T 2xkx_A          401 IHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETD  480 (721)
T ss_pred             hhhhhhhcccccccCCccccccccccceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccC
Confidence                                                                           4678872          


Q ss_pred             ------ccccccCc--------------cCccCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cCC
Q psy16959         72 ------SHAFRHTE--------------HTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SDR  130 (366)
Q Consensus        72 ------s~~~~~~~--------------~~~~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~  130 (366)
                            |..+.+++              +..++...+++||+|.++  .+..+|+|||+||+   |++|+++|.+. ++.
T Consensus       481 ~~G~iPs~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Ye~V~~~--~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~  555 (721)
T 2xkx_A          481 DIGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQM--EVHYARPIIILGPT---KDRANDDLLSEFPDK  555 (721)
T ss_pred             ccceeecHHHHHHHHhhhcccccccCcchhhcccccCCCceeeecc--cCCCCCEEEEECCC---HHHHHHHHHHhCccc
Confidence                  22221110              112355678899999987  45678999999995   99999999876 568


Q ss_pred             cceeeeccCCCCCCCCCCCcceeec-CHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccc
Q psy16959        131 FAAAIPHTSRPMKDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLT  209 (366)
Q Consensus       131 ~~~~~~~tTr~pr~~E~~g~~y~~v-s~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~  209 (366)
                      |.++++||||+||++|.+|++|||| |.++|+++++.|.|+||++++|++||                            
T Consensus       556 ~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~YG----------------------------  607 (721)
T 2xkx_A          556 FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYG----------------------------  607 (721)
T ss_pred             eeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccce----------------------------
Confidence            9999999999999999999999999 99999999999999999999999999                            


Q ss_pred             cccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959        210 DEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE  289 (366)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  289 (366)
                                                                                                      
T Consensus       608 --------------------------------------------------------------------------------  607 (721)
T 2xkx_A          608 --------------------------------------------------------------------------------  607 (721)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCC
Q psy16959        290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD  355 (366)
Q Consensus       290 ~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~  355 (366)
                               |+.+.|++++++|++|+|++++.++++++...++|++|||.|++.++|++ +..|+.
T Consensus       608 ---------t~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R~t  663 (721)
T 2xkx_A          608 ---------TSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRIT  663 (721)
T ss_pred             ---------eeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHH-HhccCC
Confidence                     89999999999999999999999998898888899999999999999998 777875

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=99.97  E-value=4.9e-32  Score=258.40  Aligned_cols=163  Identities=33%  Similarity=0.671  Sum_probs=141.5

Q ss_pred             cccccccC-----ccCccCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCC
Q psy16959         71 TSHAFRHT-----EHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKD  144 (366)
Q Consensus        71 ps~~~~~~-----~~~~~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~  144 (366)
                      ||+.+.++     ........++.+||+|.++  .+..+|||||+||+   |++|..+|+++ |+.|.++++||||+||+
T Consensus        64 PS~~~~e~~~~~~~~~~~~~~~~~~YE~V~~~--~~~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~  138 (292)
T 3tvt_A           64 PSKRRWERKMRARDRSVKSEENVLSYEAVQRL--SINYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKRE  138 (292)
T ss_dssp             ECHHHHHHHHHC----------CCCEEEEEEE--ECSSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCT
T ss_pred             eChHHHHHHHHHhhccccccccccchheEEec--cCCCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcC
Confidence            56555443     2233455678999999988  45788999999995   99999999875 78899999999999999


Q ss_pred             CCCCCcceeec-CHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccce
Q psy16959        145 GEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFN  223 (366)
Q Consensus       145 ~E~~g~~y~~v-s~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
                      +|++|++|||| +.++|+++++.|.|+||++++|++||                                          
T Consensus       139 gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~YG------------------------------------------  176 (292)
T 3tvt_A          139 YEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYG------------------------------------------  176 (292)
T ss_dssp             TCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEE------------------------------------------
T ss_pred             CccCCccccccCCHHHHHHHHhcCceEEEEEEccceeE------------------------------------------
Confidence            99999999999 88999999999999999999999999                                          


Q ss_pred             ecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHH
Q psy16959        224 VFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDA  303 (366)
Q Consensus       224 ~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  303 (366)
                                                                                                 |+.++
T Consensus       177 ---------------------------------------------------------------------------T~~~~  181 (292)
T 3tvt_A          177 ---------------------------------------------------------------------------TSVAS  181 (292)
T ss_dssp             ---------------------------------------------------------------------------EEHHH
T ss_pred             ---------------------------------------------------------------------------EehHH
Confidence                                                                                       88999


Q ss_pred             HHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCC
Q psy16959        304 IRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD  355 (366)
Q Consensus       304 i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~  355 (366)
                      |++++++|++|+|+++++++.+++...++|++|||.|+|.+.|++|+.+|++
T Consensus       182 V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~  233 (292)
T 3tvt_A          182 VREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE  233 (292)
T ss_dssp             HHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCT
T ss_pred             HHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCc
Confidence            9999999999999999999999998899999999999999999998877765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.97  E-value=1.9e-30  Score=232.22  Aligned_cols=136  Identities=33%  Similarity=0.704  Sum_probs=128.6

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccch
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLR  183 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~  183 (366)
                      |||||+|||||||+||+++|.+. |+.|.++++||||+||++|.+|++|||||.++|+++++.|.|+||++++|++||  
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YG--   79 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYG--   79 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE--
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceee--
Confidence            79999999999999999999875 778999999999999999999999999999999999999999999999999999  


Q ss_pred             hhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhh
Q psy16959        184 TKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKEL  263 (366)
Q Consensus       184 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~  263 (366)
                                                                                                      
T Consensus        80 --------------------------------------------------------------------------------   79 (186)
T 1ex7_A           80 --------------------------------------------------------------------------------   79 (186)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccC-CCCcEEEEEeCCC
Q psy16959        264 GMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSS-DLKPFVIFVAPPP  342 (366)
Q Consensus       264 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~-~~~p~vi~~~~~~  342 (366)
                                                         ++.+.++.++++|++|+++++++++..++.. ++.+++||+.|+|
T Consensus        80 -----------------------------------t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps  124 (186)
T 1ex7_A           80 -----------------------------------STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPS  124 (186)
T ss_dssp             -----------------------------------EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSC
T ss_pred             -----------------------------------eecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCC
Confidence                                               7899999999999999999999999888754 6789999999999


Q ss_pred             HHHHHHHHHhcCCCC
Q psy16959        343 FELLKQKRIRRGDNF  357 (366)
Q Consensus       343 ~~~l~~~~~~r~~~~  357 (366)
                      .++|++|+..||..-
T Consensus       125 ~e~L~~RL~~Rg~e~  139 (186)
T 1ex7_A          125 VEDLKKRLEGRGTET  139 (186)
T ss_dssp             HHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999999999753

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.96  E-value=1.5e-29  Score=250.63  Aligned_cols=200  Identities=21%  Similarity=0.359  Sum_probs=159.5

Q ss_pred             CcEEEE-eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe-------------
Q psy16959          1 GATIRN-EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM-------------   64 (366)
Q Consensus         1 G~~i~~-~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~-------------   64 (366)
                      |+++.. ...+++|+.|.+||||+++| |++||+|++|||.++.++++++++.+|+.  .+..+++.             
T Consensus        22 G~~i~gg~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~~~~~~~  100 (391)
T 3tsz_A           22 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVE  100 (391)
T ss_dssp             CEEEEEETTTEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHGGGTS
T ss_pred             eEEEEecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCcccccccc
Confidence            667765 45799999999999999999 99999999999999999999999999985  34455553             


Q ss_pred             ----------------------------------------eccCcc----------------cccccccC------c---
Q psy16959         65 ----------------------------------------GREAWK----------------TSHAFRHT------E---   79 (366)
Q Consensus        65 ----------------------------------------~~~~w~----------------ps~~~~~~------~---   79 (366)
                                                              +..||+                ||+.+.++      .   
T Consensus       101 ~~~~~~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e~~~~~~~~~~~  180 (391)
T 3tsz_A          101 SDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPK  180 (391)
T ss_dssp             SCCSCCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHHHHHSSCCC---
T ss_pred             cccccccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHHHHHHHHhhhcc
Confidence                                                    256998                34432221      0   


Q ss_pred             -----------------------------cCccCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cC
Q psy16959         80 -----------------------------HTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SD  129 (366)
Q Consensus        80 -----------------------------~~~~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~  129 (366)
                                                   ++.++...+++||+|.++.  +..+|||||+||+|   ++|.++|.++ |+
T Consensus       181 ~~~~~~~~~~~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~YE~V~~~~--~~~~r~iVlsGPsg---~tl~~~L~~~~p~  255 (391)
T 3tsz_A          181 TAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLRE--AGFLRPVTIFGPIA---DVAREKLAREEPD  255 (391)
T ss_dssp             ------------------------------------CCCSEEEEEEEE--CSSCCCEEEESTTH---HHHHHHHHHHCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccCCCcceEECcC--CCCCCEEEEECCCH---HHHHHHHHhhCcc
Confidence                                         0011233577899999873  56889999999997   8999999875 66


Q ss_pred             CcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccc
Q psy16959        130 RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLT  209 (366)
Q Consensus       130 ~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~  209 (366)
                      .|..    |||+||++|++|++||||                                                      
T Consensus       256 ~~~~----~tr~pR~gE~dG~~Y~Fv------------------------------------------------------  277 (391)
T 3tsz_A          256 IYQI----AKSEPRDAGTDQRSSGII------------------------------------------------------  277 (391)
T ss_dssp             TEEE----CCCCCCCSSSCCC--CCC------------------------------------------------------
T ss_pred             cccc----ccCCCCCcccCCccCCcC------------------------------------------------------
Confidence            5543    689999999999999985                                                      


Q ss_pred             cccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959        210 DEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE  289 (366)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  289 (366)
                                                                                                      
T Consensus       278 --------------------------------------------------------------------------------  277 (391)
T 3tsz_A          278 --------------------------------------------------------------------------------  277 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcC
Q psy16959        290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG  354 (366)
Q Consensus       290 ~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~  354 (366)
                                +.++|++++++|++|+|+++++++++++...++|++|||.|+|.++|++++.++.
T Consensus       278 ----------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~  332 (391)
T 3tsz_A          278 ----------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLC  332 (391)
T ss_dssp             ----------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHC
T ss_pred             ----------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCC
Confidence                      3668999999999999999999999999888999999999999999999755443

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=255.68  Aligned_cols=200  Identities=21%  Similarity=0.344  Sum_probs=153.2

Q ss_pred             CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe-------------
Q psy16959          1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM-------------   64 (366)
Q Consensus         1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~-------------   64 (366)
                      |+++... ..|++|++|.+||||+++| |++||+|++|||.++.++++++++.+|+.  .++.+++.             
T Consensus        14 G~~i~gg~~~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~~~~~~~~   92 (468)
T 3shw_A           14 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVE   92 (468)
T ss_dssp             CEEEEEETTTEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHHHHHH
T ss_pred             ceEEEccCcCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCccchhhhc
Confidence            5566433 4789999999999999999 99999999999999999999999999987  45666654             


Q ss_pred             ----------------------------------------eccCcc----------------cccccccCc---------
Q psy16959         65 ----------------------------------------GREAWK----------------TSHAFRHTE---------   79 (366)
Q Consensus        65 ----------------------------------------~~~~w~----------------ps~~~~~~~---------   79 (366)
                                                              +..||+                ||+.+.++.         
T Consensus        93 ~~~g~s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~  172 (468)
T 3shw_A           93 SDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPK  172 (468)
T ss_dssp             HTCCCCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHC---
T ss_pred             cccccccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHHHHHHHhhhhhc
Confidence                                                    247998                344322210         


Q ss_pred             -----------------------------cCccCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cC
Q psy16959         80 -----------------------------HTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SD  129 (366)
Q Consensus        80 -----------------------------~~~~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~  129 (366)
                                                   ++.++...+++||+|.++  .+..+|||||+||+|+|   |.++|.++ |+
T Consensus       173 ~~~~~~~~f~~~~~~r~~kk~~~~~~~~~~~~~~~~~~~~YEeV~~~--~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~  247 (468)
T 3shw_A          173 TAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLR--EAGFLRPVTIFGPIADV---AREKLAREEPD  247 (468)
T ss_dssp             ----------------------------------CCCCCSEEEEEEE--CCSSCCCEEEESTTHHH---HHHHHHHHCTT
T ss_pred             cccccccchhhhccccccccccccchhhcccccccccCCCcceeEcc--cCCCCCEEEEECCCHHH---HHHHHHHhCCC
Confidence                                         011233467899999987  45689999999999998   99998865 66


Q ss_pred             CcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccc
Q psy16959        130 RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLT  209 (366)
Q Consensus       130 ~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~  209 (366)
                      .|..   +||| ||++|++|++|||                                                       
T Consensus       248 ~f~s---~~TR-pR~gE~dG~~Y~F-------------------------------------------------------  268 (468)
T 3shw_A          248 IYQI---AKSE-PRDAGTDQRSSGI-------------------------------------------------------  268 (468)
T ss_dssp             TEEE---CCCB-C----------CB-------------------------------------------------------
T ss_pred             ceee---ecCC-CCCcccccccCCc-------------------------------------------------------
Confidence            6654   4699 9999999999988                                                       


Q ss_pred             cccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959        210 DEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE  289 (366)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  289 (366)
                                                                                                      
T Consensus       269 --------------------------------------------------------------------------------  268 (468)
T 3shw_A          269 --------------------------------------------------------------------------------  268 (468)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcC
Q psy16959        290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG  354 (366)
Q Consensus       290 ~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~  354 (366)
                               |+.+.|++++++|++|+|+++++++++++...++|++|||.|+|.++|++++.++.
T Consensus       269 ---------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~  324 (468)
T 3shw_A          269 ---------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLC  324 (468)
T ss_dssp             ---------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHC
T ss_pred             ---------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccC
Confidence                     36889999999999999999999999999888999999999999999998655554

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=99.95  E-value=1e-28  Score=236.10  Aligned_cols=150  Identities=36%  Similarity=0.736  Sum_probs=138.2

Q ss_pred             cCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeec-CHHHH
Q psy16959         83 FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFI-TRAQF  160 (366)
Q Consensus        83 ~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~v-s~~ef  160 (366)
                      +....+++||+|.++.  +..+|+|||+||   ||+||+++|.+. |+.|.+++++|||+||++|++|++|||| |.++|
T Consensus        86 ~~~~~~~~Ye~V~~~~--~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef  160 (295)
T 1kjw_A           86 GREDSVLSYETVTQME--VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKM  160 (295)
T ss_dssp             CCCCCCCCEEEEEEEE--CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHH
T ss_pred             cccCCCCCcceeeeec--CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHH
Confidence            4556789999999873  467899999999   699999999875 5689999999999999999999999999 99999


Q ss_pred             HHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCC
Q psy16959        161 ELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGG  240 (366)
Q Consensus       161 ~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  240 (366)
                      +++++.|.|+|+++++|++||                                                           
T Consensus       161 ~~~i~~g~flE~~~~~g~~YG-----------------------------------------------------------  181 (295)
T 1kjw_A          161 EKDIQAHKFIEAGQYNSHLYG-----------------------------------------------------------  181 (295)
T ss_dssp             HHHHHTTCEEEEEEETTEEEE-----------------------------------------------------------
T ss_pred             HHHHHCCCcEEEEEEcCcEee-----------------------------------------------------------
Confidence            999999999999999999999                                                           


Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccc
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHP  320 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p  320 (366)
                                                                                |+.+.|++++++|++|+|++++
T Consensus       182 ----------------------------------------------------------t~~~~V~~~~~~G~~vildid~  203 (295)
T 1kjw_A          182 ----------------------------------------------------------TSVQSVREVAEQGKHCILDVSA  203 (295)
T ss_dssp             ----------------------------------------------------------EEHHHHHHHHHTTCEEEECCCT
T ss_pred             ----------------------------------------------------------eeHHHHHHHHhcCCeEEEEeCH
Confidence                                                                      7899999999999999999999


Q ss_pred             hhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCC
Q psy16959        321 QSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD  355 (366)
Q Consensus       321 ~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~  355 (366)
                      +++..++....+|++|||.|+|.++|++ +.+|+.
T Consensus       204 ~g~~~l~~~~~~pi~IfI~pps~~~L~~-L~~R~t  237 (295)
T 1kjw_A          204 NAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRIT  237 (295)
T ss_dssp             THHHHHHHTTCCCEEEEECCSSHHHHHH-HCTTSC
T ss_pred             HHHHHHHhcccCCeEEEEECCCHHHHHH-HHhcCC
Confidence            9998888778899999999999999998 777774

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=99.94  E-value=9.1e-30  Score=243.63  Aligned_cols=195  Identities=14%  Similarity=0.117  Sum_probs=146.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCC---------cceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEE
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDR---------FAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGE  174 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~---------~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~  174 (366)
                      +++|+|+||||||||+|+..|++..+.         +...++.+|++|+++|.+|++|||++..+|.+.++.+.|.+.+ 
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a-   81 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA-   81 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH-
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH-
Confidence            457899999999999999999987543         2345778899999999999999999999999999999998887 


Q ss_pred             EecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---CC
Q psy16959        175 YEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YD  251 (366)
Q Consensus       175 ~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~  251 (366)
                             ...+.+++++|+.||                                       +|||||||++||+.   ..
T Consensus        82 -------~~~i~~i~~~gk~pI---------------------------------------lVGGTglYi~aLl~g~~~~  115 (322)
T 3exa_A           82 -------TPLITEIHERGRLPF---------------------------------------LVGGTGLYVNAVIHQFNLG  115 (322)
T ss_dssp             -------HHHHHHHHHTTCEEE---------------------------------------EESCCHHHHHHHHHTCCCC
T ss_pred             -------HHHHHHHHhCCCcEE---------------------------------------EEcCcHHHHHHHHcCCcCC
Confidence                   777888889999999                                       99999999999953   23


Q ss_pred             CC-CCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhcc-cc
Q psy16959        252 PE-DDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKIL-RS  328 (366)
Q Consensus       252 p~-~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l-~~  328 (366)
                      |. .|..+|.+          +...+... +...+..++...|| ++..|+++|.+|++||+|||.++|.|.+.... ..
T Consensus       116 ~~~~~~~~R~~----------l~~~~~~~-g~~~L~~~L~~~DP~~A~~i~pnd~~Ri~RALEV~~~TG~~~S~~~~~~~  184 (322)
T 3exa_A          116 DIRADEDYRHE----------LEAFVNSY-GVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQARHEE  184 (322)
T ss_dssp             CCBCCHHHHHH----------HHHHHHHS-CHHHHHHHHHTTCHHHHTTSCTTCHHHHHHHHHHHHHTC-----------
T ss_pred             CCCCCHHHHHH----------HHHHHHhc-CHHHHHHHHHhhCHHHHhhcCcccHHHHHHHHHHHHHHCCCHHHHhhhcc
Confidence            33 23334444          22233333 33445556666666 88899999999999999999999999554222 11


Q ss_pred             --CCCCcEEEEEeCCCHHHHHHHHHhcCCC
Q psy16959        329 --SDLKPFVIFVAPPPFELLKQKRIRRGDN  356 (366)
Q Consensus       329 --~~~~p~vi~~~~~~~~~l~~~~~~r~~~  356 (366)
                        ...+.+++|+..++|+.|++||++|-|.
T Consensus       185 ~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~  214 (322)
T 3exa_A          185 ETPSPYNLVMIGLTMERDVLYDRINRRVDQ  214 (322)
T ss_dssp             ---CCSEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Confidence              2345666666668999999999999654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=99.94  E-value=4.8e-30  Score=245.21  Aligned_cols=197  Identities=16%  Similarity=0.075  Sum_probs=151.9

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhccCC---------cceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEE
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDSDR---------FAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEH  172 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~~---------~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~  172 (366)
                      .++++|+|+||||||||+|+..|++..+.         +...++.+|++|+++|.+|++|||++..+|.+.++.+.|.+.
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~   87 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD   87 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence            45678999999999999999999987553         333457899999999999999999999999999999999888


Q ss_pred             EEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---
Q psy16959        173 GEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---  249 (366)
Q Consensus       173 ~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---  249 (366)
                      +        ...+.+++++|+.||                                       +|||||||++|+++   
T Consensus        88 a--------~~~i~~i~~~g~~pi---------------------------------------lVGGTglYi~all~gl~  120 (316)
T 3foz_A           88 A--------LAEMADITAAGRIPL---------------------------------------LVGGTMLYFKALLEGLS  120 (316)
T ss_dssp             H--------HHHHHHHHHTTCEEE---------------------------------------EEESCHHHHHHHHSCCC
T ss_pred             H--------HHHHHHHHhCCCcEE---------------------------------------EEcCcHHHHHHHHcCcC
Confidence            7        677888889999999                                       99999999999953   


Q ss_pred             CCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhc-cc
Q psy16959        250 YDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKI-LR  327 (366)
Q Consensus       250 ~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~-l~  327 (366)
                      ..|+.|..+|.+          +...+.. .+...+..++...|| ++..|+++|.+|++||+|||.+++.|.+... ..
T Consensus       121 ~~p~~~~~~R~~----------l~~~~~~-~g~~~l~~~L~~~DP~~A~ri~pnd~~Ri~RALEV~~~TG~~~S~~~~~~  189 (316)
T 3foz_A          121 PLPSADPEVRAR----------IEQQAAE-QGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTS  189 (316)
T ss_dssp             CCCCCCHHHHHH----------HHHHHHH-HHHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHHHHHHHSSCHHHHHTSC
T ss_pred             CCCCCCHHHHHH----------HHHHHHh-cCHHHHHHHHHHhCHHHHhhCCCccHHHHHHHHHHHHHHCCCHHHHhhcc
Confidence            466666655554          2222222 233334445555566 7888999999999999999999999955422 21


Q ss_pred             -cCCCCcEEEEEeCC-CHHHHHHHHHhcCCC
Q psy16959        328 -SSDLKPFVIFVAPP-PFELLKQKRIRRGDN  356 (366)
Q Consensus       328 -~~~~~p~vi~~~~~-~~~~l~~~~~~r~~~  356 (366)
                       ....+.+++|+..+ +|+.|++||++|-|.
T Consensus       190 ~~~~~~~~~~i~L~~~~R~~L~~RI~~Rvd~  220 (316)
T 3foz_A          190 GDALPYQVHQFAIAPASRELLHQRIEQRFHQ  220 (316)
T ss_dssp             CCCCSSEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence             12234555554445 999999999999654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=99.93  E-value=1.3e-27  Score=235.91  Aligned_cols=193  Identities=15%  Similarity=0.124  Sum_probs=149.9

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccCC---------cceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEE
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSDR---------FAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEY  175 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~~---------~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~  175 (366)
                      ++|+|+||||||||+|+..|++..+.         +...++++|++|+.+|.+|++|||++..+|.+.++.+.|++++  
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a--   80 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC--   80 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH--
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH--
Confidence            57899999999999999999986443         2333678999999999999999999999999999999999998  


Q ss_pred             ecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCC---C
Q psy16959        176 EKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYD---P  252 (366)
Q Consensus       176 ~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~---p  252 (366)
                            ...+.+++++|+.||                                       +||||||||+||++..   |
T Consensus        81 ------~~~i~~i~~~g~~pi---------------------------------------lVGGTglYi~aLl~gl~~~~  115 (409)
T 3eph_A           81 ------MNAIEDIHRRGKIPI---------------------------------------VVGGTHYYLQTLFNKRVDTK  115 (409)
T ss_dssp             ------HHHHHHHHTTTCEEE---------------------------------------EECSCGGGGGGGGTCSCCCS
T ss_pred             ------HHHHHHHHhcCCCEE---------------------------------------EECChHHHHHHHHccccCCC
Confidence                  788889999999999                                       9999999999997532   2


Q ss_pred             C-CCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhcc-c-c
Q psy16959        253 E-DDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKIL-R-S  328 (366)
Q Consensus       253 ~-~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l-~-~  328 (366)
                      + .+...+..           ...+...+....++ ++...|| ++..|+++|.+||+||+|||..+|.|.+.... . .
T Consensus       116 ~~~~~~~r~~-----------~~~~~~~g~~~L~~-~L~~~DP~~A~rihpnd~~Ri~RALEV~~~TG~~~S~~~~~~~~  183 (409)
T 3eph_A          116 SSERKLTRKQ-----------LDILESTDPDVIYN-TLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKI  183 (409)
T ss_dssp             SSCCCCCHHH-----------HHHHTCSSSSSHHH-HHHHSCHHHHTTSCTTCHHHHHHHHHHHHHHCSCHHHHHHTCCC
T ss_pred             CccCHHHHHH-----------HHHHhccCHHHHHH-HHHHhCHHHHHhcCcccHHHHHHHHHHHHHHCCCHHHHHhhccC
Confidence            2 22222222           23333333444444 4555566 88889999999999999999999999554221 1 2


Q ss_pred             CCCCcEEEEEeCCCHHHHHHHHHhcCCC
Q psy16959        329 SDLKPFVIFVAPPPFELLKQKRIRRGDN  356 (366)
Q Consensus       329 ~~~~p~vi~~~~~~~~~l~~~~~~r~~~  356 (366)
                      ...|..++|+...+|+.|++||++|-|.
T Consensus       184 ~~~~~~~~i~L~~~R~~L~~RI~~Rvd~  211 (409)
T 3eph_A          184 TLKFDTLFLWLYSKPEPLFQRLDDRVDD  211 (409)
T ss_dssp             CCSSEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEEeCCHHHHHHHHHHHHHH
Confidence            2345666666678999999999999654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=99.90  E-value=1.1e-23  Score=189.70  Aligned_cols=127  Identities=33%  Similarity=0.768  Sum_probs=117.9

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccc
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSY  179 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~  179 (366)
                      +..+++|+|+||||+|||||++.|++. ++.+..++++|||+|+.+|.+|++|+|++.++|.+++..+.|++++++.|++
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~   95 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNM   95 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhcee
Confidence            346789999999999999999999976 4478899999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcc
Q psy16959        180 YGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIP  259 (366)
Q Consensus       180 YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~  259 (366)
                      ||                                                                              
T Consensus        96 YG------------------------------------------------------------------------------   97 (197)
T 3ney_A           96 FG------------------------------------------------------------------------------   97 (197)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            99                                                                              


Q ss_pred             hhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEe
Q psy16959        260 CKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVA  339 (366)
Q Consensus       260 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~  339 (366)
                                                             +..+.+++++++|++|+|+++++++..++.....|++||+.
T Consensus        98 ---------------------------------------t~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~  138 (197)
T 3ney_A           98 ---------------------------------------TKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA  138 (197)
T ss_dssp             ---------------------------------------EEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEE
T ss_pred             ---------------------------------------cchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEe
Confidence                                                   67888999999999999999999999888777789999999


Q ss_pred             CCCHH
Q psy16959        340 PPPFE  344 (366)
Q Consensus       340 ~~~~~  344 (366)
                      |+|.+
T Consensus       139 Pps~~  143 (197)
T 3ney_A          139 PTDQG  143 (197)
T ss_dssp             ECCBS
T ss_pred             CCCcc
Confidence            99875

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=99.90  E-value=5.5e-26  Score=219.07  Aligned_cols=196  Identities=15%  Similarity=0.055  Sum_probs=103.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceee---------eccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEE
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAI---------PHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHG  173 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~---------~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~  173 (366)
                      ++++|+|+||+|||||+|+..|++..+...+++         +.+|++|+.+|.+|++|||++..++...++.+.|.+..
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a   83 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA   83 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence            556899999999999999999998765433333         66899999999999999999999998888888887776


Q ss_pred             EEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---C
Q psy16959        174 EYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---Y  250 (366)
Q Consensus       174 ~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~  250 (366)
                              ...+.+++++|+.+|                                       ++||+|+|++|++.   .
T Consensus        84 --------~~~i~~i~~~g~~~I---------------------------------------lvGGt~~y~~all~g~~~  116 (323)
T 3crm_A           84 --------LAAMAKATARGRIPL---------------------------------------LVGGTMLYYKALLEGLAD  116 (323)
T ss_dssp             --------HHHHHHHHHTTCEEE---------------------------------------EEESCHHHHHHHHCCC--
T ss_pred             --------HHHHHHHHHcCCeEE---------------------------------------EECCchhhHHHHHcCCCC
Confidence                    666778888999999                                       99999999999954   3


Q ss_pred             CCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhh-cccc
Q psy16959        251 DPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLK-ILRS  328 (366)
Q Consensus       251 ~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~-~l~~  328 (366)
                      .|..+..+|.+           +.......+...+..++...|| ++..|+++|.+|++||+|||..++.|.+.. ....
T Consensus       117 ~p~~~~~~R~~-----------l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~Ri~RALEv~~~tG~~~s~~~~~~~  185 (323)
T 3crm_A          117 MPGADPEVRAA-----------IEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQS  185 (323)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCHHHHHH-----------HHHHHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHHHHHHHHHHHHHCCCHHHHHhhcc
Confidence            55555555554           2222222222334455666677 888999999999999999999999995542 1111


Q ss_pred             ------------CCCCcEEEE-EeCCCHHHHHHHHHhcCCC
Q psy16959        329 ------------SDLKPFVIF-VAPPPFELLKQKRIRRGDN  356 (366)
Q Consensus       329 ------------~~~~p~vi~-~~~~~~~~l~~~~~~r~~~  356 (366)
                                  ...|..++| +.+++|+.|++||++|-|.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~L~~RI~~Rvd~  226 (323)
T 3crm_A          186 AEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQ  226 (323)
T ss_dssp             --------------CSEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCceEEEEEcCCCHHHHHHHHHHHHHH
Confidence                        112444444 5544699999999999653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.82  E-value=1.8e-20  Score=169.54  Aligned_cols=136  Identities=34%  Similarity=0.552  Sum_probs=119.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc-CCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG  181 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~-~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG  181 (366)
                      .+++|+|+||+|||||||++.|+... ..+..++++|||+|+.+|.+|++|+|++..+|..++..+.|++++++.+++||
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg   86 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG   86 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence            46789999999999999999999864 45899999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959        182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK  261 (366)
Q Consensus       182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~  261 (366)
                                                                                                      
T Consensus        87 --------------------------------------------------------------------------------   86 (208)
T 3tau_A           87 --------------------------------------------------------------------------------   86 (208)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959        262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP  341 (366)
Q Consensus       262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~  341 (366)
                                                           +..+.+.+++++|++|++++.+.+...+......+.+||+.|+
T Consensus        87 -------------------------------------~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~p  129 (208)
T 3tau_A           87 -------------------------------------TPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPP  129 (208)
T ss_dssp             -------------------------------------EEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECT
T ss_pred             -------------------------------------CcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCC
Confidence                                                 6778899999999999999999888777655556799999999


Q ss_pred             CHHHHHHHHHhcCC
Q psy16959        342 PFELLKQKRIRRGD  355 (366)
Q Consensus       342 ~~~~l~~~~~~r~~  355 (366)
                      +.++|++|+.+|+.
T Consensus       130 s~~~l~~Rl~~R~~  143 (208)
T 3tau_A          130 DLSELKNRIIGRGT  143 (208)
T ss_dssp             TTTTSSCC------
T ss_pred             CHHHHHHHHHhcCC
Confidence            99999999999985

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.81  E-value=2e-19  Score=161.74  Aligned_cols=136  Identities=28%  Similarity=0.584  Sum_probs=120.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCC-cceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDR-FAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG  181 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~-~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG  181 (366)
                      .+++|+|+||+|||||||++.|++..+. +..++++|||+|+.+|.+|.+|+|++.++|..++..|.|++++++.|+.||
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYG   90 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeec
Confidence            4678999999999999999999987544 888899999999999999999999999999999999999999999999999


Q ss_pred             chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959        182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK  261 (366)
Q Consensus       182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~  261 (366)
                                                                                                      
T Consensus        91 --------------------------------------------------------------------------------   90 (204)
T 2qor_A           91 --------------------------------------------------------------------------------   90 (204)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCC--CcEEEEEe
Q psy16959        262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDL--KPFVIFVA  339 (366)
Q Consensus       262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~--~p~vi~~~  339 (366)
                                                           +..+.+..+++.|+.|++++.+.+...++....  .+++||+.
T Consensus        91 -------------------------------------~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~  133 (204)
T 2qor_A           91 -------------------------------------TLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVK  133 (204)
T ss_dssp             -------------------------------------EEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEE
T ss_pred             -------------------------------------CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEc
Confidence                                                 456678889999999999999988776664322  46899999


Q ss_pred             CCCHHHHHHHHHhcCC
Q psy16959        340 PPPFELLKQKRIRRGD  355 (366)
Q Consensus       340 ~~~~~~l~~~~~~r~~  355 (366)
                      +++.+.|.+|+..|+.
T Consensus       134 ~~s~e~l~~Rl~~R~~  149 (204)
T 2qor_A          134 PPSIDILLGRLKNRNT  149 (204)
T ss_dssp             CSCHHHHHHHHHTCTT
T ss_pred             CCCHHHHHHHHHHcCC
Confidence            8999999999999985

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=99.81  E-value=4e-22  Score=193.27  Aligned_cols=194  Identities=14%  Similarity=0.102  Sum_probs=138.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCc---------ceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEE
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRF---------AAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHG  173 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~---------~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~  173 (366)
                      ++++|+|+||||||||+|+..|++..+..         ....+.+|++|+..|..+++||+++..++...+..+.|.+..
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a   85 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRA   85 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHH
Confidence            34688999999999999999999865422         334567899999999999999999988877666666776654


Q ss_pred             EEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---C
Q psy16959        174 EYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---Y  250 (366)
Q Consensus       174 ~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~  250 (366)
                              ...+.+++.+|..+|                                       ++||+|||++++.+   .
T Consensus        86 --------~~~i~~i~~~g~~~I---------------------------------------lvGGt~ly~~~l~~~l~~  118 (340)
T 3d3q_A           86 --------EKYIKDITRRGKVPI---------------------------------------IAGGTGLYIQSLLYNYAF  118 (340)
T ss_dssp             --------HHHHHHHHHTTCEEE---------------------------------------EECCCHHHHHHHHBCSCC
T ss_pred             --------HHHHHHHHhCCCcEE---------------------------------------EECChhhhHHHHHhcccc
Confidence                    444556667899999                                       89999999999943   3


Q ss_pred             CCC-CCCC----cchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhh
Q psy16959        251 DPE-DDMY----IPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLK  324 (366)
Q Consensus       251 ~p~-~d~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~  324 (366)
                      .|. .|..    ++.+          +.. + ...+.....+.+...|| ++..|+++|.+|++||+|||..+|.|.+..
T Consensus       119 ~~~~~d~~~~~Rlrrr----------l~r-~-~~~G~~~l~~~L~~vdP~~a~~I~p~d~~Ri~RALEv~~~tG~~~s~~  186 (340)
T 3d3q_A          119 EDESISEDKMKQVKLK----------LKE-L-EHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSR  186 (340)
T ss_dssp             C---CCHHHHHHHHHH----------HHT-T-SSSCHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHHHHHHHCSCSHHH
T ss_pred             cCCCCChHHHHHHHHH----------HHH-H-HhcCHHHHHHHHHhhCcHHHhhcCccCchhhhhHHHHHHHhCCChHHH
Confidence            344 4443    3322          111 1 22222344444555566 777799999999999999999999995542


Q ss_pred             -cc-c-cCCCCcEEEEEeCCCHHHHHHHHHhcCCC
Q psy16959        325 -IL-R-SSDLKPFVIFVAPPPFELLKQKRIRRGDN  356 (366)
Q Consensus       325 -~l-~-~~~~~p~vi~~~~~~~~~l~~~~~~r~~~  356 (366)
                       .. . ... |.+++|+..++|+.|++||++|-|.
T Consensus       187 ~~~~~~~~~-~~~~~~~L~~~r~~L~~RI~~Rvd~  220 (340)
T 3d3q_A          187 KKVQQFTEN-YDTLLIGIEMSRETLYLRINKRVDI  220 (340)
T ss_dssp             HHHHHHSBC-SEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred             hhhccCCCC-CceEEEEeCCCHHHHHHHHHHHHHH
Confidence             11 1 123 5556665557899999999999654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.79  E-value=1.7e-19  Score=159.39  Aligned_cols=131  Identities=37%  Similarity=0.743  Sum_probs=113.3

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYY  180 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~Y  180 (366)
                      ..+++++|+||||||||||++.|... +..+..++++|||+|+.+|.+|.+|+|++..+|..++..+.|++++++.+++|
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~y   82 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMY   82 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCccc
Confidence            45679999999999999999999875 33577889999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcch
Q psy16959        181 GLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPC  260 (366)
Q Consensus       181 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~  260 (366)
                      |                                                                               
T Consensus        83 g-------------------------------------------------------------------------------   83 (180)
T 1kgd_A           83 G-------------------------------------------------------------------------------   83 (180)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            9                                                                               


Q ss_pred             hhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeC
Q psy16959        261 KELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAP  340 (366)
Q Consensus       261 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~  340 (366)
                                                            +..+.+.+++++|++|++++++.++..++.....+++||+.+
T Consensus        84 --------------------------------------~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~  125 (180)
T 1kgd_A           84 --------------------------------------TKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAA  125 (180)
T ss_dssp             --------------------------------------EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEEC
T ss_pred             --------------------------------------ccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEEC
Confidence                                                  566778999999999999999999888876555789999999


Q ss_pred             CCHHHHHHH
Q psy16959        341 PPFELLKQK  349 (366)
Q Consensus       341 ~~~~~l~~~  349 (366)
                      ++.+.|++|
T Consensus       126 p~~~~l~~R  134 (180)
T 1kgd_A          126 PTITPGLNE  134 (180)
T ss_dssp             CSCCTTSCC
T ss_pred             CCHHHHHhh
Confidence            888777653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.71  E-value=5.9e-17  Score=148.14  Aligned_cols=136  Identities=29%  Similarity=0.460  Sum_probs=117.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc-cC-CcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED-SD-RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYY  180 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~-~~-~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~Y  180 (366)
                      ...+++|+||+|||||||++.|+.. +. .+..++++|||+|+.+|.+++.|+|.+...|..+...|.|+++.++.+++|
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y   94 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   94 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence            4678999999999999999999875 32 467789999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcch
Q psy16959        181 GLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPC  260 (366)
Q Consensus       181 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~  260 (366)
                      |                                                                               
T Consensus        95 g-------------------------------------------------------------------------------   95 (219)
T 1s96_A           95 G-------------------------------------------------------------------------------   95 (219)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            9                                                                               


Q ss_pred             hhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeC
Q psy16959        261 KELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAP  340 (366)
Q Consensus       261 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~  340 (366)
                                                            ++.+.++++++.|++|+||+++.+...+...-..+..||+.+
T Consensus        96 --------------------------------------~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~t  137 (219)
T 1s96_A           96 --------------------------------------TSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILP  137 (219)
T ss_dssp             --------------------------------------EEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEEC
T ss_pred             --------------------------------------CCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEEC
Confidence                                                  445567778888999999999988876664312578899999


Q ss_pred             CCHHHHHHHHHhcCC
Q psy16959        341 PPFELLKQKRIRRGD  355 (366)
Q Consensus       341 ~~~~~l~~~~~~r~~  355 (366)
                      .+.+.|.+|+..||.
T Consensus       138 h~~~~l~~Rl~~rG~  152 (219)
T 1s96_A          138 PSKIELDRRLRGRGQ  152 (219)
T ss_dssp             SSHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHcCC
Confidence            999999999998983

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.70  E-value=2.2e-16  Score=141.59  Aligned_cols=135  Identities=40%  Similarity=0.746  Sum_probs=119.7

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL  182 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~  182 (366)
                      +++++|+||+|+|||||++.|... +..++.++++|||+|+.++++|.+|++++..+|...+..+.|++++++.++.|| 
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g-   82 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG-   82 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC-
Confidence            578999999999999999999875 557888999999999999999999999999999999999999999999999999 


Q ss_pred             hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959        183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE  262 (366)
Q Consensus       183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~  262 (366)
                                                                                                      
T Consensus        83 --------------------------------------------------------------------------------   82 (198)
T 1lvg_A           83 --------------------------------------------------------------------------------   82 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCC
Q psy16959        263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP  342 (366)
Q Consensus       263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~  342 (366)
                                                          ++.+.++++++.+++|+++..+.+........+.|.++|+.+++
T Consensus        83 ------------------------------------~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~  126 (198)
T 1lvg_A           83 ------------------------------------TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPS  126 (198)
T ss_dssp             ------------------------------------EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSC
T ss_pred             ------------------------------------CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCC
Confidence                                                56678888999999999999888776655445678889999999


Q ss_pred             HHHHHHHHHhcCC
Q psy16959        343 FELLKQKRIRRGD  355 (366)
Q Consensus       343 ~~~l~~~~~~r~~  355 (366)
                      ...|.++...|+.
T Consensus       127 ~~ilde~~~~~d~  139 (198)
T 1lvg_A          127 LDVLEQRLRLRNT  139 (198)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999988865

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.65  E-value=1.3e-17  Score=161.32  Aligned_cols=100  Identities=12%  Similarity=0.128  Sum_probs=87.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCC---------cceeeeccCCCCCCCCCCCcceeecCHHHH-HHHHHhcceeEE
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDR---------FAAAIPHTSRPMKDGEVDGQDYHFITRAQF-ELDILARKFIEH  172 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~---------~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef-~~~~~~g~fle~  172 (366)
                      ++++|+|+||||||||+|+..|++..+.         +...++.+|++|+.+|..|++|||++..++ .+.++.+.|.+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~  118 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL  118 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence            3457999999999999999999987652         334567889999999999999999999999 788899999888


Q ss_pred             EEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC
Q psy16959        173 GEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD  249 (366)
Q Consensus       173 ~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~  249 (366)
                      +        ...+.++.++|+.||                                       ++||+|+|+++++.
T Consensus       119 a--------~~~i~~i~~~g~~pI---------------------------------------lvGGtglYi~all~  148 (339)
T 3a8t_A          119 A--------GKAVSEITGRRKLPV---------------------------------------LVGGSNSFIHALLV  148 (339)
T ss_dssp             H--------HHHHHHHHHTTCEEE---------------------------------------EECCCHHHHHHHHB
T ss_pred             H--------HHHHHHHHhcCCeEE---------------------------------------EEcCHHHHHHHHHh
Confidence            7        677778888999999                                       99999999999964

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.58  E-value=2.1e-14  Score=127.85  Aligned_cols=136  Identities=26%  Similarity=0.500  Sum_probs=119.3

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccch
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLR  183 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~  183 (366)
                      +.+++|+||+|||||||++.|+...+.+......+|++++.++..++.|+|.+...|..+...+.|+++..+.++.||  
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   84 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYG--   84 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE--
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeeccccc--
Confidence            568999999999999999999876446667778889999999999999999999999999999999999999999999  


Q ss_pred             hhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhh
Q psy16959        184 TKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKEL  263 (366)
Q Consensus       184 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~  263 (366)
                                                                                                      
T Consensus        85 --------------------------------------------------------------------------------   84 (205)
T 3tr0_A           85 --------------------------------------------------------------------------------   84 (205)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCH
Q psy16959        264 GMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPF  343 (366)
Q Consensus       264 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~  343 (366)
                                                         +..+.+.+++.+++++++++.+.+...+......+.+||+.+++.
T Consensus        85 -----------------------------------~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (205)
T 3tr0_A           85 -----------------------------------TEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSI  129 (205)
T ss_dssp             -----------------------------------EEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCH
T ss_pred             -----------------------------------chHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCH
Confidence                                               566788899999999999999888766665445678899999999


Q ss_pred             HHHHHHHHhcCCC
Q psy16959        344 ELLKQKRIRRGDN  356 (366)
Q Consensus       344 ~~l~~~~~~r~~~  356 (366)
                      +.+.+|+.+|+..
T Consensus       130 e~l~~Rl~~R~~~  142 (205)
T 3tr0_A          130 EALRERLIKRRQD  142 (205)
T ss_dssp             HHHHHHHHTCTTS
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999999764

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=99.57  E-value=3.5e-15  Score=142.43  Aligned_cols=56  Identities=25%  Similarity=0.421  Sum_probs=51.2

Q ss_pred             CChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcC
Q psy16959        299 TSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG  354 (366)
Q Consensus       299 i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~  354 (366)
                      |+.++|++++++|++|+|+++++++++++...++|++|||.|+|.++|++|+.+++
T Consensus       186 is~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~  241 (308)
T 3kfv_A          186 IKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLA  241 (308)
T ss_dssp             CCHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHS
T ss_pred             ecHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCC
Confidence            67899999999999999999999999999888999999999999999999755444

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.55  E-value=9.9e-15  Score=133.32  Aligned_cols=136  Identities=24%  Similarity=0.394  Sum_probs=105.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHH-hccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG  181 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~-~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG  181 (366)
                      .+.+++|+||+|||||||++.|+ .....+...++++|++|+.++.+|.+|++++...|..+...+.|+++..+.++.||
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYG  105 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccCC
Confidence            45789999999999999999999 76445778889999999999999999999999999999999999999999999999


Q ss_pred             chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959        182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK  261 (366)
Q Consensus       182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~  261 (366)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (231)
T 3lnc_A          106 --------------------------------------------------------------------------------  105 (231)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCC-CCcEEEEEeC
Q psy16959        262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSD-LKPFVIFVAP  340 (366)
Q Consensus       262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~-~~p~vi~~~~  340 (366)
                                                           +....+.++++++++|++++.+.+...++..- ..+.+||+.+
T Consensus       106 -------------------------------------~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~  148 (231)
T 3lnc_A          106 -------------------------------------VPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMP  148 (231)
T ss_dssp             -------------------------------------EECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEEC
T ss_pred             -------------------------------------CCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEEC
Confidence                                                 34456778889999999999887776555331 2457889999


Q ss_pred             CCHHHHHHHHHhcCC
Q psy16959        341 PPFELLKQKRIRRGD  355 (366)
Q Consensus       341 ~~~~~l~~~~~~r~~  355 (366)
                      ++.+.|.+|+..|+.
T Consensus       149 ~~~~~l~~Rl~~R~~  163 (231)
T 3lnc_A          149 PSMEELRRRLCGRRA  163 (231)
T ss_dssp             SCHHHHHHC------
T ss_pred             CcHHHHHHHHHHcCC
Confidence            999999999998843

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.42  E-value=1.2e-12  Score=116.38  Aligned_cols=136  Identities=36%  Similarity=0.653  Sum_probs=99.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc-CCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG  181 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~-~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG  181 (366)
                      .+.+++|+||+||||||++..|+... +.....+.+++++|..++.++..|.|.+...|..+...+.++++..+.++.||
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   84 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG   84 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence            35689999999999999999998763 34444667889998888888999999999999999999999999999888898


Q ss_pred             chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959        182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK  261 (366)
Q Consensus       182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~  261 (366)
                                                                                                      
T Consensus        85 --------------------------------------------------------------------------------   84 (207)
T 2j41_A           85 --------------------------------------------------------------------------------   84 (207)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959        262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP  341 (366)
Q Consensus       262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~  341 (366)
                                                           ...+.++.++++++.+++++.+.....++..-..++++++.++
T Consensus        85 -------------------------------------~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~  127 (207)
T 2j41_A           85 -------------------------------------TPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPP  127 (207)
T ss_dssp             -------------------------------------EEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECC
T ss_pred             -------------------------------------CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECC
Confidence                                                 3455677788889999999887665555432124678888888


Q ss_pred             CHHHHHHHHHhcCC
Q psy16959        342 PFELLKQKRIRRGD  355 (366)
Q Consensus       342 ~~~~l~~~~~~r~~  355 (366)
                      +.+.+.+|+..|++
T Consensus       128 ~~~~~~~Rl~~R~~  141 (207)
T 2j41_A          128 SLEHLRERLVGRGT  141 (207)
T ss_dssp             C-------------
T ss_pred             CHHHHHHHHHhcCC
Confidence            88999999988874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.39  E-value=5.7e-12  Score=114.50  Aligned_cols=137  Identities=26%  Similarity=0.566  Sum_probs=114.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG  181 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG  181 (366)
                      .+.+++|+||+|+|||||++.|+.. |..+.+..+++|++++.++.+++.|.|.+...|..+...+.|+++.++.++.||
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g  101 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYG  101 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCC
Confidence            4679999999999999999999865 434445678889999888999999999999999999889999999999888888


Q ss_pred             chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959        182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK  261 (366)
Q Consensus       182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~  261 (366)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (218)
T 1z6g_A          102 --------------------------------------------------------------------------------  101 (218)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCC--CCcEEEEEe
Q psy16959        262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSD--LKPFVIFVA  339 (366)
Q Consensus       262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~--~~p~vi~~~  339 (366)
                                                           .....+.++++++++++++.++++.++.+..-  ..|..+|+.
T Consensus       102 -------------------------------------~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~  144 (218)
T 1z6g_A          102 -------------------------------------TLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIK  144 (218)
T ss_dssp             -------------------------------------EEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEE
T ss_pred             -------------------------------------CcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEe
Confidence                                                 33456788888999999999998877666432  356889999


Q ss_pred             CCCHHHHHHHHHhcCCC
Q psy16959        340 PPPFELLKQKRIRRGDN  356 (366)
Q Consensus       340 ~~~~~~l~~~~~~r~~~  356 (366)
                      +++...|.++...|...
T Consensus       145 ~~~~~~Lde~~~~~d~~  161 (218)
T 1z6g_A          145 PPSTDVLLSRLLTRNTE  161 (218)
T ss_dssp             CSCHHHHHHHHHHTCCC
T ss_pred             CcCHHHHHHHHHhcCCC
Confidence            99999999998888654

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=99.37  E-value=1.1e-13  Score=132.95  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=51.1

Q ss_pred             ChHHHHHHHHcCCeEEEcccch-hhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCC
Q psy16959        300 SLDAIRTVVNAGKICVLNLHPQ-SLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD  355 (366)
Q Consensus       300 ~~~~i~~vir~~k~~~l~~~p~-~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~  355 (366)
                      .++.+..+.++|++|+|+++++ ++.+++.....|++|||.|+|.++|++|+..||.
T Consensus       218 eVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt  274 (337)
T 4dey_A          218 EIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGK  274 (337)
T ss_dssp             HHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCc
Confidence            4667777888999999999998 9999998888999999999999999999999986

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.19  E-value=3.4e-11  Score=95.28  Aligned_cols=61  Identities=31%  Similarity=0.381  Sum_probs=55.1

Q ss_pred             CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE
Q psy16959          1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQE   61 (366)
Q Consensus         1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v   61 (366)
                      |++|..+ .+.+||+++.+||+|+++|.|++||.|++|||+++.+++|++++++|+..+...
T Consensus        19 G~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~   80 (95)
T 3gge_A           19 GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEE   80 (95)
T ss_dssp             CEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTC
T ss_pred             eEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCC
Confidence            7888753 467899999999999999999999999999999999999999999999976633

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.19  E-value=1.3e-10  Score=123.31  Aligned_cols=56  Identities=21%  Similarity=0.356  Sum_probs=52.0

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .|++|..|.+||+|+++|.|+.||+|++|||.++.+.++.++..+++.....+.+.
T Consensus       184 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~  239 (721)
T 2xkx_A          184 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLK  239 (721)
T ss_pred             CceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCCCeEEEE
Confidence            58999999999999999999999999999999999999999999998877777665

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.03  E-value=3.5e-10  Score=87.25  Aligned_cols=52  Identities=29%  Similarity=0.308  Sum_probs=48.7

Q ss_pred             EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +|.++.+||||+++| |+.||+|++|||+++.+++|++++.+|+.+.++++|.
T Consensus        26 ~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~   77 (82)
T 1r6j_A           26 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT   77 (82)
T ss_dssp             EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEE
Confidence            478999999999999 9999999999999999999999999999878888775

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.99  E-value=1.8e-09  Score=84.09  Aligned_cols=57  Identities=30%  Similarity=0.426  Sum_probs=54.2

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEee
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG   65 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~~   65 (366)
                      ++++|..|.+||||+++|.|+.||+|++|||.++.+++++++..+|+++.+++++..
T Consensus        21 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v   77 (88)
T 3e17_A           21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV   77 (88)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            479999999999999999999999999999999999999999999999999998874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.99  E-value=5.5e-09  Score=93.55  Aligned_cols=81  Identities=31%  Similarity=0.494  Sum_probs=65.6

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEec--c
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEK--S  178 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g--~  178 (366)
                      .....+++|+||+|||||||++.|+..........++++++|+.++..++.|.|.+...|..+...+.|.++.++.+  .
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~   96 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLH   96 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchh
Confidence            34567899999999999999999986533344556788888887888899999999999988888888888887776  6


Q ss_pred             ccc
Q psy16959        179 YYG  181 (366)
Q Consensus       179 ~YG  181 (366)
                      .||
T Consensus        97 ~~g   99 (207)
T 1znw_A           97 RSG   99 (207)
T ss_dssp             EEE
T ss_pred             hcC
Confidence            677

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.97  E-value=1.5e-09  Score=85.01  Aligned_cols=64  Identities=42%  Similarity=0.699  Sum_probs=57.9

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...  ..+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+|+...+.+++.
T Consensus        18 G~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   83 (93)
T 3o46_A           18 GATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFK   83 (93)
T ss_dssp             CEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEE
T ss_pred             cEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            5666655  578999999999999999999999999999999999999999999999988877776

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=1.9e-09  Score=83.93  Aligned_cols=64  Identities=34%  Similarity=0.592  Sum_probs=55.3

Q ss_pred             CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++... .++++|..|.++|||++++.|++||+|++|||.++.+++++++..+|+...+.+++.
T Consensus        16 G~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~   80 (88)
T 1kwa_A           16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK   80 (88)
T ss_dssp             CEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEE
T ss_pred             eEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEE
Confidence            5677653 467999999999999994449999999999999999999999999999988766665

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=98.88  E-value=7.4e-09  Score=80.56  Aligned_cols=63  Identities=21%  Similarity=0.316  Sum_probs=56.4

Q ss_pred             CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....  .+++|..|.++|||+++| |++||.|++|||.++.+++++++..+++...+++.++
T Consensus        17 G~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~   81 (91)
T 1g9o_A           17 GFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL   81 (91)
T ss_dssp             CEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             cEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            56665543  589999999999999999 9999999999999999999999999999988887766

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=98.88  E-value=6.6e-09  Score=83.92  Aligned_cols=64  Identities=22%  Similarity=0.450  Sum_probs=55.8

Q ss_pred             CcEEEEe-----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC---CCcEEEe
Q psy16959          1 GATIRNE-----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL---TGQEMTM   64 (366)
Q Consensus         1 G~~i~~~-----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~---~~~v~l~   64 (366)
                      |+++...     ..+++|..|.++|||+++|.|++||+|++|||+++.++++++++.+|+..   .+.+.|.
T Consensus        20 G~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~   91 (108)
T 3cbz_A           20 GISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLT   91 (108)
T ss_dssp             CEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEE
T ss_pred             CEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEE
Confidence            5566543     46899999999999999999999999999999999999999999999876   4567766

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.86  E-value=6.9e-09  Score=85.40  Aligned_cols=56  Identities=23%  Similarity=0.348  Sum_probs=52.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+...+++++.
T Consensus        53 ~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~  108 (118)
T 3b76_A           53 LPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLK  108 (118)
T ss_dssp             CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            47999999999999999999999999999999999999999999999988887775

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.85  E-value=5.3e-09  Score=84.39  Aligned_cols=64  Identities=17%  Similarity=0.358  Sum_probs=57.7

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++.....+++|..|.+||||+++|.|++||+|++|||.++.+++++++..+++...+++.+.
T Consensus        17 G~~i~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~   80 (106)
T 2la8_A           17 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME   80 (106)
T ss_dssp             CCEEEECSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEE
T ss_pred             CEEEEeCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence            5566555678999999999999999999999999999999999999999999999988888776

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.85  E-value=3.7e-09  Score=84.09  Aligned_cols=64  Identities=31%  Similarity=0.532  Sum_probs=56.5

Q ss_pred             CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++... .++++|..|.++|||+++|.|++||.|++|||.++.+++++++..+|+...+.+.+.
T Consensus        27 G~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~   91 (97)
T 2ejy_A           27 GICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLK   91 (97)
T ss_dssp             SEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEE
T ss_pred             eEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            5677653 468999999999999999999999999999999999999999999999876666664

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.85  E-value=5.9e-09  Score=82.32  Aligned_cols=64  Identities=17%  Similarity=0.353  Sum_probs=56.9

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++.....+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+++...+++.+.
T Consensus        23 G~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~   86 (96)
T 2qkv_A           23 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSME   86 (96)
T ss_dssp             CEEEEECSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             cEEEEeCCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEE
Confidence            4555555578999999999999999989999999999999999999999999999988887776

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=7.8e-09  Score=80.87  Aligned_cols=63  Identities=33%  Similarity=0.650  Sum_probs=56.6

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++.....+++|..|.++|||+++|.|++||+|++|||.++ +.+++++..+|+...+.+.+.
T Consensus        21 G~~i~~~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~   83 (91)
T 2e7k_A           21 GVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILK   83 (91)
T ss_dssp             CEEEEESSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEE
T ss_pred             eEEEEecCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEE
Confidence            667777678999999999999999887999999999999999 999999999999877776665

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.84  E-value=5.9e-09  Score=81.75  Aligned_cols=63  Identities=19%  Similarity=0.311  Sum_probs=55.7

Q ss_pred             CcEEEEeCC--eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGD--AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~--gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++.....  +++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+...+.+.++
T Consensus        19 G~~l~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~   83 (95)
T 3r68_A           19 GFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL   83 (95)
T ss_dssp             SCEEEEC--CCSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred             cEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            566665443  89999999999999999 9999999999999999999999999999988887776

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.82  E-value=2e-10  Score=106.67  Aligned_cols=56  Identities=11%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccCCcceee---------eccCCCCCCCCCCCcceeecCHHHH
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAI---------PHTSRPMKDGEVDGQDYHFITRAQF  160 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~---------~~tTr~pr~~E~~g~~y~~vs~~ef  160 (366)
                      ++++|+||+|||||||+..|++.++...+..         +.+|++|+..|..+++|+|++..++
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~   66 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPL   66 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeecc
Confidence            4689999999999999999998654322222         4568899889999999999886554

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.82  E-value=7.9e-09  Score=90.53  Aligned_cols=56  Identities=25%  Similarity=0.438  Sum_probs=52.9

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.+||||+++|+|++||+|++|||.++.++++++++.+|+++.+.++|+
T Consensus       111 ~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~L~  166 (170)
T 3egg_C          111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFM  166 (170)
T ss_dssp             BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEEE
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            57999999999999999999999999999999999999999999999988887775

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.79  E-value=1.2e-08  Score=84.20  Aligned_cols=56  Identities=21%  Similarity=0.310  Sum_probs=51.9

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.++++++++.+++...+++++.
T Consensus        53 ~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~  108 (120)
T 2iwo_A           53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQ  108 (120)
T ss_dssp             EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            37999999999999999449999999999999999999999999999988887776

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.79  E-value=1.6e-08  Score=84.83  Aligned_cols=54  Identities=26%  Similarity=0.329  Sum_probs=50.9

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +++|..|.++|||+++| |+.||+|++|||.++.++++++++.+|+.....+.+.
T Consensus        66 gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~  119 (132)
T 3l4f_D           66 LQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK  119 (132)
T ss_dssp             SEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            69999999999999999 9999999999999999999999999999977777765

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.78  E-value=1.3e-08  Score=81.80  Aligned_cols=57  Identities=26%  Similarity=0.472  Sum_probs=52.8

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.....+.+.
T Consensus        39 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   95 (107)
T 1wf8_A           39 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFV   95 (107)
T ss_dssp             EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEE
Confidence            358999999999999999999999999999999999999999999999887777776

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.78  E-value=2.2e-08  Score=80.53  Aligned_cols=56  Identities=20%  Similarity=0.388  Sum_probs=52.6

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+++...+.+.+.
T Consensus        32 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~   87 (106)
T 4amh_A           32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLK   87 (106)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence            38999999999999999999999999999999999999999999999988887776

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.78  E-value=2e-08  Score=78.01  Aligned_cols=63  Identities=21%  Similarity=0.342  Sum_probs=55.0

Q ss_pred             CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....  .+++|..|.++|||+++| |++||+|++|||.++.+.+++++..+|+.....+.+.
T Consensus        18 G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   82 (90)
T 2he4_A           18 GFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL   82 (90)
T ss_dssp             CEEEEECSSSSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEE
T ss_pred             cEEEEccCCCCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            55665443  489999999999999999 9999999999999999999999999999876666665

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.78  E-value=1.4e-08  Score=83.07  Aligned_cols=55  Identities=31%  Similarity=0.518  Sum_probs=52.1

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus        50 g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~  104 (117)
T 1ujd_A           50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEIC  104 (117)
T ss_dssp             EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEE
Confidence            7999999999999999999999999999999999999999999999987887776

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.77  E-value=1.6e-08  Score=80.95  Aligned_cols=63  Identities=32%  Similarity=0.521  Sum_probs=55.5

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhccc-CCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRT-GLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~-G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++ | |++||+|++|||.++.+++++++..+++...++++|.
T Consensus        24 G~~l~~g~~~~~~~~V~~V~~~s~A~~a~g-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~   90 (103)
T 2dc2_A           24 GISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE   90 (103)
T ss_dssp             CEEEEEEGGGTEEEEEEEECTTSHHHHHTC-CCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEE
T ss_pred             CEEEEeccCCCCCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            5566543   247999999999999996 6 9999999999999999999999999999988888876

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.77  E-value=2.3e-08  Score=81.98  Aligned_cols=56  Identities=21%  Similarity=0.380  Sum_probs=52.1

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus        54 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~  109 (117)
T 2byg_A           54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLK  109 (117)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            47999999999999999999999999999999999999999999999877777665

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.77  E-value=1.5e-08  Score=78.93  Aligned_cols=64  Identities=34%  Similarity=0.540  Sum_probs=55.8

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...  ..+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+++...+.+.+.
T Consensus        19 G~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   84 (92)
T 2qg1_A           19 GLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLE   84 (92)
T ss_dssp             SEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred             cEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            4556533  358999999999999999999999999999999999999999999999877777665

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.77  E-value=1e-08  Score=82.69  Aligned_cols=57  Identities=23%  Similarity=0.399  Sum_probs=51.4

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC-CcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT-GQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~-~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.++++++++.+|+... +.+.+.
T Consensus        43 ~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~  100 (108)
T 2d92_A           43 RSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLG  100 (108)
T ss_dssp             CEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence            457999999999999999999999999999999999999999999999864 455554

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.77  E-value=1.7e-08  Score=82.09  Aligned_cols=64  Identities=59%  Similarity=0.970  Sum_probs=56.8

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++.....+++|..|.++|||+++|.|++||+|++|||..+.+++++++..+|+...+.+.+.
T Consensus        40 G~~i~~~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~  103 (113)
T 1va8_A           40 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV  103 (113)
T ss_dssp             CEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEE
T ss_pred             eEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            5666666678999999999999999944999999999999999999999999999887777765

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.77  E-value=1.8e-08  Score=82.65  Aligned_cols=56  Identities=29%  Similarity=0.410  Sum_probs=52.5

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++...+++.+.
T Consensus        53 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~  108 (117)
T 2fne_A           53 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLM  108 (117)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            47999999999999999999999999999999999999999999999888887765

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=98.77  E-value=2.2e-08  Score=80.16  Aligned_cols=56  Identities=20%  Similarity=0.389  Sum_probs=52.0

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+.++.++...++.....+.+.
T Consensus        33 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   88 (105)
T 2awx_A           33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLK   88 (105)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999999999999877777665

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.76  E-value=2.5e-08  Score=81.65  Aligned_cols=64  Identities=23%  Similarity=0.459  Sum_probs=56.1

Q ss_pred             CcEEEEe---C-CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---G-DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~-~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   + .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus        30 G~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~   97 (117)
T 1v62_A           30 GISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLE   97 (117)
T ss_dssp             CCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEE
T ss_pred             cEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            5666643   2 35999999999999999999999999999999999999999999999877777776

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.76  E-value=1.6e-08  Score=77.96  Aligned_cols=55  Identities=31%  Similarity=0.488  Sum_probs=50.3

Q ss_pred             CeEEEEEEcCCchhcc-cCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~-~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||++ +| |++||+|++|||.++.+++++++..+++...+.+.+.
T Consensus        28 ~~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   83 (87)
T 4e34_A           28 VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE   83 (87)
T ss_dssp             EEEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred             CCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            4699999999999999 57 9999999999999999999999999999887777664

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.75  E-value=3.3e-08  Score=77.94  Aligned_cols=64  Identities=30%  Similarity=0.444  Sum_probs=56.2

Q ss_pred             CcEEEEeC----CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG----DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~----~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....    .+++|..|.++|||+++|.|++||+|++|||.++.+++++++...++.....+.+.
T Consensus        18 G~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   85 (98)
T 2opg_A           18 GLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLT   85 (98)
T ss_dssp             CEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             cEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            56666443    58999999999999999999999999999999999999999999999877766665

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.75  E-value=3.4e-08  Score=76.14  Aligned_cols=63  Identities=22%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....   .+++|..|.++|||+++| |++||.|++|||.++.+++++++..+|+.....+.+.
T Consensus        15 G~~l~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   80 (87)
T 2pa1_A           15 GFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQ   80 (87)
T ss_dssp             SEEEEEEGGGTEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEE
T ss_pred             CEEEecccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            55665432   489999999999999999 9999999999999999999999999999877676664

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.75  E-value=1.8e-08  Score=81.72  Aligned_cols=57  Identities=25%  Similarity=0.424  Sum_probs=53.0

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.....+.+.
T Consensus        34 ~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   90 (113)
T 2g5m_B           34 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFM   90 (113)
T ss_dssp             CEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEEE
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEE
Confidence            458999999999999999999999999999999999999999999999887777776

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=98.75  E-value=2.7e-08  Score=78.24  Aligned_cols=64  Identities=30%  Similarity=0.495  Sum_probs=55.3

Q ss_pred             CcEEEEe-------CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE-------GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~-------~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...       ..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus        17 G~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   87 (97)
T 2jil_A           17 GFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALL   87 (97)
T ss_dssp             SEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEE
T ss_pred             CEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            5566543       358999999999999999989999999999999999999999999999866666655

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.75  E-value=2.7e-08  Score=79.75  Aligned_cols=57  Identities=28%  Similarity=0.405  Sum_probs=52.6

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus        37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   93 (106)
T 3axa_A           37 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLE   93 (106)
T ss_dssp             SEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            358999999999999999999999999999999999999999999998877777776

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.75  E-value=2.3e-08  Score=78.87  Aligned_cols=64  Identities=36%  Similarity=0.562  Sum_probs=55.3

Q ss_pred             CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....   .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus        19 G~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~   85 (97)
T 1n7e_A           19 GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK   85 (97)
T ss_dssp             CEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             CEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            56665433   68999999999999999989999999999999999999999999999666666665

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.75  E-value=2.9e-08  Score=77.08  Aligned_cols=64  Identities=23%  Similarity=0.361  Sum_probs=54.7

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++...++.....+.+.
T Consensus        19 G~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~   85 (90)
T 1qav_A           19 GISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLE   85 (90)
T ss_dssp             CEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             CEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            5566543   357999999999999999339999999999999999999999999999877776664

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.74  E-value=2.7e-08  Score=79.23  Aligned_cols=64  Identities=27%  Similarity=0.448  Sum_probs=56.3

Q ss_pred             CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....  .+++|..|.++|||+++|.|++||+|++|||.++.+.++.++...++.....+.+.
T Consensus        25 G~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   90 (104)
T 3i4w_A           25 GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII   90 (104)
T ss_dssp             SEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE
T ss_pred             CEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            55665433  38999999999999999999999999999999999999999999999877777765

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.74  E-value=1.1e-08  Score=85.32  Aligned_cols=64  Identities=20%  Similarity=0.447  Sum_probs=54.6

Q ss_pred             CcEEEEe------CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc-EEEe
Q psy16959          1 GATIRNE------GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTM   64 (366)
Q Consensus         1 G~~i~~~------~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~-v~l~   64 (366)
                      |++|...      ..+++|..|.+||||+++|.|++||+|++|||+++.++++++++.+|+...+. +.+.
T Consensus        43 G~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~  113 (130)
T 1i16_A           43 GFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIV  113 (130)
T ss_dssp             TEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEE
T ss_pred             CEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEE
Confidence            5666532      24799999999999999955999999999999999999999999999998776 5554

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.74  E-value=2.5e-08  Score=83.01  Aligned_cols=56  Identities=41%  Similarity=0.722  Sum_probs=52.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+|+...+.+.+.
T Consensus        65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~  120 (128)
T 1nf3_C           65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT  120 (128)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTSEEEE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            47999999999999999988999999999999999999999999999888887775

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.73  E-value=3.8e-08  Score=77.17  Aligned_cols=64  Identities=22%  Similarity=0.376  Sum_probs=55.8

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...  ..+++|..|.++|||+++|.|++||+|++|||.++.+.++.++...++.....+.+.
T Consensus        19 G~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   84 (95)
T 2vwr_A           19 GIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLT   84 (95)
T ss_dssp             CEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred             cEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            4566432  358999999999999999999999999999999999999999999998877777665

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.73  E-value=3.5e-08  Score=79.51  Aligned_cols=54  Identities=26%  Similarity=0.329  Sum_probs=49.9

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +++|..|.++|||+++| |+.||+|++|||.++.+++++++..+++.....+.+.
T Consensus        46 gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~   99 (109)
T 1q3o_A           46 LQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK   99 (109)
T ss_dssp             SEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEE
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence            79999999999999999 9999999999999999999999999999876666654

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.73  E-value=1.3e-08  Score=84.63  Aligned_cols=56  Identities=25%  Similarity=0.401  Sum_probs=51.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC-------CCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-------TGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~-------~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||+++.++++++++.+|+.+       .+.++|.
T Consensus        55 ~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~  117 (127)
T 1wg6_A           55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLV  117 (127)
T ss_dssp             EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEE
Confidence            4799999999999999999999999999999999999999999999875       5667665

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.72  E-value=3.9e-08  Score=78.16  Aligned_cols=57  Identities=16%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++...++.....+.+.
T Consensus        33 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   89 (102)
T 2i1n_A           33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLV   89 (102)
T ss_dssp             CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEE
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            358999999999999999999999999999999999999999999999877777665

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.72  E-value=1.6e-08  Score=81.88  Aligned_cols=58  Identities=28%  Similarity=0.408  Sum_probs=51.7

Q ss_pred             CcEEEEe-----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC
Q psy16959          1 GATIRNE-----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT   58 (366)
Q Consensus         1 G~~i~~~-----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~   58 (366)
                      |+++...     ..+++|..|.++|||+++|.|++||+|++|||+++.++++++++.+|+.+.
T Consensus        28 G~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~   90 (109)
T 1wi4_A           28 GLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK   90 (109)
T ss_dssp             CEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred             CEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccc
Confidence            5666531     237999999999999999999999999999999999999999999999876

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.72  E-value=3.7e-08  Score=78.37  Aligned_cols=64  Identities=22%  Similarity=0.379  Sum_probs=53.7

Q ss_pred             CcEEEEeCC-----eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959          1 GATIRNEGD-----AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~-----gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~   64 (366)
                      |+++...+.     +++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+|+.  ....+.+.
T Consensus        24 G~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~   94 (101)
T 2yt7_A           24 GVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLS   94 (101)
T ss_dssp             CEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEE
T ss_pred             CEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence            566754333     59999999999999966699999999999999999999999999988  44555554

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=98.72  E-value=4e-08  Score=77.92  Aligned_cols=56  Identities=25%  Similarity=0.362  Sum_probs=51.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++.....+.+.
T Consensus        37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   92 (101)
T 2jik_A           37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLR   92 (101)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            58999999999999999989999999999999999999999999998876666665

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.71  E-value=4.3e-08  Score=77.34  Aligned_cols=63  Identities=21%  Similarity=0.322  Sum_probs=54.1

Q ss_pred             CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....  .+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+...+....+
T Consensus        23 G~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l   87 (98)
T 2jxo_A           23 GFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLL   87 (98)
T ss_dssp             CEEEECCCSSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred             cEEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            45565433  489999999999999999 9999999999999999999999999999887665533

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=98.71  E-value=3.9e-08  Score=77.18  Aligned_cols=56  Identities=23%  Similarity=0.449  Sum_probs=51.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus        33 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~   88 (96)
T 1d5g_A           33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLL   88 (96)
T ss_dssp             SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            58999999999999999989999999999999999999999999999876666665

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.71  E-value=5.5e-08  Score=74.55  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=52.9

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEE
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMT   63 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l   63 (366)
                      |+++...   ..+++|..|.++|||+++|.|++||.|++|||.++.+++++++..+|+..  ...+.+
T Consensus        14 G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   81 (85)
T 2i04_A           14 GFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDL   81 (85)
T ss_dssp             SEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEE
T ss_pred             CEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence            4555542   23599999999999999998999999999999999999999999999886  344544

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.71  E-value=5e-08  Score=77.58  Aligned_cols=56  Identities=21%  Similarity=0.429  Sum_probs=51.1

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+...+.+.+.
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   94 (103)
T 2fcf_A           39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM   94 (103)
T ss_dssp             --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEE
T ss_pred             CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            57999999999999999989999999999999999999999999999887777765

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=98.71  E-value=4.5e-08  Score=76.91  Aligned_cols=63  Identities=19%  Similarity=0.273  Sum_probs=54.2

Q ss_pred             CcEEEEeC-----CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG-----DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~-----~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....     .+++|..|.++|||+++| |++||+|++|||.++.+++++++..+++.....+.+.
T Consensus        17 G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   84 (96)
T 2v90_A           17 GFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLT   84 (96)
T ss_dssp             CEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred             cEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            56665432     279999999999999999 9999999999999999999999999999875666655

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.70  E-value=4.5e-08  Score=80.89  Aligned_cols=56  Identities=25%  Similarity=0.370  Sum_probs=52.6

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.+||||+++|.|+.||+|++|||.++.+++++++..+++...+.+++.
T Consensus        45 ~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~  100 (125)
T 3hpk_A           45 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH  100 (125)
T ss_dssp             SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            46899999999999999999999999999999999999999999999988887766

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.70  E-value=5.4e-08  Score=76.01  Aligned_cols=56  Identities=18%  Similarity=0.370  Sum_probs=51.5

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++...+.+.+.
T Consensus        33 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   88 (94)
T 2fe5_A           33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK   88 (94)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999989999999999999999999999999999877766664

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.69  E-value=4.1e-08  Score=78.85  Aligned_cols=57  Identities=19%  Similarity=0.348  Sum_probs=52.1

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.++++.+++.+++...+.+.+.
T Consensus        40 ~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~v~l~   96 (107)
T 1uhp_A           40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQ   96 (107)
T ss_dssp             SCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEE
T ss_pred             CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            458999999999999999339999999999999999999999999999888888776

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.69  E-value=5e-08  Score=75.53  Aligned_cols=63  Identities=17%  Similarity=0.217  Sum_probs=54.0

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++.....+.+.
T Consensus        16 G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   81 (89)
T 2q3g_A           16 GFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLG   81 (89)
T ss_dssp             CEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEE
T ss_pred             cEEEECcCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence            5566532   3579999999999999999 9999999999999999999999999998876666554

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=4.1e-08  Score=76.57  Aligned_cols=64  Identities=30%  Similarity=0.605  Sum_probs=55.0

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++..   ...+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++...+.+.+.
T Consensus        19 G~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   85 (93)
T 2dkr_A           19 GFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLV   85 (93)
T ss_dssp             CEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEE
T ss_pred             cEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            456653   2468999999999999999559999999999999999999999999999877776665

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.68  E-value=7.3e-08  Score=76.87  Aligned_cols=63  Identities=29%  Similarity=0.318  Sum_probs=56.6

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc---CCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG---LTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~---~~~~v~l~   64 (366)
                      |+.+...+.+.+|..|.+||||+++| |++||.|++|||..+...+.+++...++.   ..+.+.|+
T Consensus        31 G~~l~~~~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LL   96 (101)
T 3qik_A           31 GFDIEEKNKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLL   96 (101)
T ss_dssp             SEEEEEETTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEccCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEE
Confidence            56777777889999999999999999 99999999999999988999999999986   47777776

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.68  E-value=7.8e-08  Score=78.02  Aligned_cols=64  Identities=27%  Similarity=0.371  Sum_probs=55.7

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++.....+.+.
T Consensus        38 G~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~  104 (112)
T 2r4h_A           38 GFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLF  104 (112)
T ss_dssp             SEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred             CEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            5666543   458999999999999999989999999999999999999999999998876766665

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.68  E-value=6.3e-08  Score=76.18  Aligned_cols=55  Identities=25%  Similarity=0.338  Sum_probs=50.7

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+...+.+.+.
T Consensus        37 ~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   91 (96)
T 2ego_A           37 MVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLE   91 (96)
T ss_dssp             EEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEE
T ss_pred             CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            378999999999999999 9999999999999999999999999999887766664

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.67  E-value=6.6e-08  Score=78.03  Aligned_cols=64  Identities=28%  Similarity=0.503  Sum_probs=54.7

Q ss_pred             CcEEEEeC------CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          1 GATIRNEG------DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~------~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      |+++....      .+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+|+..  ...+.+.
T Consensus        25 G~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~   96 (111)
T 2koj_A           25 GFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLL   96 (111)
T ss_dssp             CEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEE
T ss_pred             CEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence            56666443      5799999999999999998999999999999999999999999999875  4555554

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.67  E-value=3.2e-08  Score=76.75  Aligned_cols=64  Identities=28%  Similarity=0.510  Sum_probs=54.3

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC--cEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG--QEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~--~v~l~   64 (366)
                      |+++...   +.+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+++....  .+.+.
T Consensus        16 G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~   84 (90)
T 2q9v_A           16 GFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLT   84 (90)
T ss_dssp             CEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEE
T ss_pred             CEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence            5566532   2579999999999999999999999999999999999999999999987643  56654

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.67  E-value=2.2e-08  Score=79.96  Aligned_cols=64  Identities=36%  Similarity=0.609  Sum_probs=54.7

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      |+++..   ...+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+..  ...+.+.
T Consensus        23 G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~   91 (103)
T 1uep_A           23 GFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLT   91 (103)
T ss_dssp             CEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEE
T ss_pred             CEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEE
Confidence            455543   235799999999999999999999999999999999999999999999886  4666665

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.67  E-value=5e-08  Score=79.62  Aligned_cols=56  Identities=20%  Similarity=0.405  Sum_probs=52.6

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.++++++++.+++.....+.+.
T Consensus        50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~  105 (117)
T 2ehr_A           50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFI  105 (117)
T ss_dssp             CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEEE
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999989999999999999999999999999999887787776

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=98.67  E-value=5.3e-08  Score=75.85  Aligned_cols=62  Identities=24%  Similarity=0.291  Sum_probs=53.4

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++.. ..+++|..|.++|||+++| |+.||.|++|||.++.+++++++..+++...+.+.+.
T Consensus        17 G~~l~~-~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~   78 (91)
T 2f5y_A           17 GFTICC-DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL   78 (91)
T ss_dssp             SEEEEC-SSSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             cEEEec-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            444543 3568999999999999999 9999999999999999999999999998877766665

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.66  E-value=6.8e-08  Score=80.76  Aligned_cols=55  Identities=35%  Similarity=0.522  Sum_probs=50.8

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      ++||..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.+.  ..+.+.
T Consensus        66 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~  122 (131)
T 1wfg_A           66 CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELV  122 (131)
T ss_dssp             EEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEE
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE
Confidence            8999999999999999999999999999999999999999999998874  566665

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.66  E-value=5e-08  Score=77.95  Aligned_cols=55  Identities=20%  Similarity=0.300  Sum_probs=50.9

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+...+.+.+.
T Consensus        48 ~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~  102 (104)
T 2z17_A           48 MFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIE  102 (104)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHHTTTEEEEE
T ss_pred             CCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEE
Confidence            589999999999999999 9999999999999999999999999999887766653

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.66  E-value=9.2e-08  Score=74.27  Aligned_cols=63  Identities=19%  Similarity=0.289  Sum_probs=53.9

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...  ..+++|..|.++|||+++| |++||+|++|||..+.+.++.++..+++.....+.+.
T Consensus        22 G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   86 (91)
T 1m5z_A           22 GFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV   86 (91)
T ss_dssp             SEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEE
T ss_pred             cEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            4556543  3589999999999999999 9999999999999999999999999998766666654

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.65  E-value=9.1e-08  Score=74.37  Aligned_cols=63  Identities=21%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++..+++.....+.+.
T Consensus        16 G~~l~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   81 (91)
T 2pkt_A           16 GFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLT   81 (91)
T ss_dssp             SEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             CEEEEccCCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            4556543   2489999999999999999 9999999999999999999999999999855666654

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.65  E-value=9.6e-08  Score=73.68  Aligned_cols=63  Identities=22%  Similarity=0.363  Sum_probs=53.7

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++| |++||+|++|||.++.+.+++++..+++.....+.+.
T Consensus        16 G~~l~~g~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   81 (88)
T 2uzc_A           16 GFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMT   81 (88)
T ss_dssp             CEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             cEEEECcCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            4556532   3479999999999999999 9999999999999999999999999998876666554

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.65  E-value=6.9e-08  Score=77.82  Aligned_cols=57  Identities=23%  Similarity=0.308  Sum_probs=52.4

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++...++.....+.+.
T Consensus        35 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   91 (110)
T 1um1_A           35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFL   91 (110)
T ss_dssp             CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEE
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            358999999999999999999999999999999999999999999999877777665

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=5.9e-08  Score=79.61  Aligned_cols=57  Identities=25%  Similarity=0.356  Sum_probs=52.2

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus        46 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~  102 (120)
T 2eno_A           46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLR  102 (120)
T ss_dssp             CCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEEE
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            458999999999999999999999999999999999999999999998776676665

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.65  E-value=4.1e-08  Score=78.57  Aligned_cols=56  Identities=27%  Similarity=0.520  Sum_probs=52.2

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~   93 (105)
T 1wha_A           38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALL   93 (105)
T ss_dssp             CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEE
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            58999999999999999999999999999999999999999999999877777765

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.65  E-value=6.7e-08  Score=76.96  Aligned_cols=55  Identities=25%  Similarity=0.357  Sum_probs=49.1

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEE
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMT   63 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l   63 (366)
                      ..+++|..|.++|||+++| |++||+|++|||.++.+.+++++...++...+ .+.+
T Consensus        44 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l   99 (104)
T 3sfj_A           44 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRL   99 (104)
T ss_dssp             CCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEE
T ss_pred             CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEE
Confidence            4579999999999999999 99999999999999999999999999987654 4444

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.64  E-value=6.5e-08  Score=80.32  Aligned_cols=57  Identities=23%  Similarity=0.377  Sum_probs=52.6

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus        45 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~  101 (129)
T 2dmz_A           45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLT  101 (129)
T ss_dssp             CCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSSEEEE
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            468999999999999999999999999999999999999999999999866777665

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.64  E-value=8.8e-08  Score=79.23  Aligned_cols=56  Identities=21%  Similarity=0.429  Sum_probs=52.5

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+...+.+.+.
T Consensus        59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~  114 (123)
T 2iwq_A           59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM  114 (123)
T ss_dssp             CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            57999999999999999999999999999999999999999999999887777776

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.64  E-value=8.4e-08  Score=75.57  Aligned_cols=55  Identities=24%  Similarity=0.337  Sum_probs=50.6

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++.....+.+.
T Consensus        38 g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   92 (98)
T 1ihj_A           38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE   92 (98)
T ss_dssp             EEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEE
Confidence            8999999999999999989999999999999999999999999998866666654

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.63  E-value=9.6e-08  Score=74.99  Aligned_cols=56  Identities=29%  Similarity=0.538  Sum_probs=50.6

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++...++.....+.+.
T Consensus        33 ~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   88 (97)
T 2w4f_A           33 DEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR   88 (97)
T ss_dssp             BCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE
T ss_pred             CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEE
Confidence            4689999999999999999 9999999999999999999999888888766666665

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.63  E-value=4.3e-08  Score=78.50  Aligned_cols=47  Identities=32%  Similarity=0.514  Sum_probs=45.0

Q ss_pred             EEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959         11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL   57 (366)
Q Consensus        11 i~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~   57 (366)
                      ++|..|.++|||+++|.|++||+|++|||.++.++++++++.+|+.+
T Consensus        34 ~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   80 (103)
T 1ufx_A           34 PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA   80 (103)
T ss_dssp             CEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred             EEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            49999999999999999999999999999999999999999999874

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.62  E-value=1.2e-07  Score=74.25  Aligned_cols=54  Identities=24%  Similarity=0.329  Sum_probs=49.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||++ | |++||+|++|||.++.++++.++...++.....+.+.
T Consensus        35 ~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   88 (95)
T 1mfg_A           35 DGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI   88 (95)
T ss_dssp             CCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEE
T ss_pred             CCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEE
Confidence            5899999999999999 8 9999999999999999999999999998777776665

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.62  E-value=9.6e-08  Score=74.78  Aligned_cols=57  Identities=16%  Similarity=0.354  Sum_probs=51.4

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.....+.+.
T Consensus        32 ~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   88 (97)
T 2iwn_A           32 PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT   88 (97)
T ss_dssp             CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEE
T ss_pred             CCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            458999999999999999989999999999999999999999999998866666654

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.62  E-value=9.7e-08  Score=76.51  Aligned_cols=56  Identities=32%  Similarity=0.365  Sum_probs=50.6

Q ss_pred             CeEEEEEEcCCchhcccC-CCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC----cEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTG-LLHEGDEILEINGIEIRGKSIHIVCDILVGLTG----QEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G-~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~----~v~l~   64 (366)
                      .+++|..|.++|||+++| +|++||+|++|||.++.+++++++..+++...+    .+.+.
T Consensus        43 ~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~  103 (107)
T 3nfk_A           43 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL  103 (107)
T ss_dssp             EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEE
T ss_pred             CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEE
Confidence            468999999999999999 499999999999999999999999999998764    66654

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.62  E-value=5.8e-08  Score=80.19  Aligned_cols=56  Identities=25%  Similarity=0.305  Sum_probs=52.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++...+.+.+.
T Consensus        51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~  106 (124)
T 2daz_A           51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLV  106 (124)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            58999999999999999999999999999999999999999999998887777776

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.62  E-value=5.1e-08  Score=78.30  Aligned_cols=56  Identities=18%  Similarity=0.350  Sum_probs=50.9

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus        44 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~   99 (108)
T 2jre_A           44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLL   99 (108)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSEEEEE
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999999999998766666655

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.61  E-value=5.9e-08  Score=80.54  Aligned_cols=55  Identities=31%  Similarity=0.369  Sum_probs=51.6

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcC-CCCHHHHHHHHHcCCCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR-GKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~-~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +++|..|.++|||+++|.|++||+|++|||.++. +++++++..+|+.....+.|.
T Consensus        55 gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~  110 (128)
T 2db5_A           55 DIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLI  110 (128)
T ss_dssp             EEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEEE
Confidence            8999999999999999999999999999999997 999999999999877777766

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=98.61  E-value=9.7e-08  Score=75.41  Aligned_cols=54  Identities=28%  Similarity=0.295  Sum_probs=50.0

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +++|..|.++|||+++| |+.||.|++|||.++.+++++++..+++.....+.+.
T Consensus        35 g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   88 (99)
T 3khf_A           35 HHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLR   88 (99)
T ss_dssp             EEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEE
Confidence            67899999999999999 9999999999999999999999999999777777665

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=98.61  E-value=6.3e-08  Score=77.49  Aligned_cols=63  Identities=24%  Similarity=0.410  Sum_probs=54.2

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+.+...  ..+++|..|.++|||+++| |++||.|++|||.++.+.+++++..+++.....+.+.
T Consensus        16 G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   80 (106)
T 3ngh_A           16 GFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL   80 (106)
T ss_dssp             CCEEECCTTCCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence            4445432  3579999999999999999 9999999999999999999999999998777777765

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.61  E-value=2.8e-08  Score=79.91  Aligned_cols=57  Identities=23%  Similarity=0.433  Sum_probs=52.6

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.....+.+.
T Consensus        41 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   97 (108)
T 1q7x_A           41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLL   97 (108)
T ss_dssp             SCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEE
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            368999999999999999999999999999999999999999999999877777765

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=7.8e-08  Score=76.64  Aligned_cols=57  Identities=26%  Similarity=0.304  Sum_probs=51.6

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||+|++|||..+.++++.++..+++.....+.+.
T Consensus        37 ~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   93 (104)
T 2djt_A           37 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLV   93 (104)
T ss_dssp             ECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            467999999999999999989999999999999999999999999998866666665

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.61  E-value=4.6e-08  Score=79.77  Aligned_cols=56  Identities=27%  Similarity=0.359  Sum_probs=52.0

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcC-CCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR-GKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~-~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++. +++++++..+++.....+.+.
T Consensus        49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~  105 (117)
T 2o2t_A           49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLV  105 (117)
T ss_dssp             EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEE
Confidence            58999999999999999999999999999999998 999999999999877777665

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.61  E-value=4.5e-08  Score=79.10  Aligned_cols=64  Identities=34%  Similarity=0.547  Sum_probs=55.4

Q ss_pred             CcEEEEeC-CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG-DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~-~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++.... .+++|..|.++|||+++|.|+.||+|++|||..+.+++++++..+++.....+.+.
T Consensus        29 G~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~   93 (111)
T 2dlu_A           29 GFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRML   93 (111)
T ss_dssp             CEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEE
T ss_pred             CEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            55665432 68999999999999999989999999999999999999999999998766666665

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.61  E-value=7.9e-08  Score=76.40  Aligned_cols=63  Identities=19%  Similarity=0.302  Sum_probs=55.3

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...  ..+++|..|.++|||+++| |++||+|++|||.++.+++++++...++.....+.+.
T Consensus        20 G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   84 (102)
T 2d90_A           20 GFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL   84 (102)
T ss_dssp             SCEEEECSSSSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEE
T ss_pred             cEEEEeecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            5667643  4689999999999999999 9999999999999999999999999998876777666

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.61  E-value=4.8e-08  Score=79.95  Aligned_cols=64  Identities=28%  Similarity=0.495  Sum_probs=54.9

Q ss_pred             CcEEEEe----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...    ..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++...+.+.++
T Consensus        30 G~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l   97 (119)
T 1x6d_A           30 GFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAV   97 (119)
T ss_dssp             SEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEE
T ss_pred             CEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEE
Confidence            4555432    247999999999999999999999999999999999999999999999887776543

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.60  E-value=5.9e-08  Score=74.33  Aligned_cols=55  Identities=15%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||.++.+.++.++...++...+++.+.
T Consensus        25 ~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   79 (85)
T 1rgw_A           25 MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT   79 (85)
T ss_dssp             SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEE
T ss_pred             CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEE
Confidence            478999999999999999 9999999999999999999999999998777776665

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.60  E-value=8e-08  Score=76.51  Aligned_cols=55  Identities=24%  Similarity=0.323  Sum_probs=50.2

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||++ | |++||+|++|||.++.+.++.++...++.....+.+.
T Consensus        42 ~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   96 (103)
T 1n7t_A           42 DDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI   96 (103)
T ss_dssp             CCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEE
T ss_pred             CCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEE
Confidence            45899999999999999 8 9999999999999999999999999998777777665

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.60  E-value=1.4e-07  Score=76.83  Aligned_cols=64  Identities=25%  Similarity=0.378  Sum_probs=55.2

Q ss_pred             CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....   .+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+++...+.+.+.
T Consensus        39 G~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~  105 (114)
T 2gzv_A           39 GISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH  105 (114)
T ss_dssp             SEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred             eEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            55665432   36999999999999999999999999999999999999999999999877776654

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.60  E-value=1.5e-07  Score=70.97  Aligned_cols=56  Identities=25%  Similarity=0.387  Sum_probs=50.6

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++...+.+.+.
T Consensus        21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   76 (81)
T 2rcz_A           21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMV   76 (81)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEE
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEE
Confidence            57899999999999999889999999999999999999999999998877765554

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.59  E-value=1.1e-07  Score=73.57  Aligned_cols=63  Identities=24%  Similarity=0.255  Sum_probs=53.4

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      |+++.....+++|..|.++|||+++| |++||+|++|||..+.+.+++++..+++..  ...+.+.
T Consensus        20 G~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~   84 (90)
T 2eaq_A           20 GFTIKWDIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMD   84 (90)
T ss_dssp             SEEEEEETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEE
T ss_pred             cEEEEecCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEE
Confidence            56666667899999999999999999 999999999999999888999999988752  4455443

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.59  E-value=1e-07  Score=76.19  Aligned_cols=62  Identities=24%  Similarity=0.414  Sum_probs=53.9

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++| |++||+|++|||..+.+++++++..+|+. ...+.+.
T Consensus        30 G~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~   94 (104)
T 1wi2_A           30 GFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMR   94 (104)
T ss_dssp             SEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEEE
T ss_pred             cEEEEcccCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEEE
Confidence            5566542   2479999999999999999 99999999999999999999999999988 6667665

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.59  E-value=1.3e-07  Score=77.37  Aligned_cols=64  Identities=27%  Similarity=0.448  Sum_probs=56.1

Q ss_pred             CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....  .+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++.....+.+.
T Consensus        28 G~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   93 (119)
T 1tp5_A           28 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII   93 (119)
T ss_dssp             CEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE
T ss_pred             cEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            56665443  68999999999999999989999999999999999999999999998877777766

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.58  E-value=3e-08  Score=75.75  Aligned_cols=55  Identities=27%  Similarity=0.429  Sum_probs=50.1

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||.++.+.+++++..+++...+.+.+.
T Consensus        23 ~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   77 (83)
T 2kv8_A           23 APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMV   77 (83)
T ss_dssp             SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEE
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            468999999999999999 9999999999999999999999999998877776664

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.7e-07  Score=74.29  Aligned_cols=62  Identities=29%  Similarity=0.556  Sum_probs=53.7

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++| |++||+|++|||..+.+.+++++...++. ...+.+.
T Consensus        25 G~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~   89 (100)
T 2eeh_A           25 GFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHMM   89 (100)
T ss_dssp             SEEEECCTTTTCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEEE
T ss_pred             cEEEEccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEE
Confidence            4566543   3689999999999999999 99999999999999999999999999987 5666665

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.58  E-value=1.3e-07  Score=73.90  Aligned_cols=52  Identities=29%  Similarity=0.536  Sum_probs=47.7

Q ss_pred             EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +|..|.++|||+++| |++||+|++|||.++.+.+++++..+|+.....+.+.
T Consensus        34 ~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~   85 (90)
T 1y7n_A           34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMK   85 (90)
T ss_dssp             EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEE
T ss_pred             EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            899999999999999 9999999999999999999999999998776666554

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.57  E-value=9.7e-08  Score=79.47  Aligned_cols=56  Identities=20%  Similarity=0.268  Sum_probs=50.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|+.||+|++|||.++.+++++++..+|+...  ..+.+.
T Consensus        43 ~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~  100 (129)
T 2kpk_A           43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE  100 (129)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence            36999999999999999999999999999999999999999999999874  445554

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.57  E-value=4.5e-08  Score=77.81  Aligned_cols=64  Identities=27%  Similarity=0.339  Sum_probs=54.3

Q ss_pred             CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....   .+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.....+.+.
T Consensus        25 G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   91 (103)
T 1wfv_A           25 GFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL   91 (103)
T ss_dssp             SBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEE
T ss_pred             CEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            45555433   38999999999999999989999999999999999999999999998656666554

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.57  E-value=6.7e-08  Score=79.25  Aligned_cols=56  Identities=29%  Similarity=0.345  Sum_probs=49.1

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC----CCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL----TGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~----~~~v~l~   64 (366)
                      +.++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+..    ...+++.
T Consensus        43 ~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~  102 (118)
T 1v6b_A           43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV  102 (118)
T ss_dssp             CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEE
Confidence            4599999999999999944999999999999999999999999999865    4456655

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.57  E-value=1.4e-07  Score=74.48  Aligned_cols=56  Identities=32%  Similarity=0.426  Sum_probs=49.4

Q ss_pred             CcEEEEe----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959          1 GATIRNE----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL   57 (366)
Q Consensus         1 G~~i~~~----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~   57 (366)
                      |+++...    ..+++|..|.++|||+++| |+.||+|++|||.++.+++++++..++++.
T Consensus        23 Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~~   82 (94)
T 3kzd_A           23 GFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP   82 (94)
T ss_dssp             SEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHSS
T ss_pred             CEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence            5666542    2489999999999999999 999999999999999999999999999863

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.57  E-value=8.4e-08  Score=79.85  Aligned_cols=64  Identities=16%  Similarity=0.337  Sum_probs=55.5

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      |+++.....+++|..|.++|||+++|.|++||.|++|||.++.+.+++++..+|+..  ...+.+.
T Consensus        41 G~~i~~~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~  106 (126)
T 1wif_A           41 GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK  106 (126)
T ss_dssp             CCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEE
T ss_pred             eEEEEcCCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEE
Confidence            566666677899999999999999999999999999999999999999999999874  3455554

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=98.56  E-value=3.7e-08  Score=76.67  Aligned_cols=55  Identities=27%  Similarity=0.427  Sum_probs=49.2

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus        27 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   81 (91)
T 2vsp_A           27 PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLL   81 (91)
T ss_dssp             SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEE
T ss_pred             CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            578999999999999999 9999999999999999999999999998875566654

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.56  E-value=2.2e-07  Score=72.05  Aligned_cols=56  Identities=25%  Similarity=0.387  Sum_probs=51.0

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||.|++|||.++.+++++++..+|+...+.+.+.
T Consensus        23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   78 (92)
T 3cyy_A           23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMV   78 (92)
T ss_dssp             EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            57899999999999999889999999999999999999999999999877766554

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.56  E-value=2.2e-07  Score=74.84  Aligned_cols=56  Identities=29%  Similarity=0.538  Sum_probs=50.9

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++| |++||+|++|||..+.+.++.++...++.....+.+.
T Consensus        45 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~  100 (110)
T 1x5q_A           45 DEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR  100 (110)
T ss_dssp             CCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEE
Confidence            4789999999999999999 9999999999999999999999999998866666665

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.56  E-value=1.7e-07  Score=77.07  Aligned_cols=56  Identities=29%  Similarity=0.501  Sum_probs=50.0

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+..  ...+.+.
T Consensus        58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~  115 (121)
T 2kom_A           58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL  115 (121)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEE
Confidence            5799999999999999998999999999999999999999999999875  3455554

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.56  E-value=5.3e-08  Score=79.24  Aligned_cols=56  Identities=30%  Similarity=0.478  Sum_probs=51.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus        43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~   98 (116)
T 2dm8_A           43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLV   98 (116)
T ss_dssp             SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            58999999999999999999999999999999999999999999999877776665

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.54  E-value=1.3e-07  Score=84.41  Aligned_cols=64  Identities=17%  Similarity=0.358  Sum_probs=56.9

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++.....+++|..|.+||+|+++|.|++||+|++|||+++.+++++++..+++...+.+.|.
T Consensus       128 G~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~  191 (206)
T 3r0h_A          128 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME  191 (206)
T ss_dssp             CEEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             CeEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            4555555568999999999999999889999999999999999999999999999988887776

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.54  E-value=2.2e-07  Score=75.35  Aligned_cols=56  Identities=20%  Similarity=0.135  Sum_probs=50.5

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc-EEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~-v~l~   64 (366)
                      ..+++|..|.++|||+++| |+.||+|++|||.++.+++++++..+++...+. +.+.
T Consensus        43 ~~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~   99 (109)
T 2vsv_A           43 NAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMK   99 (109)
T ss_dssp             SSSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEE
T ss_pred             CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence            3568899999999999999 999999999999999999999999999987775 6654

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.54  E-value=1.9e-07  Score=77.02  Aligned_cols=64  Identities=23%  Similarity=0.310  Sum_probs=54.2

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+...  ..+.+.
T Consensus        33 G~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~  101 (123)
T 1ueq_A           33 GFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV  101 (123)
T ss_dssp             SEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE
T ss_pred             eEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence            4555431   346999999999999999999999999999999999999999999999853  566665

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.54  E-value=8.8e-08  Score=78.39  Aligned_cols=63  Identities=30%  Similarity=0.381  Sum_probs=53.2

Q ss_pred             CcEEEEeC---CeEEEEEEcCCchhccc--CCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC----cEEEe
Q psy16959          1 GATIRNEG---DAVIVGRVVKGGLADRT--GLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG----QEMTM   64 (366)
Q Consensus         1 G~~i~~~~---~gi~I~~v~~gs~A~~~--G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~----~v~l~   64 (366)
                      |+++....   .+++|..|.++|||+++  | |++||+|++|||.++.++++.++..+++...+    .+.+.
T Consensus        30 G~~l~gg~~~~~~v~V~~V~~~spA~~a~gG-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~  101 (119)
T 2cs5_A           30 GFNVKGGYDQKMPVIVSRVAPGTPADLCVPR-LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL  101 (119)
T ss_dssp             SEEEEEEGGGTEEEEEEEECSSSTTTSSSSC-CCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred             CEEEecccCCCCCeEEEEECCCCHHHHhhcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEE
Confidence            45555332   37999999999999999  6 99999999999999999999999999988743    66665

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.54  E-value=2.2e-07  Score=76.86  Aligned_cols=63  Identities=21%  Similarity=0.344  Sum_probs=52.7

Q ss_pred             CcEEEE-eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959          1 GATIRN-EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM   64 (366)
Q Consensus         1 G~~i~~-~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~   64 (366)
                      |+.+.. ...+++|..|.++|||+++| |++||+|++|||..+.+.+++++...|+.  ....+.+.
T Consensus        42 G~~l~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~  107 (124)
T 3tsv_A           42 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL  107 (124)
T ss_dssp             CEEEEECTTSCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEE
T ss_pred             eEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE
Confidence            455554 34689999999999999999 99999999999999999999999998874  34455554

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.53  E-value=5.6e-08  Score=78.56  Aligned_cols=56  Identities=21%  Similarity=0.348  Sum_probs=51.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus        44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l~   99 (111)
T 1uju_A           44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL   99 (111)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEEC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            47999999999999999999999999999999999999999999999877777665

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.51  E-value=2.5e-07  Score=72.28  Aligned_cols=61  Identities=28%  Similarity=0.419  Sum_probs=51.7

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++.. ..+++|..|.++|||+++| |++||+|++|||..+.+.++.++...++. ...+.+.
T Consensus        22 G~~l~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-g~~v~l~   82 (93)
T 2dls_A           22 GFTVSG-DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKS-GAYVALT   82 (93)
T ss_dssp             CEEEEC-SSSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTS-SSEEEEE
T ss_pred             eEEEeC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEE
Confidence            444542 4679999999999999999 99999999999999999999999988874 6666665

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.51  E-value=4.8e-07  Score=73.79  Aligned_cols=61  Identities=20%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      |++|.....+.+|.+|.+  ++..+| |++||.|++|||.++.+++|++++.+|+.++  ..++|+
T Consensus        26 GFsI~~~~~g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~   88 (113)
T 3soe_A           26 GFAIADSPTGQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL   88 (113)
T ss_dssp             SEEEEEETTEEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEE
T ss_pred             cEEEeCCCCCcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence            678866667888999988  466777 9999999999999999999999999999864  356665

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.49  E-value=5.7e-07  Score=71.94  Aligned_cols=54  Identities=20%  Similarity=0.351  Sum_probs=48.5

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+ +| |++||+|++|||.++.+.++.++...++.....+.+.
T Consensus        39 ~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   92 (107)
T 2h2b_A           39 TSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKIT   92 (107)
T ss_dssp             CCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEE
Confidence            489999999999999 87 9999999999999999999999988888766766665

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.49  E-value=1.8e-07  Score=73.19  Aligned_cols=55  Identities=22%  Similarity=0.217  Sum_probs=50.7

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||.++.+.+++++..+++.....+.+.
T Consensus        30 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   84 (94)
T 1vb7_A           30 TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQ   84 (94)
T ss_dssp             EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEE
T ss_pred             CCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            478999999999999999 9999999999999999999999999999877777665

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=7.6e-08  Score=77.00  Aligned_cols=63  Identities=21%  Similarity=0.348  Sum_probs=53.9

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...  ..+++|..|.++|||+++| |++||.|++|||.++.++++.++...++...+.+.+.
T Consensus        22 G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   86 (106)
T 2eei_A           22 GFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFL   86 (106)
T ss_dssp             SCCEECCSSCCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEE
T ss_pred             CEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            4555422  3589999999999999999 9999999999999999999999999998776776665

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.49  E-value=4.2e-07  Score=75.11  Aligned_cols=63  Identities=21%  Similarity=0.322  Sum_probs=54.3

Q ss_pred             CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....  .+++|..|.++|||+++| |+.||+|++|||.++.+++++++..+|+...+....+
T Consensus        23 G~~l~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l   87 (128)
T 2kjd_A           23 GFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLL   87 (128)
T ss_dssp             CEEEEECSSSCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEE
T ss_pred             cEEEEecCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEE
Confidence            55665433  489999999999999999 9999999999999999999999999999886665533

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.49  E-value=2.6e-07  Score=82.12  Aligned_cols=62  Identities=31%  Similarity=0.514  Sum_probs=54.4

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.+||||+++| |++||+|++|||.++.+++++++..+++. ...+.+.
T Consensus        99 G~~i~~~~~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l~  163 (192)
T 3k1r_A           99 GLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSIK  163 (192)
T ss_dssp             CEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEEE
T ss_pred             eEEEEcccccCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEEE
Confidence            5566433   3589999999999999999 99999999999999999999999999988 7777765

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=98.48  E-value=1.5e-07  Score=76.52  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=51.1

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++| |++||+|++|||.++.+.+++++...++.....+.+.
T Consensus        37 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   92 (114)
T 2edz_A           37 TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL   92 (114)
T ss_dssp             CCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEE
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            4689999999999999999 9999999999999999999999999998876666665

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.48  E-value=3.1e-07  Score=74.88  Aligned_cols=63  Identities=27%  Similarity=0.430  Sum_probs=53.3

Q ss_pred             CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++... ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++...++.....+.+.
T Consensus        33 G~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~   96 (117)
T 1uit_A           33 GISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITIL   96 (117)
T ss_dssp             CEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEE
T ss_pred             cEEEEccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            4455443 4689999999999999999 9999999999999999999999887777666666665

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.47  E-value=8.1e-08  Score=76.25  Aligned_cols=55  Identities=22%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||..+.+++++++..+++...+.+.+.
T Consensus        36 ~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~   90 (100)
T 1whd_A           36 SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL   90 (100)
T ss_dssp             SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            568999999999999999 9999999999999999999999999999877776665

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.45  E-value=4.7e-07  Score=73.06  Aligned_cols=64  Identities=25%  Similarity=0.518  Sum_probs=53.5

Q ss_pred             CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC-CcEEEe
Q psy16959          1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT-GQEMTM   64 (366)
Q Consensus         1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~-~~v~l~   64 (366)
                      |+++....  .+++|..|.++|||+++|.|+.||+|++|||..+.+++++++..+|+... ..+.+.
T Consensus        16 G~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~   82 (112)
T 1qau_A           16 GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL   82 (112)
T ss_dssp             SEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEE
T ss_pred             eEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEE
Confidence            56666543  48999999999999999933999999999999999999999999998754 455554

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.45  E-value=4.8e-07  Score=71.66  Aligned_cols=62  Identities=29%  Similarity=0.410  Sum_probs=51.1

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++| |++||+|++|||..+.++++.+++..++.. ..+.+.
T Consensus        24 G~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~v~l~   88 (101)
T 1uez_A           24 GFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS-KKLVLS   88 (101)
T ss_dssp             SEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS-SSCCEE
T ss_pred             cEEEeCCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCC-CeEEEE
Confidence            5666544   3589999999999999999 999999999999999999998887777653 455444

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.44  E-value=2.4e-07  Score=75.57  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=49.0

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+ +| |++||+|++|||.++.++++.+++.+++.....+.+.
T Consensus        46 ~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~   99 (117)
T 2csj_A           46 TSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIV   99 (117)
T ss_dssp             CBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEE
T ss_pred             CCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEE
Confidence            479999999999997 66 9999999999999999999999999999877777665

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.44  E-value=5.4e-07  Score=79.63  Aligned_cols=55  Identities=24%  Similarity=0.323  Sum_probs=51.3

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||++ | |++||+|++|||.++.++++.+++..++...+.+.|.
T Consensus        23 ~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   77 (195)
T 2qbw_A           23 DDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI   77 (195)
T ss_dssp             CCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred             CCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            35899999999999999 8 9999999999999999999999999999988877776

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.44  E-value=1.9e-07  Score=74.37  Aligned_cols=63  Identities=21%  Similarity=0.239  Sum_probs=53.0

Q ss_pred             CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++....   .+++|..|.++|||+++| |++||+|++|||..+.+++++++..+|+.....+.+.
T Consensus        18 G~~l~~g~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   83 (103)
T 1v5l_A           18 GFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK   83 (103)
T ss_dssp             SBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECE
T ss_pred             CEEEeccccCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            44554332   378999999999999999 9999999999999999999999999998875555554

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=3.1e-07  Score=71.87  Aligned_cols=55  Identities=22%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++.....+.+.
T Consensus        32 ~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   86 (94)
T 2eeg_A           32 APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLS   86 (94)
T ss_dssp             SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            578999999999999999 9999999999999999999999999998866666655

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.43  E-value=2.4e-07  Score=86.50  Aligned_cols=64  Identities=23%  Similarity=0.361  Sum_probs=56.0

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|...   ..+++|..|.+||||++++.|++||+|++|||+++.++++++++.+|+...+.++|.
T Consensus        92 Gf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~  158 (263)
T 1z87_A           92 GISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLE  158 (263)
T ss_dssp             CCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEE
T ss_pred             eEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEE
Confidence            6777653   258999999999999995339999999999999999999999999999988887776

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.43  E-value=3.8e-07  Score=72.57  Aligned_cols=63  Identities=21%  Similarity=0.322  Sum_probs=53.5

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++| |++||+|++|||..+.++++.++..+++.....+.+.
T Consensus        18 G~~l~gg~~~~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   83 (103)
T 1wf7_A           18 GFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT   83 (103)
T ss_dssp             SCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEE
T ss_pred             CEEEeccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            4555532   2368999999999999999 9999999999999999999999999998876666665

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.43  E-value=8.8e-07  Score=68.23  Aligned_cols=61  Identities=28%  Similarity=0.399  Sum_probs=47.8

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc-C-CCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG-L-TGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~-~-~~~v~l~   64 (366)
                      |+++...  ..+++|..+ ++|||+ +| |++||.|++|||.++.+.+++++...++. . ..++.+.
T Consensus        17 G~~~~~~~~~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~   81 (88)
T 3bpu_A           17 GFTIADSPGGGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLL   81 (88)
T ss_dssp             SCEEEECTTSSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE
T ss_pred             eEEEEecCCCCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEE
Confidence            5667644  357899887 999999 88 99999999999999999999999999985 2 3445543

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.41  E-value=1.1e-06  Score=69.10  Aligned_cols=61  Identities=30%  Similarity=0.338  Sum_probs=51.3

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      |+++.....+++|..|.++  |+++| |++||+|++|||.++.+++++++..+|+...  ..+.+.
T Consensus        24 G~~i~~~~~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~   86 (96)
T 1ujv_A           24 GFTIADSPTGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLI   86 (96)
T ss_dssp             SEEEEEETTEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEE
T ss_pred             eEEEEcCCCCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence            5677666678999999984  67788 9999999999999999999999999999863  455554

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.40  E-value=7.1e-07  Score=78.41  Aligned_cols=56  Identities=20%  Similarity=0.341  Sum_probs=52.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++.....+.+.
T Consensus        35 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   90 (196)
T 3gsl_A           35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY   90 (196)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            48999999999999999999999999999999999999999999999887777776

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.39  E-value=8.4e-07  Score=74.87  Aligned_cols=56  Identities=25%  Similarity=0.386  Sum_probs=49.9

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc-EEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~-v~l~   64 (366)
                      ..+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+...+. +.+.
T Consensus        63 ~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~  119 (139)
T 2vz5_A           63 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL  119 (139)
T ss_dssp             CCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEE
T ss_pred             CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEE
Confidence            3689999999999999999 999999999999999999999999999875544 5554

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.39  E-value=7.7e-07  Score=73.70  Aligned_cols=54  Identities=24%  Similarity=0.289  Sum_probs=48.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||.|++|||..+.+.++.++...++.. ..+.+.
T Consensus        46 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~v~l~   99 (128)
T 1uf1_A           46 LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILT   99 (128)
T ss_dssp             CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEEEE
T ss_pred             CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEE
Confidence            479999999999999999 999999999999999999999999988774 466554

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.39  E-value=5.8e-07  Score=73.90  Aligned_cols=56  Identities=20%  Similarity=0.347  Sum_probs=50.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||..+.+++++++..+|+...  ..+.+.
T Consensus        45 ~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~  102 (122)
T 1v5q_A           45 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE  102 (122)
T ss_dssp             SCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEE
T ss_pred             CCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence            46899999999999999989999999999999999999999999998764  466655

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.38  E-value=1.7e-07  Score=75.66  Aligned_cols=56  Identities=27%  Similarity=0.462  Sum_probs=51.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||+++.+.++.++..+++.....+.+.
T Consensus        39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~   94 (113)
T 1um7_A           39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIV   94 (113)
T ss_dssp             CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            68999999999999999989999999999999999999999999998877776665

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=97.73  E-value=4.3e-08  Score=79.79  Aligned_cols=55  Identities=31%  Similarity=0.488  Sum_probs=49.6

Q ss_pred             CeEEEEEEcCCchhcc-cCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~-~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||++ +| |++||+|++|||.++.+.+++++..+++...+++.+.
T Consensus        53 ~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~  108 (112)
T 2lob_A           53 VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE  108 (112)
Confidence            4789999999999999 67 9999999999999999999999999998877776553

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.37  E-value=1.2e-06  Score=75.67  Aligned_cols=63  Identities=25%  Similarity=0.332  Sum_probs=54.9

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l~   64 (366)
                      |+++.....+++|..|.++|||+++| |+.||+|++|||..+.+.+++.+..+++...+ .+.+.
T Consensus        19 G~~~~~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~   82 (166)
T 1w9e_A           19 GLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMT   82 (166)
T ss_dssp             SEEEEEETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEE
Confidence            56777777899999999999999999 99999999999999999998778888877665 55555

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1.9e-07  Score=77.37  Aligned_cols=55  Identities=29%  Similarity=0.430  Sum_probs=50.9

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus        61 ~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~  115 (126)
T 2yuy_A           61 DTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS  115 (126)
T ss_dssp             CCCCBCCCCSSSHHHHHT-CCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEE
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            568999999999999999 9999999999999999999999999999876777765

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=4.5e-07  Score=71.85  Aligned_cols=62  Identities=23%  Similarity=0.376  Sum_probs=51.7

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhccc-CCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRT-GLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~-G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++ | |++||+|++|||.++.+. ++++..+++.....+.+.
T Consensus        24 G~~~~gg~~~~~~v~V~~V~~~spA~~agG-L~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~   89 (100)
T 2edp_A           24 GFTLKGGLEHCEPLTVSKIEDGGKAALSQK-MRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLI   89 (100)
T ss_dssp             CCCEEEEGGGTEEEEECCCCTTSHHHHHTS-CCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEE
T ss_pred             CEEEeccCCCCCCeEEEEECCCCHHHHcCC-CCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEE
Confidence            4555432   346899999999999999 6 999999999999999997 888999998876676665

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=1.8e-07  Score=73.65  Aligned_cols=55  Identities=27%  Similarity=0.252  Sum_probs=49.5

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+ +| |++||+|++|||.++.++++.++...++.....+.+.
T Consensus        30 ~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~   84 (96)
T 2edv_A           30 SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSIT   84 (96)
T ss_dssp             SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEE
T ss_pred             CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            3478999999999996 77 9999999999999999999999999999877777776

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.33  E-value=7.4e-07  Score=72.29  Aligned_cols=54  Identities=26%  Similarity=0.355  Sum_probs=49.0

Q ss_pred             eEEEEEEcCCchhcc-cCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         10 AVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~-~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +++|..|.++|||++ +| |++||+|++|||..+.+++++++..+|+.....+.+.
T Consensus        44 ~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   98 (114)
T 1uew_A           44 PHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLR   98 (114)
T ss_dssp             SCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEE
T ss_pred             CeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            469999999999999 88 9999999999999999999999999999866666665

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.32  E-value=8e-07  Score=78.10  Aligned_cols=56  Identities=21%  Similarity=0.356  Sum_probs=51.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.+...+.+.
T Consensus       130 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~  185 (196)
T 3gsl_A          130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLK  185 (196)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEE
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEE
Confidence            47999999999999999999999999999999999999999999999877777665

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.31  E-value=5.6e-07  Score=74.35  Aligned_cols=64  Identities=25%  Similarity=0.524  Sum_probs=53.5

Q ss_pred             CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEEe
Q psy16959          1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMTM   64 (366)
Q Consensus         1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l~   64 (366)
                      |+++....  .+++|..|.++|||+++|.|+.||+|++|||..+.+++++++..+|+...+ .+.+.
T Consensus        23 G~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~   89 (127)
T 1b8q_A           23 GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL   89 (127)
T ss_dssp             SCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEE
T ss_pred             eEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence            56666544  389999999999999999339999999999999999999999999987654 45554

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=7.1e-07  Score=72.84  Aligned_cols=53  Identities=32%  Similarity=0.403  Sum_probs=47.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||.++.+++++++..+++..  .+.+.
T Consensus        44 ~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~--~v~l~   96 (114)
T 2d8i_A           44 RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP--SLGLL   96 (114)
T ss_dssp             EEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTSS--EEEEE
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC--cEEEE
Confidence            479999999999999999 999999999999999999999999999863  55554

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.30  E-value=1.4e-06  Score=70.45  Aligned_cols=62  Identities=23%  Similarity=0.419  Sum_probs=52.6

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++| |++||+|++|||..+.++++.++..+++.. +.+.+.
T Consensus        30 G~~l~~~~~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~l~   94 (114)
T 1x5n_A           30 GCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLTIS   94 (114)
T ss_dssp             CEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEEEE
T ss_pred             eEEEeecCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEE
Confidence            5666532   3589999999999999999 999999999999999999988899988875 566655

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.29  E-value=5e-07  Score=73.31  Aligned_cols=56  Identities=23%  Similarity=0.272  Sum_probs=49.6

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc-EEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~-v~l~   64 (366)
                      ..+++|..|.++|||+++| |+.||+|++|||..+.+++++++..+|+...+. +.+.
T Consensus        35 ~~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~   91 (111)
T 1vae_A           35 NTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMK   91 (111)
T ss_dssp             SSSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEE
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEE
Confidence            3568899999999999999 999999999999999999999999999987764 5444

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.25  E-value=2.3e-06  Score=76.17  Aligned_cols=56  Identities=18%  Similarity=0.138  Sum_probs=52.1

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCC--CCHHHHHHHHHcCCCc-EEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG--KSIHIVCDILVGLTGQ-EMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~--~~~~~a~~~Lk~~~~~-v~l~   64 (366)
                      .+++|..|.++|||+++|.|+.||+|++|||.++.+  .++.+++.+++...+. +.+.
T Consensus        45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~  103 (206)
T 3r0h_A           45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLT  103 (206)
T ss_dssp             SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEE
T ss_pred             CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEE
Confidence            479999999999999998899999999999999999  9999999999998887 7665

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.21  E-value=1.5e-07  Score=89.28  Aligned_cols=111  Identities=29%  Similarity=0.481  Sum_probs=60.9

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHH--HHHHHHcCCeEE-
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDA--IRTVVNAGKICV-  315 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~--i~~vir~~k~~~-  315 (366)
                      .+|||||+|||.|..|+.+|++  +|+|++||+|+++++.+.+||+|+++..... .-.++=++.  .++..++-.-.. 
T Consensus         4 ~s~yvRa~fdY~~~~D~~~P~~--gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~~e~~~~~~~~~~~   81 (292)
T 3tvt_A            4 RSLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERKMRARDRSVK   81 (292)
T ss_dssp             -CCEEEECSCBCC-----------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHHHHHHHHC------
T ss_pred             ceEEEEEeccCCCCCCCCCCCC--cCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHHHHHHHHHhhcccc
Confidence            4799999999999999999998  8999999999999999999999988754332 223332332  333333221111 


Q ss_pred             --Ecccc-hhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcC
Q psy16959        316 --LNLHP-QSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG  354 (366)
Q Consensus       316 --l~~~p-~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~  354 (366)
                        .++.+ ..+.++......|+|+++  +++..|.+++.+.-
T Consensus        82 ~~~~~~~YE~V~~~~~~~~RpvVl~G--p~K~tl~~~Ll~~~  121 (292)
T 3tvt_A           82 SEENVLSYEAVQRLSINYTRPVIILG--PLKDRINDDLISEY  121 (292)
T ss_dssp             ----CCCEEEEEEEECSSCCCEEEES--TTHHHHHHHHHHHC
T ss_pred             ccccccchheEEeccCCCCCeEEEeC--CCHHHHHHHHHHhC
Confidence              11111 122333333447777765  35888888887764

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.18  E-value=3.2e-06  Score=75.05  Aligned_cols=64  Identities=23%  Similarity=0.337  Sum_probs=54.1

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..+++|..|.++|||+++|.|+.||+|++|||.++.+.+|.++..+++.....+.+.
T Consensus        22 G~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~   88 (200)
T 2qt5_A           22 GLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLE   88 (200)
T ss_dssp             CEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEE
T ss_pred             CEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            4555432   356899999999999999339999999999999999999999999998877777666

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.17  E-value=3.1e-06  Score=69.72  Aligned_cols=62  Identities=23%  Similarity=0.388  Sum_probs=50.5

Q ss_pred             CcEEEEeC-----CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC-CcEEEe
Q psy16959          1 GATIRNEG-----DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT-GQEMTM   64 (366)
Q Consensus         1 G~~i~~~~-----~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~-~~v~l~   64 (366)
                      |+++....     .+++|..|.++|||+++|.|++||+|++|||..+.  +++++..+|+... ..+.+.
T Consensus        35 G~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~  102 (124)
T 1wh1_A           35 GLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLL  102 (124)
T ss_dssp             CEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSCCSCCEE
T ss_pred             cEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCEEEEE
Confidence            55665432     68999999999999999989999999999999997  4789999998754 344443

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.14  E-value=6.3e-06  Score=73.13  Aligned_cols=56  Identities=29%  Similarity=0.477  Sum_probs=50.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|++||.|++|||.++.+++++++..+|+.....+.+.
T Consensus       135 ~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~  190 (200)
T 2qt5_A          135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLL  190 (200)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            47899999999999999989999999999999999999999999999855566554

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.12  E-value=5.1e-06  Score=68.08  Aligned_cols=55  Identities=29%  Similarity=0.373  Sum_probs=49.4

Q ss_pred             CeEEEEEEcC--CchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVK--GGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~--gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.+  +|||+++| |+.||+|++|||..+.+.+++++...|+.....+.+.
T Consensus        44 ~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~  100 (118)
T 2yub_A           44 TTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLL  100 (118)
T ss_dssp             CEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEE
T ss_pred             CcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEE
Confidence            6899999999  99999999 9999999999999999999999999998874455554

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.11  E-value=2e-06  Score=81.15  Aligned_cols=42  Identities=21%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhccCCcceeeec-cCCCCC
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPH-TSRPMK  143 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~-tTr~pr  143 (366)
                      ..+.+|+|+||+||||||++..|++..+.....++. ++|.+.
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~   73 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH   73 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhc
Confidence            346789999999999999999999864323344444 455543

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.11  E-value=4.7e-06  Score=73.86  Aligned_cols=57  Identities=30%  Similarity=0.464  Sum_probs=51.6

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++|.|++||.|++|||.++.+++++++..+|+.....+.+.
T Consensus       134 ~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~  190 (196)
T 1p1d_A          134 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK  190 (196)
T ss_dssp             TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEE
T ss_pred             CCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence            458999999999999999989999999999999999999999999998876666654

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.11  E-value=1.5e-06  Score=78.78  Aligned_cols=63  Identities=21%  Similarity=0.337  Sum_probs=52.9

Q ss_pred             CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE-EEe
Q psy16959          1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQE-MTM   64 (366)
Q Consensus         1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v-~l~   64 (366)
                      |+++....  .+++|..|.+||||+++| |+.||+|++|||..+.+++++++..+|+.....+ .+.
T Consensus        23 G~~l~~~~~~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~l~   88 (216)
T 2krg_A           23 GFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV   88 (216)
T ss_dssp             CEEECCCSSSCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEEEE
T ss_pred             eEEEEecCCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEE
Confidence            45554333  389999999999999999 9999999999999999999999999998765556 443

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.11  E-value=5.7e-06  Score=73.28  Aligned_cols=56  Identities=20%  Similarity=0.347  Sum_probs=49.9

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      .+++|..|.++|||+++|.|+.||.|++|||..+.+++++++..+|+...  ..+.+.
T Consensus        36 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~   93 (196)
T 1p1d_A           36 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE   93 (196)
T ss_dssp             CSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence            46899999999999999989999999999999999999999999998874  445554

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.93  E-value=2.5e-06  Score=78.31  Aligned_cols=39  Identities=13%  Similarity=0.169  Sum_probs=29.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRP  141 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~  141 (366)
                      .+..|+|+||+||||||++..|++..+...++...++|.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~   66 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLRE   66 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHH
Confidence            345689999999999999999998765444555444443

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.83  E-value=4.2e-06  Score=82.32  Aligned_cols=55  Identities=35%  Similarity=0.548  Sum_probs=49.1

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC--cEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG--QEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~--~v~l~   64 (366)
                      +++|..|.+||||+++|.|+.||+|++|||.++.+++++++..+|+...+  .+.+.
T Consensus       233 g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~  289 (388)
T 3suz_A          233 TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN  289 (388)
T ss_dssp             CCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEE
T ss_pred             CEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccc
Confidence            48999999999999999999999999999999999999999999988633  35554

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=97.80  E-value=4.5e-05  Score=61.35  Aligned_cols=53  Identities=26%  Similarity=0.372  Sum_probs=45.4

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++| |++||.|++|||..+.  +.+++...++. ...+.+.
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~   86 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQ   86 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEE
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEE
Confidence            4689999999999999999 9999999999999997  46788888876 4555554

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.80  E-value=4.8e-05  Score=74.66  Aligned_cols=60  Identities=32%  Similarity=0.566  Sum_probs=52.3

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQE   61 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v   61 (366)
                      |+.+...   +++++|..|.++|||+++| |++||.|++|||.++.+++.+++..+|++..++.
T Consensus        88 G~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~  150 (388)
T 1fc6_A           88 GLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQ  150 (388)
T ss_dssp             SEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCE
T ss_pred             EEEEEEeecCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCE
Confidence            4566554   5789999999999999999 9999999999999999999999999998765553

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.75  E-value=6.6e-05  Score=64.43  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=23.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +++|+|+|++||||||+++.|++..+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999998743

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=97.62  E-value=4.3e-05  Score=59.74  Aligned_cols=53  Identities=21%  Similarity=0.181  Sum_probs=43.9

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      ..+++|..|.++|||++ | |++||.|++|||..+.+  .+++...|...  ...+.+.
T Consensus         4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~   58 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVT   58 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEE
T ss_pred             CCcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEE
Confidence            46799999999999999 8 99999999999999975  47888888764  4455554

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=97.61  E-value=0.00012  Score=57.73  Aligned_cols=54  Identities=26%  Similarity=0.183  Sum_probs=43.4

Q ss_pred             eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         7 ~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      ...|++|..|.++|||+. | |++||.|++|||..+.+  .+++...|...  ...+.+.
T Consensus         5 ~~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~   60 (100)
T 3i18_A            5 TYDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKIN   60 (100)
T ss_dssp             CCCCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEE
T ss_pred             eCCCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEE
Confidence            467899999999999995 8 99999999999999865  47788888763  3344443

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=97.60  E-value=2.1e-05  Score=61.24  Aligned_cols=51  Identities=16%  Similarity=0.218  Sum_probs=41.9

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      |++|..|.++|||++ | |++||.|++|||..+.+  .+++...|...  ..++.+.
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~   54 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLK   54 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEE
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEE
Confidence            578889999999999 8 99999999999999975  57888888775  3344443

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.54  E-value=6e-05  Score=64.46  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=21.3

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHh
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      +++|+|+|++||||||+++.|++
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            46789999999999999999997

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.52  E-value=1.3e-05  Score=78.79  Aligned_cols=52  Identities=27%  Similarity=0.507  Sum_probs=0.0

Q ss_pred             EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +|..|.+||+|+++| |++||+|++|||.++.+.++++++.+|+...+.+++.
T Consensus       318 ~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~  369 (388)
T 3suz_A          318 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMK  369 (388)
T ss_dssp             -----------------------------------------------------
T ss_pred             EEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            788999999999999 9999999999999999999999999999988887765

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.51  E-value=0.00016  Score=57.98  Aligned_cols=53  Identities=17%  Similarity=0.315  Sum_probs=43.8

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++| |++||.|++|||..+.+  .+++...++. ...+.+.
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-g~~v~l~   86 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD--SSELQEAVLT-ESPLLLE   86 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEE
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEE
Confidence            4689999999999999999 99999999999999974  5777777753 4555554

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=97.50  E-value=0.00018  Score=59.86  Aligned_cols=53  Identities=21%  Similarity=0.112  Sum_probs=43.2

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      ..+++|..|.++|||+ +| |+.||.|++|||..+.+.  +++...+...  ...+.+.
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~  110 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKIT  110 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEE
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEE
Confidence            3689999999999999 99 999999999999999754  6777777664  3445544

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=97.47  E-value=0.00025  Score=60.96  Aligned_cols=51  Identities=29%  Similarity=0.318  Sum_probs=45.5

Q ss_pred             EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEE
Q psy16959         12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMT   63 (366)
Q Consensus        12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l   63 (366)
                      +|..+.++|||+++| |+.||.|++|||.++.+.+++.+...++.....+.+
T Consensus       110 ~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l  160 (166)
T 1w9e_A          110 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI  160 (166)
T ss_dssp             EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEE
T ss_pred             EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEE
Confidence            889999999999999 999999999999999999999988888776655544

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=97.46  E-value=0.00017  Score=56.44  Aligned_cols=50  Identities=24%  Similarity=0.359  Sum_probs=40.6

Q ss_pred             EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC--cEEEe
Q psy16959         12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG--QEMTM   64 (366)
Q Consensus        12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~--~v~l~   64 (366)
                      +|..|.++|||+++| |+.||+|++|||..+.+.  +++...|....+  .+.+.
T Consensus         5 ~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~   56 (95)
T 3id1_A            5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTIT   56 (95)
T ss_dssp             BEEEECTTSHHHHTT-CCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEE
T ss_pred             EEEeeCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEE
Confidence            688999999999999 999999999999999754  678777765433  44444

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.45  E-value=3e-05  Score=69.04  Aligned_cols=29  Identities=24%  Similarity=0.406  Sum_probs=23.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceee
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAI  135 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~  135 (366)
                      |+|+||+||||||+++.|++..+...++.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKYGIPHIST   31 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence            78999999999999999988754333333

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.42  E-value=3.8e-05  Score=68.27  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=20.8

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||||+++.|++..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999988754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.40  E-value=0.00063  Score=59.73  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=23.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++++|+|+|++||||||+++.|++..
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.38  E-value=7.4e-05  Score=64.53  Aligned_cols=27  Identities=15%  Similarity=0.359  Sum_probs=23.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ++++|+|+|++||||||++..|++..+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            557899999999999999999998643

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=97.37  E-value=0.00016  Score=55.61  Aligned_cols=51  Identities=18%  Similarity=0.264  Sum_probs=41.5

Q ss_pred             EEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEEe
Q psy16959         11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMTM   64 (366)
Q Consensus        11 i~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l~   64 (366)
                      ++|..|.++|||+++| |+.||.|++|||..+.+  .+++...+....+ .+.+.
T Consensus         6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~   57 (91)
T 2zpm_A            6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALE   57 (91)
T ss_dssp             CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEE
T ss_pred             eEEEEECCCChHHhcC-CCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEE
Confidence            4688999999999999 99999999999999975  5788888876543 44444

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.36  E-value=7.7e-05  Score=64.83  Aligned_cols=26  Identities=15%  Similarity=0.415  Sum_probs=22.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++.|+|+|++||||||+++.|++..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.36  E-value=0.00014  Score=61.58  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +.|+|+||+||||||+++.|++..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998743

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.35  E-value=0.00034  Score=69.65  Aligned_cols=53  Identities=25%  Similarity=0.338  Sum_probs=47.1

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||+|++|||..+.  +.+++..+++...+.+.+.
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~  415 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQ  415 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEE
Confidence            479999999999999999 9999999999999996  4589999998877776664

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=97.34  E-value=1e-05  Score=77.63  Aligned_cols=53  Identities=23%  Similarity=0.451  Sum_probs=49.0

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHccc
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE  291 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  291 (366)
                      -..||+||+|||.|..|+.+|+++++|+|+.||+++++++.+++||+++.++.
T Consensus        36 ~~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~   88 (337)
T 4dey_A           36 PVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKE   88 (337)
T ss_dssp             CCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESST
T ss_pred             CccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCC
Confidence            45799999999999999999999999999999999999999999999987653

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.33  E-value=1.3e-05  Score=76.20  Aligned_cols=46  Identities=33%  Similarity=0.775  Sum_probs=37.2

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChh---------hHHHHHccc
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN---------WWQAYREGE  291 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~  291 (366)
                      |++|||||+|+|.|..+.       +|+|++||+++++++.+++         ||++.+++.
T Consensus         2 gdsfyVRalfdy~~~~~~-------eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~   56 (308)
T 3kfv_A            2 GDSFYIRTHFELEPSPPS-------GLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGR   56 (308)
T ss_dssp             -CCEEEEECSCBCCCSSS-------BCCBCTTCEEEEEEC-------------CEEEEEECT
T ss_pred             CccEEEEEecCcCCCCcc-------cCCCccCCEEEEccccCCCcccccccCceEEEEecCC
Confidence            899999999999998665       8999999999999997666         999988754

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.32  E-value=7.8e-06  Score=80.52  Aligned_cols=101  Identities=21%  Similarity=0.321  Sum_probs=65.2

Q ss_pred             hhhhHHhcCCCeeeeeccccc---ccccccccCC-Cccccccceeccccccccccc-ccCCCeeeeeeecCCCCCCCCCc
Q psy16959        184 TKLDKLQAGIPTLNFDIYALT---ETWLTDEIND-PELGFSKFNVFRSDRTKQTSH-KSDGGGMHVIAHFDYDPEDDMYI  258 (366)
Q Consensus       184 ~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~G~glYirAl~~~~p~~d~~~  258 (366)
                      +...-|+.|..++.+|=..++   ...+...+.. .......+.+.|.+....... ...|.+||+||+|+|.|..+.  
T Consensus        44 A~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~~~~~~~~~~~~~~~vral~dy~~~~~~--  121 (391)
T 3tsz_A           44 AAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY--  121 (391)
T ss_dssp             HHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHGGGTSSCCSCCEEEEECSCBCCSSTT--
T ss_pred             HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCcccccccccccccccccccccccCCCCCC--
Confidence            333335667777766633332   2222222222 233445567777554443322 234899999999999986544  


Q ss_pred             chhhhccCccchhHHHHHhc---CChhhHHHHHccc
Q psy16959        259 PCKELGMSFQKGDILHVISQ---DDPNWWQAYREGE  291 (366)
Q Consensus       259 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~  291 (366)
                           +|+|++||+++++++   .+++||++++++.
T Consensus       122 -----~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~  152 (391)
T 3tsz_A          122 -----GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGK  152 (391)
T ss_dssp             -----BCCBCTTCEEEEEESSGGGSSSEEEEEEECG
T ss_pred             -----cceEccCCEEEEEeccCCCCCCeEEEEEeCC
Confidence                 899999999999999   6889999977654

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.32  E-value=0.00026  Score=73.29  Aligned_cols=60  Identities=23%  Similarity=0.242  Sum_probs=46.8

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~   64 (366)
                      |+.+...+++++|..|.++|||+++| |++||+|++|||..+..   ++...+++.  .+.++.+.
T Consensus       488 G~~~~~~~~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~---~~l~~~l~~~~~g~~v~l~  549 (597)
T 4fgm_A          488 GAKYKASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATE---QSVKRILERYIPGDTVTIH  549 (597)
T ss_dssp             SEEEEEETTEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCT---TTHHHHHTTCCTTCEEEEE
T ss_pred             ceEEeccCCeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCH---HHHHHHHHhcCCCCEEEEE
Confidence            56677777899999999999999999 99999999999999953   445555553  23455544

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.31  E-value=7.2e-05  Score=67.72  Aligned_cols=29  Identities=17%  Similarity=0.381  Sum_probs=25.0

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ...+++|+|+||+||||+|++.+|++..+
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            34667899999999999999999998753

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.31  E-value=0.00035  Score=62.55  Aligned_cols=54  Identities=24%  Similarity=0.289  Sum_probs=42.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCCC-CeEEEEcCEEcCCCCHHHHHHHHHc-CCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEG-DEILEINGIEIRGKSIHIVCDILVG-LTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~G-D~Il~VNg~~v~~~~~~~a~~~Lk~-~~~~v~l~   64 (366)
                      .|++|..|.++|||+++| |+.| |.|++|||..+.+...... .+++. ....+.+.
T Consensus        16 ~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~-~~~~~~~g~~v~l~   71 (209)
T 3rle_A           16 EGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLK-DLLKANVEKPVKML   71 (209)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHH-HHHHHTTTSCEEEE
T ss_pred             CEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHH-HHHhcCCCCEEEEE
Confidence            579999999999999999 9999 9999999999988764333 33333 34555555

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.30  E-value=0.00013  Score=63.22  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=22.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++.+|+|+|++||||||++..|++..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            45679999999999999999999864

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.30  E-value=0.00029  Score=53.91  Aligned_cols=52  Identities=15%  Similarity=0.290  Sum_probs=39.8

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      |+.|..+.++|||+++| |++||.|++|||..+.+.  +++..++...  ...+.+.
T Consensus        20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~   73 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLT   73 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEE
T ss_pred             EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence            56777788888889999 999999999999999754  6666677543  3344443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.29  E-value=8.5e-05  Score=67.49  Aligned_cols=39  Identities=13%  Similarity=0.154  Sum_probs=29.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK  143 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr  143 (366)
                      .+..|+|.||+||||||++..|++.... +..+ .+|+.|.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~-~~~~~p~   63 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV-IMTREPG   63 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE-EEECTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc-eeecCCC
Confidence            5578999999999999999999987543 3333 3455554

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.29  E-value=0.0004  Score=68.64  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=23.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+.+|+|+|++||||||+++.|++..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            56789999999999999999998764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.25  E-value=0.00013  Score=65.58  Aligned_cols=51  Identities=22%  Similarity=0.277  Sum_probs=33.1

Q ss_pred             HHHHHHHc--CCeEEEcccchhh---hccc----cCCCCc-EEEEEeCCCHHHHHHHHHhcC
Q psy16959        303 AIRTVVNA--GKICVLNLHPQSL---KILR----SSDLKP-FVIFVAPPPFELLKQKRIRRG  354 (366)
Q Consensus       303 ~i~~vir~--~k~~~l~~~p~~~---~~l~----~~~~~p-~vi~~~~~~~~~l~~~~~~r~  354 (366)
                      -++..+..  ++.+++++.|...   +.++    ..+..| .+|++. .+.+.+.+|+..|+
T Consensus        67 ~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~-~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           67 MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEIL-LPREVAKNRIMGRR  127 (223)
T ss_dssp             HHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEE-CCHHHHHHHHHTBC
T ss_pred             HHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEE-CCHHHHHHHHHccc
Confidence            34555555  8889999877542   2232    224455 455555 67899999999887

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.24  E-value=0.00049  Score=60.58  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=22.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+.+|+|+|++||||||+++.|++..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35679999999999999999999864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.09  E-value=0.00074  Score=59.21  Aligned_cols=26  Identities=27%  Similarity=0.557  Sum_probs=22.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+..|+|+|++||||||+++.|++..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44578999999999999999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.09  E-value=0.00034  Score=65.31  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=21.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +++|+|+|++||||||+++.|++.
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999999975

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=97.06  E-value=0.0014  Score=53.88  Aligned_cols=54  Identities=24%  Similarity=0.200  Sum_probs=43.3

Q ss_pred             eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc-C-CCcEEEe
Q psy16959          7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG-L-TGQEMTM   64 (366)
Q Consensus         7 ~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~-~-~~~v~l~   64 (366)
                      ...+++|..|.++|||+++  |+.||.|++|||..+.+.  +++...+.. . ...+.+.
T Consensus        23 ~~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~   78 (125)
T 2hga_A           23 QPDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINIT   78 (125)
T ss_dssp             CCCCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEE
T ss_pred             CCCceEEEEECCCChHHHh--cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence            3568999999999999998  999999999999999754  677777764 2 3444554

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.06  E-value=0.00042  Score=60.76  Aligned_cols=27  Identities=22%  Similarity=0.463  Sum_probs=23.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .++.|+|+|++||||||+++.|++..+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            456789999999999999999997753

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.05  E-value=0.0013  Score=52.13  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=37.8

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~   64 (366)
                      |+.|....++|||+++| |++||.|++|||..+.+..  ++..++..  ....+.+.
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~   91 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLT   91 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEE
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEE
Confidence            45567777777889999 9999999999999998774  44455543  23455544

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.04  E-value=0.0018  Score=61.56  Aligned_cols=53  Identities=15%  Similarity=0.192  Sum_probs=44.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc-CC-CcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG-LT-GQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~-~~-~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++||.|++|||..+.+  .+++...|+. .. ..+.+.
T Consensus       244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~  298 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVV  298 (318)
T ss_dssp             CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEE
T ss_pred             CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEE
Confidence            689999999999999999 99999999999999975  4778888875 33 444544

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.00  E-value=1.7e-05  Score=79.71  Aligned_cols=102  Identities=22%  Similarity=0.324  Sum_probs=65.8

Q ss_pred             hhhhhHHhcCCCeeeeeccccc---ccccccccCC-Cccccccceeccccccccccccc-CCCeeeeeeecCCCCCCCCC
Q psy16959        183 RTKLDKLQAGIPTLNFDIYALT---ETWLTDEIND-PELGFSKFNVFRSDRTKQTSHKS-DGGGMHVIAHFDYDPEDDMY  257 (366)
Q Consensus       183 ~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~G~glYirAl~~~~p~~d~~  257 (366)
                      ++...-|+.|..++.+|=..+.   ...+...+.. +......+.+.|.+........+ .|++||+||+|+|.|..+. 
T Consensus        35 pA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~~~~~~~~~~~g~s~yVralfdy~~~~~~-  113 (468)
T 3shw_A           35 PAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY-  113 (468)
T ss_dssp             HHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHHHHHHHTCCCCEEEEECSCBCCSSTT-
T ss_pred             HHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCccchhhhccccccccccccccCcCCCCCC-
Confidence            3333335667777776633332   2223333322 23445556777755443332222 3899999999999887643 


Q ss_pred             cchhhhccCccchhHHHHHhc---CChhhHHHHHccc
Q psy16959        258 IPCKELGMSFQKGDILHVISQ---DDPNWWQAYREGE  291 (366)
Q Consensus       258 ~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~  291 (366)
                            +|+|++||+++++++   .+++||++++++.
T Consensus       114 ------~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~  144 (468)
T 3shw_A          114 ------GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGK  144 (468)
T ss_dssp             ------BCCBCTTCEEEEEESSGGGCTTEEEEEEECT
T ss_pred             ------CceEccCCEEEEeecccCCCCCeEEEEEcCC
Confidence                  899999999999999   6889999987654

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=96.99  E-value=0.0014  Score=62.42  Aligned_cols=61  Identities=16%  Similarity=0.245  Sum_probs=47.0

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      |+.+...  ..+++|..|.++|||+++| |+.||+|++|||..+.+.  .+....+...  ..++.+.
T Consensus       232 Gi~~~~~~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~  296 (324)
T 1y8t_A          232 GVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALT  296 (324)
T ss_dssp             CEEEESCSSSSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEE
T ss_pred             ceEeeeccCCCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence            4555432  4689999999999999999 999999999999999754  6777777653  3444544

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.97  E-value=2.8e-05  Score=70.88  Aligned_cols=40  Identities=13%  Similarity=0.104  Sum_probs=26.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCc----ceeeeccCCCCC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRF----AAAIPHTSRPMK  143 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~----~~~~~~tTr~pr  143 (366)
                      .+..|+|.||+||||||++..|++.....    +..+ .+||.|+
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~   67 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPG   67 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCC
Confidence            35679999999999999999999864322    3333 3677774

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=96.92  E-value=0.0014  Score=63.22  Aligned_cols=53  Identities=19%  Similarity=0.254  Sum_probs=44.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      .|++|..|.++|||+++| |++||+|++|||..+.  +.++....+...  ..++.+.
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~  317 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLG  317 (345)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEE
T ss_pred             ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEE
Confidence            689999999999999999 9999999999999997  457888888663  3444443

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=96.90  E-value=0.00057  Score=67.41  Aligned_cols=50  Identities=32%  Similarity=0.420  Sum_probs=40.9

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEE
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMT   63 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l   63 (366)
                      .++|..|.+||||+++| |++||+|++|||..+.+..   +..++++...++++
T Consensus        91 ~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l  140 (403)
T 3k50_A           91 NALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQI  140 (403)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEE
T ss_pred             eEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhCCCCEEEE
Confidence            47899999999999999 9999999999999998885   55667663333343

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=96.88  E-value=0.001  Score=66.50  Aligned_cols=53  Identities=17%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .|++|..|.++|||+++| |++||.|++|||..+.+  .+++..+|+.....+.+.
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~  438 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQ  438 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEE
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEE
Confidence            478999999999999999 99999999999999975  588999998866666654

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.87  E-value=0.001  Score=59.46  Aligned_cols=24  Identities=29%  Similarity=0.681  Sum_probs=21.4

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .|+|+||+||||+|++.+|++..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999998753

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=96.81  E-value=0.0016  Score=65.20  Aligned_cols=53  Identities=25%  Similarity=0.281  Sum_probs=43.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      .|++|..|.++|||+++| |+.||+|++|||..+.+.  +++...+...  ..++.+.
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~  336 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKII  336 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEE
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence            689999999999999999 999999999999999765  6677766642  3444444

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=96.81  E-value=0.0021  Score=61.37  Aligned_cols=52  Identities=27%  Similarity=0.382  Sum_probs=44.5

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .|++|..|.++|||+++| |+.||.|++|||..+.+  .++....++. ...+.+.
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~  307 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQ  307 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEE
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEE
Confidence            589999999999999999 99999999999999964  5788888876 4555554

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=96.79  E-value=0.00082  Score=60.09  Aligned_cols=52  Identities=13%  Similarity=0.079  Sum_probs=41.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCC-CCeEEEEcCEEcCCCCHHHHHHHHHcCC-CcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHE-GDEILEINGIEIRGKSIHIVCDILVGLT-GQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~-GD~Il~VNg~~v~~~~~~~a~~~Lk~~~-~~v~l~   64 (366)
                      .+++|..|.++|||+++| |++ ||.|++|||. +.+  .++....++... .++.+.
T Consensus       112 ~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~--~~~l~~~l~~~~g~~v~l~  165 (209)
T 3rle_A          112 NVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNE--SEDLFSLIETHEAKPLKLY  165 (209)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCS--SSCHHHHHHHTTTSCEEEE
T ss_pred             cceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCC--HHHHHHHHHhCCCCeEEEE
Confidence            689999999999999999 999 9999999997 543  456667776653 445554

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=96.79  E-value=0.0015  Score=64.98  Aligned_cols=53  Identities=17%  Similarity=0.216  Sum_probs=42.9

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      .|++|..|.++|||+++| |+.||+|++|||..+.+.  +++...+...  ...+.+.
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~  317 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLG  317 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence            689999999999999999 999999999999999865  5565555532  3455554

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.73  E-value=0.007  Score=53.76  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=21.5

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..|+|.|++||||||++..|++..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999875

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.72  E-value=0.00049  Score=61.47  Aligned_cols=64  Identities=14%  Similarity=0.089  Sum_probs=44.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceee---------e---ccCCCCCCCCCCCcceee----cCHHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAI---------P---HTSRPMKDGEVDGQDYHF----ITRAQFELDILA  166 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~---------~---~tTr~pr~~E~~g~~y~~----vs~~ef~~~~~~  166 (366)
                      ..+.|+|+||||+|||+|+..|+++...+ ++.         +   .-|++|.      ++||+    ++..++.+.+..
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~~i-IsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~~f~~  105 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGHRL-IADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMNLFGA  105 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTCEE-EESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHHHHCT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCCeE-EecchhheeecCCceEEEECCcc------ccccccccceeEEcccccCCH
Confidence            35779999999999999999999864311 111         1   1245543      66777    777777778888


Q ss_pred             cceeEEE
Q psy16959        167 RKFIEHG  173 (366)
Q Consensus       167 g~fle~~  173 (366)
                      +.|...+
T Consensus       106 ~~f~~~a  112 (205)
T 2qmh_A          106 GAVREDT  112 (205)
T ss_dssp             TSBCSCC
T ss_pred             HHHHhcC
Confidence            8775543

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=96.68  E-value=0.0017  Score=62.59  Aligned_cols=53  Identities=25%  Similarity=0.314  Sum_probs=44.1

Q ss_pred             CeEEEEEEcCCchhcccCCCCC-----------CCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHE-----------GDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~-----------GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~   64 (366)
                      .|++|..|.++|||+++| |+.           ||+|++|||..+.+.  +++...|...  ..++.+.
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~  316 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVE  316 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEE
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEE
Confidence            589999999999999999 998           999999999999866  6788888543  3455554

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.40  E-value=0.0008  Score=59.73  Aligned_cols=22  Identities=36%  Similarity=0.603  Sum_probs=20.4

Q ss_pred             EEEeCCCCCChHHHHHHHHhcc
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+|+|++||||||++..|++..
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.39  E-value=0.0066  Score=66.19  Aligned_cols=61  Identities=20%  Similarity=0.277  Sum_probs=51.0

Q ss_pred             CcEEEEeCCeEEEEEEcCC--------chhcccC-CCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKG--------GLADRTG-LLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~g--------s~A~~~G-~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+.+...+++++|..+.+|        |||+++| .|+ ||+|++|||..+.++.  ++..+|++..|+.+.+
T Consensus       740 G~~~~~~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l  809 (1045)
T 1k32_A          740 ACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARI  809 (1045)
T ss_dssp             SEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEE
T ss_pred             cEEEEEeCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEE
Confidence            5667767889999999998        9999999 388 9999999999999886  7788888876655443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.16  E-value=0.0014  Score=57.01  Aligned_cols=44  Identities=11%  Similarity=0.046  Sum_probs=27.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEV  147 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~  147 (366)
                      .+.++|+||+|||||||+..|..........+..++..++..++
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~i   49 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDV   49 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcccc
Confidence            46789999999999999999986532223333344444544433

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.06  E-value=0.0037  Score=52.97  Aligned_cols=26  Identities=35%  Similarity=0.652  Sum_probs=22.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++..|+|+||+||||||+++.|+...
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999999764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.97  E-value=0.0033  Score=53.94  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++.|+|+||+||||||+++.|++..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999999864

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=95.94  E-value=0.0012  Score=65.87  Aligned_cols=53  Identities=25%  Similarity=0.314  Sum_probs=0.0

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |+.||.|++|||..+.  +.+++..+|+...+.+.+.
T Consensus       383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~v~l~  435 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALN  435 (448)
T ss_dssp             --------------------------------------------------------
T ss_pred             CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHcCCCeEEEE
Confidence            578999999999999999 9999999999999997  4578888887766655443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.93  E-value=0.0034  Score=54.09  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=23.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+.+++|+||+|||||||++.|+..+
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence            45689999999999999999999764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.92  E-value=0.0022  Score=56.25  Aligned_cols=40  Identities=15%  Similarity=0.087  Sum_probs=28.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK  143 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr  143 (366)
                      .+..|+|+|++||||||++..|++..+...+.+ .+++.|.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~~   48 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFPN   48 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESSC
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecCC
Confidence            356799999999999999999998633223333 3355553

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.92  E-value=0.0023  Score=54.91  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +.|+|.|++||||||+++.|++..+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999998643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.92  E-value=0.0047  Score=52.91  Aligned_cols=26  Identities=31%  Similarity=0.517  Sum_probs=23.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++.|+|+|++||||||+++.|++..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999999774

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=95.88  E-value=0.0014  Score=62.77  Aligned_cols=53  Identities=23%  Similarity=0.281  Sum_probs=0.0

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..+++|..|.++|||+++| |+.||+|++|||..+.+  .+++...++. ..++.+.
T Consensus       253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~  305 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVS--ANDVSDVIKR-ESTLNMV  305 (332)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEE
Confidence            3578999999999999999 99999999999999964  4566666654 3444443

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.80  E-value=0.0046  Score=51.80  Aligned_cols=23  Identities=26%  Similarity=0.586  Sum_probs=20.1

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+|+|+||+||||||+++.| +..
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC
Confidence            46889999999999999999 543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.65  E-value=0.0027  Score=56.53  Aligned_cols=33  Identities=9%  Similarity=0.163  Sum_probs=25.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceee
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAI  135 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~  135 (366)
                      .+..|+|+||+||||||+++.|++..+...+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~   36 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA   36 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence            346799999999999999999998754333333

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.64  E-value=0.0045  Score=52.86  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=18.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+..|+|+|++||||||+++.|++..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            356799999999999999999997643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.63  E-value=0.0061  Score=52.17  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +.+|+|.||+||||||+++.|++..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999999864

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=95.62  E-value=0.00026  Score=66.96  Aligned_cols=48  Identities=44%  Similarity=0.760  Sum_probs=41.9

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcc
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG  290 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  290 (366)
                      +||++|+|||.|..++.+|  ..+|+|++||+++++++.+++||++++.+
T Consensus         1 s~~vrAlydy~~~~~~~~p--~~eLsf~~GDil~V~~~~d~~WW~a~~~~   48 (295)
T 1kjw_A            1 GFYIRALFDYDKTKDCGFL--SQALSFRFGDVLHVIDAGDEEWWQARRVH   48 (295)
T ss_dssp             CEEEEESSCBCHHHHHCCC--SSBCCBCTTCEEEEEECCSSSEEEEEECC
T ss_pred             CEEEEEeeccCCCCCCCCC--CcCCcCCCCCEEEEEEeCCCCeEEEEECC
Confidence            5899999999988777666  34999999999999999999999997664

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.60  E-value=0.0066  Score=53.09  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=23.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..+.|+|+||+||||||+++.|++..
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999999764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.59  E-value=0.0063  Score=52.20  Aligned_cols=25  Identities=28%  Similarity=0.500  Sum_probs=22.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..|+|+|++||||||++..|++..
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3579999999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.58  E-value=0.0047  Score=53.54  Aligned_cols=24  Identities=13%  Similarity=0.241  Sum_probs=21.3

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+.|+|++|||||||+.+|+..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            357889999999999999999875

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=95.56  E-value=0.0019  Score=46.20  Aligned_cols=42  Identities=19%  Similarity=0.590  Sum_probs=35.0

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +|-.+||+++|.|..++.      +|+|+.||++.++++.+++||..+
T Consensus         2 sg~~~rAlydy~~~~~~e------~Ls~~~Gd~i~v~~~~~~~Ww~g~   43 (60)
T 2lx7_A            2 SGARCRTLYPFSGERHGQ------GLRFAAGELITLLQVPDGGWWEGE   43 (60)
T ss_dssp             CSCEEEESCCCCSCCCSS------CCCCCTTCEEEBSCCCTTSCEEEE
T ss_pred             CCCEEEECcccCCCCCCC------CccCCCCCEEEEeEecCCCeEEEE
Confidence            356789999999887651      499999999999999888998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.54  E-value=0.0072  Score=52.90  Aligned_cols=26  Identities=15%  Similarity=0.477  Sum_probs=23.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+.+++|+||+|||||||++.|+...
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            45789999999999999999998764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.54  E-value=0.0063  Score=53.26  Aligned_cols=25  Identities=20%  Similarity=0.161  Sum_probs=22.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+|+|+||+|||||||++.|+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999875

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.52  E-value=0.0052  Score=53.02  Aligned_cols=23  Identities=22%  Similarity=0.564  Sum_probs=20.7

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+++|+||+|+||||+++.|+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcc
Confidence            57899999999999999999863

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.47  E-value=0.0085  Score=50.59  Aligned_cols=25  Identities=20%  Similarity=0.426  Sum_probs=22.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+.|+|+|++||||||+++.|++..
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.47  E-value=0.0086  Score=51.71  Aligned_cols=25  Identities=16%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..|+|+|++||||||+++.|++.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999999999987

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.37  E-value=0.0074  Score=51.76  Aligned_cols=25  Identities=20%  Similarity=0.408  Sum_probs=22.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..|+|.|++||||||+++.|++..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999999764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.34  E-value=0.012  Score=51.17  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=23.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +..|+|.|++||||||++..|++...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l~   29 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESIP   29 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHC
Confidence            46799999999999999999998753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.31  E-value=0.065  Score=48.63  Aligned_cols=43  Identities=12%  Similarity=0.311  Sum_probs=28.9

Q ss_pred             CeEEEcccchhhh---ccccCCCCc-EEEEEeCCCHHHHHHHHHhcCC
Q psy16959        312 KICVLNLHPQSLK---ILRSSDLKP-FVIFVAPPPFELLKQKRIRRGD  355 (366)
Q Consensus       312 k~~~l~~~p~~~~---~l~~~~~~p-~vi~~~~~~~~~l~~~~~~r~~  355 (366)
                      +-++||+-|....   .+......| .||++. .+.+.+.+|+..|.-
T Consensus        87 ~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ld-vp~e~l~~Rl~~R~~  133 (230)
T 3gmt_A           87 NGYLFDGFPRTIAQADAMKEAGVAIDYVLEID-VPFSEIIERMSGRRT  133 (230)
T ss_dssp             TCEEEESCCCSHHHHHHHHHTTCCCSEEEEEC-CCHHHHHHHHHTEEE
T ss_pred             CCeEecCCCCcHHHHHHHHHhCCCccEEEEEe-CCHHHHHHHHHcCCc
Confidence            4578999885543   333333444 556655 778999999999963

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.29  E-value=0.0092  Score=52.60  Aligned_cols=26  Identities=23%  Similarity=0.441  Sum_probs=22.3

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.++.|+||+|||||||++.|+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999999864

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.27  E-value=0.0099  Score=50.49  Aligned_cols=25  Identities=16%  Similarity=0.306  Sum_probs=22.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..++|+||+||||||+++.|+...
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            4678999999999999999998754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.25  E-value=0.01  Score=51.93  Aligned_cols=28  Identities=21%  Similarity=0.264  Sum_probs=23.7

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ...+.+|.|+|++||||||++..|++..
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3445678999999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.22  E-value=0.0097  Score=50.69  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=21.7

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +.|+|+||+||||||+++.|++..
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468999999999999999999864

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=95.17  E-value=0.0031  Score=44.13  Aligned_cols=42  Identities=33%  Similarity=0.782  Sum_probs=36.4

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |.+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         1 gp~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~   42 (58)
T 2drm_A            1 GPGIQVKALYDYDAQTGD-------ELTFKEGDTIIVHQKDPAGWWEGE   42 (58)
T ss_dssp             CCCEEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEE
T ss_pred             CCCcEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCEEEEE
Confidence            678899999999998776       799999999999999888888653

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=95.17  E-value=0.0067  Score=60.50  Aligned_cols=53  Identities=19%  Similarity=0.233  Sum_probs=43.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~   64 (366)
                      .+++|..|.++|||+++| |+.||+|++|||..+.+.  .++...+..  ...++.+.
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~  340 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLG  340 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEE
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence            589999999999999999 999999999999999876  567767754  24445444

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.11  E-value=0.01  Score=51.61  Aligned_cols=26  Identities=15%  Similarity=0.077  Sum_probs=22.7

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +..|+|.|++||||||++..|++..+
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            35789999999999999999998643

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.08  E-value=0.009  Score=51.58  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..|+|+|++||||||++..|++..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999999874

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.05  E-value=0.013  Score=52.88  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=22.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..++|+||+||||||+++.|++..
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999999654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.02  E-value=0.0079  Score=53.86  Aligned_cols=39  Identities=21%  Similarity=0.230  Sum_probs=29.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK  143 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr  143 (366)
                      +..|+|.|++||||||++..|++.....+..+ .+||.|.
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~   44 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPG   44 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCC
Confidence            46789999999999999999998644334444 4667774

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=95.02  E-value=0.0031  Score=45.57  Aligned_cols=42  Identities=36%  Similarity=0.771  Sum_probs=36.1

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |...+++|+++|.+..++       +|+|+.||++.++.+.+.+||..+
T Consensus         1 g~~~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~   42 (65)
T 1b07_A            1 GSAEYVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAE   42 (65)
T ss_dssp             -CCCEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEE
T ss_pred             CCceEEEECCcCCCCCCC-------ccCCcCCCEEEEEEecCCCeEEEE
Confidence            456789999999988776       899999999999999888998774

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.02  E-value=0.013  Score=51.77  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..|.|+||+||||||+++.|++..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999998753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.01  E-value=0.0099  Score=53.02  Aligned_cols=26  Identities=19%  Similarity=0.418  Sum_probs=22.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +..|+|.|++||||||+++.|++..+
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46789999999999999999998754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.98  E-value=0.01  Score=50.81  Aligned_cols=25  Identities=24%  Similarity=0.656  Sum_probs=22.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..|+|+|++||||||+++.|++..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999999764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.97  E-value=0.012  Score=50.33  Aligned_cols=25  Identities=20%  Similarity=0.570  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++.++|+||+|+|||+|++.++..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.96  E-value=0.0066  Score=55.37  Aligned_cols=41  Identities=17%  Similarity=0.140  Sum_probs=31.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK  143 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr  143 (366)
                      .+.+|+|.|++||||||++..|++.....+.....+||.|+
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~   66 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG   66 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence            35689999999999999999999864433444345677774

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.95  E-value=0.012  Score=51.38  Aligned_cols=22  Identities=14%  Similarity=0.206  Sum_probs=20.2

Q ss_pred             CcEEEeCCCCCChHHHHHHHHh
Q psy16959        105 RPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+|.|+||+||||||+++.|++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999986

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=94.93  E-value=0.0042  Score=46.11  Aligned_cols=46  Identities=33%  Similarity=0.647  Sum_probs=39.8

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE  289 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  289 (366)
                      ++..+-|++|+++|.+..++       +|+|+.||++.++.+.+..||.....
T Consensus         3 ~~~~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~   48 (77)
T 2d8j_A            3 SGSSGQYFVALFDYQARTAE-------DLSFRAGDKLQVLDTSHEGWWLARHL   48 (77)
T ss_dssp             SSSCCEEEEESSCBCCSSSS-------BCCBCTTCCEEEEECCSSSEEEEEEC
T ss_pred             CCCCCCEEEEccCCCCCCCC-------ccCCCCCCEEEEEECCCCCeEEEEEC
Confidence            56678899999999998776       79999999999999988899987554

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.89  E-value=0.014  Score=53.27  Aligned_cols=28  Identities=14%  Similarity=0.261  Sum_probs=23.8

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ..+..|+|+||+||||||++..|++..+
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3456789999999999999999998643

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.85  E-value=0.012  Score=50.87  Aligned_cols=25  Identities=16%  Similarity=0.062  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+|.|+|++||||||+++.|++.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4467899999999999999999976

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.82  E-value=0.0037  Score=54.85  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +|+|.|++||||||++..|++...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999997643

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=94.81  E-value=0.015  Score=57.65  Aligned_cols=53  Identities=30%  Similarity=0.663  Sum_probs=33.4

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHH
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRA  158 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~  158 (366)
                      -++|+|++|||||||..+|...........+.||+.+..+.  .+|.++.+++..
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~  236 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA  236 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCS
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECC
Confidence            47899999999999999998653333445667788776553  366666666543

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.78  E-value=0.016  Score=51.29  Aligned_cols=26  Identities=35%  Similarity=0.535  Sum_probs=22.7

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +..|+|+|++||||||++..|++..+
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45789999999999999999998653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.69  E-value=0.013  Score=51.42  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=21.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.++.|+||+|||||||++.|+..
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457889999999999999999875

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=94.69  E-value=0.0043  Score=45.04  Aligned_cols=41  Identities=24%  Similarity=0.528  Sum_probs=35.8

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +.+.+||+++|.|..++       +|+|+.||++.++.+.+..||...
T Consensus         5 ~~~~~~Alydy~a~~~~-------ELs~~~Gd~i~v~~~~~~gWw~g~   45 (65)
T 2lj0_A            5 DLFSYQALYSYIPQNDD-------ELELRDGDIVDVMEKCDDGWFVGT   45 (65)
T ss_dssp             SSCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEE
T ss_pred             cCEEEEEceeECCCCcC-------CcCCCCCCEEEEeEeCCCCEEEEE
Confidence            45678999999998877       899999999999999888998753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.63  E-value=0.018  Score=48.43  Aligned_cols=25  Identities=32%  Similarity=0.583  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++.++|+||+|+|||+++..+++.
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999875

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.62  E-value=0.0055  Score=45.83  Aligned_cols=45  Identities=22%  Similarity=0.551  Sum_probs=38.7

Q ss_pred             ccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       236 ~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .+++.+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         2 s~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   46 (79)
T 2yun_A            2 SSGSSGRLCKALYSFQARQDD-------ELNLEKGDIVIIHEKKEEGWWFGS   46 (79)
T ss_dssp             CSCCCSEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSCEEEE
T ss_pred             CCCCCCCEEEECccCCcCCCC-------CcCCCCCCEEEEEEcCCCCEEEEE
Confidence            357788999999999988766       899999999999998888888764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.58  E-value=0.017  Score=52.57  Aligned_cols=26  Identities=15%  Similarity=0.164  Sum_probs=22.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+.+|.|+|++||||||++..|++..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34568899999999999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=94.56  E-value=0.016  Score=49.45  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=19.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHH
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      .+.++.|+||+|||||||++.+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc
Confidence            35678999999999999999754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.52  E-value=0.018  Score=49.67  Aligned_cols=24  Identities=13%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .|+|.|++||||||+++.|++..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            588999999999999999998653

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.43  E-value=0.0073  Score=44.85  Aligned_cols=51  Identities=27%  Similarity=0.477  Sum_probs=41.0

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCCh-hhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-NWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~  287 (366)
                      ++..+.+++|+++|.+..+...++..-+|+|+.||++.++.+.+. .||..+
T Consensus         3 ~~~~~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~   54 (76)
T 2csi_A            3 SGSSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGE   54 (76)
T ss_dssp             CCCCSEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEE
T ss_pred             CCCCccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEE
Confidence            356778999999999988666666666999999999999998765 577653

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.40  E-value=0.01  Score=53.71  Aligned_cols=41  Identities=15%  Similarity=0.065  Sum_probs=31.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCC-cceeeeccCCCCC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDR-FAAAIPHTSRPMK  143 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~-~~~~~~~tTr~pr  143 (366)
                      .+..|+|.|++||||||++..|.+.... .+..+..+||.|.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~   61 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG   61 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence            4568899999999999999999986543 3445555577775

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=94.36  E-value=0.021  Score=49.46  Aligned_cols=22  Identities=27%  Similarity=0.738  Sum_probs=19.6

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.|+||+|+|||||++.|+..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999865

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.36  E-value=0.023  Score=49.26  Aligned_cols=24  Identities=17%  Similarity=0.368  Sum_probs=21.5

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++|.|+|++||||||++..|++..
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            478899999999999999999864

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=94.34  E-value=0.067  Score=54.51  Aligned_cols=53  Identities=19%  Similarity=0.291  Sum_probs=47.2

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|+.|.++++|...| ++.||+|++|||+.+.++  .+..++|+.+++....+
T Consensus       415 ~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~  467 (539)
T 4fln_A          415 QIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVF  467 (539)
T ss_dssp             CCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEE
T ss_pred             eEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEE
Confidence            579999999999999999 999999999999999755  78899999988876554

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=94.34  E-value=0.0065  Score=44.13  Aligned_cols=41  Identities=34%  Similarity=0.562  Sum_probs=35.1

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC---ChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD---DPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~  287 (366)
                      .|++++|+++|.+..++       +|+|+.||++.++.+.   +..||..+
T Consensus         2 ~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~~Ww~g~   45 (69)
T 1wyx_A            2 LNVLAKALYDNVAESPD-------ELSFRKGDIMTVLEQDTQGLDGWWLCS   45 (69)
T ss_dssp             CEEEEEESSCBCCSSTT-------BCCBCTTCEEEEEETTGGGCTTEEEEE
T ss_pred             CCEEEEECccCCcCCCC-------ccCCcCCCEEEEeECCCCCCCCcEEEE
Confidence            37899999999988776       8999999999999987   67888763

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=94.32  E-value=0.023  Score=49.40  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=21.3

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ++++|+||+|+|||+|+..++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999999865

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.29  E-value=0.024  Score=50.76  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=22.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+..|+|.|++||||||+++.|++..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44568999999999999999999875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=94.26  E-value=0.033  Score=50.15  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=23.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++.++|+||+|+|||++++.+++..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            45779999999999999999998764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.26  E-value=0.026  Score=48.48  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+|+|+|++||||||++..|++.
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.26  E-value=0.023  Score=48.57  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .|+|+|++||||||+++.|++..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999854

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.25  E-value=0.028  Score=52.47  Aligned_cols=27  Identities=7%  Similarity=0.011  Sum_probs=23.1

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..++.++|.||+|+|||+|++.+++..
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345678899999999999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.24  E-value=0.031  Score=45.88  Aligned_cols=22  Identities=36%  Similarity=0.854  Sum_probs=19.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhcc
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+|+|++|||||+|..+|....
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998753

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.22  E-value=0.026  Score=51.44  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ...|.|+||+|||||||++.|++..
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578999999999999999999764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.21  E-value=0.032  Score=46.22  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=22.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...+|+|.||+|+||+++++.+.+.
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.19  E-value=0.023  Score=52.06  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=21.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +.+|+|+|++||||||++..|++.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            457899999999999999999975

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=94.15  E-value=0.027  Score=49.64  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..++++|+||+|+|||+++..+++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999864

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.13  E-value=0.008  Score=43.57  Aligned_cols=44  Identities=20%  Similarity=0.693  Sum_probs=37.7

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      ++..+-+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         3 s~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   46 (68)
T 2dl4_A            3 SGSSGNTYVALYKFVPQENE-------DLEMRPGDIITLLEDSNEDWWKGK   46 (68)
T ss_dssp             TCSCCCEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCCSSEEEEE
T ss_pred             CCCCCCEEEEeeeECCCCcC-------CcCCCCCCEEEEEEeCCCCEEEEE
Confidence            45667789999999988766       899999999999999888888764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.11  E-value=0.026  Score=49.72  Aligned_cols=23  Identities=13%  Similarity=0.294  Sum_probs=20.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHh
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      +.+|+|+|++||||||+++.|++
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999987

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.09  E-value=0.022  Score=49.61  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             CcEEEeCCCCCChHHHHHHHHh
Q psy16959        105 RPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..|+|+|++||||||+++.|++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3688999999999999999997

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.08  E-value=0.0089  Score=43.31  Aligned_cols=42  Identities=21%  Similarity=0.450  Sum_probs=36.0

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      +..+-|++|+++|.+..++       +|+|+.||++.++.+.+..||..
T Consensus         4 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g   45 (68)
T 2dmo_A            4 GSSGEAHRVLFGFVPETKE-------ELQVMPGNIVFVLKKGNDNWATV   45 (68)
T ss_dssp             CCCSEEEEECSSCCCCSSS-------SCCCCTTCEEEECEECSSSCEEE
T ss_pred             CCCCCEEEECcCCCcCCcC-------CCCCCCCCEEEEEEeCCCCEEEE
Confidence            3456789999999988776       79999999999999988888855

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.08  E-value=0.025  Score=47.52  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...+++|+||+|+|||+|++.++..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=94.07  E-value=0.022  Score=47.99  Aligned_cols=25  Identities=24%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++.++|+||+|+|||+++..+++.
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999999875

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.07  E-value=0.009  Score=43.94  Aligned_cols=44  Identities=25%  Similarity=0.648  Sum_probs=37.0

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC--ChhhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~  287 (366)
                      +++.+.+++|+++|.+..++       +|+|++||++.++.+.  +..||..+
T Consensus         3 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~   48 (73)
T 2dm1_A            3 SGSSGGTAVARYNFAARDMR-------ELSLREGDVVRIYSRIGGDQGWWKGE   48 (73)
T ss_dssp             CCCSSSEEEESSCBCCCSTT-------BCCBCTTCEEECCBSSSSSSSCEEEE
T ss_pred             CCCCCCEEEECccCCcCCCC-------cCCCCCCCEEEEEEecCCCCCeEEEE
Confidence            56788999999999988766       8999999999999986  44787663

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.04  E-value=0.029  Score=52.59  Aligned_cols=26  Identities=15%  Similarity=0.198  Sum_probs=21.9

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.+|.|+||+|||||||+..|...
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34456789999999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=93.98  E-value=0.028  Score=47.95  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +..|+|+|++||||||+++.|++.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.98  E-value=0.033  Score=52.60  Aligned_cols=24  Identities=17%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+.++.|+||+||||||++..|+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            456899999999999999999985

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.97  E-value=0.028  Score=50.88  Aligned_cols=26  Identities=15%  Similarity=0.267  Sum_probs=22.5

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++.|+||+|||||||++.|+-.
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            35678999999999999999999853

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=93.93  E-value=0.03  Score=46.91  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .|+|+|++||||||+++.|++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=93.93  E-value=0.025  Score=49.53  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=21.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.++.|+||+||||||++..|...
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999864

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=93.92  E-value=0.0099  Score=42.93  Aligned_cols=44  Identities=32%  Similarity=0.563  Sum_probs=37.3

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      ++..+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         3 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~   46 (68)
T 2dl3_A            3 SGSSGRPARAKFDFKAQTLK-------ELPLQKGDIVYIYKQIDQNWYEGE   46 (68)
T ss_dssp             CSCCSEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSTTEEEEE
T ss_pred             CCCCCcEEEECccCCCCCcC-------CccCCCCCEEEEeEecCCCEEEEE
Confidence            34567899999999988776       799999999999998888888764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=93.92  E-value=0.028  Score=51.16  Aligned_cols=25  Identities=16%  Similarity=0.326  Sum_probs=22.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..|.|.||+||||||+++.|++..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999999764

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=93.89  E-value=0.0071  Score=42.76  Aligned_cols=41  Identities=27%  Similarity=0.606  Sum_probs=35.1

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      +.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+.
T Consensus         3 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~   43 (61)
T 1y0m_A            3 KSAVKALFDYKAQRED-------ELTFTKSAIIQNVEKQDGGWWRGDY   43 (61)
T ss_dssp             CCCEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             CCEEEECcCCCcCCCC-------CcCCcCCCEEEEEEecCCCEEEEEE
Confidence            5688999999988776       8999999999999998888887643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=93.89  E-value=0.037  Score=46.80  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=20.0

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -|+|+|++|||||||..+|...
T Consensus         6 ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.89  E-value=0.031  Score=52.92  Aligned_cols=26  Identities=15%  Similarity=0.080  Sum_probs=22.1

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.++.|+||+|||||||++.|+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            34567889999999999999999863

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.86  E-value=0.033  Score=47.34  Aligned_cols=26  Identities=15%  Similarity=0.308  Sum_probs=22.4

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++.|+||+|+|||||++.|+..
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999999864

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=93.85  E-value=0.01  Score=43.01  Aligned_cols=43  Identities=26%  Similarity=0.665  Sum_probs=36.9

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +..+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         4 ~~~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   46 (69)
T 2eqi_A            4 GSSGRTVKALYDYKAKRSD-------ELTFCRGALIHNVSKEPGGWWKGD   46 (69)
T ss_dssp             CCCCCEEEESSCBCCCSSS-------CCCBCTTCEEESCCCCSSSCEEEE
T ss_pred             CCCCcEEEECeeECCCCcC-------ccCCCCCCEEEEEEcCCCCeEEEE
Confidence            3566889999999988776       899999999999999888888764

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.85  E-value=0.01  Score=43.17  Aligned_cols=44  Identities=30%  Similarity=0.687  Sum_probs=37.2

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC---ChhhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD---DPNWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~  287 (366)
                      ++..+.+++|+++|.+..++       +|+|+.||++.++.+.   +..||..+
T Consensus         3 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~~Ww~g~   49 (71)
T 2cre_A            3 SGSSGLLARALYDNCPDCSD-------ELAFSRGDILTILEQHVPESEGWWKCL   49 (71)
T ss_dssp             CCCCCEEEEESSCCCCSSSS-------BCCCCSSCCEEEEESCCTTSTTEEEEE
T ss_pred             CCCCcEEEEECcccCcCCCC-------CCCCCCCCEEEEeEcCCCCCCCcEEEE
Confidence            34667899999999988766       8999999999999986   78888764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.84  E-value=0.03  Score=50.63  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+|.|+||+|||||||++.|+..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457889999999999999999875

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.84  E-value=0.011  Score=43.77  Aligned_cols=49  Identities=27%  Similarity=0.443  Sum_probs=38.3

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhc-CChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~  287 (366)
                      -...+++|+++|.+..+...++..-+|+|+.||++.++.+ .+..||...
T Consensus         5 ~~~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~   54 (75)
T 2ege_A            5 SSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE   54 (75)
T ss_dssp             CCSEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEE
T ss_pred             CCCcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEE
Confidence            4567899999999988555554455999999999999974 677787753

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=93.81  E-value=0.032  Score=49.11  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=22.7

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+..|+|.|++||||||++..|++.
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999875

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.79  E-value=0.01  Score=42.90  Aligned_cols=44  Identities=27%  Similarity=0.661  Sum_probs=37.9

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +++..-+++|+++|.+..++       +|+|+.||++.++...+..||..+
T Consensus         3 s~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   46 (68)
T 1x2k_A            3 SGSSGKVFRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGT   46 (68)
T ss_dssp             CCCCSEEEEESSCCCCCSTT-------BCCCCSSCEEEEEECSCSSEEEEE
T ss_pred             CCCCcEEEEECceECCCCCC-------cccCCCCCEEEEEEcCCCCEEEEE
Confidence            45677899999999988776       899999999999999888888774

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.73  E-value=0.031  Score=51.50  Aligned_cols=25  Identities=16%  Similarity=0.355  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++|+|||||||||+++.|+..
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHh
Confidence            4468999999999999999998753

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=93.71  E-value=0.0078  Score=43.76  Aligned_cols=45  Identities=31%  Similarity=0.660  Sum_probs=37.8

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      ++..+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+.
T Consensus         3 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~   47 (70)
T 2ecz_A            3 SGSSGGEAIAKFNFNGDTQV-------EMSFRKGERITLLRQVDENWYEGRI   47 (70)
T ss_dssp             CCCCCBCEEESSCCCCCSTT-------BCCCCTTCBCEEEEEEETTEEEEEE
T ss_pred             CCCCCCEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCeEEEEE
Confidence            34667889999999998766       8999999999999987788887644

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=93.71  E-value=0.035  Score=50.25  Aligned_cols=25  Identities=20%  Similarity=0.647  Sum_probs=22.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++.++|+||+|+|||++++.|+...
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHc
Confidence            5679999999999999999998753

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=93.69  E-value=0.019  Score=51.44  Aligned_cols=39  Identities=18%  Similarity=0.281  Sum_probs=28.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcce-eeeccCCCCC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAA-AIPHTSRPMK  143 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~-~~~~tTr~pr  143 (366)
                      +..|+|.|+.||||||++..|.+.....+. .+ .+||.|.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep~   42 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREPG   42 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCCC
Confidence            467899999999999999999876433333 22 5677774

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.66  E-value=0.011  Score=42.90  Aligned_cols=45  Identities=24%  Similarity=0.547  Sum_probs=38.4

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      ++..+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+.
T Consensus         3 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~   47 (70)
T 2ct3_A            3 SGSSGTPYRAMYQYRPQNED-------ELELREGDRVDVMQQCDDGWFVGVS   47 (70)
T ss_dssp             CCCCCEEEEESSCBCCSSTT-------BCCBCTTEEEEEEEECSSSCEEEEE
T ss_pred             CCCCCcEEEECccCCcCCcC-------CccCCCCCEEEEEEECCCCEEEEEE
Confidence            45678899999999988776       7999999999999998888887643

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=93.66  E-value=0.0099  Score=42.19  Aligned_cols=42  Identities=29%  Similarity=0.716  Sum_probs=35.5

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      -.+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         3 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   44 (62)
T 1uj0_A            3 HMARRVRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGE   44 (62)
T ss_dssp             -CCEEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred             CCCeEEEECccCCCCCcC-------CcCCCCCCEEEEEEeCCCCEEEEE
Confidence            346789999999988776       799999999999999888888764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.65  E-value=0.03  Score=52.03  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=21.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+.+|+|+|++||||||+++.|++
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445689999999999999999984

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.60  E-value=0.035  Score=46.71  Aligned_cols=25  Identities=32%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ...|+|+|++||||||+++.|++..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=93.60  E-value=0.024  Score=53.06  Aligned_cols=24  Identities=13%  Similarity=0.235  Sum_probs=18.3

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +.+|.|.||+||||||+++.|.+.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999999875

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=93.58  E-value=0.011  Score=41.47  Aligned_cols=41  Identities=32%  Similarity=0.743  Sum_probs=34.8

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .|.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         3 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   43 (59)
T 2g6f_X            3 LGSVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGT   43 (59)
T ss_dssp             CCCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEE
T ss_pred             CCcEEEECceeCCCCcC-------CcCCCCCCEEEEEEecCCCEEEEE
Confidence            45689999999988766       899999999999998888888663

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=93.58  E-value=0.01  Score=42.30  Aligned_cols=44  Identities=34%  Similarity=0.650  Sum_probs=37.2

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +.+.+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         5 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   48 (65)
T 3ulr_B            5 SSDLGITAIALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGV   48 (65)
T ss_dssp             SSSCCSCEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred             CCCCceEEEEEeeECCCCcC-------EeeEecCCEEEEEEecCCCEEEEE
Confidence            34677899999999888766       799999999999998888888663

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=93.54  E-value=0.043  Score=50.34  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=22.7

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ...|+|+|++||||||+++.|++..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999999864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=93.52  E-value=0.038  Score=48.10  Aligned_cols=24  Identities=13%  Similarity=0.382  Sum_probs=21.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +.+++|+||+|+|||+++..+++.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999865

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=93.51  E-value=0.011  Score=43.06  Aligned_cols=41  Identities=27%  Similarity=0.644  Sum_probs=35.1

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .+.+++|+++|.+..++       +|+|+.||++.++.+.+..||...
T Consensus         2 ~~~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~   42 (68)
T 2ew3_A            2 DQPCCRGLYDFEPENQG-------ELGFKEGDIITLTNQIDENWYEGM   42 (68)
T ss_dssp             CCCEEEESSCBCCCSTT-------BCCBCTTCEEEEEEESSSSEEEEE
T ss_pred             CCCEEEEeeeECCCCCC-------ccCCCCCCEEEEEEecCCCEEEEE
Confidence            35688999999988776       899999999999999888888764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=93.51  E-value=0.053  Score=49.62  Aligned_cols=27  Identities=26%  Similarity=0.600  Sum_probs=23.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .++.++|+||+|+|||+++..+++..+
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            456799999999999999999997643

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=93.50  E-value=0.011  Score=42.08  Aligned_cols=42  Identities=29%  Similarity=0.740  Sum_probs=35.8

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      ....+++|+++|.+..++       +|+|+.||++.++...+..||..+
T Consensus         4 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   45 (64)
T 2ak5_A            4 NSQLVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGT   45 (64)
T ss_dssp             CCCCEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEE
T ss_pred             CCCEEEEEccccCCcCcC-------cccCCCCCEEEEeEecCCCEEEEE
Confidence            456789999999988766       899999999999998888888763

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=93.49  E-value=0.011  Score=41.24  Aligned_cols=42  Identities=26%  Similarity=0.634  Sum_probs=35.2

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |..-+++|+++|.+..++       +|+|+.||++.++...+..||..+
T Consensus         1 g~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   42 (58)
T 1zlm_A            1 GQVKVFRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGT   42 (58)
T ss_dssp             CCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred             CCcEEEEECccCCCCCCC-------CccCCCCCEEEEEEeCCCCEEEEE
Confidence            445588999999988766       899999999999999888888763

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=93.46  E-value=0.058  Score=49.62  Aligned_cols=26  Identities=31%  Similarity=0.694  Sum_probs=22.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+..++|+||+|+|||+++..+++..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998764

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=93.46  E-value=0.0098  Score=42.24  Aligned_cols=40  Identities=30%  Similarity=0.772  Sum_probs=34.3

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      ...+++|+++|.+..++       +|+|+.||++.++.+.++.||..
T Consensus        20 ~~~~~~alydy~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g   59 (62)
T 1g2b_A           20 GKELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKV   59 (62)
T ss_dssp             SSCEEEECSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEE
T ss_pred             CceEEEEeeeECCCCCC-------ccCCCCCCEEEEEEecCCCEEEE
Confidence            34688999999988776       89999999999999988888853

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=93.43  E-value=0.013  Score=44.11  Aligned_cols=46  Identities=20%  Similarity=0.497  Sum_probs=38.2

Q ss_pred             cccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        235 HKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       235 ~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +.+.....+++|+++|.+..++       +|+|..||++.++.+.+..||...
T Consensus        12 ~~~~~~~~~~~Alydy~a~~~~-------eLsf~~Gd~I~Vl~~~~~gWw~g~   57 (79)
T 1z9q_A           12 HMDRMAAPRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGT   57 (79)
T ss_dssp             --CCSSCCCEEESSCCCCSSTT-------BCCCCTTCCBCCCEESSSSEEEEE
T ss_pred             CCCCCCceEEEEcCccCCCCCC-------cccccCCCEEEEeEecCCCEEEEE
Confidence            3455778889999999988776       899999999999999888888764

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=93.39  E-value=0.01  Score=41.78  Aligned_cols=40  Identities=23%  Similarity=0.596  Sum_probs=34.6

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +++.+|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         4 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~   43 (60)
T 1w70_A            4 HMRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGT   43 (60)
T ss_dssp             SCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECSSSEEEEE
T ss_pred             CcEEEECccCCcCCCC-------CccCCCCCEEEEEEeCCCCeEEEE
Confidence            5688999999988776       799999999999999888888663

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=93.38  E-value=0.011  Score=42.79  Aligned_cols=42  Identities=24%  Similarity=0.520  Sum_probs=35.6

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE  289 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  289 (366)
                      .++++|+++|.+..++       +|+|+.||++.++.+.+..||..+..
T Consensus         7 ~~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~   48 (68)
T 1tg0_A            7 PFKVVAQFPYKSDYED-------DLNFEKDQEIIVTSVEDAEWYFGEYQ   48 (68)
T ss_dssp             SEEEEESSCBCCSCTT-------BCCBCTTCEEEEEEECSSSEEEEEEE
T ss_pred             CEEEEECeeECcCCcC-------CCCCCCCCEEEEEEecCCCeEEEEEC
Confidence            4688999999988776       89999999999999888888877443

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.38  E-value=0.042  Score=50.63  Aligned_cols=26  Identities=15%  Similarity=0.178  Sum_probs=22.6

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++.|+||+|||||||++.|+-.
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999999854

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.35  E-value=0.045  Score=48.97  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999853

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=93.34  E-value=0.052  Score=50.05  Aligned_cols=26  Identities=23%  Similarity=0.571  Sum_probs=23.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ++.++|+||+|+|||+++..+++...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            56899999999999999999998643

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=93.34  E-value=0.011  Score=47.45  Aligned_cols=44  Identities=18%  Similarity=0.362  Sum_probs=37.9

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE  289 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  289 (366)
                      ...+|.+|+|+|.+..++       +|+|+.||++.++.+.+.+||..+..
T Consensus         3 ~~~~~~~Alydy~a~~~~-------ELsf~~Gd~i~vl~~~~~~Ww~g~~~   46 (108)
T 2rqv_A            3 LGSLYAIVLYDFKAEKAD-------ELTTYVGENLFICAHHNCEWFIAKPI   46 (108)
T ss_dssp             CSCCCEEESSCCCCCSSS-------BCCCCSSEEECCCCEETTTEEEECCS
T ss_pred             CCCeEEEECCCcCCCCCC-------cCCcCCCCEEEEeEecCCCEEEEEEC
Confidence            345799999999998877       79999999999999988999987543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.33  E-value=0.043  Score=49.76  Aligned_cols=25  Identities=20%  Similarity=0.425  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|||||||++.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5578999999999999999999853

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.32  E-value=0.036  Score=49.79  Aligned_cols=25  Identities=20%  Similarity=0.161  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+-.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999998853

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.31  E-value=0.043  Score=52.26  Aligned_cols=25  Identities=16%  Similarity=0.127  Sum_probs=21.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+|.|+||+||||||++..|...
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3446789999999999999998764

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.28  E-value=0.017  Score=43.17  Aligned_cols=45  Identities=29%  Similarity=0.612  Sum_probs=38.1

Q ss_pred             ccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       236 ~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .....+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus        12 ~~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   56 (79)
T 1x69_A           12 YENDLGITAVALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGV   56 (79)
T ss_dssp             CCCCCCCCEEESSCCCCSSSS-------BCCCCTTCEEEEEEECSSSEEEEE
T ss_pred             cCCCCCeEEEECccCCCCCCC-------CcCcCCCCEEEEeEecCCCeEEEE
Confidence            344678899999999988776       899999999999998888888763

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=93.24  E-value=0.034  Score=48.90  Aligned_cols=24  Identities=17%  Similarity=0.223  Sum_probs=21.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...++.|+||+|+|||||+..|+.
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999975

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=93.23  E-value=0.013  Score=43.42  Aligned_cols=43  Identities=21%  Similarity=0.543  Sum_probs=36.7

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      -...+++|+++|.+..++       +|+|+.||++.++.+.+..||..+.
T Consensus         8 ~~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~   50 (76)
T 2ed1_A            8 NKVRRVKTIYDCQADNDD-------ELTFIEGEVIIVTGEEDQEWWIGHI   50 (76)
T ss_dssp             CCCEEEEESSCCCCSSSS-------BCCCCSSCEEEESSCCSSSEEEEEE
T ss_pred             CCCeEEEECccCCCCCcC-------CcCcCCCCEEEEEEecCCCEEEEEE
Confidence            346789999999988776       8999999999999988888987753

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=93.22  E-value=0.012  Score=41.76  Aligned_cols=41  Identities=32%  Similarity=0.616  Sum_probs=35.5

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .+.+++|+++|.+..++       +|+|+.||++.++...+..||...
T Consensus         4 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   44 (62)
T 1k4u_S            4 KGSQVEALFSYEATQPE-------DLEFQEGDIILVLSKVNEEWLEGE   44 (62)
T ss_dssp             CCEEEECCSCBCCCSSS-------BCCBCSSCEEEEEEESSSSCEEEE
T ss_pred             CCeEEEECCCCCcCCCC-------CccCCCCCEEEEEEeCCCCEEEEE
Confidence            45689999999988776       899999999999999888888764

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=93.22  E-value=0.0088  Score=42.15  Aligned_cols=42  Identities=31%  Similarity=0.635  Sum_probs=34.5

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +...+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         4 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   45 (60)
T 2gnc_A            4 GSPEFAIAKFDYVGRSAR-------ELSFKKGASLLLYHRASEDWWEGR   45 (60)
T ss_dssp             --CEEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEEETTEEEEE
T ss_pred             CCCEEEEECCCCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEEE
Confidence            456889999999988766       799999999999998777888653

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=93.19  E-value=0.012  Score=41.30  Aligned_cols=42  Identities=21%  Similarity=0.719  Sum_probs=33.4

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC--ChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~  287 (366)
                      |...+.+|+++|.+..++       +|+|+.||++.++.+.  +..||..+
T Consensus         1 g~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~   44 (60)
T 1oot_A            1 GSSPKAVALYSFAGEESG-------DLPFRKGDVITILKKSDSQNDWWTGR   44 (60)
T ss_dssp             --CCEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSCTTSEEEEE
T ss_pred             CCccEEEECccCCcCCcC-------EeeEcCCCEEEEEEeCCCCCCeEEEE
Confidence            456688999999988766       8999999999999886  67777653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.16  E-value=0.045  Score=50.92  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|||||||++.|+-.
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            4578999999999999999999853

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=93.16  E-value=0.01  Score=42.90  Aligned_cols=43  Identities=26%  Similarity=0.687  Sum_probs=36.4

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +..+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         4 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   46 (68)
T 1wi7_A            4 GSSGRRCQVAFSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGV   46 (68)
T ss_dssp             CCCCCCEEESSCBCCSSTT-------BCCBCTTCEECCCEEEETTEEEEC
T ss_pred             CCCCCEEEECccCCcCCCC-------CccCcCCCEEEEEEcCCCCeEEEE
Confidence            4567789999999998776       899999999999998778888764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=93.16  E-value=0.056  Score=46.52  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..++|+||+|+|||+++..+++.
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.13  E-value=0.046  Score=50.49  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+-.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4678999999999999999999853

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.11  E-value=0.049  Score=50.32  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.6

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++.|+||+|+|||||++.|+-.
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            35678999999999999999999853

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.08  E-value=0.055  Score=47.33  Aligned_cols=23  Identities=35%  Similarity=0.696  Sum_probs=20.2

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.|+||+|+|||||++.|+..
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhh
Confidence            36889999999999999998854

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=93.07  E-value=0.31  Score=43.40  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHh
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..-|-|+|..||||||++..|.+
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999987

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.06  E-value=0.046  Score=48.63  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=20.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHh
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..++.|+||+|+|||||++.|+-
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46789999999999999999874

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.05  E-value=0.017  Score=43.28  Aligned_cols=44  Identities=20%  Similarity=0.481  Sum_probs=38.1

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +.+...|++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         6 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   49 (81)
T 2ysq_A            6 SGDSIVSAEAVWDHVTMANR-------ELAFKAGDVIKVLDASNKDWWWGQ   49 (81)
T ss_dssp             CCCCCEEEEESSCCCCSSSS-------SCCCCTTCEEEEEECCSSSEEEEE
T ss_pred             CCCCceEEEEeeeECCCCCC-------cCCCCCCCEEEEEEEcCcCEEEEE
Confidence            45778899999999988766       799999999999999888888774

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=93.05  E-value=0.013  Score=41.53  Aligned_cols=42  Identities=26%  Similarity=0.461  Sum_probs=35.0

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |..-+++|+++|.+..++       +|+|+.||++.++...+..||...
T Consensus         1 g~~~~~~al~~y~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~   42 (62)
T 2fpe_A            1 GSEQTHRAIFRFVPRHED-------ELELEVDDPLLVELQAEDYWYEAY   42 (62)
T ss_dssp             CCCCCEEECSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEE
T ss_pred             CCCCEEEECccCCccCcC-------cCcCCCCCEEEEEEecCCCEEEEE
Confidence            344578899999998777       799999999999988888888764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.04  E-value=0.049  Score=49.06  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.04  E-value=0.044  Score=51.52  Aligned_cols=26  Identities=15%  Similarity=0.146  Sum_probs=22.2

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+.+|.|+||+|||||||++.|+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567889999999999999999864

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=93.03  E-value=0.07  Score=51.04  Aligned_cols=27  Identities=37%  Similarity=0.512  Sum_probs=23.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .++.++|.||+|+|||++++.|++..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            456899999999999999999998653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.02  E-value=0.047  Score=49.69  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=21.0

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++.|+||+|+|||||.+.|+-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            68899999999999999999863

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=93.00  E-value=0.018  Score=42.53  Aligned_cols=43  Identities=26%  Similarity=0.577  Sum_probs=36.6

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .....+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         7 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   49 (76)
T 1ujy_A            7 GSHQLIVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEGT   49 (76)
T ss_dssp             SCCCEEEECCSCBCCSSTT-------SCCBCSSCCEEESSCCSSSCEEEE
T ss_pred             CCCCEEEEECccCCcCCCC-------cccCCCCCEEEEEEecCCCEEEEE
Confidence            3567889999999988766       899999999999998888888764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.00  E-value=0.048  Score=49.44  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||.+.|+-.
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=92.95  E-value=0.05  Score=49.65  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=92.95  E-value=0.05  Score=49.90  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+-.
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=92.95  E-value=0.044  Score=49.76  Aligned_cols=25  Identities=24%  Similarity=0.599  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++.++|+||+|+|||+++..+++.
T Consensus        43 ~~~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           43 IPKGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHH
Confidence            3567899999999999999999875

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=92.94  E-value=0.047  Score=49.57  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999853

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=92.92  E-value=0.052  Score=50.24  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=92.92  E-value=0.05  Score=51.26  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.++.|+||+||||||++..|+..
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999853

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=92.92  E-value=0.013  Score=40.81  Aligned_cols=38  Identities=21%  Similarity=0.752  Sum_probs=33.0

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |++|+++|.+..++       +|+|+.||++.++.+.++.||...
T Consensus         3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   40 (58)
T 1uti_A            3 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGR   40 (58)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred             EEEECccCCCCCcC-------CCCCCCCCEEEEEEECCCCEEEEE
Confidence            78899999988766       899999999999999888888663

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=92.90  E-value=0.065  Score=50.00  Aligned_cols=26  Identities=19%  Similarity=0.568  Sum_probs=23.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++.++|+||+|+|||+|++.|+...
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHh
Confidence            45789999999999999999999764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=92.90  E-value=0.053  Score=49.84  Aligned_cols=25  Identities=16%  Similarity=0.262  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5578999999999999999999854

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.88  E-value=0.055  Score=49.72  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.5

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++.|+||+|+|||||++.|+-.
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999999853

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=92.87  E-value=0.018  Score=41.54  Aligned_cols=44  Identities=30%  Similarity=0.507  Sum_probs=36.8

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      ++....+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         3 s~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   46 (68)
T 2djq_A            3 SGSSGPRAKALCNYRGKNPG-------DLKFNKGDVILLRRQLDENWYQGE   46 (68)
T ss_dssp             CCSSCCEEEECSCCCSCCTT-------CCCCCTTCEEEEEECCCSSEEEEE
T ss_pred             CCCCceEEEECCCCCCCCcC-------CccCCCCCEEEEEEecCCCEEEEE
Confidence            34556789999999988766       899999999999998888888764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.87  E-value=0.059  Score=49.73  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+-.
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5578999999999999999999864

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.83  E-value=0.015  Score=42.64  Aligned_cols=44  Identities=30%  Similarity=0.641  Sum_probs=37.0

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      .+..++++|+++|.+..++       +|+|+.||++.++.+.+..||..+.
T Consensus         6 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~   49 (72)
T 2dl8_A            6 SGEPIEAIAKFDYVGRTAR-------ELSFKKGASLLLYQRASDDWWEGRH   49 (72)
T ss_dssp             SCSCEEEEESSCBCCSSSS-------BCCBCTTCEEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEECccCCcCCCC-------EeccCCCCEEEEEeecCCCEEEEEE
Confidence            4567899999999988766       7999999999999988788887643

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=92.83  E-value=0.07  Score=48.12  Aligned_cols=25  Identities=24%  Similarity=0.741  Sum_probs=21.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++-++|+||+|+|||+|++.++...
T Consensus        49 ~~g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           49 PKGVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3449999999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=92.83  E-value=0.057  Score=49.28  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999863

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=92.81  E-value=0.012  Score=41.07  Aligned_cols=40  Identities=23%  Similarity=0.507  Sum_probs=32.3

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCC-hhhHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD-PNWWQAY  287 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~  287 (366)
                      |+..+|+++|.+..++       +|+|+.||++.++...+ ..||..+
T Consensus         1 G~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~g~   41 (58)
T 1zuu_A            1 GMENKVLYAYVQKDDD-------EITITPGDKISLVARDTGSGWTKIN   41 (58)
T ss_dssp             --CCEECSCBCCCSTT-------BCCBCTTCCEEEEECCSSSSEEEEE
T ss_pred             CCEEEEeeeECCcCCC-------cccCCCCCEEEEeEcCCCCCCEEEE
Confidence            5678999999988776       89999999999999876 6777653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=92.81  E-value=0.059  Score=47.19  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...+++|+||+|+|||+|+..|+.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999999884

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=92.78  E-value=0.059  Score=49.83  Aligned_cols=25  Identities=12%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...+++|+||+|+|||+++..+++.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999988764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=92.76  E-value=0.058  Score=45.04  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=19.9

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -|+|+|++|+|||+|..+|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=92.75  E-value=0.045  Score=48.98  Aligned_cols=25  Identities=8%  Similarity=0.150  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+|.|.||+||||||+++.|+..
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4567899999999999999999876

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=92.73  E-value=0.019  Score=42.70  Aligned_cols=41  Identities=34%  Similarity=0.659  Sum_probs=35.7

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      ..+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..
T Consensus         5 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g   45 (78)
T 2yuo_A            5 SSGRRAKALLDFERHDDD-------ELGFRKNDIITIISQKDEHCWVG   45 (78)
T ss_dssp             CCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEE
T ss_pred             CCceEEEECccCCCCCCC-------CccCCCCCEEEEEEecCCCEEEE
Confidence            456789999999988776       89999999999999888888865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=92.72  E-value=0.024  Score=48.97  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +.+.|+||||||||||+..|+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56889999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=92.72  E-value=0.034  Score=48.70  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .-|+|+|++|||||+|..+|...
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            34889999999999999999865

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=92.71  E-value=0.06  Score=51.07  Aligned_cols=25  Identities=24%  Similarity=0.582  Sum_probs=22.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +..++|+||+|+|||||++.++...
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3678999999999999999998764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=92.71  E-value=0.057  Score=49.40  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+-.
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4568999999999999999999864

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=92.70  E-value=0.095  Score=50.29  Aligned_cols=27  Identities=37%  Similarity=0.586  Sum_probs=23.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+..++|+||+|+|||++++.|++..+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            346799999999999999999998653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=92.70  E-value=0.056  Score=51.58  Aligned_cols=25  Identities=16%  Similarity=0.201  Sum_probs=21.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.++.|+||+||||||++..|+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999853

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.70  E-value=0.057  Score=46.58  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=19.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -|+|+|++|||||||+.+|+..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3789999999999999999864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.69  E-value=0.055  Score=46.08  Aligned_cols=21  Identities=29%  Similarity=0.621  Sum_probs=19.4

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.+|+..
T Consensus         5 v~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=92.69  E-value=0.064  Score=50.29  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...+++|+||+|+|||+|+..+++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4578999999999999999999864

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=92.68  E-value=0.1  Score=53.20  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=31.7

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCC
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGK   45 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~   45 (366)
                      .|++|..|.++|||++ + |+.||+|++|||..+.+.
T Consensus       277 ~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~  311 (539)
T 4fln_A          277 EGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCE  311 (539)
T ss_dssp             BCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSS
T ss_pred             CceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcC
Confidence            5899999999999986 5 999999999999999653

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=92.66  E-value=0.015  Score=40.38  Aligned_cols=38  Identities=37%  Similarity=0.803  Sum_probs=33.0

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   40 (57)
T 1cka_A            3 YVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAE   40 (57)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEE
T ss_pred             EEEECCcCCCCCCC-------CCCCCCCCEEEEEEecCCCcEEEE
Confidence            67899999988766       799999999999999888888764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=92.65  E-value=0.063  Score=50.76  Aligned_cols=26  Identities=35%  Similarity=0.595  Sum_probs=22.7

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+..+.|+||+|+|||||+..|+..
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            45678999999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.65  E-value=0.12  Score=49.72  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=22.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..++|+||||||||||++.|...
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4568999999999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=92.63  E-value=0.069  Score=46.54  Aligned_cols=24  Identities=17%  Similarity=0.095  Sum_probs=21.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...+++|+||+|+|||+|+..|+.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999986

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=92.63  E-value=0.061  Score=49.59  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=22.4

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++.|+||+|+|||||++.|+-.
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            35678999999999999999998854

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.61  E-value=0.023  Score=43.37  Aligned_cols=44  Identities=27%  Similarity=0.692  Sum_probs=37.5

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      ...+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+.
T Consensus        14 ~~~~~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~   57 (88)
T 1x2q_A           14 NKVARKVRALYDFEAVEDN-------ELTFKHGEIIIVLDDSDANWWKGEN   57 (88)
T ss_dssp             CCCCEEEEESSCCCCCSSS-------CCCCCSSCEEEEEECSCSSSEEEEE
T ss_pred             CCCCeEEEEcccCCCCCcC-------ccCCCCCCEEEEEEeCCCCEEEEEE
Confidence            3567789999999988776       7999999999999998888987743

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=92.60  E-value=0.013  Score=40.97  Aligned_cols=40  Identities=28%  Similarity=0.655  Sum_probs=33.8

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |.+++|+++|.+..++       +|+|+.||++.++.+.+..||...
T Consensus         1 g~~~~al~d~~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~   40 (59)
T 1yn8_A            1 GQRAVALYDFEPENDN-------ELRLAEGDIVFISYKHGQGWLVAE   40 (59)
T ss_dssp             CEEEEECSCBCCCSTT-------BCCBCTTCEEEEEEEEETTEEEEE
T ss_pred             CCEEEECccCCCCCCC-------CcCCCCCCEEEEEEcCCCCeEEEE
Confidence            4678999999988766       799999999999988777788664

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=92.55  E-value=0.053  Score=46.66  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=19.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -++|+|++|||||||+.+|+..
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.54  E-value=0.061  Score=50.05  Aligned_cols=25  Identities=20%  Similarity=0.199  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+-.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4568999999999999999999864

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=92.53  E-value=0.017  Score=41.61  Aligned_cols=38  Identities=21%  Similarity=0.648  Sum_probs=33.4

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +++|+++|.+..++       +|+|+.||++.++.+.+..||...
T Consensus         3 ~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~   40 (65)
T 2fei_A            3 QCKVLFEYIPQNED-------ELELKVGDIIDINEEVEEGWWSGT   40 (65)
T ss_dssp             EEECSSCCCCCSTT-------BCCCCTTCEEECCCCSSSSEEEEE
T ss_pred             EEEECccCCcCCcC-------ccCCCCCCEEEEEEecCCCEEEEE
Confidence            67899999988776       899999999999999888888774

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.53  E-value=0.021  Score=41.67  Aligned_cols=42  Identities=29%  Similarity=0.431  Sum_probs=35.3

Q ss_pred             CCeeeeeeecCCCC-CCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDP-EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p-~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      ..+..++|+++|.+ ..++       +|+|+.||++.++.+.+..||..+
T Consensus         5 ~~~~~~~Alydy~~~~~~~-------eLsf~~Gd~i~v~~~~~~~W~~g~   47 (71)
T 2gqi_A            5 SSGRRVRAILPYTKVPDTD-------EISFLKGDMFIVHNELEDGWMWVT   47 (71)
T ss_dssp             CSCCCEEESSCCCCCTTSS-------CCCCCTTCBCCCCEECSSSCEEEE
T ss_pred             CCCCEEEECcccCCCCCCC-------CCCCCCCCEEEEEEecCCCEEEEE
Confidence            44567899999999 6655       799999999999999888888764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=92.53  E-value=0.07  Score=49.31  Aligned_cols=22  Identities=27%  Similarity=0.703  Sum_probs=20.4

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +++|+||+|+|||+++..|++.
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            7899999999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=92.52  E-value=0.073  Score=47.67  Aligned_cols=26  Identities=19%  Similarity=0.385  Sum_probs=22.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+..|.|+|++||||||+++.|++..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45678999999999999999999754

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=92.52  E-value=0.018  Score=40.27  Aligned_cols=41  Identities=17%  Similarity=0.489  Sum_probs=34.2

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhc-CChhhHHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQAYR  288 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~  288 (366)
                      +.+++|+++|.+..++       +|+|+.||++.++.+ .+..||..+.
T Consensus         2 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~   43 (60)
T 2v1q_A            2 MERGIVQYDFMAESQD-------ELTIKSGDKVYILDDKKSKDWWMCQL   43 (60)
T ss_dssp             CCEEEECSCBCCCSTT-------BCCBCTTCEEEEEESSSCSSEEEEEE
T ss_pred             CcEEEEeeeECCCCCC-------CccCCCCCEEEEEeCCCCCCCEEEEE
Confidence            5688999999988776       899999999999998 4778886643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=92.48  E-value=0.062  Score=47.11  Aligned_cols=25  Identities=16%  Similarity=0.165  Sum_probs=22.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..+|.|+|++||||||+++.|++..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578899999999999999999863

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=92.46  E-value=0.034  Score=45.96  Aligned_cols=26  Identities=12%  Similarity=0.263  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ...+|+|.||+|+|||++++.+.+..
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhC
Confidence            35689999999999999999987653

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=92.45  E-value=0.15  Score=42.49  Aligned_cols=24  Identities=13%  Similarity=0.304  Sum_probs=20.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..-|+|+|++|||||+|..+|...
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345889999999999999999864

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=92.45  E-value=0.025  Score=42.20  Aligned_cols=44  Identities=16%  Similarity=0.436  Sum_probs=37.2

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE  289 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  289 (366)
                      ....|++|+++|.+..++       +|+|+.||++.++.+.+..||.....
T Consensus         5 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~~   48 (80)
T 1ue9_A            5 SSGEIAQVTSAYVASGSE-------QLSLAPGQLILILKKNTSGWWQGELQ   48 (80)
T ss_dssp             SCCEEEEECSCCCCCSTT-------BCCCCTTCEEEEEEECSSSEEEEEEC
T ss_pred             CCCeEEEECcccCCCCCC-------CCCCCCCCEEEEEEecCCCcEEEEEC
Confidence            456789999999988766       89999999999999988888877443

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=92.43  E-value=0.064  Score=49.13  Aligned_cols=25  Identities=16%  Similarity=0.284  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=92.42  E-value=0.015  Score=42.94  Aligned_cols=42  Identities=31%  Similarity=0.800  Sum_probs=36.0

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +...+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus        15 ~~~~~~~Alydy~a~~~~-------eLsf~~Gd~i~Vl~~~~~gWw~g~   56 (72)
T 2l0a_A           15 HEARKVRAIYDFEAAEDN-------ELTFKAGEIITVLDDSDPNWWKGE   56 (72)
T ss_dssp             CCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEEETTEEEEE
T ss_pred             CCCeEEEECCccCCCCCC-------ccCCCCCCEEEEEEecCCCEEEEE
Confidence            456788999999988776       899999999999998888888764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=92.41  E-value=0.06  Score=45.81  Aligned_cols=22  Identities=9%  Similarity=0.289  Sum_probs=19.7

Q ss_pred             CcEEEeCCCCCChHHHHHHHHh
Q psy16959        105 RPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+.+|+||+|+|||+|+..|.-
T Consensus        27 g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999999864

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=92.39  E-value=0.018  Score=40.43  Aligned_cols=41  Identities=32%  Similarity=0.730  Sum_probs=34.7

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         4 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   44 (60)
T 2xmf_A            4 GSPQCKALYAYDAQDTD-------ELSFNANDIIDIIKEDPSGWWTGR   44 (60)
T ss_dssp             CSCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEE
T ss_pred             CCcEEEECccCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEEE
Confidence            34678999999988766       899999999999999888888764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=92.35  E-value=0.056  Score=49.34  Aligned_cols=26  Identities=31%  Similarity=0.625  Sum_probs=22.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++.++|+||+|+|||+++..+++..
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            34579999999999999999998763

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=92.34  E-value=0.018  Score=41.01  Aligned_cols=40  Identities=28%  Similarity=0.714  Sum_probs=34.1

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE  289 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  289 (366)
                      +++|+++|.+..++       +|+|+.||++.++.+.+..||.....
T Consensus         3 ~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~   42 (65)
T 2oaw_A            3 LVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEVK   42 (65)
T ss_dssp             EEEECSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEEE
T ss_pred             EEEEcccCCccCCC-------CCCCCCCCEEEEEEcCCCCEEEEEEc
Confidence            67899999988766       89999999999999988888876433

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=92.32  E-value=0.018  Score=40.17  Aligned_cols=39  Identities=23%  Similarity=0.618  Sum_probs=33.4

Q ss_pred             eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      -+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   41 (58)
T 1zx6_A            3 EYVEALYQFDPQQDG-------DLGLKPGDKVQLLEKLSPEWYKGS   41 (58)
T ss_dssp             CEEEECSCBCCCSTT-------BCCBCTTCEEEEEEECSSSEEEEE
T ss_pred             eEEEECceECCCCCC-------CccCCCCCEEEEEEecCCCEEEEE
Confidence            378899999988766       899999999999999888888664

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=92.29  E-value=0.022  Score=43.20  Aligned_cols=42  Identities=24%  Similarity=0.511  Sum_probs=34.9

Q ss_pred             CCeeeeeeecCC-CCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDY-DPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~-~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      ...++++|+++| .+..++       +|+|+.||++.++.+.+..||..+
T Consensus        16 ~~~~~~~Alydy~~a~~~~-------eLsf~~GDiI~V~~~~~~gWw~G~   58 (83)
T 2ke9_A           16 RGSLKVRALKDFWNLHDPT-------ALNVRAGDVITVLEQHPDGRWKGH   58 (83)
T ss_dssp             -CCEEEEESSCBCCCSCTT-------BCCBCTTCEEEESCSSCSSCEEEE
T ss_pred             CCCeEEEEccccCCCCCCC-------cccccCCCEEEEEEecCCCeEEEE
Confidence            456789999999 666655       899999999999999888888775

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=92.29  E-value=0.017  Score=42.86  Aligned_cols=42  Identities=19%  Similarity=0.502  Sum_probs=36.1

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      .+.+++|+++|.+..++       +|+|+.||++.++.+.+.+||..+.
T Consensus        19 ~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~   60 (77)
T 1awj_A           19 EETLVIALYDYQTNDPQ-------ELALRCDEEYYLLDSSEIHWWRVQD   60 (77)
T ss_dssp             SSSCCCCCCCBCCCCTT-------SCCBCSSSCCSCCCTTSSSBCCCCC
T ss_pred             CceEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCCEEEEE
Confidence            45688999999988776       8999999999999998889997743

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=92.27  E-value=0.1  Score=44.08  Aligned_cols=23  Identities=22%  Similarity=0.556  Sum_probs=20.4

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      -|+|+|++|||||+|..+|....
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            48899999999999999998653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=92.25  E-value=0.085  Score=46.28  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=21.7

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+|+|+|++||||||++..|++..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            578999999999999999998864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=92.21  E-value=0.091  Score=48.19  Aligned_cols=25  Identities=24%  Similarity=0.741  Sum_probs=21.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++-++|+||+|+|||+|++.|+...
T Consensus        73 ~~gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           73 PKGVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCcChHHHHHHHHHHHc
Confidence            3449999999999999999998753

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=92.21  E-value=0.076  Score=44.89  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=19.9

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -|+|+|++|||||||..+|+..
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999864

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=92.20  E-value=0.019  Score=39.97  Aligned_cols=40  Identities=43%  Similarity=0.985  Sum_probs=33.8

Q ss_pred             eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      .+++|+++|.+..++       +|+|+.||++.++.+.+..||..+.
T Consensus         3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~   42 (58)
T 2vwf_A            3 TYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGAC   42 (58)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             eEEEECceECCCCcC-------CcCCCCCCEEEEEEcCCCCEEEEEE
Confidence            378899999988776       8999999999999988888887643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=92.20  E-value=0.11  Score=48.65  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ....++|+||+|+|||+++..+++..
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            34679999999999999999998764

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=92.20  E-value=0.026  Score=41.38  Aligned_cols=42  Identities=31%  Similarity=0.724  Sum_probs=35.6

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      ....+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         5 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   46 (73)
T 2dbm_A            5 SSGPCCRALYDFEPENEG-------ELGFKEGDIITLTNQIDENWYEGM   46 (73)
T ss_dssp             CCCCEEEESSCBCCCSTT-------CCCBCTTCEEECCBCSSSSEEEEE
T ss_pred             CCCCEEEEccccCCCCCC-------CccCCCCCEEEEEEecCCCEEEEE
Confidence            345689999999988776       899999999999999888888763

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=92.20  E-value=0.017  Score=40.31  Aligned_cols=39  Identities=28%  Similarity=0.584  Sum_probs=33.1

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      +++|+++|.+..++       +|+|+.||++.++.+.+..||..+.
T Consensus         2 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~   40 (58)
T 1jo8_A            2 WATAEYDYDAAEDN-------ELTFVENDKIINIEFVDDDWWLGEL   40 (58)
T ss_dssp             CEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             EEEECceECCCCCC-------CcccCCCCEEEEEEecCCCcEEEEE
Confidence            46899999888766       8999999999999998888887643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=92.18  E-value=0.096  Score=45.11  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.+++..
T Consensus         9 v~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            9 VVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999854

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=92.16  E-value=0.082  Score=46.83  Aligned_cols=24  Identities=13%  Similarity=0.182  Sum_probs=21.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...++.|+||+|+|||+|+..|+.
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            456899999999999999999986

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=92.15  E-value=0.024  Score=40.96  Aligned_cols=42  Identities=14%  Similarity=0.580  Sum_probs=35.5

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      ...+.+++|+++|.+..++       +|+|+.||++.++.+. ..||..+
T Consensus         4 ~~~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~-~~Ww~~~   45 (68)
T 1wxt_A            4 GSSGLKMQVLYEFEARNPR-------ELTVVQGEKLEVLDHS-KRWWLVK   45 (68)
T ss_dssp             CCCCEEEEESSCBCCCSSS-------BCCBCTTCEEEEEECS-SSEEEEE
T ss_pred             CCCCeEEEECceECCCCcC-------cCCCCCCCEEEEEEcC-CCEEEEE
Confidence            4567899999999998776       8999999999999985 7788664

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=92.14  E-value=0.095  Score=47.54  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=22.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+++|+||+|+|||++++.+.+.
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHh
Confidence            3578999999999999999999875

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=92.12  E-value=0.019  Score=43.03  Aligned_cols=41  Identities=24%  Similarity=0.410  Sum_probs=34.9

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChh-hHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN-WWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~  287 (366)
                      ...+++|+++|.+..++       +|+|+.||++.++.+.+.. ||..+
T Consensus         9 ~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~gWw~g~   50 (80)
T 2i0n_A            9 FAKYARALKDYNVSDTS-------LLPFKRNDIITITFKDQENKWFMGQ   50 (80)
T ss_dssp             CCCEEEESSCBCCCSSS-------SCCBCSSEEEEEEEESSSSSEEEEE
T ss_pred             CCeEEEECCCCCcCCCC-------CcCCCCCCEEEEEEecCCCCEEEEE
Confidence            45789999999988776       8999999999999998777 87653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=92.10  E-value=0.071  Score=50.39  Aligned_cols=25  Identities=32%  Similarity=0.634  Sum_probs=22.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++.++|+||+|+|||+|++.+++..
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            4679999999999999999999764

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.01  E-value=0.024  Score=43.29  Aligned_cols=41  Identities=24%  Similarity=0.499  Sum_probs=36.1

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .+++++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus        16 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~   56 (88)
T 2cub_A           16 LNMPAYVKFNYMAERED-------ELSLIKGTKVIVMEKCSDGWWRGS   56 (88)
T ss_dssp             CCEEEEESSCCCCCSTT-------BCCCCTTEEEEEEEECTTSEEEEE
T ss_pred             CCCEEEEccccCCCCCC-------CcCCCCCCEEEEEEccCCCeEEEE
Confidence            57889999999988776       899999999999999888888764

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=92.00  E-value=0.02  Score=39.80  Aligned_cols=39  Identities=38%  Similarity=1.004  Sum_probs=33.4

Q ss_pred             eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .+++|+++|.+..++       +|+|+.||++.++...+..||...
T Consensus         3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   41 (58)
T 1sem_A            3 KFVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQ   41 (58)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEE
T ss_pred             eEEEECcCCCCCCCC-------CcCCCCCCEEEEEEecCCCEEEEE
Confidence            367899999988766       899999999999999888888764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.99  E-value=0.084  Score=43.61  Aligned_cols=21  Identities=19%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|..+|...
T Consensus         5 i~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            789999999999999999753

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=91.99  E-value=0.029  Score=40.71  Aligned_cols=43  Identities=28%  Similarity=0.689  Sum_probs=35.6

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC--ChhhHHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQAY  287 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~  287 (366)
                      +...-+++|+++|.+..++       +|+|+.||++.++.+.  +..||..+
T Consensus         4 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~W~~g~   48 (70)
T 2da9_A            4 GSSGDYCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGE   48 (70)
T ss_dssp             CCSSEEEEECSCCCCSSTT-------BCCCCTTEEEEEEECCCSSTTEEEEE
T ss_pred             CCCCcEEEECcCCCCCCcC-------EeeEcCCCEEEEEECCCCCCCeEEEE
Confidence            4456789999999988776       8999999999999885  77788664

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=91.97  E-value=0.081  Score=51.17  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=21.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.++.|+||+||||||++..|+..
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhh
Confidence            4567899999999999999999853

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=91.96  E-value=0.032  Score=40.80  Aligned_cols=42  Identities=19%  Similarity=0.404  Sum_probs=34.3

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhc-CChhhHHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQAY  287 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~  287 (366)
                      ....+++|+++|.+..++       +|+|+.||++.++.+ .+..||..+
T Consensus         8 ~~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~Ww~g~   50 (72)
T 1ugv_A            8 TPFRKAKALYACKAEHDS-------ELSFTAGTVFDNVHPSQEPGWLEGT   50 (72)
T ss_dssp             CSCCCEEESSCBCCCSSS-------BCCBCTTCEEBSCCBCSSTTEEEEE
T ss_pred             CCccEEEEccccCCcCCC-------EeCCcCCCEEEEEEecCCCCeEEEE
Confidence            445689999999988776       899999999999885 667777653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=91.95  E-value=0.078  Score=48.99  Aligned_cols=23  Identities=26%  Similarity=0.612  Sum_probs=20.6

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +-++|+||+|+|||+|++.|+..
T Consensus        45 ~GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           45 AGVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            33999999999999999999875

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=91.95  E-value=0.024  Score=41.12  Aligned_cols=39  Identities=26%  Similarity=0.670  Sum_probs=33.2

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      ..+++|+++|.+..++       +|+|+.||++.++.+. .+||..+
T Consensus         4 ~~~~~Alydy~a~~~~-------ELsf~~Gd~i~vl~~~-~~Ww~~~   42 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQ-------ELDIKKNERLWLLDDS-KTWWRVR   42 (67)
T ss_dssp             CEEEEESSCBCCSSTT-------SCCBCTTCEEEEEECS-SSSCEEE
T ss_pred             CeEEEEeeeECCCCCC-------ccccCCCCEEEEEecC-CCeEEEE
Confidence            4688999999988776       8999999999999984 6788774

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=91.94  E-value=0.012  Score=44.65  Aligned_cols=48  Identities=17%  Similarity=0.365  Sum_probs=38.5

Q ss_pred             cccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC--ChhhHHHHHcc
Q psy16959        235 HKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQAYREG  290 (366)
Q Consensus       235 ~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~  290 (366)
                      +.+||.-++ .|+++|.+..+.       +|+|++||.+.+++..  +++||+++...
T Consensus        12 ~~~g~~e~~-valydF~Ar~~~-------ELS~~kGd~vevle~~~~~peW~lvr~~~   61 (82)
T 1u3o_A           12 TLSGGCELT-VVLQDFSAAHSS-------ELSIQVGQTVELLERPSERPGWCLVRTTE   61 (82)
T ss_dssp             --CCCCEEE-ECSSCBCCCSTT-------CCCBCTTCEEEESSCTTSSTTEEEEEESS
T ss_pred             cccCCceEE-EEEeeecCCCCC-------eeeEcCCCEEEEEecCCCCCCEEEEEECC
Confidence            468888775 589999888776       8999999999999986  59999997543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=91.93  E-value=0.089  Score=43.24  Aligned_cols=21  Identities=24%  Similarity=0.559  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|..+|...
T Consensus         8 i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            8 MVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            789999999999999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=91.91  E-value=0.065  Score=49.56  Aligned_cols=21  Identities=24%  Similarity=0.624  Sum_probs=18.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +.|+||+|+|||||++.|+..
T Consensus         5 v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            5 IMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEESSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999999853

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=91.91  E-value=0.022  Score=43.26  Aligned_cols=41  Identities=29%  Similarity=0.745  Sum_probs=34.9

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      ....+++|+++|.+..++       +|+|..||++.++.+.++.||..
T Consensus        15 ~~~~~~~Alydy~a~~~~-------eLsf~~Gd~i~Vl~~~~~gWw~g   55 (83)
T 1neg_A           15 TGKELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKV   55 (83)
T ss_dssp             --CCEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEE
T ss_pred             CCceEEEEccccCCCCCC-------ccccCCCCEEEEEEecCCCEEEE
Confidence            567889999999998776       89999999999999988888876

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=91.90  E-value=0.088  Score=43.66  Aligned_cols=21  Identities=29%  Similarity=0.665  Sum_probs=19.4

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.+|...
T Consensus         7 i~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            7 VVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCccHHHHHHHHhcC
Confidence            789999999999999999864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=91.90  E-value=0.087  Score=49.56  Aligned_cols=25  Identities=28%  Similarity=0.594  Sum_probs=22.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++.++|+||+|+|||+|++.+++..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4569999999999999999998764

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=91.86  E-value=0.025  Score=40.70  Aligned_cols=38  Identities=26%  Similarity=0.539  Sum_probs=32.7

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         3 ~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   40 (65)
T 2nwm_A            3 AARLKFDFQAQSPK-------ELTLQKGDIVYIHKEVDKNWLEGE   40 (65)
T ss_dssp             EEEECSCBCCCSTT-------BCCBCTTCEEEEEECCTTTCEEEE
T ss_pred             EEEEeeeECCCCcC-------ccCCcCCCEEEEEEecCCCEEEEE
Confidence            57899999988766       899999999999998888888664

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=91.85  E-value=0.019  Score=41.85  Aligned_cols=41  Identities=24%  Similarity=0.579  Sum_probs=35.4

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      +.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+.
T Consensus         6 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~   46 (71)
T 1hsq_A            6 KCAVKALFDYKAQRED-------ELTFIKSAIIQNVEKQEGGWWRGDY   46 (71)
T ss_dssp             SSCCCCSSCCCCSSSS-------SCCCCTTCCCBSCCCBTTTEECCBC
T ss_pred             CeEEEECCCCCcCCCC-------ccCCCCCCEEEEEEecCCCEEEEEE
Confidence            4578999999988776       8999999999999998888988754

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.84  E-value=0.025  Score=43.12  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=33.3

Q ss_pred             eeeeeeecCCCCC--CCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        241 GMHVIAHFDYDPE--DDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       241 glYirAl~~~~p~--~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      ..|++|+++|.|.  .++       +|+|+.||++.++.+.+..||..
T Consensus        16 ~~~~~alydy~~~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g   56 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQWEG   56 (88)
T ss_dssp             CEEEEECSCBCCCTTCSS-------BCCBCTTCEEEEEEECTTSCEEE
T ss_pred             CEEEEEcccccCCCCCCC-------cccCCCCCEEEEEEecCCCEEEE
Confidence            4688999999966  555       79999999999999988889866

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=91.82  E-value=0.09  Score=50.81  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...++.|+||+|+|||||.+.|+-
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHC
Confidence            567899999999999999999985

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=91.80  E-value=0.023  Score=41.46  Aligned_cols=43  Identities=28%  Similarity=0.690  Sum_probs=34.7

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |...-+++|+++|.+..++       +|+|..||++.++...+..||..+
T Consensus         2 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   44 (73)
T 3thk_A            2 GTGKELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVE   44 (73)
T ss_dssp             ---CCEEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred             CCCCEEEEECcCCCcCCCC-------ccCCCCCCEEEEEECCCCCeEEEE
Confidence            3455688999999888766       799999999999999888888774

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=91.78  E-value=0.12  Score=49.56  Aligned_cols=27  Identities=26%  Similarity=0.559  Sum_probs=23.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .++.++|+||+|+|||+|+..+++..+
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            356899999999999999999997643

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.75  E-value=0.03  Score=42.36  Aligned_cols=41  Identities=27%  Similarity=0.469  Sum_probs=35.1

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhc--CChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ--DDPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~  287 (366)
                      ...|++|+++|.+..++       +|+|+.||++.++..  .+..||...
T Consensus         7 ~~~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~~Ww~g~   49 (85)
T 2dlp_A            7 GSGYVIALRSYITDNCS-------LLSFHRGDLIKLLPVATLEPGWQFGS   49 (85)
T ss_dssp             CCCEEEESSCBCCSSSS-------BCCBCTTCEEEECCCSCCCTTEEEEE
T ss_pred             CCEEEEECCCCCccCcC-------CccCcCCCEEEEEEccCCCCCeEEEE
Confidence            45789999999988776       899999999999987  888888663

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=91.75  E-value=0.098  Score=42.75  Aligned_cols=21  Identities=19%  Similarity=0.580  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|..+|...
T Consensus         6 i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999864

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.75  E-value=0.029  Score=40.46  Aligned_cols=43  Identities=26%  Similarity=0.627  Sum_probs=36.5

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +..+.+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         4 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~   46 (68)
T 1x2p_A            4 GSSGEEFVAIADYAATDET-------QLSFLRGEKILILRQTTADWWWGE   46 (68)
T ss_dssp             CCSCCEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCSSSEEEEE
T ss_pred             CCCCCEEEECceECCCCcC-------CcCCCCCCEEEEEEcCCCCEEEEE
Confidence            3456788999999988766       799999999999999888888774

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=91.74  E-value=0.079  Score=51.24  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...++.|+||+|+|||||.+.|+-
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCchHHHHHHHHhc
Confidence            457899999999999999999985

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=91.73  E-value=0.089  Score=49.40  Aligned_cols=39  Identities=21%  Similarity=0.357  Sum_probs=26.7

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      +-.|+|+|.+|||||||+.+|....-......+.||+..
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~   48 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMR   48 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeE
Confidence            345889999999999999999865322222334455543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=91.72  E-value=0.095  Score=50.71  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...++.|+||+|+|||||.+.|+-
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCchHHHHHHHHhc
Confidence            557899999999999999999985

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=91.72  E-value=0.084  Score=48.68  Aligned_cols=24  Identities=17%  Similarity=0.426  Sum_probs=21.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...+.|+||+|+|||||++.|+-.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999999999853

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=91.71  E-value=0.084  Score=51.66  Aligned_cols=44  Identities=14%  Similarity=0.247  Sum_probs=32.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE  146 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E  146 (366)
                      ....+.|+|++|+|||||.+.|...........+.||..|..+.
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~   62 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK   62 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeee
Confidence            44568999999999999999998742112344567788876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	366
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	4e-18
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	7e-18
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	2e-17
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	2e-13
d1kgda_	178	c.37.1.1 (A:) Guanylate kinase-like domain of Cask	1e-12
d1kjwa2	199	c.37.1.1 (A:526-724) Guanylate kinase-like domain	2e-12
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	1e-11
d1lvga_	190	c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu	2e-10
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	5e-10
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	2e-09
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	2e-09
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	3e-09
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	6e-09
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	7e-09
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	8e-09
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	9e-09
d1gkya_	186	c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac	1e-08
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	2e-08
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	2e-08
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	3e-08
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	3e-08
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-08
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	4e-08
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	4e-08
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	5e-08
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	6e-08
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	6e-08
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	7e-08
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	9e-08
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-08
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	1e-07
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-07
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	1e-07
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-07
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	1e-07
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	2e-07
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	2e-07
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-07
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	2e-07
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	2e-07
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	3e-07
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	3e-07
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	4e-07
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	4e-07
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	6e-07
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	7e-07
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-06
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	1e-06
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-06
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	1e-06
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	1e-06
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	1e-06
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	2e-06
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-06
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	2e-06
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-06
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	2e-06
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-06
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	3e-06
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	3e-06
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	4e-06
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	4e-06
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	4e-06
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	4e-06
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	4e-06
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	5e-06
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	6e-06
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	7e-06
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	8e-06
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	9e-06
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-05
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	1e-05
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	2e-05
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-05
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-05
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	2e-05
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	2e-05
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	2e-05
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	2e-05
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	2e-05
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	3e-05
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	3e-05
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-05
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	5e-05
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	6e-05
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	6e-05
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	6e-05
d1znwa1	182	c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu	7e-05
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	9e-05
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	1e-04
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-04
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-04
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-04
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	1e-04
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	1e-04
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	1e-04
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-04
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	2e-04
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	2e-04
d1k32a1	91	b.36.1.3 (A:763-853) Tricorn protease {Archaeon Th	2e-04
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	4e-04
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-04
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	4e-04
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	5e-04
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	5e-04
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	5e-04
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	7e-04
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	7e-04
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	0.001
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	0.001
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	0.001
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	0.001
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	0.001

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.8 bits (191), Expect = 4e-18
 Identities = 12/54 (22%), Positives = 20/54 (37%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
             V  +  Y    D   P +  G++F+  D LH+  +   +WW      E    
Sbjct: 24  FAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDI 77

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.5 bits (190), Expect = 7e-18
 Identities = 12/54 (22%), Positives = 19/54 (35%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
             V  +  Y    D  +P     +SF   D LH+  + + +WW      E    
Sbjct: 24  FAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEI 77

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 74.2 bits (182), Expect = 2e-17
 Identities = 13/60 (21%), Positives = 23/60 (38%)

Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
           K+      V  +  Y    +  +P   + +SF+  D LHV  + + +WW      E    
Sbjct: 16  KTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEI 75

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.6 bits (154), Expect = 2e-13
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
           G ++ A FDYD   D     + L  SF+ GD+LHVI   D  WWQA R   +  T
Sbjct: 1   GFYIRALFDYDKTKDCGFLSQAL--SFRFGDVLHVIDAGDEEWWQARRVHSDSET 53

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 1e-12
 Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 102 NEKRPIVLIGPPNIGRHELRQRLME-DSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQF 160
           + ++ +VL+G   +GR  ++  L+    DRFA  IPHT+RP K  E +G++Y+F++  Q 
Sbjct: 1   HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQM 60

Query: 161 ELDILARKFIEHGEYEKSYYG 181
             DI   +++E+G +E + YG
Sbjct: 61  MQDISNNEYLEYGSHEDAMYG 81

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.3 bits (153), Expect = 2e-12
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 102 NEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHF-ITRAQ 159
           +  RPI+++GP    +      L+ +  D+F + +PHT+RP ++ E+DG+DYHF  +R +
Sbjct: 7   HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREK 63

Query: 160 FELDILARKFIEHGEYEKSYYGLR 183
            E DI A KFIE G+Y    YG  
Sbjct: 64  MEKDIQAHKFIEAGQYNSHLYGTS 87

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (141), Expect = 1e-11
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          GAT+RNE D+VI+ R+VKGG A+++GLLHEGDE+LEINGIEIRGK ++ V D+L  + G 
Sbjct: 33 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGT 92

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.6 bits (138), Expect = 2e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 105 RPIVLIGPPNIGRHELRQRLME-DSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
           RP+VL GP   G+  L ++L +  S  F  ++ HT+R  + GE DG+DY+F+TR   + D
Sbjct: 1   RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 60

Query: 164 ILARKFIEHGEYEKSYY 180
           I A  FIEH E+  + Y
Sbjct: 61  IAAGDFIEHAEFSGNLY 77

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (131), Expect = 5e-10
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 1   GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT-G 59
           G  +   G  + +  ++  G A   G+L  GD ++ +    + G ++     +L  +T G
Sbjct: 41  GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIG 100

Query: 60  QEMTM 64
             + +
Sbjct: 101 TVLQI 105

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 1  GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G T++ NE +  IV R++ GG+  R G LH GDEI EINGI +  +++  +  +L  + G
Sbjct: 16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG 75

Query: 60 Q 60
           
Sbjct: 76 S 76

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 1  GATIR---NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57
          G TI       D +I+  + KGGLA+RTG +H GD IL IN   ++GK +     +L   
Sbjct: 17 GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM- 75

Query: 58 TGQEMTM 64
           G+ +T+
Sbjct: 76 AGETVTL 82

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (121), Expect = 3e-09
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           G  V A F Y+         ++L   FQ+GDI+ V+S+ +  W +   +G+ 
Sbjct: 5   GSQVEALFSYEATQP-----EDL--EFQEGDIILVLSKVNEEWLEGESKGKV 49

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (119), Expect = 6e-09
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 7/49 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           V A FD+DP++D      EL   F++GD +HV+   DPNWW+    G+ 
Sbjct: 4   VQALFDFDPQED-----GEL--GFRRGDFIHVMDNSDPNWWKGACHGQT 45

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.3 bits (118), Expect = 7e-09
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 7/49 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           V+A +DY  +       +E+  + +KGDIL +++  + +WW+      +
Sbjct: 3   VLALYDYQEKSP-----REV--TMKKGDILTLLNSTNKDWWKVEVNDRQ 44

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 8e-09
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 11  VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTMGRE 67
             + +++ GG A++TG L EG ++LE NGI +  K+   V  I+   +G+ E+ +  +
Sbjct: 51  AYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD 108

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 48.9 bits (117), Expect = 9e-09
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 7/49 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           V A FD++P++       EL  +F++GD++ +I++DDPNWW+       
Sbjct: 5   VQALFDFNPQES-----GEL--AFKRGDVITLINKDDPNWWEGQLNNRR 46

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (123), Expect = 1e-08
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 105 RPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
           RPIV+ GP   G+  L ++L  +  D F  ++  T+R  + GEV+G+DY+F++  +F+  
Sbjct: 2   RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61

Query: 164 ILARKFIEHGEYEKSYY 180
           I   +FIE  ++  +YY
Sbjct: 62  IKNNEFIEWAQFSGNYY 78

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          G  +++  + + V  V     A   G L  GD++L+ING    G S      +L    G+
Sbjct: 17 GLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE 75

Query: 61 EMTM 64
          ++TM
Sbjct: 76 KITM 79

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           +S  S    + V A F++   ++      EL  S  KGDI++V   ++  WW+    G  
Sbjct: 2   SSGSSGSHQLIVKARFNFKQTNE-----DEL--SVCKGDIIYVTRVEEGGWWEGTLNGRT 54

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (116), Expect = 3e-08
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G   RNEG  V +  V+ GG   + G L  GD+++ IN   + G S      I+
Sbjct: 26 GGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 79

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 51.4 bits (122), Expect = 3e-08
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 105 RPIVLIGPPNIGRHELRQRLMED--SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFEL 162
              ++  P   G+  L Q L++         ++ HT+R  + GEV G+ Y F+   +F+ 
Sbjct: 3   TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 62

Query: 163 DILARKFIEHGEYEKSYYGL 182
            I    F+EH E   +YYG 
Sbjct: 63  MISRDAFLEHAEVFGNYYGT 82

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
             G  +++G V+  G ADR G LH GDE++ ++GI + GK+   V D++
Sbjct: 30 DEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 4e-08
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
            V+A +DY P +       +L    +KGD   ++ + +  WW+A
Sbjct: 10  KVVALYDYMPMNA-----NDL--QLRKGDEYFILEESNLPWWRA 46

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 4e-08
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 1  GATIRNEGD-----AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV 55
          G  I   G       VI+  ++ GG A+++G L+ GD+I+ ING  + G  +     I+ 
Sbjct: 13 GVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK 72

Query: 56 GLTGQ 60
          GL  Q
Sbjct: 73 GLKNQ 77

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 8/52 (15%)

Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVIS-QDDPNWWQAYREGEE 292
           M  IA +D+    D      EL  SF++GDIL V++ + D NW++A   G++
Sbjct: 1   MEAIAKYDFKATAD-----DEL--SFKRGDILKVLNEECDQNWYKAELNGKD 45

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (111), Expect = 6e-08
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           V A +D++  +D      EL  +F+ G+++ V+   D NWWQ       
Sbjct: 5   VRALYDFEAVED-----NEL--TFKHGELITVLDDSDANWWQGENHRGT 46

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 6e-08
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 1  GATIR---NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G TI       + + V  V+  G A + G +  GD I+ IN + + G +   V  + 
Sbjct: 33 GFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLF 89

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 7e-08
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 1  GATIR----NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G  I            +  + +GG A   G L  G  ILE+NG+ +RGK       I+
Sbjct: 20 GIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARII 77

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (110), Expect = 9e-08
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
             A +D++  ++      EL   F+ G+++ V+   +P+WW      + 
Sbjct: 4   ARALYDFEALEE-----DEL--GFRSGEVVEVLDSSNPSWWTGRLHNKL 45

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 9e-08
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 228 DRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
             + + +  +      VIA +DY   ++      EL  SF KG +++V+++DDP+WWQ  
Sbjct: 21  GPSSERATPAFHPVCQVIAMYDYAANNE-----DEL--SFSKGQLINVMNKDDPDWWQGE 73

Query: 288 REGEE 292
             G  
Sbjct: 74  INGVT 78

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           V A FDY  + +      EL  +F K  I+  + + +  WW+    G++
Sbjct: 9   VKALFDYKAQRE-----DEL--TFIKSAIIQNVEKQEGGWWRGDYGGKK 50

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 8/54 (14%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
            GG   IA + Y   +       +L  +F +G+ + V  +D   WW        
Sbjct: 6   SGGEEYIALYPYSSVEP-----GDL--TFTEGEEILVTQKDG-EWWTGSIGDRS 51

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289
            +A +DY+   +      +L  SF KG+   +++  + +WW+A   
Sbjct: 3   FVALYDYEAITE-----DDL--SFHKGEKFQILNSSEGDWWEARSL 41

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
                 +V  +     A+R GLL  GD +L INGI     ++     +L
Sbjct: 34 ETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLL 83

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 7/43 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           V A FD++  D+     ++L   F+KGDIL +  + +  WW A
Sbjct: 4   VRALFDFNGNDE-----EDL--PFKKGDILRIRDKPEEQWWNA 39

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
            + R  GD +++  + KG +A RTG L  GD++L I+ I +   S+     IL      
Sbjct: 30 SPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL 89

Query: 61 -EMTMGRE 67
           ++ + ++
Sbjct: 90 VKLKIRKD 97

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          + +  V++   A + G L  GD I+E++G+++R  S     + +    G  +  
Sbjct: 38 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK-AGNPVVF 90

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           + +  G   +A   Y   +       E+  S  +G+ + VI +    WW   ++   
Sbjct: 9   EPNYAGEPYVAIKAYTAVEG-----DEV--SLLEGEAVEVIHKLLDGWWVIRKDDVT 58

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289
            G    A +DY   D       E+  SF+ GD +  +   D  W     +
Sbjct: 2   AGKIFRAMYDYMAADA-----DEV--SFKDGDAIINVQAIDEGWMYGTVQ 44

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          GA    E   + V  V +GG A R G +   D+I+E++GI + G + +    +L    G 
Sbjct: 25 GADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGN 84

Query: 61 -EMTMGRE 67
              +GRE
Sbjct: 85 VRFVIGRE 92

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          G TI  +   V V  V  GG A+R GL  + D +L++N   +       +   +      
Sbjct: 11 GFTICCDSP-VRVQAVDSGGPAERAGL-QQLDTVLQLNERPVEHWKCVELAHEIRS-CPS 67

Query: 61 EMTM 64
          E+ +
Sbjct: 68 EIIL 71

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
             A +DYD  +D      EL  +F + D +  I   D +WW    E 
Sbjct: 3   ATAEYDYDAAED-----NEL--TFVENDKIINIEFVDDDWWLGELEK 42

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           G   V+A +D+   +       +L    ++G    ++ ++D +WW+A
Sbjct: 1   GSEIVVAMYDFQATEA-----HDL--RLERGQEYIILEKNDLHWWRA 40

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 4e-07
 Identities = 19/54 (35%), Positives = 26/54 (48%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          G           + +V KG LAD  G L  GDE+LE NG  + G +   V +I+
Sbjct: 39 GKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNII 92

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 6e-07
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
            +A +DY+   +      +L  SF+KG+ L +++  + +WW A+   
Sbjct: 5   FVALYDYESRTE-----TDL--SFKKGERLQIVNNTEGDWWLAHSLS 44

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 7e-07
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 1   GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
             T   +   + +  +    +A + G + EGD I++INGIE++ +    V  +L     +
Sbjct: 40  YRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE-EAV-ALLTSEENK 97

Query: 61  EMTM 64
             ++
Sbjct: 98  NFSL 101

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          I+  +++GG+A+R G+   G  I+EING  +       +  IL      E+ M
Sbjct: 23 IICSLMRGGIAERGGV-RVGHRIIEINGQSVVATPHEKIVHILSN-AVGEIHM 73

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 10/52 (19%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN---WWQAYREGEE 292
           + A +DY+P++D      EL    ++GD + +I ++D +   WW A    +E
Sbjct: 7   IYALWDYEPQND-----DEL--PMKEGDCMTIIHREDEDEIEWWWARLNDKE 51

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           +S  S    +   A   +  + D       L  +F K DI+ V+ Q + NWW     G  
Sbjct: 2   SSGSSGVENLKAQALCSWTAKKD-----NHL--NFSKHDIITVLEQQE-NWWFGEVHGGR 53

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
           S   G  +    DY    +         +   +G+++ V++ +  N    Y+   +   
Sbjct: 3   SGSSGSTMTVIKDYYALKENE-------ICVSQGEVVQVLAVNQQNMCLVYQPASDHSP 54

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          V+V  V +GG A+R G + +GDEI+ ING  +   ++      L
Sbjct: 45 VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAAL 88

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
           G  + V+A +DY+         ++L  SFQKGD + V+ +    W 
Sbjct: 2   GIRIIVVALYDYEAIHH-----EDL--SFQKGDQMVVLEESGEWWK 40

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 1  GATIR----NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
          G ++      E   + V RV   GLA + G + +G+E+L ING  ++G + H    IL  
Sbjct: 23 GFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQ 82

Query: 57 LTGQEMTM 64
                 +
Sbjct: 83 AREPRQAV 90

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          + +  +V    A   G L  GD IL +NG ++R  +   V D++
Sbjct: 37 IFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLI 80

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          + V  V   G A   G L  GD+I+ +NG  + G +      IL   T   +T+
Sbjct: 32 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKR-TKGTVTL 84

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 6  NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
           +   + + R+V GGLA+ TGLL   DE++E+NGIE+ GK++  V D++V  +  
Sbjct: 35 EKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSN 89

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 5   RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
                 + +  ++ GG A + G L   D+++ +NG  + GKS H   + L
Sbjct: 51  TGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETL 100

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 7/62 (11%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTL 296
           S   G        Y          ++L  S   G ++ ++ ++   WWQ   +       
Sbjct: 3   SGSSGEIAQVTSAYVASGS-----EQL--SLAPGQLILILKKNTSGWWQGELQARGKKRQ 55

Query: 297 AG 298
            G
Sbjct: 56  KG 57

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 1  GATIR----NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
          G ++          + + R+    + DR+G LH GD IL I+G  +   S+     +L  
Sbjct: 30 GISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS 89

Query: 57 LTGQ 60
          ++ +
Sbjct: 90 ISEK 93

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 7/59 (11%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
           +S     G     A + +   +       EL  S      L ++   D      +   E
Sbjct: 5   SSGSEAEGNQVYFAVYTFKARNP-----NEL--SVSANQKLKILEFKDVTGNTEWWLAE 56

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 7/44 (15%)

Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
           G   IA +++    +     ++L   F KGD+L +++      W
Sbjct: 6   GTECIAKYNFHGTAE-----QDL--PFCKGDVLTIVAVTKDPNW 42

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
                 ++  +     A+R G+L  GD ++ INGI     +      +L
Sbjct: 41 ETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL 90

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN--WWQAYREGEE 292
             +A + +  E+       +L   F+KGD++ ++ + D    WW     G E
Sbjct: 3   KAVALYSFAGEES-----GDL--PFRKGDVITILKKSDSQNDWWTGRVNGRE 47

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (100), Expect = 4e-06
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          R     +++ ++ KG  AD+T  L  GD IL +NG ++   +       L   TG+E+ +
Sbjct: 26 RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK-TGKEVVL 84

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 4e-06
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTMGREA 68
          + V  VVKGG AD  G L  GD++L ++G  + G S     +++   +    + + ++ 
Sbjct: 33 IYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQG 91

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 5e-06
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 7/41 (17%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
           VIA   Y+P  D      +L   F+KG+ L ++ Q    W 
Sbjct: 9   VIALHSYEPSHD-----GDL--GFEKGEQLRILEQSGEWWK 42

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 6e-06
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           VIA +DY   D      +EL  + +  +  +++   + +WW+ 
Sbjct: 1   VIALYDYQTNDP-----QEL--ALRCDEEYYLLDSSEIHWWRV 36

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (99), Expect = 7e-06
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          G T+R     V V  +     A       EGD I+ I G++ +  ++  V  +L    G+
Sbjct: 29 GFTLRGNTP-VQVHFLDPHCSASL-AGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE 86

Query: 61 EMTM 64
          E+ M
Sbjct: 87 EVEM 90

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 8e-06
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 232 QTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
            +  +  G     +A + Y+P D       E  +    G  L+V    D + +    
Sbjct: 8   TSKQRYSGKVHLCVARYSYNPFDGPN-ENPEAELPLTAGKYLYVYGDMDEDGFYEGE 63

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 9e-06
 Identities = 13/54 (24%), Positives = 30/54 (55%)

Query: 11  VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
           + + R+ KG  ++++  +  GDEIL++ G  ++G +     +I+  L    +T+
Sbjct: 59  LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTI 112

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 1  GATIR--NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
          G  I    +G+ + +  ++ GG AD +G L +GD+IL +NG+++R  S       L    
Sbjct: 23 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-A 81

Query: 59 GQEMTM 64
          GQ +T+
Sbjct: 82 GQTVTI 87

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 1  GATIRNEGDA--VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
          G  +  E       +  V  G  A++ GL   GD ++E+NG  +  ++   V   +    
Sbjct: 17 GFHLHGEKGKLGQYIRLVEPGSPAEKAGL-LAGDRLVEVNGENVEKETHQQVVSRIRA-A 74

Query: 59 GQEMTM 64
             + +
Sbjct: 75 LNAVRL 80

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          + + +++ GG A + G L   D IL +N +++R  +     + L    G  + +
Sbjct: 33 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRL 85

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          G         + V  ++  G A+  G +H+GD +L +NG+ + G +     + L   TGQ
Sbjct: 29 GVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQ 87

Query: 61 EMTM 64
           + +
Sbjct: 88 VVHL 91

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 1  GATIRNEGDA---VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57
          G +IR   +    + V R+ + G A R G +  GD+I+EING   R  +     +++   
Sbjct: 25 GFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS- 83

Query: 58 TGQEMTM 64
           G+ + +
Sbjct: 84 GGRRVRL 90

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          + +  ++ G  A   G L  GD ILE+NG  + G       D++    G++M  
Sbjct: 38 LYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH-GGKKMRF 90

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
           S   G  V   F +   ++      +  +SF +GD+L ++  ++ + W      
Sbjct: 3   SGSSGQKVKTIFPHTAGNN------KTLLSFAQGDVLTLLIPEEKDGWLYGEHD 50

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 8/50 (16%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-NWWQAYREGEE 292
            +A +D+    D       L  S  KG+ L V+  +    W +A  +  +
Sbjct: 3   FVALYDFVASGD-----NTL--SITKGEKLRVLGYNHNGEWCEAQTKNGQ 45

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          + +G ++KGG     G +  GD +L++N I     S      +L
Sbjct: 31 IYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVL 74

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          G       +++ + ++++GG A + G L  GD +L +N   ++          L   T  
Sbjct: 23 GNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN-TSD 81

Query: 61 EMTM 64
           + +
Sbjct: 82 MVYL 85

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 7/54 (12%)

Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
           +S  S        A +    E D      EL  SF  G +   +       W  
Sbjct: 2   SSGSSGTPFRKAKALYACKAEHD-----SEL--SFTAGTVFDNVHPSQEPGWLE 48

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 11/49 (22%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQA 286
              A +D+ PE+       E+ ++ +KGD++ ++S+ DP     +WW+ 
Sbjct: 7   FARALYDFVPENP------EMEVALKKGDLMAILSKKDPLGRDSDWWKV 49

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 9/55 (16%)

Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP--NWWQAYREGEE 292
           G     A + ++  +       E+  SF  GDI+ V  +      W     +G  
Sbjct: 4   GSSGYRALYPFEARNHD-----EM--SFNSGDIIQVDEKTVGEPGWLYGSFQGNF 51

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          V V  +   G  D  G L   D +L++N +  R     +V  ++
Sbjct: 34 VYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRTRDFDCCLVVPLI 76

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT-G 59
          G TI +        RV +         L EGD I+EIN   ++  S   V DIL     G
Sbjct: 24 GFTIADSPT---GQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIG 80

Query: 60 QEMTM 64
           E ++
Sbjct: 81 SETSL 85

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          +++  V+ GG AD  GLL E D ++ +NG  +           L   +G+   +
Sbjct: 41 IVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK-SGKIAAI 91

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 1  GATIR--NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
          G  ++       VI+  +++GG A+++GL+  GD IL +N   +   S     ++L G+ 
Sbjct: 16 GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA 75

Query: 59 GQEMTM 64
           +   +
Sbjct: 76 SETHVV 81

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 24/71 (33%), Positives = 37/71 (52%)

Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
           R +VL GP  +G+  + + L E       ++  T+R  + GEVDG DYHFI   +F+  I
Sbjct: 3   RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 62

Query: 165 LARKFIEHGEY 175
              + +E  E 
Sbjct: 63  DQGELLEWAEI 73

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.2 bits (91), Expect = 9e-05
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
            +  V +GG+A R GL   GD ++E+NG  +       V +++    G  + +
Sbjct: 45 QYLESVDEGGVAWRAGL-RMGDFLIEVNGQNVVKVGHRQVVNMIRQ-GGNTLMV 96

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
             A  DY+          E+  +   GD++ V+ + +  WW    + +
Sbjct: 5   YRAIADYEKTSG-----SEM--ALSTGDVVEVVEKSESGWWFCQMKAK 45

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          + V ++V  G A + G L   D I+E+NG ++   +     +  
Sbjct: 43 IFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF 86

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 1  GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
          G       + + + +V   G A R G L  G  +LE+N   + G +      +L    G 
Sbjct: 36 GNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGD 94

Query: 61 EMTM 64
           +T+
Sbjct: 95 TLTV 98

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
            +GR++ G  ADR   L  GD IL +NG  I       +  ++    G  +T+
Sbjct: 45 HKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTL 97

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 9/45 (20%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD--PNWWQA 286
           V   + +    +     +EL  +F+KG+ + VI + +  P WW+ 
Sbjct: 9   VQTLYPFSSVTE-----EEL--NFEKGETMEVIEKPENDPEWWKC 46

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5  RNEGDAVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
           ++   VIV RV  G  AD     L+EGD+++ ING +I   +   V   +
Sbjct: 30 YDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI 80

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 1  GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
          G +I +     + V +V  G +A + GL   GD++LE NGI +R  +      I+     
Sbjct: 33 GISIVSGEKGGIYVSKVTVGSIAHQAGL-EYGDQLLEFNGINLRSATEQQARLIIGQ-QC 90

Query: 60 QEMTM 64
            +T+
Sbjct: 91 DTITI 95

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 5   RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
              G  + +  V  G  A+ +GL   GD+ILE+NG             +L       +T+
Sbjct: 42  AEYGLGIYITGVDPGSEAEGSGL-KVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTV 100

Query: 65  GRE 67
              
Sbjct: 101 KDV 103

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 8/60 (13%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          ++    + + R+  G  A +   L +GD ++ I+G+     +     + +       +++
Sbjct: 21 KDFNMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS-ASYNLSL 78

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMT 63
          + + + + + RV + G A R   +  GD++LE+NG+ ++G   H   + L G     +M 
Sbjct: 35 KGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 93

Query: 64 MGRE 67
          + RE
Sbjct: 94 VWRE 97

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 1  GATIRNEGDAVIVGRVVKGGL--------ADRTGLLHEGDEILEINGIEIRGK 45
              + +GD  +V +   G              G+   G  I +I+G  +   
Sbjct: 4  ACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAG 56

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
           +  + +D+   +       EL  S  K D+L ++      W      G+ 
Sbjct: 3   YAKSKYDFVARNS-----SEL--SVMKDDVLEILDDRRQWWKVRNASGDS 45

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 1  GATIR---NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57
          G +IR     G  + V  V  G LA++ GL   GD+IL +N   +   +       L G 
Sbjct: 24 GFSIRGGSEHGVGIYVSLVEPGSLAEKEGL-RVGDQILRVNDKSLARVTHAEAVKALKGS 82

Query: 58 TGQEMTMGRE 67
              +++   
Sbjct: 83 KKLVLSVYSA 92

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
            +   + +  V  G L+   G L  GD+I+E+NG++          ++L       +++
Sbjct: 30 PIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISI 88

Query: 65 GREA 68
             A
Sbjct: 89 VAAA 92

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
             +A   Y   +       E+  S  +G+ + VI +    WW   ++   
Sbjct: 2   PYVAIKAYTAVEG-----DEV--SLLEGEAVEVIHKLLDGWWVIRKDDVT 44

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
           +    +++ R+  G  A     L  GD IL I+G      +     D +      ++ +
Sbjct: 25 IDFNQPLVITRITPGSKAAA-ANLCPGDVILAIDGFGTESMTHADAQDRIKA-ASYQLCL 82

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.1 bits (83), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 12/53 (22%)

Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQAYREGE 291
           V A  DY   D       EL    + GD++ VI   +P      W    +E +
Sbjct: 15  VQAQHDYTATDTD-----EL--QLKAGDVVLVIPFQNPEEQDEGWLMGVKESD 60

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMT 63
          R+    +IV +V + G A+    L  GD I+ ING              +        + 
Sbjct: 26 RDFHTPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQ 84

Query: 64 MGRE 67
          + R 
Sbjct: 85 LDRS 88

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 11  VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTMGREA 68
           + V RV   G A +   L  GD+I++ NG             +L       E+ + RE 
Sbjct: 45  IFVTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 1  GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57
          G  I  +   G  V+V     GG A++ G    GD I+ ++G  ++G S++ V D+L G 
Sbjct: 8  GLEITYDGGSGKDVVVLTPAPGGPAEKAGARA-GDVIVTVDGTAVKGMSLYDVSDLLQGE 66

Query: 58 TGQEMTM 64
             ++ +
Sbjct: 67 ADSQVEV 73

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
             + Y  +DD      E+  +   GD + ++++D  + W          T
Sbjct: 4   VLYAYVQKDD-----DEI--TITPGDKISLVARDTGSGWTKINNDTTGET 46

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 5  RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
          +     + + +V+    A R   L EGD++L +N ++ +        +IL
Sbjct: 37 KASQLGIFISKVIPDSDAHR-AGLQEGDQVLAVNDVDFQDIEHSKAVEIL 85

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 1  GATIRNEGDA--VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
          GA + N+G    V+V  V  G  A + G L +GD I+  N   ++
Sbjct: 15 GAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK 58

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
          +  +VK   A R GLL     I EING  + G     + DIL   +G  +T+
Sbjct: 27 ITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILST-SGTVVTI 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.95
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	99.94
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.94
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.93
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	99.92
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.92
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.28
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.24
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.2
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.2
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.19
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.19
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.19
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.17
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.16
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.16
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.15
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.15
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.14
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.13
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.12
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.12
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.12
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.12
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.11
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.11
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.11
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.09
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.08
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.07
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.04
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.04
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.04
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.03
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.03
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.02
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.02
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.01
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.01
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.0
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.0
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	98.99
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	98.98
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.97
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.96
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.96
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.96
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.95
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	98.93
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.92
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.91
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	98.91
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.9
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.89
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	98.87
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.86
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.83
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.82
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.81
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.6
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.44
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.39
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.31
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.16
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.99
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.91
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.91
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.9
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	97.89
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.83
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	97.83
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	97.71
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.69
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.68
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	97.68
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.58
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	97.46
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.37
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	97.31
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.31
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.1
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.95
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.88
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.82
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.81
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.7
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.52
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.46
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.44
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.41
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.38
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.32
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.27
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.21
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.2
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.14
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.09
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.09
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.08
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.04
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.97
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	95.94
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.94
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.92
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.91
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.88
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.87
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	95.77
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.76
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.74
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.74
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.74
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	95.71
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.65
d1okkd2	207	GTPase domain of the signal recognition particle r	95.63
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	95.61
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	95.6
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.59
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.58
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.51
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	95.46
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.46
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	95.41
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	95.41
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.28
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.26
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.26
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.21
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.17
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	95.06
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.04
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	95.03
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.96
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.95
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.92
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	94.8
d2qy9a2	211	GTPase domain of the signal recognition particle r	94.72
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.7
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	94.66
d1j8yf2	211	GTPase domain of the signal sequence recognition p	94.64
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.49
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.42
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.41
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	94.38
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.33
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.13
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	94.12
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.11
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.07
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.99
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	93.89
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	93.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.88
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.83
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.77
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.75
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.75
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.72
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.68
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.66
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.65
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.58
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.56
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.47
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.4
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.37
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	93.34
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.33
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.27
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.24
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	93.18
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.18
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.17
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.13
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	93.02
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.01
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	92.94
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	92.91
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	92.9
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	92.89
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.86
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.84
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.8
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.79
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	92.79
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.74
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.74
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	92.73
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	92.71
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.64
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.64
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.63
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.6
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.56
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.52
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.51
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.47
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	92.44
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	92.44
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	92.39
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.38
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.36
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.35
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	92.34
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	92.21
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	92.2
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.18
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.1
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.1
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.03
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	92.01
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	91.96
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	91.92
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	91.9
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.83
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.81
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	91.75
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	91.74
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	91.73
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.7
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	91.67
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	91.65
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.62
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	91.6
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	91.58
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.55
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.54
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.51
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.49
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	91.48
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.46
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.44
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.39
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	91.33
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	91.3
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	91.27
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.25
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.23
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.2
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	91.2
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.18
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	91.15
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.13
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.07
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.06
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.01
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	90.97
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	90.97
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	90.97
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	90.93
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.89
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.86
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	90.85
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	90.8
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	90.75
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	90.72
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	90.7
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	90.66
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	90.64
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	90.61
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	90.6
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.58
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.54
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	90.52
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.37
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	90.37
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	90.36
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	90.33
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	90.21
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	90.12
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	90.02
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	90.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.98
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	89.88
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	89.83
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.81
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	89.78
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	89.7
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	89.63
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	89.55
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	89.54
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.42
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	89.4
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.38
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	89.34
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	89.1
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	89.05
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	89.05
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	89.03
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	89.01
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	88.89
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	88.8
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	88.63
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	88.63
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.49
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	88.43
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	88.33
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	88.29
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	88.28
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	88.27
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	88.18
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.12
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	87.94
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.89
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	87.77
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	87.75
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	87.69
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.65
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	87.43
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	87.36
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	87.34
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	87.32
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	86.88
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	86.67
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	86.54
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	86.46
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	86.33
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	85.64
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	85.41
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	85.09
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	84.95
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	84.3
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.2
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	83.67
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	83.43
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	82.8
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	82.66
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	81.76
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	81.23
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	81.21
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	80.67
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	80.57

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=9.2e-29  Score=222.42  Aligned_cols=140  Identities=28%  Similarity=0.437  Sum_probs=130.3

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc-cC-CcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED-SD-RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG  181 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~-~~-~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG  181 (366)
                      +++|||+|||||||+||+++|++. |. .+..+++||||+||++|.+|++|||||.++|++++++|.|++|++++|++||
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            478999999999999999999986 53 5788899999999999999999999999999999999999999999999999


Q ss_pred             chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959        182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK  261 (366)
Q Consensus       182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~  261 (366)
                                                                                                      
T Consensus        82 --------------------------------------------------------------------------------   81 (205)
T d1s96a_          82 --------------------------------------------------------------------------------   81 (205)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959        262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP  341 (366)
Q Consensus       262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~  341 (366)
                                                           |+.+++..++.+|++|++++++.++..++.....+++||+.|+
T Consensus        82 -------------------------------------t~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~~~~ifi~pp  124 (205)
T d1s96a_          82 -------------------------------------TSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP  124 (205)
T ss_dssp             -------------------------------------EEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECS
T ss_pred             -------------------------------------cccchHHHHHhcCCceeecCcHHHHHHHHhhhcccceeeeecc
Confidence                                                 7899999999999999999999999999877778899999999


Q ss_pred             CHHHHHHHHHhcCCCCCch
Q psy16959        342 PFELLKQKRIRRGDNFKTG  360 (366)
Q Consensus       342 ~~~~l~~~~~~r~~~~~~~  360 (366)
                      +.++|++|+.+|++.....
T Consensus       125 s~~~l~~RL~~Rg~~~~~~  143 (205)
T d1s96a_         125 SKIELDRRLRGRGQDSEEV  143 (205)
T ss_dssp             SHHHHHHHHHTTSCSCHHH
T ss_pred             chHHHHHHHHhcCCchHHH
Confidence            9999999999998865543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-27  Score=208.80  Aligned_cols=123  Identities=39%  Similarity=0.805  Sum_probs=114.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG  181 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG  181 (366)
                      ++|||||+|||||||+||+++|+++ |..|..++++|||+||++|.+|++|||||.++|+++++.|.|++|++++|++||
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YG   81 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeeccccee
Confidence            5789999999999999999999865 788999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959        182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK  261 (366)
Q Consensus       182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~  261 (366)
                                                                                                      
T Consensus        82 --------------------------------------------------------------------------------   81 (178)
T d1kgda_          82 --------------------------------------------------------------------------------   81 (178)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959        262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP  341 (366)
Q Consensus       262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~  341 (366)
                                                           |+.++++.++++|++|++++++.++..++.....|++||+.|+
T Consensus        82 -------------------------------------t~~~~i~~~~~~g~~~ildid~~g~~~lk~~~~~~~~IfI~pp  124 (178)
T d1kgda_          82 -------------------------------------TKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAP  124 (178)
T ss_dssp             -------------------------------------EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECC
T ss_pred             -------------------------------------eeeecccchhccCceEEeccchhhhhhhhccccccceeeEecc
Confidence                                                 7899999999999999999999999999888889999999987


Q ss_pred             C
Q psy16959        342 P  342 (366)
Q Consensus       342 ~  342 (366)
                      +
T Consensus       125 s  125 (178)
T d1kgda_         125 T  125 (178)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.3e-26  Score=204.60  Aligned_cols=137  Identities=33%  Similarity=0.702  Sum_probs=128.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccch
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLR  183 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~  183 (366)
                      |||||+|||||||+||+++|++. |..|..++++|||+|+++|.+|++|||+|.++|..+++.|.|+++++++|++||  
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg--   79 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYG--   79 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE--
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceee--
Confidence            79999999999999999999876 678999999999999999999999999999999999999999999999999999  


Q ss_pred             hhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhh
Q psy16959        184 TKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKEL  263 (366)
Q Consensus       184 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~  263 (366)
                                                                                                      
T Consensus        80 --------------------------------------------------------------------------------   79 (186)
T d1gkya_          80 --------------------------------------------------------------------------------   79 (186)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccC-CCCcEEEEEeCCC
Q psy16959        264 GMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSS-DLKPFVIFVAPPP  342 (366)
Q Consensus       264 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~-~~~p~vi~~~~~~  342 (366)
                                                         ++.+++..++..|++|++++.+.++..++.. +..+++||+.+++
T Consensus        80 -----------------------------------~~~~~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~~~~~i~~~~~~  124 (186)
T d1gkya_          80 -----------------------------------STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPS  124 (186)
T ss_dssp             -----------------------------------EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSC
T ss_pred             -----------------------------------cchhhHHHHhcCCCeEEecchHHHHHHHHHhhcccceEEEecCCc
Confidence                                               7899999999999999999999999888754 7789999999999


Q ss_pred             HHHHHHHHHhcCCCCC
Q psy16959        343 FELLKQKRIRRGDNFK  358 (366)
Q Consensus       343 ~~~l~~~~~~r~~~~~  358 (366)
                      .+.|++|+..|+....
T Consensus       125 ~e~l~~RL~~Rg~~~~  140 (186)
T d1gkya_         125 VEDLKKRLEGRGTETE  140 (186)
T ss_dssp             HHHHHHHHHHHSCSCH
T ss_pred             HHHHHHHHHhhccchh
Confidence            9999999999997533

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.8e-26  Score=200.72  Aligned_cols=137  Identities=39%  Similarity=0.736  Sum_probs=129.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccch
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLR  183 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~  183 (366)
                      |||||+||+||||+||+++|++. ++.|..++++|||+|+++|.+|++|+|||.++|+++++.|.|+++++++|++||  
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg--   78 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG--   78 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE--
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCccee--
Confidence            78999999999999999999875 778899999999999999999999999999999999999999999999999999  


Q ss_pred             hhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhh
Q psy16959        184 TKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKEL  263 (366)
Q Consensus       184 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~  263 (366)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (190)
T d1lvga_          79 --------------------------------------------------------------------------------   78 (190)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCH
Q psy16959        264 GMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPF  343 (366)
Q Consensus       264 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~  343 (366)
                                                         ++.++++.+++.|++|+++..+.++..++.....|++||+.|++.
T Consensus        79 -----------------------------------~~~~~v~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~I~i~~~~~  123 (190)
T d1lvga_          79 -----------------------------------TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSL  123 (190)
T ss_dssp             -----------------------------------EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCH
T ss_pred             -----------------------------------cccchhhhhhcCCCceeecchHhhhhhhhhccccceEEEEecchH
Confidence                                               788999999999999999999999999998888999999999999


Q ss_pred             HHHHHHHHhcCCCCC
Q psy16959        344 ELLKQKRIRRGDNFK  358 (366)
Q Consensus       344 ~~l~~~~~~r~~~~~  358 (366)
                      +.|++|+.+|+....
T Consensus       124 e~l~~RL~~R~~~~~  138 (190)
T d1lvga_         124 DVLEQRLRLRNTETE  138 (190)
T ss_dssp             HHHHHHHHHHTCSCH
T ss_pred             HHHHHHHhhccccch
Confidence            999999999986543

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=9.7e-26  Score=201.58  Aligned_cols=134  Identities=37%  Similarity=0.781  Sum_probs=123.2

Q ss_pred             CCCCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeec-CHHHHHHHHHhcceeEEEEEec
Q psy16959        100 RSNEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEK  177 (366)
Q Consensus       100 ~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~v-s~~ef~~~~~~g~fle~~~~~g  177 (366)
                      .+..+|||||+||   ||+++.++|++. |+.|..++++|||+||++|.+|++|||| +.++|+++++.|.|+++++++|
T Consensus         5 ~~~~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g   81 (199)
T d1kjwa2           5 EVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNS   81 (199)
T ss_dssp             ECCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETT
T ss_pred             cCCCCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecC
Confidence            4567899999999   499999999985 7789999999999999999999999999 6678999999999999999999


Q ss_pred             ccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCC
Q psy16959        178 SYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMY  257 (366)
Q Consensus       178 ~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~  257 (366)
                      ++||                                                                            
T Consensus        82 ~~YG----------------------------------------------------------------------------   85 (199)
T d1kjwa2          82 HLYG----------------------------------------------------------------------------   85 (199)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             Cccc----------------------------------------------------------------------------
Confidence            9999                                                                            


Q ss_pred             cchhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEE
Q psy16959        258 IPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIF  337 (366)
Q Consensus       258 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~  337 (366)
                                                               |+.++++.+++.|++|++++++.++..++.....|++||
T Consensus        86 -----------------------------------------t~~~~i~~~~~~gk~~lldid~~g~~~lk~~~~~~i~If  124 (199)
T d1kjwa2          86 -----------------------------------------TSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIF  124 (199)
T ss_dssp             -----------------------------------------EEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEE
T ss_pred             -----------------------------------------eeeeEEEehhcCCCcccccccchHHhhhhhhccceeEEe
Confidence                                                     789999999999999999999999999998888999999


Q ss_pred             EeCCCHHHHHHHHHhcC
Q psy16959        338 VAPPPFELLKQKRIRRG  354 (366)
Q Consensus       338 ~~~~~~~~l~~~~~~r~  354 (366)
                      +.|++.+.+++ +.+|+
T Consensus       125 I~pps~e~l~~-l~kr~  140 (199)
T d1kjwa2         125 IRPRSLENVLE-INKRI  140 (199)
T ss_dssp             ECCSSHHHHHH-HCTTS
T ss_pred             eccccHHHHHh-hhccc
Confidence            99999998875 44443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=5.9e-25  Score=192.63  Aligned_cols=137  Identities=26%  Similarity=0.474  Sum_probs=127.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccc--c
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYY--G  181 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~Y--G  181 (366)
                      +++|+|+||+||||+||++.|.++.+.+..+++||||+||++|.+|++|||+|.++|++++..+.|++++.+++++|  |
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g   81 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG   81 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCccccc
Confidence            57899999999999999999998766789999999999999999999999999999999999999999999998764  6


Q ss_pred             chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959        182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK  261 (366)
Q Consensus       182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~  261 (366)
                                                                                                      
T Consensus        82 --------------------------------------------------------------------------------   81 (182)
T d1znwa1          82 --------------------------------------------------------------------------------   81 (182)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959        262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP  341 (366)
Q Consensus       262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~  341 (366)
                                                           +...++..++..|++|++++.+.++..++.....|++||+.|+
T Consensus        82 -------------------------------------~~~~~~~~~~~~g~~~i~~~~~~g~~~l~~~~~~~~~i~i~~~  124 (182)
T d1znwa1          82 -------------------------------------TLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPP  124 (182)
T ss_dssp             -------------------------------------EEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECS
T ss_pred             -------------------------------------cccchhhhhhhcCCccccccccchhhhhhhcCcceeEEeeecc
Confidence                                                 6788999999999999999999999888877778999999999


Q ss_pred             CHHHHHHHHHhcCCCC
Q psy16959        342 PFELLKQKRIRRGDNF  357 (366)
Q Consensus       342 ~~~~l~~~~~~r~~~~  357 (366)
                      +.++|++|+.+|+...
T Consensus       125 s~e~L~~RL~~Rg~~~  140 (182)
T d1znwa1         125 SWQDLQARLIGRGTET  140 (182)
T ss_dssp             CHHHHHHHHHTTSCSC
T ss_pred             cHHHHHHHhhhcCcch
Confidence            9999999999998753

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=3.5e-12  Score=100.36  Aligned_cols=64  Identities=59%  Similarity=0.970  Sum_probs=60.6

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++++..++++||++|.+||+|+++|.|++||+|++|||+++.+++++++..+|+++.++++|+
T Consensus        33 G~~v~~~~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~   96 (100)
T d1va8a1          33 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV   96 (100)
T ss_dssp             CEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEE
T ss_pred             cEEEEecCCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEEE
Confidence            6788877889999999999999999999999999999999999999999999999999998876

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.8e-12  Score=96.94  Aligned_cols=56  Identities=21%  Similarity=0.429  Sum_probs=52.5

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||+.|.++|||+++|.|++||+|++|||+++.+++|++|+.+|+.+.+.++|+
T Consensus        36 ~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~   91 (96)
T d2fcfa1          36 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM   91 (96)
T ss_dssp             --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            47999999999999999999999999999999999999999999999999999886

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.6e-11  Score=94.93  Aligned_cols=56  Identities=29%  Similarity=0.419  Sum_probs=53.7

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||+.|.+||||+++|.|++||+|++|||+++.+++|++|+.+|+.+.+.++|+
T Consensus        31 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~v~L~   86 (92)
T d1t2ma1          31 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLE   86 (92)
T ss_dssp             CEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCeEEEE
Confidence            37999999999999999999999999999999999999999999999999988886

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.4e-12  Score=95.54  Aligned_cols=64  Identities=34%  Similarity=0.592  Sum_probs=58.8

Q ss_pred             CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++++.. +++++|+.|.+||||+++|.|++||+|++|||+++.+++++++..+|+.+.++++|.
T Consensus        16 G~~l~~~~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~   80 (88)
T d1kwaa_          16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK   80 (88)
T ss_dssp             CEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEE
T ss_pred             cEEEEEcCCCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            6777643 468999999999999999999999999999999999999999999999998888876

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.3e-11  Score=95.87  Aligned_cols=56  Identities=27%  Similarity=0.487  Sum_probs=53.6

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||++|.+||||+++|.|++||+|++|||+++.+++|++|+.+|+.+.+.++|+
T Consensus        33 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~   88 (94)
T d1wf8a1          33 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFV   88 (94)
T ss_dssp             EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            36899999999999999999999999999999999999999999999999999886

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.7e-11  Score=92.28  Aligned_cols=63  Identities=25%  Similarity=0.333  Sum_probs=57.2

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc-EEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~-v~l~   64 (366)
                      |+++....+++||..|.+||||+++| |++||+|++|||+++.+++++++..+|+++.+. +++.
T Consensus        17 G~~l~~~~~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~   80 (85)
T d1w9ea1          17 GLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMT   80 (85)
T ss_dssp             SEEEEEETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEE
Confidence            67888888899999999999999999 999999999999999999999999999988665 4443

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2e-11  Score=94.45  Aligned_cols=56  Identities=18%  Similarity=0.370  Sum_probs=53.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||..|.+||||+++|.|++||+|++|||+++.+++|++|+.+|+.+++.++|+
T Consensus        31 ~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~~v~L~   86 (92)
T d2fe5a1          31 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK   86 (92)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCCEEEEE
Confidence            57999999999999999999999999999999999999999999999999888887

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.5e-11  Score=97.81  Aligned_cols=56  Identities=20%  Similarity=0.351  Sum_probs=53.9

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||..|.++|||+++|.|++||+|++|||+++.+++|++|+.+|+.+.+.++|+
T Consensus        41 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~~~~v~l~   96 (107)
T d1uhpa_          41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQ   96 (107)
T ss_dssp             CCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEE
T ss_pred             CCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            47899999999999999999999999999999999999999999999999999887

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=2e-11  Score=95.59  Aligned_cols=56  Identities=21%  Similarity=0.447  Sum_probs=53.5

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||+.|.++|||+++|.|++||+|++|||+++.+++|++|+.+|+++...++|+
T Consensus        37 ~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~~~v~L~   92 (99)
T d1ozia_          37 GGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLL   92 (99)
T ss_dssp             CCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEE
T ss_pred             CCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCCCCeEEEE
Confidence            47999999999999999999999999999999999999999999999998888887

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.7e-11  Score=94.43  Aligned_cols=64  Identities=23%  Similarity=0.370  Sum_probs=58.0

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|..   ...++||+.|.++|||+++|.|++||+|++|||+++.+++|++|+.+|+.+.+.++|.
T Consensus        19 G~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~   85 (90)
T d1qava_          19 GISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLE   85 (90)
T ss_dssp             CEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             CEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            566753   2458999999999999999999999999999999999999999999999999988876

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=1.8e-11  Score=94.99  Aligned_cols=58  Identities=22%  Similarity=0.302  Sum_probs=54.5

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEeecc
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGRE   67 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~~~~   67 (366)
                      ++||+.|.+||||+++|.|++||+|++|||+++.+++|++|+.+|+.+.+.++|+..+
T Consensus        36 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~V~R   93 (94)
T d1ihja_          36 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT   93 (94)
T ss_dssp             EEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEe
Confidence            6899999999999999999999999999999999999999999999999999887443

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=2.6e-11  Score=94.91  Aligned_cols=56  Identities=39%  Similarity=0.729  Sum_probs=53.4

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||+.|.+||||+++|.|++||+|++|||+++.+++|++++.+|+.+.+.++|+
T Consensus        38 ~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~   93 (98)
T d1rzxa_          38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIIT   93 (98)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHTCTEEEEE
T ss_pred             CCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            47999999999999999999999999999999999999999999999999888876

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=2.4e-11  Score=95.86  Aligned_cols=65  Identities=28%  Similarity=0.500  Sum_probs=59.1

Q ss_pred             CcEEEE--eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEee
Q psy16959          1 GATIRN--EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG   65 (366)
Q Consensus         1 G~~i~~--~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~~   65 (366)
                      |++|..  ...++||+.|.+||+|+++|.|++||+|++|||+++.+++|++|+.+|+.+.+.++++.
T Consensus        23 G~~i~~~~~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~L~v   89 (102)
T d1tp5a1          23 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA   89 (102)
T ss_dssp             CEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEE
T ss_pred             cEEEEeccCCCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeEEEEE
Confidence            667764  24689999999999999999999999999999999999999999999999999998873

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.2e-11  Score=91.90  Aligned_cols=63  Identities=21%  Similarity=0.316  Sum_probs=57.4

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...  ..++||..|.+||||+++| |++||+|++|||.++.+++|++++.+|+++.++++|+
T Consensus        17 Gf~i~~~~~~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L~   81 (91)
T d1g9oa_          17 GFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL   81 (91)
T ss_dssp             CEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             eEEEEecCCCCCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            5677643  3579999999999999999 9999999999999999999999999999999999886

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=1.9e-11  Score=94.66  Aligned_cols=56  Identities=20%  Similarity=0.341  Sum_probs=53.7

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||+.|.+||||+++|.|++||+|++|||+++.+++|++|+.+|+.+.+.++|+
T Consensus        31 ~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~L~   86 (93)
T d1rgra_          31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY   86 (93)
T ss_dssp             CCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTTEEEEE
T ss_pred             CCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            47899999999999999999999999999999999999999999999988998887

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.6e-11  Score=89.31  Aligned_cols=62  Identities=24%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++. .+.++||.+|.+||||+++| |+.||+|++|||.++.+++++++..+++.+++++++.
T Consensus        11 Gf~l~-~~~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~   72 (77)
T d2f5ya1          11 GFTIC-CDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL   72 (77)
T ss_dssp             SEEEE-CSSSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             cEEEE-CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEE
Confidence            55665 35679999999999999999 9999999999999999999999999999999988876

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=4.9e-11  Score=92.76  Aligned_cols=64  Identities=36%  Similarity=0.539  Sum_probs=57.8

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...   ..++||..|.+||||+++|.|++||+|++|||+++.++++++++.+|+.+.+.++|+
T Consensus        17 G~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~   83 (95)
T d1n7ea_          17 GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK   83 (95)
T ss_dssp             CEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             eEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            5677532   357999999999999999999999999999999999999999999999998888887

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=4.3e-11  Score=93.73  Aligned_cols=56  Identities=29%  Similarity=0.433  Sum_probs=53.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||+.|.+||+|+++|.|++||+|++|||+++.+++|+++..+|+++++.++|+
T Consensus        38 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~v~L~   93 (99)
T d1p1da2          38 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK   93 (99)
T ss_dssp             CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEE
T ss_pred             CCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            47999999999999999999999999999999999999999999999999998886

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=4.5e-11  Score=95.53  Aligned_cols=64  Identities=25%  Similarity=0.521  Sum_probs=56.5

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++...  ..++||+.|.+||||+++|.|++||+|++|||+++.+++|++|..+|+++.+.+.++
T Consensus        16 G~~i~~~~~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~   81 (112)
T d1qaua_          16 GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV   81 (112)
T ss_dssp             SEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEE
T ss_pred             eEEEEeecCCCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEE
Confidence            6677643  458999999999999999999999999999999999999999999999987665554

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.2e-11  Score=90.47  Aligned_cols=56  Identities=29%  Similarity=0.410  Sum_probs=53.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||..+.++|+|+++|.|++||+|++|||+++.+++|++++.+|+++.+.++|+
T Consensus        30 ~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~v~L~   85 (88)
T d2fnea1          30 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLM   85 (88)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEE
T ss_pred             cCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            37899999999999999999999999999999999999999999999999998875

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.8e-11  Score=90.46  Aligned_cols=62  Identities=34%  Similarity=0.623  Sum_probs=53.8

Q ss_pred             CcEEEEeC-----CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEE
Q psy16959          1 GATIRNEG-----DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEM   62 (366)
Q Consensus         1 G~~i~~~~-----~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~   62 (366)
                      |+++...+     .++||..|.+||||+++|.|++||+|++|||+++.+++|+++..+|+.++...+
T Consensus        13 Gi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~   79 (85)
T d1x45a1          13 GVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSR   79 (85)
T ss_dssp             CEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSE
T ss_pred             CEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            56665321     368999999999999999999999999999999999999999999998866543

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.8e-11  Score=96.17  Aligned_cols=64  Identities=30%  Similarity=0.518  Sum_probs=56.7

Q ss_pred             CcEEEE----eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRN----EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~----~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|..    ...++||+.|.+||||+++|.|++||+|++|||.++.+++|++|+.+|+.+.+.++++
T Consensus        23 G~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~   90 (107)
T d1x6da1          23 GFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAV   90 (107)
T ss_dssp             SEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEE
T ss_pred             CEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEE
Confidence            566652    2468999999999999999999999999999999999999999999999988776655

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.6e-11  Score=95.23  Aligned_cols=56  Identities=27%  Similarity=0.520  Sum_probs=53.6

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||..|.++|||+++|.|++||+|++|||+++.+++|++|+.+|+.+.+.++|+
T Consensus        38 ~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~   93 (105)
T d1whaa_          38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALL   93 (105)
T ss_dssp             CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEE
T ss_pred             CCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCCCeEEEE
Confidence            47999999999999999999999999999999999999999999999998888887

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7.3e-11  Score=94.17  Aligned_cols=56  Identities=23%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||..|.++|||+++|.|++||+|++|||+++.+++|++|+.+|+.+++.++|+
T Consensus        36 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~v~l~   91 (110)
T d1um1a_          36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFL   91 (110)
T ss_dssp             SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            36999999999999999999999999999999999999999999999999998887

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.11  E-value=7.9e-11  Score=91.00  Aligned_cols=56  Identities=23%  Similarity=0.454  Sum_probs=51.3

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC---CCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL---TGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~---~~~v~l~   64 (366)
                      .++||+.|.+||||+++|.|++||+|++|||+++.+++|++|+.+|+.+   .+.++|.
T Consensus        29 ~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~   87 (92)
T d2f0aa1          29 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLT   87 (92)
T ss_dssp             CCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEE
T ss_pred             CCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEE
Confidence            4899999999999999999999999999999999999999999999864   5567665

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=1.5e-10  Score=89.26  Aligned_cols=63  Identities=19%  Similarity=0.289  Sum_probs=57.4

Q ss_pred             CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|...  ..++||..|.++|||+++| |+.||+|++|||.++.++++.+++.+|+.+++.++|+
T Consensus        22 Gf~i~~~~~~~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~   86 (91)
T d1m5za_          22 GFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV   86 (91)
T ss_dssp             SEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEE
T ss_pred             eEEEeccCCCCCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEE
Confidence            6677642  4589999999999999999 9999999999999999999999999999999998876

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.6e-11  Score=97.08  Aligned_cols=57  Identities=21%  Similarity=0.323  Sum_probs=54.2

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEee
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG   65 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~~   65 (366)
                      .++||..|.++|||+++|.|++||+|++|||+++.+++|++|+.+|+.+.++++|+.
T Consensus        44 ~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V  100 (111)
T d1ujua_          44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV  100 (111)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECC
T ss_pred             CCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHcCCCeEEEEE
Confidence            578999999999999999999999999999999999999999999999999988873

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=7e-11  Score=89.94  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=55.7

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+.+..   ...++||..|.+||||++++ |++||+|++|||+++.+++|++++.+|+.+.+.++|+
T Consensus        14 Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~   79 (85)
T d1rgwa_          14 GFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT   79 (85)
T ss_dssp             CEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEE
T ss_pred             CEEEEeecCCCCCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            455542   24578999999999999877 9999999999999999999999999999999998886

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.8e-11  Score=88.82  Aligned_cols=52  Identities=29%  Similarity=0.308  Sum_probs=49.9

Q ss_pred             EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +|+.|.+||||+++| |++||+|++|||+++.+++|++++.+|+.+++.++++
T Consensus        26 ~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~   77 (82)
T d1r6ja_          26 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT   77 (82)
T ss_dssp             EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEE
Confidence            789999999999999 9999999999999999999999999999999988876

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.4e-10  Score=87.04  Aligned_cols=52  Identities=29%  Similarity=0.536  Sum_probs=49.4

Q ss_pred             EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      +|.+|.+||+|+++| |++||+|++|||.++.+++|+++..+|+.+.+.++|.
T Consensus        23 ~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~   74 (79)
T d1y7na1          23 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMK   74 (79)
T ss_dssp             EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEE
T ss_pred             EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEE
Confidence            799999999999987 9999999999999999999999999999998888775

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.6e-10  Score=91.93  Aligned_cols=64  Identities=23%  Similarity=0.452  Sum_probs=58.2

Q ss_pred             CcEEEEe----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|...    ..++||..|.++|+|+++|.|++||+|++|||+++.+++|++++.+|+.+.+.++|+
T Consensus        30 Gi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v~l~   97 (117)
T d1v62a_          30 GISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLE   97 (117)
T ss_dssp             CCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEE
T ss_pred             CEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCcEEEE
Confidence            5677532    358999999999999999999999999999999999999999999999999998887

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=1.3e-10  Score=94.98  Aligned_cols=64  Identities=17%  Similarity=0.356  Sum_probs=58.3

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      |+++...+.+++|..|.+||||+++|.|++||+|++|||+++.+++|++++.+|++++  ..++|+
T Consensus        41 G~~i~~~~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~  106 (126)
T d1wifa_          41 GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK  106 (126)
T ss_dssp             CCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEE
T ss_pred             EEEEEecCCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEE
Confidence            5677777888999999999999999999999999999999999999999999999864  567776

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.4e-10  Score=89.22  Aligned_cols=54  Identities=26%  Similarity=0.380  Sum_probs=50.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+|||+.|.++|||++  .|++||+|++|||+++.+++|++|+.+|+.+++.++|+
T Consensus        43 ~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~v~L~   96 (103)
T d2h3la1          43 DGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI   96 (103)
T ss_dssp             CSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEE
T ss_pred             CCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            4799999999999986  49999999999999999999999999999999998887

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1e-10  Score=96.04  Aligned_cols=64  Identities=20%  Similarity=0.451  Sum_probs=55.8

Q ss_pred             CcEEEE------eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEEe
Q psy16959          1 GATIRN------EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMTM   64 (366)
Q Consensus         1 G~~i~~------~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l~   64 (366)
                      |++|..      ...++||..|.+||+|+++|.|++||+|++|||+++.+++|++|+.+|+++.. .++|+
T Consensus        43 G~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~  113 (130)
T d1i16a_          43 GFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIV  113 (130)
T ss_dssp             TEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEE
T ss_pred             CEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEE
Confidence            566652      13579999999999999999999999999999999999999999999998765 66666

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=3.6e-10  Score=89.02  Aligned_cols=55  Identities=25%  Similarity=0.321  Sum_probs=52.1

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .+++|..|.+||||+++| |++||+|++|||+++.+++|++++.+|++++++++|+
T Consensus        43 ~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~evv~~ik~~~~~v~L~   97 (104)
T d1q3oa_          43 ALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK   97 (104)
T ss_dssp             SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHHHHHHHcCCCeEEEE
Confidence            368999999999999999 9999999999999999999999999999998988876

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.4e-10  Score=92.18  Aligned_cols=55  Identities=31%  Similarity=0.518  Sum_probs=53.3

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ++||..|.++|||+++|.|++||+|++|||+++.+++|++|+.+|+.+.+.++|+
T Consensus        50 gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~  104 (117)
T d1ujda_          50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEIC  104 (117)
T ss_dssp             EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEE
Confidence            6999999999999999999999999999999999999999999999999998887

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=1.9e-10  Score=89.23  Aligned_cols=64  Identities=22%  Similarity=0.196  Sum_probs=56.3

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEee
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG   65 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~~   65 (366)
                      |++|...   +.++||..|.++|||++++ |++||+|++|||+++.+++|++|+.+|+.+.+.++|+.
T Consensus        19 Gf~i~gg~d~~~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V   85 (94)
T d1vb7a_          19 GFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL   85 (94)
T ss_dssp             SBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEE
T ss_pred             CEEEEeeccCCCCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            4555432   2468999999999999988 99999999999999999999999999999999999874

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.9e-10  Score=91.61  Aligned_cols=63  Identities=27%  Similarity=0.430  Sum_probs=57.4

Q ss_pred             CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|... ..++||..|.++|||+++| |++||+|++|||+++.+++|++|+.+|+.+.+.++|+
T Consensus        33 G~~i~gg~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~   96 (117)
T d1uita_          33 GISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITIL   96 (117)
T ss_dssp             CEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEE
T ss_pred             CEEEEccCCCCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEE
Confidence            5677643 4689999999999999988 9999999999999999999999999999998888887

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.7e-10  Score=91.25  Aligned_cols=55  Identities=25%  Similarity=0.339  Sum_probs=52.8

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ++||..|.+||||+++|.|++||+|++|||+++.++++++++.+|+.+.+.++|+
T Consensus        44 ~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~~~v~l~   98 (114)
T d1uewa_          44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLR   98 (114)
T ss_dssp             SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEE
T ss_pred             CEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcCCCeEEEE
Confidence            5899999999999999999999999999999999999999999999988988887

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.8e-10  Score=87.87  Aligned_cols=55  Identities=29%  Similarity=0.547  Sum_probs=52.2

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||+.|.+||||+++| |++||+|++|||+++.+++|.+++.+|+.+.+.++|+
T Consensus        39 ~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~   93 (97)
T d1x5qa1          39 EGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR   93 (97)
T ss_dssp             CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhCCCCEEEEE
Confidence            479999999999999999 9999999999999999999999999999988888776

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=3.2e-10  Score=89.49  Aligned_cols=62  Identities=24%  Similarity=0.414  Sum_probs=53.9

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+++..   ...++||..|.++|||+++| |++||+|++|||+++.+++|++|+.+|+.+. .++++
T Consensus        30 Gf~i~gg~~~~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-~v~l~   94 (104)
T d1wi2a_          30 GFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EISMR   94 (104)
T ss_dssp             SEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS-SEEEE
T ss_pred             ceEEEccccCCCCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC-eEEEE
Confidence            566652   23579999999999999999 9999999999999999999999999999864 56665

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=2.2e-10  Score=89.12  Aligned_cols=58  Identities=29%  Similarity=0.433  Sum_probs=51.5

Q ss_pred             CcEEEE-----eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC
Q psy16959          1 GATIRN-----EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT   58 (366)
Q Consensus         1 G~~i~~-----~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~   58 (366)
                      |+.|..     .+.++||+.|.+||+|+++|.|++||+|++|||+++.+++|++|+.+|+.+.
T Consensus        21 G~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~   83 (96)
T d1wi4a1          21 GLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK   83 (96)
T ss_dssp             CEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred             CEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            566653     2357999999999999999999999999999999999999999999999863

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.4e-10  Score=87.72  Aligned_cols=62  Identities=23%  Similarity=0.425  Sum_probs=53.3

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+.|...   ..++||..|.+||||+++| |++||+|++|||+++.+++|++|+.+|+.+.. ++++
T Consensus        23 G~~i~~g~~~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~~-~~l~   87 (101)
T d1x5na1          23 GCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTIS   87 (101)
T ss_dssp             CEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCSS-EEEE
T ss_pred             cEEEeccCCCCCCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCCC-EEEE
Confidence            5666532   2489999999999999998 99999999999999999999999999999765 4443

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.1e-10  Score=90.42  Aligned_cols=64  Identities=36%  Similarity=0.610  Sum_probs=54.4

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      |++|..   .+.++||..|.++|||+++|.|++||+|++|||+++.+++|++|+.+|+.+.  ..++|.
T Consensus        23 G~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~   91 (103)
T d1uepa_          23 GFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLT   91 (103)
T ss_dssp             CEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEE
T ss_pred             eEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEE
Confidence            455642   2356899999999999999999999999999999999999999999999764  356654

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.3e-10  Score=91.01  Aligned_cols=54  Identities=26%  Similarity=0.369  Sum_probs=49.4

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQE   61 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v   61 (366)
                      ..++||+.+.++|||+++|.|++||+|++|||+++.+++|++++.+|+.+...+
T Consensus        37 ~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~   90 (99)
T d1x5ra1          37 SSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAH   90 (99)
T ss_dssp             SSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            357899999999999999999999999999999999999999999999765443

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=3.8e-10  Score=92.27  Aligned_cols=59  Identities=24%  Similarity=0.345  Sum_probs=53.1

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC-------CCcEEEeecc
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-------TGQEMTMGRE   67 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~-------~~~v~l~~~~   67 (366)
                      .++||..|.+||+|+++|.|++||+|++|||+++.+++|++|+.+|+.+       .++++|+..+
T Consensus        55 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R  120 (127)
T d1wg6a_          55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILR  120 (127)
T ss_dssp             EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred             CCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEee
Confidence            3789999999999999999999999999999999999999999999976       5677777433

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.9e-10  Score=89.04  Aligned_cols=55  Identities=35%  Similarity=0.502  Sum_probs=50.4

Q ss_pred             eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959         10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus        10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      ++||+.|.+||||+++|.|++||+|++|||+++.+++|++|+.+|+.+.  ..++++
T Consensus        48 gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~  104 (108)
T d2cssa1          48 GAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEII  104 (108)
T ss_dssp             EEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEE
T ss_pred             CEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEE
Confidence            8999999999999999999999999999999999999999999998763  456654

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.2e-10  Score=89.03  Aligned_cols=63  Identities=29%  Similarity=0.436  Sum_probs=53.7

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|..   ...++||..|.++|||+++| |++||+|++|||+++.++++++++.+|+.....+.++
T Consensus        24 G~~i~gg~~~~~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~~~l~V   89 (101)
T d1ueza_          24 GFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSV   89 (101)
T ss_dssp             SEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSSSCCEEE
T ss_pred             CEEEEecccCCCCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCCCEEEEE
Confidence            566653   23479999999999999999 9999999999999999999999999999876544433

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=7.3e-10  Score=90.04  Aligned_cols=64  Identities=23%  Similarity=0.312  Sum_probs=55.1

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      |++|..   .+.++||..|.++|+|+++|.|++||+|++|||+++.+++|++|+.+|+.+.  ..+.|+
T Consensus        33 G~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~  101 (123)
T d1ueqa_          33 GFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV  101 (123)
T ss_dssp             SEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE
T ss_pred             CEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence            455542   2467999999999999999999999999999999999999999999999874  446665

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.4e-10  Score=89.18  Aligned_cols=64  Identities=27%  Similarity=0.339  Sum_probs=56.7

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|...   ..+++|..|.++|+|+++|.|++||+|++|||+++.+++|++|+.+|+.+...++++
T Consensus        25 G~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v~l~   91 (103)
T d1wfva_          25 GFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL   91 (103)
T ss_dssp             SBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEE
T ss_pred             CEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCEEEEE
Confidence            5566532   347999999999999999999999999999999999999999999999988887776

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=7e-10  Score=87.36  Aligned_cols=63  Identities=21%  Similarity=0.322  Sum_probs=56.0

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|...   +.++||..+.++++|++.+ |++||+|++|||+++.+++|++|+++|+.+.+.+.|+
T Consensus        18 Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~   83 (103)
T d1wf7a_          18 GFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT   83 (103)
T ss_dssp             SCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEE
T ss_pred             cEEEEcccCCCCCEEEEecCCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            5666543   3479999999999999866 9999999999999999999999999999999999887

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=5.7e-10  Score=90.58  Aligned_cols=56  Identities=20%  Similarity=0.332  Sum_probs=50.8

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||..|.++|||+++|.|++||+|++|||+++.+++|++++.+|+.+...+.+.
T Consensus        45 ~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~  100 (122)
T d1v5qa_          45 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVT  100 (122)
T ss_dssp             SCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEE
T ss_pred             CCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCCCceEEE
Confidence            45899999999999999999999999999999999999999999999877665433

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=3.5e-10  Score=90.33  Aligned_cols=62  Identities=26%  Similarity=0.325  Sum_probs=53.6

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l~   64 (366)
                      |++|.. +.+++|..|.++|||+++| |++||+|++|||+++.+++|++++.+|+.+.+ .++|.
T Consensus        29 Gf~i~g-~~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~   91 (111)
T d1vaea_          29 GFTLRG-NTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMK   91 (111)
T ss_dssp             SCCEES-SSSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEE
T ss_pred             CEEEEC-CccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEE
Confidence            556642 4568999999999999999 99999999999999999999999999998754 45554

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.2e-09  Score=89.41  Aligned_cols=62  Identities=29%  Similarity=0.364  Sum_probs=53.4

Q ss_pred             CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|..   .+.++||..|.+||+|+++| |++||+|++|||+++.+++|++|+.+|+.+ +.+.++
T Consensus        35 Gf~i~gg~~~~~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~-~~v~l~   99 (128)
T d1uf1a_          35 GLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILT   99 (128)
T ss_dssp             CEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEEEE
T ss_pred             CEEEEeeccCCCCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-CcEEEE
Confidence            566653   23479999999999999999 999999999999999999999999999885 456655

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=7.1e-10  Score=87.30  Aligned_cols=57  Identities=30%  Similarity=0.468  Sum_probs=50.5

Q ss_pred             CcEEEEe----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959          1 GATIRNE----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL   57 (366)
Q Consensus         1 G~~i~~~----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~   57 (366)
                      |++|...    ..++||..|.++|||+++|.|++||+|++|||+++.+++|++|+.+|+.+
T Consensus        20 G~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a   80 (103)
T d1ufxa_          20 GIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA   80 (103)
T ss_dssp             CEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred             CEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHc
Confidence            5666521    23589999999999999999999999999999999999999999999975

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=98.87  E-value=3.3e-09  Score=81.60  Aligned_cols=63  Identities=30%  Similarity=0.518  Sum_probs=54.5

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc-EEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~-v~l~   64 (366)
                      |+++...   +.+++|..+.++|||+++| |++||.|++|||.++.++++++++.+|++..++ +.+.
T Consensus         8 Gi~i~~~~~~~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~   74 (92)
T d1fc6a3           8 GLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVV   74 (92)
T ss_dssp             SEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEE
T ss_pred             EEEEEEcCCCCceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEE
Confidence            5666653   3579999999999999999 999999999999999999999999999977665 5554

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=1.7e-09  Score=87.25  Aligned_cols=64  Identities=25%  Similarity=0.297  Sum_probs=54.7

Q ss_pred             CcEEEEe----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC----CCcEEEe
Q psy16959          1 GATIRNE----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL----TGQEMTM   64 (366)
Q Consensus         1 G~~i~~~----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~----~~~v~l~   64 (366)
                      |+.|...    .+++||..|.++|+|+++|.|++||+|++|||+++.+++|++|+.+|+.+    ...++|+
T Consensus        31 G~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~  102 (118)
T d1v6ba_          31 DLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV  102 (118)
T ss_dssp             CCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEE
Confidence            5666532    24799999999999999999999999999999999999999999999865    3456665

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=1.7e-09  Score=85.06  Aligned_cols=63  Identities=21%  Similarity=0.265  Sum_probs=55.4

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |++|...   ..++||+.|.++++|+.++ |++||+|++|||+++.+++|++|+.+|+.+.+.++|+
T Consensus        18 Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~   83 (103)
T d1v5la_          18 GFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK   83 (103)
T ss_dssp             SBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECE
T ss_pred             CEEEEeecCCCCCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            4555432   3479999999999999887 9999999999999999999999999999998888887

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5.5e-09  Score=82.46  Aligned_cols=64  Identities=31%  Similarity=0.414  Sum_probs=53.3

Q ss_pred             CcEEEEe---CCeEEEEEEcCCchhccc-CCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC----CcEEEe
Q psy16959          1 GATIRNE---GDAVIVGRVVKGGLADRT-GLLHEGDEILEINGIEIRGKSIHIVCDILVGLT----GQEMTM   64 (366)
Q Consensus         1 G~~i~~~---~~gi~I~~v~~gs~A~~~-G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~----~~v~l~   64 (366)
                      |+++...   ..++||++|.+||||+++ |.|++||+|++|||+++.+++|++|+.+|+.+.    ..+.|+
T Consensus        23 G~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~   94 (106)
T d2cs5a1          23 GFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL   94 (106)
T ss_dssp             SEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred             cEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEE
Confidence            5666532   357999999999999995 669999999999999999999999999998653    345554

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=2.1e-09  Score=84.57  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=50.2

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      .++||..|.+||||+ .+ |++||+|++|||+++.+++|++|+.+|+++.+.++++
T Consensus        39 ~~i~V~~v~~gs~A~-~~-L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~l~   92 (104)
T d2csja1          39 TSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIV   92 (104)
T ss_dssp             CBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEE
T ss_pred             CCEEEEEECCCChhh-cC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            468999999999997 44 9999999999999999999999999999998888887

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.1e-08  Score=81.24  Aligned_cols=62  Identities=23%  Similarity=0.408  Sum_probs=50.5

Q ss_pred             CcEEEE-----eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC-CCcEEEe
Q psy16959          1 GATIRN-----EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-TGQEMTM   64 (366)
Q Consensus         1 G~~i~~-----~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~-~~~v~l~   64 (366)
                      |++|..     .+.+|||..|.+||||+++|.|++||+|++|||+++.+  +.++..+|+.+ .+.++++
T Consensus        35 G~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~~~~~v~l~  102 (124)
T d1wh1a_          35 GLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLL  102 (124)
T ss_dssp             CEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEE
T ss_pred             cEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhCCCCcEEEE
Confidence            566642     24579999999999999999999999999999999975  67788888765 4556665

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.4e-07  Score=69.34  Aligned_cols=61  Identities=28%  Similarity=0.198  Sum_probs=45.3

Q ss_pred             CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~   64 (366)
                      |++|.....+.++.   ..++++..+.|++||+|++|||+++.+++|++|+++||.+.  ..++|+
T Consensus        24 Gf~i~g~~~~~~~~---~~~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~   86 (96)
T d1ujva_          24 GFTIADSPTGQRVK---QILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLI   86 (96)
T ss_dssp             SEEEEEETTEEEEE---EESCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEE
T ss_pred             cEEEEeeCCCceEe---eccCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence            45665544444333   33445555569999999999999999999999999999763  466666

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.39  E-value=5.3e-07  Score=68.79  Aligned_cols=62  Identities=18%  Similarity=0.282  Sum_probs=53.8

Q ss_pred             CcEEEEeCCeEEEEEEcCC--------chhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          1 GATIRNEGDAVIVGRVVKG--------GLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         1 G~~i~~~~~gi~I~~v~~g--------s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      |+.++..++++.|.++.+|        |||+++|.+++||.|++|||.++.+.  +++..+|++..++.+.+
T Consensus         4 G~d~~~~~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~--~~~~~~l~g~~G~~V~L   73 (91)
T d1k32a1           4 ACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAG--SNIYRVLSEKAGTSARI   73 (91)
T ss_dssp             SEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTT--BCHHHHHHTTTTSEEEE
T ss_pred             cEEEEEECCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCc--ceeEEEEecCCCCEEEE
Confidence            6778888999999999998        99999993389999999999999876  47889999888877665

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.31  E-value=5.4e-07  Score=68.12  Aligned_cols=61  Identities=16%  Similarity=0.251  Sum_probs=46.0

Q ss_pred             CcEEEE--eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC-C-CcEEEe
Q psy16959          1 GATIRN--EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-T-GQEMTM   64 (366)
Q Consensus         1 G~~i~~--~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~-~-~~v~l~   64 (366)
                      |+.+..  ...|++|..|.++|||+++| |++||.|++|||..+.+.  ++....+... . ..+.+.
T Consensus         6 Gv~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~--~~~~~~i~~~~~g~~v~l~   70 (88)
T d2z9ia1           6 GVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALT   70 (88)
T ss_dssp             CEEEECCC-CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEE
T ss_pred             eEEEEecCCCCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcH--HHHHHHHHhCCCCCEEEEE
Confidence            455543  34589999999999999999 999999999999999754  5666666443 3 454554

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=4.6e-07  Score=68.57  Aligned_cols=54  Identities=24%  Similarity=0.309  Sum_probs=47.1

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..|++|..|.++|||+++| |++||+|++|||.++.  +.+++..+++..++.+.+.
T Consensus        24 ~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~   77 (88)
T d1ky9b2          24 DQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALN   77 (88)
T ss_dssp             TSCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEE
T ss_pred             CCeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEE
Confidence            4689999999999999999 9999999999999996  5688999998777666554

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.99  E-value=2.8e-06  Score=69.08  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=22.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+++|+|+||+||||||++++|++..
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            46789999999999999999997653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.91  E-value=4.7e-06  Score=69.00  Aligned_cols=56  Identities=9%  Similarity=0.045  Sum_probs=34.7

Q ss_pred             HHHHHHHcCCeEEEcccchhh--hccccCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCc
Q psy16959        303 AIRTVVNAGKICVLNLHPQSL--KILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFKT  359 (366)
Q Consensus       303 ~i~~vir~~k~~~l~~~p~~~--~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~  359 (366)
                      .+......+..++++......  ..+........++++. .+.+++.+|+.+|+.....
T Consensus        70 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~e~~~~R~~~R~~~~~~  127 (176)
T d1zp6a1          70 VAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLR-TTAAEAIERCLDRGGDSLS  127 (176)
T ss_dssp             HHHHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEE-CCHHHHHHHHHTTCTTSCC
T ss_pred             HHHHHHhcCCCeEecccccHHHHHHHHhcccccccccCC-CCHHHHHHHHHhCCCcccc
Confidence            345556667777777766433  2222223333445555 7789999999999876643

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.91  E-value=4.4e-05  Score=62.79  Aligned_cols=52  Identities=17%  Similarity=0.179  Sum_probs=33.9

Q ss_pred             HHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959        302 DAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNF  357 (366)
Q Consensus       302 ~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~  357 (366)
                      +.+..++..+..++++.........+   ....+|++. .+.+.|.+|+.+|+...
T Consensus        69 ~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~vI~L~-~~~e~l~~Rl~~R~~~~  120 (174)
T d1y63a_          69 DFMEPIMVSRGNHVVDYHSSELFPER---WFHMVVVLH-TSTEVLFERLTKRQYSE  120 (174)
T ss_dssp             HHHHHHHTSSSEEEEECSCCTTSCGG---GCSEEEEEE-CCHHHHHHHHHHTTCCH
T ss_pred             HHHHhhhhhcccccccHHHHHHHHHh---cCceEEEEE-CCHHHHHHHHHhCCCcc
Confidence            34556776777777777664332222   133566666 67999999999998653

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.90  E-value=8.1e-06  Score=66.95  Aligned_cols=27  Identities=26%  Similarity=0.528  Sum_probs=23.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+++|+|+||+||||||++++|++..+
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            457899999999999999999998753

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.3e-05  Score=61.47  Aligned_cols=53  Identities=26%  Similarity=0.367  Sum_probs=44.7

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~   64 (366)
                      ..|++|..|.++|||+++| |++||.|++|||..+.+  .+++...++ ...++.+.
T Consensus        30 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s--~~dl~~~l~-~g~~v~l~   82 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVR-TQSQLAVQ   82 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHT-TCSSEEEE
T ss_pred             CCcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCC--HHHHHHHhc-CCCEEEEE
Confidence            3589999999999999999 99999999999999964  578888885 35555554

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=2.3e-07  Score=71.43  Aligned_cols=49  Identities=43%  Similarity=0.766  Sum_probs=42.6

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHccc
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE  291 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  291 (366)
                      ||||||+|||.|..|+..++.  +|+|++||+++++++.++.||.++.+..
T Consensus         1 ~~~vrAlydy~~~~d~~~~~~--eLsf~kGdil~V~~~~d~~WW~~~~~~~   49 (96)
T d1kjwa1           1 GFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHS   49 (96)
T ss_dssp             CEEEEESSCBCHHHHHCCCSS--BCCBCTTCEEEEEECCSSSEEEEEECCS
T ss_pred             CEEEEEcccCcCCcCCCCCCc--cceEcCCCEEEEeeeccCceEEEEEccC
Confidence            799999999999877666665  7999999999999999999998876543

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=2.3e-07  Score=76.12  Aligned_cols=51  Identities=24%  Similarity=0.421  Sum_probs=47.6

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHccc
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE  291 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  291 (366)
                      -|+|||+|+|.|..|+.+|+...+|+|+.||+++++++.+.+||.++.+..
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~   73 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKE   73 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESST
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccC
Confidence            599999999999999999999999999999999999999999999976554

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=1.7e-06  Score=71.60  Aligned_cols=53  Identities=23%  Similarity=0.382  Sum_probs=48.9

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHccc
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE  291 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  291 (366)
                      +.-||+||+|+|.|..|+..++...+|+|++||+++++++.+.+||.+++.+.
T Consensus        21 ~~~f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~   73 (145)
T d1vyva1          21 PVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKE   73 (145)
T ss_dssp             CCCEEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESST
T ss_pred             CccEEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCC
Confidence            67799999999999999999999999999999999999999999999976543

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.69  E-value=6.7e-05  Score=57.93  Aligned_cols=53  Identities=26%  Similarity=0.310  Sum_probs=43.8

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC-CCc-EEEe
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-TGQ-EMTM   64 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~-~~~-v~l~   64 (366)
                      ..|++|..|.++|||+. + |++||.|++|||..+.  +.++....|... .|. +.+.
T Consensus         2 p~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~   56 (103)
T d2hgaa1           2 PDGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINIT   56 (103)
T ss_dssp             CCCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEE
Confidence            46899999999999986 6 9999999999999996  568888888764 344 4444

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.68  E-value=3.5e-05  Score=65.31  Aligned_cols=28  Identities=14%  Similarity=0.357  Sum_probs=24.1

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+|.+|+|+||+||||||++++|++..+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3556789999999999999999998753

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.68  E-value=1.6e-06  Score=66.49  Aligned_cols=53  Identities=23%  Similarity=0.449  Sum_probs=48.2

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHccc
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE  291 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  291 (366)
                      ...+|+||+|||.|..|+.+|+...+|+|++||++.++++.+.+||..+..+.
T Consensus        19 p~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~   71 (96)
T d1t0ha_          19 PVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKE   71 (96)
T ss_dssp             CCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESST
T ss_pred             CccEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCC
Confidence            45689999999999999999999999999999999999999999999966533

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=4.1e-05  Score=62.92  Aligned_cols=28  Identities=14%  Similarity=0.324  Sum_probs=24.7

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ..+++++|+||+||||||+++.|++..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3568999999999999999999998753

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=1.9e-05  Score=60.70  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=37.8

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHH
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV   55 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk   55 (366)
                      ..|++|..|.++|||+++| |++||.|++|||..+.+.  .+....+.
T Consensus        25 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~--~~l~~~l~   69 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISA--LETMDQVA   69 (99)
T ss_dssp             --CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCS--HHHHHHHH
T ss_pred             CCccEEEEecCCCCHHHcC-CCcceEEEEECCEecccH--HHHHHHHH
Confidence            3689999999999999999 999999999999999875  55555553

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=1.8e-05  Score=60.17  Aligned_cols=47  Identities=21%  Similarity=0.314  Sum_probs=40.3

Q ss_pred             CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959          8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL   57 (366)
Q Consensus         8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~   57 (366)
                      ..|++|..|.++|||+++| |+.||+|++|||..+.+.  ++....+...
T Consensus        26 ~~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~--~~l~~~l~~~   72 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTM   72 (94)
T ss_dssp             CCSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSS
T ss_pred             CCCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCH--HHHHHHHHhC
Confidence            3589999999999999999 999999999999999766  5666666543

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=97.31  E-value=9e-05  Score=55.41  Aligned_cols=52  Identities=15%  Similarity=0.268  Sum_probs=41.7

Q ss_pred             CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEE
Q psy16959          9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMT   63 (366)
Q Consensus         9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l   63 (366)
                      .|+.|..+.++|+|+++| |++||.|++|||.++.+.  ++...++...  ..++.+
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~~--~~~~~~~~~~~~~~~~~l   72 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSL   72 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEE
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeecH--HHHHHHHHhhccccccEE
Confidence            377899999999999999 999999999999999754  6666777553  344444

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=5.8e-05  Score=60.74  Aligned_cols=25  Identities=32%  Similarity=0.630  Sum_probs=23.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|.|+|+||+||||||+++.|++..
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999875

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.10  E-value=0.00016  Score=59.11  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=23.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .|+|+|+||+||||||+++.|++..+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999998754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.95  E-value=0.00019  Score=58.70  Aligned_cols=29  Identities=24%  Similarity=0.303  Sum_probs=24.0

Q ss_pred             CCCCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        100 RSNEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       100 ~~~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+..+.+|.|+|++||||||+++.|++..
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34455678899999999999999999763

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.88  E-value=0.00014  Score=59.61  Aligned_cols=28  Identities=14%  Similarity=0.242  Sum_probs=24.7

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      -..|.|+|+||+|||||||++.|++..+
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567899999999999999999998754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00031  Score=59.40  Aligned_cols=29  Identities=21%  Similarity=0.461  Sum_probs=24.7

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |...++|+|+||+||||||++..|++..+
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34556789999999999999999999764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.81  E-value=0.00028  Score=58.40  Aligned_cols=26  Identities=19%  Similarity=0.385  Sum_probs=23.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +.++|+|+|++||||||+++.|++..
T Consensus         1 M~~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           1 MTEPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999999875

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.70  E-value=0.00032  Score=57.09  Aligned_cols=24  Identities=33%  Similarity=0.642  Sum_probs=21.0

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      -|+|+||+||||||+++.|+++.+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            367999999999999999998753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.52  E-value=0.00052  Score=57.93  Aligned_cols=27  Identities=15%  Similarity=0.431  Sum_probs=24.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+++|+|+||+||||+|+++.|++..+
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457899999999999999999998753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0006  Score=57.24  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=22.3

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+|+|+||+||||+|+++.|++..+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998763

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.00093  Score=55.74  Aligned_cols=27  Identities=19%  Similarity=0.356  Sum_probs=23.3

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..|.+|+++|++||||||++++|++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            356789999999999999999997654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0018  Score=55.66  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+++|+|.|+.||||||++..|.+..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35788999999999999999998753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.00082  Score=54.43  Aligned_cols=23  Identities=13%  Similarity=0.251  Sum_probs=20.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +++.|+|++|||||||+++|++.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.32  E-value=0.00069  Score=55.50  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=22.0

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+|+|.||+||||||++..|++..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999999998763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.001  Score=56.44  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=22.0

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ++|+|.||+||||+|+++.|+++.+
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3677889999999999999999864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.21  E-value=0.0011  Score=58.03  Aligned_cols=28  Identities=25%  Similarity=0.527  Sum_probs=24.0

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ...|+.|+|.||+|+|||+|+..|++..
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456779999999999999999999864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.20  E-value=0.00096  Score=55.90  Aligned_cols=25  Identities=12%  Similarity=0.243  Sum_probs=22.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |-.|+|+||+||||||+++.|++..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3458899999999999999999875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.14  E-value=0.0012  Score=54.46  Aligned_cols=23  Identities=22%  Similarity=0.530  Sum_probs=21.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||||++..|++..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999998763

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.09  E-value=0.0012  Score=55.18  Aligned_cols=22  Identities=32%  Similarity=0.649  Sum_probs=19.7

Q ss_pred             EEEeCCCCCChHHHHHHHHhcc
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+|+||+||||+|+++.|+++.
T Consensus         6 iil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999875

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.09  E-value=0.00082  Score=55.32  Aligned_cols=24  Identities=17%  Similarity=0.338  Sum_probs=21.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++|+|.|++||||||+++.|++..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            678999999999999999999764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.00057  Score=56.83  Aligned_cols=26  Identities=19%  Similarity=0.194  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .+.+|+|+|++|||||||++.|++..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34577899999999999999999753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.04  E-value=0.0014  Score=54.44  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=21.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||||++..|+++.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            77899999999999999998864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.97  E-value=0.0016  Score=53.93  Aligned_cols=23  Identities=30%  Similarity=0.657  Sum_probs=20.8

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||||+++.|++..+
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            68889999999999999998763

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.00041  Score=47.45  Aligned_cols=39  Identities=36%  Similarity=0.766  Sum_probs=34.8

Q ss_pred             eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      =|+||+++|.+..++       +|+|+.||++.++++.+..||..+
T Consensus         2 ~~v~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~   40 (57)
T d1ckaa_           2 EYVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAE   40 (57)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEE
T ss_pred             CEEEECCCCCcCCcC-------CcCCCCCCEEEEEEEcCCCeEEEE
Confidence            389999999998877       899999999999999999998763

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.94  E-value=0.0015  Score=54.07  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=20.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+-+|.|.||+|||||||+++|.+.
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3334569999999999999999875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.92  E-value=0.0019  Score=54.53  Aligned_cols=23  Identities=17%  Similarity=0.518  Sum_probs=20.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||+|++..|+++.+
T Consensus         9 IiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           9 AAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHBC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            56779999999999999998753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.91  E-value=0.0018  Score=52.98  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      -|+|+|++||||||+++.|++..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.88  E-value=0.0017  Score=54.52  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=21.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |-+|+++|.+||||||++++|++..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999999753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0021  Score=52.15  Aligned_cols=23  Identities=35%  Similarity=0.696  Sum_probs=20.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |-|+|+||+|+|||+|+..+++.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            57899999999999999999864

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.00075  Score=49.22  Aligned_cols=44  Identities=18%  Similarity=0.457  Sum_probs=39.4

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      ++..|-+.+|+++|.+..++       +|+|++||++.++.+.+..||...
T Consensus         3 s~~~g~~~~al~~y~~~~~~-------eLs~~~Gd~i~Vl~~~~~~Ww~g~   46 (80)
T d1ue9a_           3 SGSSGEIAQVTSAYVASGSE-------QLSLAPGQLILILKKNTSGWWQGE   46 (80)
T ss_dssp             CSSCCEEEEECSCCCCCSTT-------BCCCCTTCEEEEEEECSSSEEEEE
T ss_pred             CCCCCCEEEECcCCCCCCCC-------EeeEcCCCEEEEEEEeCCCeEEEE
Confidence            56788999999999999887       899999999999999888998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.002  Score=53.22  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=20.6

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||||++..|+++.+
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67899999999999999998754

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.74  E-value=0.0023  Score=52.25  Aligned_cols=21  Identities=29%  Similarity=0.782  Sum_probs=19.4

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+||+|+|||||++.++..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHhc
Confidence            789999999999999999874

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.74  E-value=0.0027  Score=60.91  Aligned_cols=36  Identities=25%  Similarity=0.491  Sum_probs=27.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTS  139 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tT  139 (366)
                      |+=|+|+||||||||.|++.|++..+.--..+++|+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~   84 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK   84 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecce
Confidence            445999999999999999999986543344466663

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.74  E-value=0.0027  Score=53.96  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             CCc-EEEeCCCCCChHHHHHHHHhccC
Q psy16959        104 KRP-IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       104 ~r~-ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +++ |.|.||+||||+|+++.|+++.+
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344 45779999999999999999864

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.71  E-value=0.00068  Score=48.79  Aligned_cols=45  Identities=18%  Similarity=0.365  Sum_probs=40.3

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      ++..|.+++|+++|.+..++       +|+|..||++.++++.+.+||+.+.
T Consensus         3 s~s~g~~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~~Ww~v~~   47 (74)
T d1wfwa_           3 SGSSGSTMTVIKDYYALKEN-------EICVSQGEVVQVLAVNQQNMCLVYQ   47 (74)
T ss_dssp             SCCCSCEEECCSCBCCCSSS-------CCCBCTTCEEEEEEECTTSEEEEEE
T ss_pred             CCCCCCEEEEeEEECCCCCC-------CccCccCCEEEEEEEcCCCCEEEEe
Confidence            56788999999999998877       8999999999999999999998754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0025  Score=52.89  Aligned_cols=23  Identities=39%  Similarity=0.651  Sum_probs=20.4

Q ss_pred             EEEeCCCCCChHHHHHHHHhccC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      |+|+||+||||||++..|++..+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56789999999999999998753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.63  E-value=0.0033  Score=54.17  Aligned_cols=26  Identities=15%  Similarity=0.323  Sum_probs=22.2

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+++|+|+||+||||||.+.+|+..
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45688999999999999988888753

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.00067  Score=46.15  Aligned_cols=38  Identities=45%  Similarity=1.075  Sum_probs=33.7

Q ss_pred             eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      -|+||+++|.+..++       +|+|++||++.++.+.+..||..
T Consensus         2 tyv~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g   39 (56)
T d1gcqa_           2 TYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKG   39 (56)
T ss_dssp             EEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEE
T ss_pred             EEEEECcCCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEE
Confidence            489999999998777       89999999999999888888865

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.60  E-value=0.00069  Score=46.30  Aligned_cols=37  Identities=22%  Similarity=0.788  Sum_probs=33.3

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      |.||+++|.|..++       +|+|+.||++.+++..+.+||..
T Consensus         3 yarAlydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g   39 (57)
T d1utia_           3 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTG   39 (57)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEE
T ss_pred             EEEECcCCCCCCcC-------CcCCCCCCEEEEeEEcCCCEEEE
Confidence            89999999998877       89999999999999988888765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.59  E-value=0.0028  Score=51.82  Aligned_cols=24  Identities=29%  Similarity=0.576  Sum_probs=20.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      |+ |+|+|++||||||+++.|++..
T Consensus         2 p~-IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           2 PK-AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             CS-EEEECSTTSSHHHHHHHHHHHH
T ss_pred             Cc-EEEECCCCCCHHHHHHHHHHHh
Confidence            45 5667999999999999999875

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.58  E-value=0.0032  Score=54.26  Aligned_cols=28  Identities=18%  Similarity=0.309  Sum_probs=23.1

Q ss_pred             cCCCCCCcEEEeCCCCCChHHHHHHHHh
Q psy16959         99 PRSNEKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus        99 ~~~~~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      |....+++|+|+||+||||||.+.+|+.
T Consensus         5 p~~~~~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2           5 PVLKDRNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             CCCCSSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3445667899999999999998888874

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.51  E-value=0.0043  Score=56.42  Aligned_cols=25  Identities=32%  Similarity=0.723  Sum_probs=22.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++-|+|+||||+|||.|++.|++..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcc
Confidence            4678999999999999999999864

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.46  E-value=0.0012  Score=47.19  Aligned_cols=43  Identities=23%  Similarity=0.458  Sum_probs=33.7

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ  285 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  285 (366)
                      ++.+|.++||+++|.|..+..      +|+|++||++.++.+.+.++|.
T Consensus         3 s~~~~~~~~Alydy~~~~~~d------eLsf~~Gd~i~vl~~~~~~gW~   45 (72)
T d1spka_           3 SGSSGQKVKTIFPHTAGNNKT------LLSFAQGDVLTLLIPEEKDGWL   45 (72)
T ss_dssp             CSSCSCEEECSSCBCCSSCSS------BCCBCTTCEEEECCSSCBTTEE
T ss_pred             CCCCCCEEEEeeccCCCCCCC------EeeEcCCCEEEEEEeecCCCeE
Confidence            567788999999999865431      7999999999999876665443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.46  E-value=0.0053  Score=52.92  Aligned_cols=26  Identities=23%  Similarity=0.589  Sum_probs=22.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .++.++|+||+|+|||++++.++++.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34568999999999999999999864

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.00086  Score=45.64  Aligned_cols=39  Identities=28%  Similarity=0.796  Sum_probs=33.8

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |+|+ |+++|.+..++       +|+|+.||++.++.+....||...
T Consensus         1 ~l~v-Al~dy~a~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~   39 (57)
T d1efna_           1 ALFV-ALYDYEAITED-------DLSFHKGEKFQILNSSEGDWWEAR   39 (57)
T ss_dssp             CEEE-ESSCBCCSSTT-------BCCBCTTCEEEEEECSSCSEEEEE
T ss_pred             CEEE-ECCCCCCCCcC-------CcCCCCCCEEEEEEecCCCCEEEE
Confidence            5787 99999998877       899999999999999888888663

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0013  Score=47.50  Aligned_cols=44  Identities=27%  Similarity=0.581  Sum_probs=37.8

Q ss_pred             cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +|...+.+||+|+|.+..++       +|+|+.||++.++.+.+..||...
T Consensus         6 ~g~~~~~~rAlydy~a~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~   49 (76)
T d1ujya_           6 SGSHQLIVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEGT   49 (76)
T ss_dssp             CSCCCEEEECCSCBCCSSTT-------SCCBCSSCCEEESSCCSSSCEEEE
T ss_pred             CCCCCEEEEECccCCCCCCC-------CccCCCCCEEEEeEEcCCCEEEEE
Confidence            44556889999999998877       899999999999999888888774

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.28  E-value=0.0051  Score=53.60  Aligned_cols=24  Identities=13%  Similarity=0.263  Sum_probs=21.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..+|+|+||||||||...|..+
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCCHHHHHHhhcch
Confidence            567899999999999999999754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.26  E-value=0.0061  Score=52.74  Aligned_cols=27  Identities=26%  Similarity=0.491  Sum_probs=23.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ..+.++|+||+|+|||+++..|++..+
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            346799999999999999999998754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.26  E-value=0.0042  Score=53.70  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=21.8

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      +..|.+|+|+||+||||||-+.+|+.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44667889999999999998888874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.0032  Score=51.51  Aligned_cols=37  Identities=19%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      -|+|+|+++||||||..+|...........+.+|+.+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~   38 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDP   38 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecc
Confidence            3789999999999999999864322233344555544

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0043  Score=52.65  Aligned_cols=24  Identities=13%  Similarity=0.181  Sum_probs=20.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +|.|.||+|||||||+..|.+...
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            566999999999999999987643

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=95.06  E-value=0.0013  Score=45.02  Aligned_cols=39  Identities=38%  Similarity=1.004  Sum_probs=34.7

Q ss_pred             eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      -|++|+++|.+..++       +|+|..||++.++...+.+||..+
T Consensus         3 ~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~W~~g~   41 (58)
T d1sema_           3 KFVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQ   41 (58)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEE
T ss_pred             EEEEECCCCCcCCcC-------CcCCCCCCEEEEeEEcCCCEEEEE
Confidence            489999999998777       899999999999999988888763

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0028  Score=53.88  Aligned_cols=39  Identities=18%  Similarity=0.214  Sum_probs=28.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      .+.|+|-|+.||||||++..|.+.....+......|++|
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep   40 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREP   40 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence            578999999999999999999886443343333445666

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0013  Score=46.85  Aligned_cols=40  Identities=25%  Similarity=0.608  Sum_probs=35.6

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      -.++||+|+|.+..++       +|+|..||++.++++.+.+||..+
T Consensus         6 ~~~v~Aly~f~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~   45 (71)
T d2hspa_           6 KCAVKALFDYKAQRED-------ELTFIKSAIIQNVEKQEGGWWRGD   45 (71)
T ss_dssp             SSCEECCSCCCCSSSS-------SCCCCTTCEEBSCCCBTTTEECCB
T ss_pred             cEEEEEcccCCcCCcC-------CccCCCCCEEEEEEecCCCEEEEE
Confidence            3589999999998877       899999999999999999998774

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.96  E-value=0.0057  Score=49.77  Aligned_cols=23  Identities=13%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |++.|+|++|||||||+.+|+.+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            57889999999999999999865

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.95  E-value=0.0082  Score=55.96  Aligned_cols=24  Identities=33%  Similarity=0.546  Sum_probs=21.4

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      .-|+++||||||||.|+++|++..
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cceeeeCCCCccHHHHHHHHHhhc
Confidence            458999999999999999999864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.92  E-value=0.009  Score=51.30  Aligned_cols=25  Identities=24%  Similarity=0.622  Sum_probs=21.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +-++|+||+|+|||+++..|+++.+
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccC
Confidence            4589999999999999999998643

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.0015  Score=44.57  Aligned_cols=38  Identities=29%  Similarity=0.618  Sum_probs=34.0

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |.+|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         2 ~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~   39 (58)
T d1jo8a_           2 WATAEYDYDAAEDN-------ELTFVENDKIINIEFVDDDWWLGE   39 (58)
T ss_dssp             CEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred             EEEEccCCCCCCcC-------CcCCCCCCEEEEEEEcCCCEEEEE
Confidence            78999999998877       899999999999999988888764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.0086  Score=51.60  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .|.+|+|+||+||||||-+.+|+.
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999998888874

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.0095  Score=47.66  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||||..+|...
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999864

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.002  Score=44.65  Aligned_cols=41  Identities=32%  Similarity=0.616  Sum_probs=36.1

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .|-+++|+++|.|..++       +|+|..||++.+++..+.+||..+
T Consensus         4 ~g~~v~Aly~y~a~~~~-------eLsf~~Gd~i~vl~~~~~~Ww~g~   44 (62)
T d1k4us_           4 KGSQVEALFSYEATQPE-------DLEFQEGDIILVLSKVNEEWLEGE   44 (62)
T ss_dssp             CCEEEECCSCBCCCSSS-------BCCBCSSCEEEEEEESSSSCEEEE
T ss_pred             CCCEEEECCCCCCCCcC-------CcCCCCCCEEEEeEEcCCCEEEEE
Confidence            46689999999998887       899999999999999988888763

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=94.64  E-value=0.0072  Score=52.11  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=17.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .|.+|+|+||+||||||.+.+|+..
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567889999999999988888753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.49  E-value=0.008  Score=49.98  Aligned_cols=27  Identities=7%  Similarity=0.143  Sum_probs=23.0

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCC
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDR  130 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~  130 (366)
                      |-+|+|-|+.||||||+++.|.+..+.
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346889999999999999999987653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.42  E-value=0.0096  Score=50.95  Aligned_cols=23  Identities=22%  Similarity=0.586  Sum_probs=20.6

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..++|+||+|+|||+++..+++.
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.41  E-value=0.0092  Score=51.41  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++.++|.||+|+|||++++.|++.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            4467899999999999999999875

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.0024  Score=43.86  Aligned_cols=41  Identities=27%  Similarity=0.436  Sum_probs=35.3

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +|-.+||+++|.+..++       +|+|+.||++.++...+..||...
T Consensus         2 ~G~~~rAl~df~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~~~   42 (60)
T d1arka_           2 AGKIFRAMYDYMAADAD-------EVSFKDGDAIINVQAIDEGWMYGT   42 (60)
T ss_dssp             CCCCEECCSCCCCSSSS-------BCCCCTTCEECCSEECSSSEEEEE
T ss_pred             CCcEEEECccCCCCCCC-------CcCCCCCCEEEEEEEcCCCEEEEE
Confidence            35667999999998776       899999999999999988888653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.33  E-value=0.016  Score=47.45  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=25.3

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRP  141 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~  141 (366)
                      .|+|+|.++||||||..+|+..........+.||+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~   42 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK   42 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccc
Confidence            589999999999999999986532222233444544

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.13  E-value=0.013  Score=50.43  Aligned_cols=27  Identities=7%  Similarity=0.199  Sum_probs=22.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ..++++|+||+|+|||+|+.++++...
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            347889999999999999999987643

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.004  Score=44.59  Aligned_cols=43  Identities=28%  Similarity=0.553  Sum_probs=35.9

Q ss_pred             ccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       236 ~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      .++..++..||+++|.+..++       +|+|..||++.++.+. .+||..
T Consensus         5 s~~~~~~~~~alydy~a~~~~-------ELs~~~Gd~i~vl~~~-~~ww~g   47 (74)
T d1j3ta_           5 SSGVENLKAQALCSWTAKKDN-------HLNFSKHDIITVLEQQ-ENWWFG   47 (74)
T ss_dssp             CCCCCCCEEEESSCBCCCSTT-------BCCBCTTCEEEEEEEC-SSEEEE
T ss_pred             CCCCCCeEEEEccCCCCCCCC-------EecCCCCCEEEEEEcc-CCeEEE
Confidence            345678999999999999887       8999999999999875 467754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.018  Score=50.91  Aligned_cols=27  Identities=19%  Similarity=0.572  Sum_probs=23.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .++-++|+||+|+|||.+++.|++..+
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            356799999999999999999998654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.07  E-value=0.012  Score=46.46  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||||..+|..+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.99  E-value=0.012  Score=50.15  Aligned_cols=27  Identities=22%  Similarity=0.259  Sum_probs=23.3

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.+.+|.|+|.||||||||+..|.+.
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            456678999999999999999999864

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.0049  Score=45.82  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=29.7

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChh
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN  282 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~  282 (366)
                      |.. .+||+|+|.+..++       +|+|+.||++.++.+...+
T Consensus         4 ~~~-~~rAlydy~~~~~~-------ELs~~~Gd~v~Vl~~~~~~   39 (93)
T d1uffa_           4 GSS-GYRALYPFEARNHD-------EMSFNSGDIIQVDEKTVGE   39 (93)
T ss_dssp             SCC-CEEESSCBCCCSSS-------CCCBCTTCEEEECSSCCCS
T ss_pred             CCe-EEEECccCCCCCCC-------CccCcCCCEEEEEEeccCC
Confidence            444 44999999999887       8999999999999886543

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=93.89  E-value=0.0036  Score=41.84  Aligned_cols=37  Identities=22%  Similarity=0.609  Sum_probs=32.7

Q ss_pred             eeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       244 irAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +.|+++|.+..++       +|+|+.||++.++++.+++||+.+
T Consensus         1 V~Alydy~a~~~~-------eLs~~~Gd~~~vl~~~~~~Ww~~~   37 (53)
T d2rn8a1           1 VIALYDYQTNDPQ-------ELALRCDEEYYLLDSSEIHWWRVQ   37 (53)
T ss_dssp             EEESSCCCCSSTT-------BCCCCTTCEEEECCCSCSSCEEEE
T ss_pred             CEEeeeECCCCCC-------eeeECCCCEEEEeEEcCCCeEEEE
Confidence            5789999998777       899999999999999999999763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.88  E-value=0.015  Score=47.45  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=24.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRP  141 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~  141 (366)
                      |+|+|+++||||||...|...... ....+.||+.
T Consensus         3 I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~   36 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRK   36 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeec
Confidence            789999999999999999864211 2223445654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.017  Score=52.57  Aligned_cols=27  Identities=19%  Similarity=0.465  Sum_probs=22.3

Q ss_pred             CCCC-cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        102 NEKR-PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       102 ~~~r-~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ..|. .++|+||||||||.|++.|++..
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhc
Confidence            3444 57899999999999999999853

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.77  E-value=0.014  Score=49.72  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=19.9

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++|.||+|+|||++++.++++
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.75  E-value=0.0049  Score=53.94  Aligned_cols=24  Identities=17%  Similarity=0.451  Sum_probs=20.7

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..+|+|+||||||||.+.|..+
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             cceEEEECCCCccHHHHHHhhccH
Confidence            467789999999999999999854

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.75  E-value=0.016  Score=45.52  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||+|+.+|...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.72  E-value=0.017  Score=49.08  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=22.9

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....++.|+||+|+|||||++.|+..
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcc
Confidence            35678999999999999999999864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.68  E-value=0.019  Score=50.29  Aligned_cols=25  Identities=32%  Similarity=0.713  Sum_probs=21.8

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +-|+|+||+|+|||++++.|++..+
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECcCCCCHHHHHHHHhhccc
Confidence            4589999999999999999998643

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.66  E-value=0.025  Score=49.59  Aligned_cols=27  Identities=22%  Similarity=0.650  Sum_probs=23.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .++-++|.||+|+|||++++.|++..+
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHcC
Confidence            346699999999999999999998643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.65  E-value=0.019  Score=46.97  Aligned_cols=36  Identities=25%  Similarity=0.600  Sum_probs=21.8

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      |+|+|.++||||||+.+|...-.......+.||+..
T Consensus        11 V~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~   46 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP   46 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSTTEEECCCC------
T ss_pred             EEEECCCCCCHHHHHHHHHCCCcceeeccccccccc
Confidence            789999999999999999864322222234455444

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.58  E-value=0.01  Score=53.55  Aligned_cols=52  Identities=15%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHH
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL  165 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~  165 (366)
                      .+|.|+|+|||||||+++.|.+........+.         -+.+-+||..++.++.....
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~---------iI~~Dsfyr~~R~~~~~~~~   56 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAV---------SIEGDAFHRFNRADMKAELD   56 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEE---------EEEGGGGBSCCHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeE---------EEeCCCCCccchhhhhhhhh
Confidence            36779999999999999998764321111100         12344566667766655443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.019  Score=50.01  Aligned_cols=25  Identities=24%  Similarity=0.504  Sum_probs=21.9

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ....++.|+||+|||||||++.++-
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhc
Confidence            3567899999999999999999875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.47  E-value=0.019  Score=46.51  Aligned_cols=22  Identities=32%  Similarity=0.720  Sum_probs=19.9

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .|+|+|.++||||||+.+|...
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.40  E-value=0.018  Score=49.06  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.7

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -++|.||+|+|||+++..|++.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            3789999999999999999865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.37  E-value=0.018  Score=50.46  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.4

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -+++|+||+|+|||||++.|+..
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCChHHHHHHHHHcC
Confidence            37789999999999999999863

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.34  E-value=0.018  Score=48.93  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.5

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +|+|+||.|||||||..+|.+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            4789999999999999999753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.33  E-value=0.024  Score=49.87  Aligned_cols=27  Identities=26%  Similarity=0.597  Sum_probs=23.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .+|-++|.||+|+|||.++..++....
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhC
Confidence            356799999999999999999998754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.014  Score=49.84  Aligned_cols=31  Identities=13%  Similarity=0.206  Sum_probs=25.8

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCccee
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAA  134 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~  134 (366)
                      .|.|+|-|+.||||||+++.|++........
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~~~~~   32 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV   32 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhcCCCe
Confidence            4789999999999999999999876544443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.24  E-value=0.017  Score=50.90  Aligned_cols=37  Identities=8%  Similarity=0.193  Sum_probs=25.5

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      -|+|+|.+|+|||||...|..+........+.+|+..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~   70 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP   70 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeE
Confidence            4889999999999999999865321122334555544

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.0059  Score=45.97  Aligned_cols=41  Identities=39%  Similarity=0.884  Sum_probs=36.0

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      ..+++||++|.+..++       +|+|+.||++.++.+.+.+||..+.
T Consensus        34 ~~~~~Alydy~a~~~~-------ELsf~~Gd~i~Vl~~~~~gWw~g~~   74 (98)
T d1udla_          34 VCQVIAMYDYAANNED-------ELSFSKGQLINVMNKDDPDWWQGEI   74 (98)
T ss_dssp             SEEEEESSCCCCSSTT-------SCCCCTTCEEEECBCCSSSEEBCBS
T ss_pred             ccEEEEccCCCCCCCC-------EeeEcCCCEEEEeEecCCCeEEEEE
Confidence            4578999999999887       8999999999999998889987743

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.18  E-value=0.022  Score=49.55  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...-.+.|+||+|||||||++.|+-
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCcchhhHhccC
Confidence            3567899999999999999998775

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.17  E-value=0.0069  Score=48.48  Aligned_cols=36  Identities=33%  Similarity=0.738  Sum_probs=25.6

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      |+|+|.++||||||..+|...........+.+|+.+
T Consensus         3 I~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~   38 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDV   38 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCceeeeccccccccc
Confidence            689999999999999999864322333344555554

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.02  Score=49.06  Aligned_cols=29  Identities=14%  Similarity=0.283  Sum_probs=24.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhccCCcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDSDRFA  132 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~  132 (366)
                      |+.|+|-|+-||||||+++.|++......
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~   30 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcC
Confidence            68899999999999999999998755433

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.02  E-value=0.021  Score=48.41  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=20.0

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -++|.||+|+|||+++..++++
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3789999999999999999975

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.026  Score=46.11  Aligned_cols=25  Identities=12%  Similarity=0.175  Sum_probs=21.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+++.|.||+|+|||+|+.+++.+
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            3578999999999999999998753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=92.94  E-value=0.022  Score=49.86  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|||||||++.|...
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999863

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.91  E-value=0.0056  Score=42.88  Aligned_cols=39  Identities=21%  Similarity=0.665  Sum_probs=34.3

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      +++|+++|.|..+.       +|+|+.||++.++.+.+..||..+.
T Consensus         4 ~v~Alydf~a~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~   42 (67)
T d1gl5a_           4 IVVAMYDFQATEAH-------DLRLERGQEYIILEKNDLHWWRARD   42 (67)
T ss_dssp             CEEECSCBCCSSSS-------BCCBCTTCEEEEEECSSSSEEEEEC
T ss_pred             EEEECCCCCCCCcC-------CcCCCCCCEEEEEEecCCCcEEEEE
Confidence            46799999999877       8999999999999998888998743

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.025  Score=49.77  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|||||||++.|...
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcc
Confidence            4568999999999999999999864

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.89  E-value=0.0058  Score=41.57  Aligned_cols=38  Identities=32%  Similarity=0.844  Sum_probs=33.0

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .+||+++|.|..++       +|+|+.||++.+++..+..||..+
T Consensus         4 r~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~W~~g~   41 (58)
T d1uj0a_           4 RVRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGE   41 (58)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred             EEEECCCCCCCCcC-------CcCCCCCCEEEEeEEeCCCEEEEE
Confidence            47899999998776       899999999999999888888653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=92.86  E-value=0.027  Score=44.55  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=19.5

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.++||||||..++...
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999865

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.84  E-value=0.018  Score=49.70  Aligned_cols=21  Identities=24%  Similarity=0.287  Sum_probs=18.5

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ++|+||+|+|||+++..+++.
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            567899999999999999865

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.80  E-value=0.029  Score=49.01  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...++.|+||+|+|||||.+.|.-
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHc
Confidence            456899999999999999999985

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.79  E-value=0.02  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -++|+||+|+|||+++..++++
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4889999999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.025  Score=49.46  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=22.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|||||||++.|...
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4578999999999999999999864

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.74  E-value=0.023  Score=49.80  Aligned_cols=51  Identities=18%  Similarity=0.244  Sum_probs=34.4

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHHHHHHHH
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRAQFELDI  164 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~ef~~~~  164 (366)
                      ....++.|+||||||||||++.|.--.            +|..|+  .+|.+....+..++....
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~------------~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTEGSVLVDGQELTTLSESELTKAR   81 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc------------cccCCceEEcCeEeeeCChhhhhhhh
Confidence            356789999999999999999987531            122232  356666556666655543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.74  E-value=0.027  Score=47.75  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=21.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +.-++|+||+|||||+|+..|+++
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHH
Confidence            446899999999999999999875

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=92.73  E-value=0.026  Score=46.75  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||||...|...
T Consensus        26 I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          26 IALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHhcCC
Confidence            889999999999999999853

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.0071  Score=41.05  Aligned_cols=38  Identities=24%  Similarity=0.598  Sum_probs=33.3

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      +++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         4 ~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~~Ww~~~   41 (58)
T d1ng2a1           4 TYRAIADYEKTSGS-------EMALSTGDVVEVVEKSESGWWFCQ   41 (58)
T ss_dssp             EEECSSCBCCSSTT-------CCCBCTTCEEEEEECCTTSCCEEE
T ss_pred             EEEECccCcCCCCC-------CcCCCCCCEEEEEEecCCCeEEEE
Confidence            46899999998777       899999999999999988888764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.64  E-value=0.021  Score=45.99  Aligned_cols=21  Identities=33%  Similarity=0.600  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||||..+|...
T Consensus        16 I~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          16 LVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.64  E-value=0.028  Score=47.97  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=21.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -.|++|.||+|+|||.|++.++++
T Consensus        36 ~n~l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          36 YNPIFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHH
Confidence            367999999999999999999865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.63  E-value=0.03  Score=45.00  Aligned_cols=21  Identities=24%  Similarity=0.559  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.+|...
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.60  E-value=0.034  Score=46.05  Aligned_cols=22  Identities=36%  Similarity=0.641  Sum_probs=20.1

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .|+|+|+++||||||..+|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.56  E-value=0.031  Score=48.89  Aligned_cols=24  Identities=17%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..-++.|+||+|+|||||++.|+-
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            456899999999999999999875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.02  Score=46.40  Aligned_cols=27  Identities=15%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             CCCCCc-EEEeCCCCCChHHHHHHHHhc
Q psy16959        101 SNEKRP-IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       101 ~~~~r~-ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |....+ |+|+|.++||||||+.+|...
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            343333 899999999999999999753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.51  E-value=0.04  Score=48.54  Aligned_cols=27  Identities=19%  Similarity=0.559  Sum_probs=23.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      .++-|+|.||+|+|||+++..++...+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            346699999999999999999998754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.033  Score=44.82  Aligned_cols=21  Identities=19%  Similarity=0.580  Sum_probs=19.4

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.+++.+
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.44  E-value=0.027  Score=49.63  Aligned_cols=25  Identities=12%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|||||||++.|+..
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcc
Confidence            4568999999999999999999853

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.44  E-value=0.021  Score=46.82  Aligned_cols=53  Identities=19%  Similarity=0.244  Sum_probs=32.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC---CCCcceeecCHHHH
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE---VDGQDYHFITRAQF  160 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E---~~g~~y~~vs~~ef  160 (366)
                      |.|+|+++||||||+.+|...-. .....+.+|+.+..+.   .++..+.+++..-+
T Consensus         4 VaiiG~~nvGKSSLin~L~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~   59 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGL   59 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC-ceecCCCceEeeeeceeEecCCcEEEEecCCCc
Confidence            78999999999999999975421 2222334555443321   23444556665544

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.39  E-value=0.014  Score=41.43  Aligned_cols=41  Identities=17%  Similarity=0.277  Sum_probs=33.4

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      .....+|||++|.+..++       +|+|+.||++.+++....+||..
T Consensus         8 ~p~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~   48 (72)
T d1ugva_           8 TPFRKAKALYACKAEHDS-------ELSFTAGTVFDNVHPSQEPGWLE   48 (72)
T ss_dssp             CSCCCEEESSCBCCCSSS-------BCCBCTTCEEBSCCBCSSTTEEE
T ss_pred             CCCEEEEEcccCCCCCCC-------EecCCCCCEEEEeeccCCCCEEE
Confidence            334578999999999877       89999999999999877665543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=92.38  E-value=0.031  Score=44.72  Aligned_cols=21  Identities=14%  Similarity=0.512  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|..+|...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999999764

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.36  E-value=0.0075  Score=40.53  Aligned_cols=34  Identities=21%  Similarity=0.494  Sum_probs=29.5

Q ss_pred             eeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHH
Q psy16959        245 IAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ  285 (366)
Q Consensus       245 rAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  285 (366)
                      ||+++|.+..++       +|+|+.||++.++...+.+||.
T Consensus         3 ralydf~a~~~~-------ELs~~~Gd~i~v~~~~~~~~w~   36 (56)
T d1zuua1           3 KVLYAYVQKDDD-------EITITPGDKISLVARDTGSGWT   36 (56)
T ss_dssp             EECSCBCCCSTT-------BCCBCTTCCEEEEECCSSSSEE
T ss_pred             EEeeeeCCCCCC-------EeeECCCCEEEEEEEecCCCcE
Confidence            799999999877       8999999999999887777654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.35  E-value=0.034  Score=44.95  Aligned_cols=21  Identities=29%  Similarity=0.643  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|++|||||+|..+|...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999999864

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.34  E-value=0.0084  Score=40.24  Aligned_cols=38  Identities=29%  Similarity=0.759  Sum_probs=33.3

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .+.|+++|.+..++       +|+|+.||++.++.+.+.+||..+
T Consensus         2 ~~vAl~dy~~~~~~-------eLs~~~Gd~v~v~~~~~~~Ww~g~   39 (55)
T d1u06a1           2 LVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVE   39 (55)
T ss_dssp             EEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred             EEEECCCCCCCCcC-------CccCCCCCEEEEeEEcCCCEEEEE
Confidence            36799999998877       899999999999999988998764

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.21  E-value=0.0097  Score=40.51  Aligned_cols=37  Identities=19%  Similarity=0.594  Sum_probs=31.6

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |.+|+++|.+..++       +|+|..||++.+++..+ +||...
T Consensus         3 ~a~alydf~a~~~~-------ELs~~~Gd~i~v~~~~~-~ww~~~   39 (59)
T d1i07a_           3 YAKSKYDFVARNSS-------ELSVMKDDVLEILDDRR-QWWKVR   39 (59)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEECGGGC-CEEEEE
T ss_pred             EEEEccCCCCCCCC-------eeeEcCCCEEEEEEEcC-CcEEEE
Confidence            78999999999887       89999999999998754 687653

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.01  Score=41.18  Aligned_cols=40  Identities=38%  Similarity=0.779  Sum_probs=32.7

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      |.-.++.|+++|.+..++       +|+|+.||++.+++.. .+||..
T Consensus         2 g~~~~vvAlydy~~~~~~-------eLs~~~Gd~i~v~~~~-~~ww~~   41 (65)
T d1qcfa1           2 GIRIIVVALYDYEAIHHE-------DLSFQKGDQMVVLEES-GEWWKA   41 (65)
T ss_dssp             CCCCEEEESSCBCCCSTT-------BCCBCTTCEEEEEECC-TTEEEE
T ss_pred             CCcEEEEECCcCCCCCcC-------ccCCCCCCEEEEEEEC-CCCEEE
Confidence            556788999999998777       8999999999988764 456655

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.18  E-value=0.032  Score=46.03  Aligned_cols=23  Identities=17%  Similarity=0.071  Sum_probs=19.2

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      =+|.|+|++||||||++..|.+.
T Consensus         4 ~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            35669999999999999998653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.10  E-value=0.037  Score=46.20  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |-|+|+|+++||||+|..+|...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.10  E-value=0.039  Score=44.60  Aligned_cols=21  Identities=19%  Similarity=0.567  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|..+++..
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.03  E-value=0.04  Score=44.24  Aligned_cols=21  Identities=14%  Similarity=0.332  Sum_probs=18.8

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||+|..+|...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678899999999999999864

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.0093  Score=41.69  Aligned_cols=39  Identities=28%  Similarity=0.703  Sum_probs=34.5

Q ss_pred             eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      -+++|+++|.+..++       +|+|+.||++.++.+.+..||..+
T Consensus         9 ~~v~Alydy~a~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~   47 (67)
T d1awwa_           9 KKVVALYDYMPMNAN-------DLQLRKGDEYFILEESNLPWWRAR   47 (67)
T ss_dssp             CEEEBSSCCCCSSSS-------SCCCCSSCEEECCCCCSSSEECCB
T ss_pred             EEEEECcCCCCCCcC-------CcCCCCCCEEEEEEEcCCCeEEEE
Confidence            467899999999887       899999999999999888898774

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.96  E-value=0.035  Score=49.64  Aligned_cols=25  Identities=12%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|+|||||++.|+..
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            5678999999999999999999864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.041  Score=44.22  Aligned_cols=21  Identities=24%  Similarity=0.513  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++..+
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999999864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.92  E-value=0.043  Score=49.78  Aligned_cols=27  Identities=26%  Similarity=0.593  Sum_probs=21.9

Q ss_pred             CCCCC-cEEEeCCCCCChHHHHHHHHhc
Q psy16959        101 SNEKR-PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       101 ~~~~r-~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +..|. .++++||+|+|||.+++.|++.
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHH
Confidence            33444 4678899999999999999975

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.04  Score=45.14  Aligned_cols=21  Identities=14%  Similarity=0.509  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.+|...
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            689999999999999999864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.83  E-value=0.043  Score=44.30  Aligned_cols=21  Identities=24%  Similarity=0.733  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||+|..++...
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999999854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.81  E-value=0.029  Score=48.69  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..-++.|+||+|+|||||.+.|+--
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4568999999999999999999863

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=91.75  E-value=0.041  Score=48.02  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|.-.
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4578999999999999999999853

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.043  Score=44.47  Aligned_cols=21  Identities=19%  Similarity=0.494  Sum_probs=18.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998854

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.045  Score=46.13  Aligned_cols=25  Identities=12%  Similarity=0.181  Sum_probs=20.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+.+|.|+|+.||||||++..|.+.
T Consensus         2 mk~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHC
Confidence            3347789999999999999988654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.046  Score=44.01  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|..++...
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999999864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.047  Score=43.63  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|..++...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999999864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.04  Score=49.92  Aligned_cols=25  Identities=16%  Similarity=0.147  Sum_probs=20.5

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .|-+|-|.|++||||||++..|...
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHH
Confidence            3345669999999999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.62  E-value=0.033  Score=45.41  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |.|+|.++||||||+.+|...
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999854

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.058  Score=43.74  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999854

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.58  E-value=0.046  Score=48.21  Aligned_cols=25  Identities=16%  Similarity=0.238  Sum_probs=22.1

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...-++.|+||+|||||||++.|+-
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHc
Confidence            3567899999999999999999975

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.55  E-value=0.049  Score=45.28  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+-|+|+|++|+|||+++..|.++
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3467899999999999999999876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.54  E-value=0.04  Score=44.31  Aligned_cols=21  Identities=24%  Similarity=0.680  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.+|...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.51  E-value=0.049  Score=43.77  Aligned_cols=21  Identities=29%  Similarity=0.694  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.+|...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.051  Score=43.69  Aligned_cols=21  Identities=33%  Similarity=0.608  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++..+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999999864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.048  Score=44.59  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=19.4

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.+++..
T Consensus         8 ivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.46  E-value=0.048  Score=48.39  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=21.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+.-++|+||+|||||+|+..|+++
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHH
Confidence            3456899999999999999999864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.041  Score=44.19  Aligned_cols=21  Identities=24%  Similarity=0.577  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.+|...
T Consensus         7 v~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.39  E-value=0.06  Score=48.99  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ++-|+++||+||||||++..|+..
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCCEEEEeeccccchHHHHHHhhh
Confidence            456899999999999999999976

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.043  Score=44.33  Aligned_cols=21  Identities=38%  Similarity=0.672  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|..+|...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.30  E-value=0.021  Score=42.80  Aligned_cols=48  Identities=21%  Similarity=0.285  Sum_probs=34.9

Q ss_pred             CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959        238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA  286 (366)
Q Consensus       238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  286 (366)
                      .+..-+++|+|||.|... ...+.+-+|+|+.||++.++.+.+.+||..
T Consensus        14 ~~~~~~~~Alydy~~~~~-~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~   61 (96)
T d1wiea_          14 SGKVHLCVARYSYNPFDG-PNENPEAELPLTAGKYLYVYGDMDEDGFYE   61 (96)
T ss_dssp             TSCEEEEEESSCCCGGGS-SCSCTTTBCCCCTTCEEEEESSCCSSSCCE
T ss_pred             CCCceEEEEeeeecCccc-CCCCCCcEeeEcCCCEEEEEEeeCCCceEE
Confidence            356668889999987431 122333489999999999999888776654

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.013  Score=39.02  Aligned_cols=36  Identities=22%  Similarity=0.424  Sum_probs=31.9

Q ss_pred             eeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        245 IAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       245 rAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      .|+++|.+..++       +|+|..||++.++++.+..||..+
T Consensus         4 val~~y~a~~~~-------eLs~~~Gd~v~vl~~~~~gWw~g~   39 (53)
T d1wlpb1           4 VAIKAYTAVEGD-------EVSLLEGEAVEVIHKLLDGWWVIR   39 (53)
T ss_dssp             EECSCBCCCSSS-------BCCBCTTCEEEEEECCTTSSEEEE
T ss_pred             EEeeeECCCCCC-------EecCCCCCEEEEEeecCCceEEEE
Confidence            489999999888       899999999999999888888663

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.055  Score=43.65  Aligned_cols=21  Identities=24%  Similarity=0.574  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            689999999999999999864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.054  Score=43.81  Aligned_cols=21  Identities=24%  Similarity=0.659  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||+|+.++...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.20  E-value=0.048  Score=47.20  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=21.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..-++.|+||+|+|||||.+.|+-
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            456899999999999999998875

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.014  Score=41.13  Aligned_cols=40  Identities=28%  Similarity=0.726  Sum_probs=32.2

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCCh-hhHHH
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-NWWQA  286 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~  286 (366)
                      .|-+.+|+++|.+..++       +|+|+.||++.++.+... .||..
T Consensus         5 ~g~~~~Alydy~a~~~~-------ELs~~~Gd~i~vl~~~~~~~W~~~   45 (71)
T d1k9aa1           5 SGTECIAKYNFHGTAEQ-------DLPFCKGDVLTIVAVTKDPNWYKA   45 (71)
T ss_dssp             TTCEEEESSCBCCSSSS-------BCCBCTTCEEEEEEECSSTTEEEE
T ss_pred             CCCEEEEccCCCCCCCC-------CccCCCCCEEEEeEeccCCCEEEE
Confidence            45678899999998877       899999999999988655 45544

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.18  E-value=0.045  Score=45.60  Aligned_cols=24  Identities=25%  Similarity=0.428  Sum_probs=21.5

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+-|+|.||+|+|||+++..|.++
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            456899999999999999999876

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.055  Score=43.59  Aligned_cols=21  Identities=29%  Similarity=0.661  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|.+|||||+|+.+|...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999999854

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.13  E-value=0.07  Score=41.37  Aligned_cols=26  Identities=12%  Similarity=0.073  Sum_probs=20.7

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +..+..+|.+|||+|||.++..+..+
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~~   31 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYAA   31 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHHT
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            34567899999999999988766544

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.048  Score=44.02  Aligned_cols=21  Identities=19%  Similarity=0.591  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|..+++..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            889999999999999999864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.047  Score=44.34  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999999865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.058  Score=43.30  Aligned_cols=21  Identities=19%  Similarity=0.604  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.00  E-value=0.049  Score=43.78  Aligned_cols=21  Identities=14%  Similarity=0.458  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||||..+|...
T Consensus        18 I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.047  Score=44.32  Aligned_cols=21  Identities=19%  Similarity=0.591  Sum_probs=19.4

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++...
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.97  E-value=0.031  Score=48.96  Aligned_cols=25  Identities=12%  Similarity=0.365  Sum_probs=22.2

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ...-.+.|+||+|||||||++.|.-
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHc
Confidence            3567899999999999999999986

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.014  Score=40.32  Aligned_cols=37  Identities=30%  Similarity=0.843  Sum_probs=32.3

Q ss_pred             eeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        245 IAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       245 rAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      .|+++|.+..++       +|+|+.||++.++++...+||..+.
T Consensus         6 vAlydf~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~   42 (64)
T d1fmka1           6 VALYDYESRTET-------DLSFKKGERLQIVNNTEGDWWLAHS   42 (64)
T ss_dssp             EESSCBCCCSSS-------BCCBCTTCEEEESCCCSSSEEEEEE
T ss_pred             EECccCCCcCcC-------CcCCCCCCEEEEEEEcCCCcEEEEE
Confidence            599999998877       8999999999999998888987643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=90.93  E-value=0.065  Score=49.53  Aligned_cols=28  Identities=29%  Similarity=0.419  Sum_probs=24.1

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      ..++.++|.||+|+|||+++..|++..+
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3557899999999999999999998644

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.89  E-value=0.047  Score=45.92  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=21.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..++++|.||+|+|||+|+.+++.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.06  Score=43.66  Aligned_cols=21  Identities=33%  Similarity=0.714  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.++...
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.85  E-value=0.056  Score=47.45  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..-++.|+||+|+|||||++.|.-.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCC
Confidence            4568999999999999999999853

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.80  E-value=0.036  Score=48.91  Aligned_cols=25  Identities=12%  Similarity=0.199  Sum_probs=21.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....+.|+||+|||||||++.|...
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhc
Confidence            4568999999999999999887753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=90.75  E-value=0.064  Score=43.29  Aligned_cols=21  Identities=24%  Similarity=0.669  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.++||||+|+.++...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.72  E-value=0.059  Score=44.71  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +|+|.|+-||||||+++.|.+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.054  Score=43.25  Aligned_cols=21  Identities=33%  Similarity=0.710  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++...
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=90.66  E-value=0.065  Score=46.61  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=22.0

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...++.|+||+|+|||||++.|+..
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568899999999999999999864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.055  Score=43.74  Aligned_cols=21  Identities=24%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999853

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=90.61  E-value=0.063  Score=45.04  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=19.3

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -+|.|+|+.||||||+++.|.+.
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            35679999999999999988653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.60  E-value=0.056  Score=43.32  Aligned_cols=21  Identities=43%  Similarity=0.740  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|.++||||+|..+|+..
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999999864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.58  E-value=0.067  Score=42.98  Aligned_cols=21  Identities=24%  Similarity=0.657  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|..++...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.068  Score=43.02  Aligned_cols=21  Identities=24%  Similarity=0.572  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||+|+.++...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.52  E-value=0.015  Score=40.66  Aligned_cols=39  Identities=28%  Similarity=0.801  Sum_probs=30.7

Q ss_pred             eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCC-----hhhHHH
Q psy16959        242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD-----PNWWQA  286 (366)
Q Consensus       242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~  286 (366)
                      -|.||+++|.|..++      .+|+|++||++.++++.+     .+||..
T Consensus         6 ~~~~Alydy~~~~~~------~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g   49 (67)
T d2v1ra1           6 EFARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKV   49 (67)
T ss_dssp             EEEEESSCBCCSSTT------TBCCBCTTCEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEECccCCCCCCC------CEeCCCCCCEEEEEEeecCCCcCCCeEEE
Confidence            389999999987543      179999999999998754     467765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.059  Score=44.43  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.+++..
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.37  E-value=0.059  Score=44.08  Aligned_cols=21  Identities=29%  Similarity=0.563  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.++...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999999864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.36  E-value=0.063  Score=45.53  Aligned_cols=27  Identities=15%  Similarity=0.207  Sum_probs=23.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +++.|+|-|+-||||||++..|.+...
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            467899999999999999999998653

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.33  E-value=0.017  Score=39.85  Aligned_cols=37  Identities=32%  Similarity=0.870  Sum_probs=30.0

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCCh---hhHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP---NWWQA  286 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~  286 (366)
                      -++|+++|.+..++       +|+|+.||++.++++.+.   .||..
T Consensus         6 ~v~Alydy~a~~~~-------ELs~~~Gd~i~vl~~~~~~~~gW~~g   45 (63)
T d1ycsb2           6 VIYALWDYEPQNDD-------ELPMKEGDCMTIIHREDEDEIEWWWA   45 (63)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCSSCEEEECCCCTTSCSSEEEE
T ss_pred             EEEEeeCCCCCCCC-------CcCCCCCCEEEEEEecCCCCCCEEEE
Confidence            36799999998877       899999999999877543   47755

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=90.21  E-value=0.063  Score=44.30  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..+-|+|.|++|+|||+++..|+++
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3467899999999999999999876

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.12  E-value=0.077  Score=43.28  Aligned_cols=21  Identities=14%  Similarity=0.608  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.++||||+|+.+|...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999999863

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.02  E-value=0.081  Score=42.65  Aligned_cols=21  Identities=19%  Similarity=0.591  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|+.+++..
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999864

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.00  E-value=0.069  Score=45.53  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=21.4

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      ++|.|+|+.||||||++..|.+..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.068  Score=43.85  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|..+++..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999999864

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.023  Score=43.89  Aligned_cols=41  Identities=22%  Similarity=0.414  Sum_probs=34.8

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR  288 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  288 (366)
                      |-.+.|+++|.+..++       +|+|+.||++.+++..+.+||....
T Consensus        14 g~~~~alydy~a~~~d-------ELs~~~Gd~i~Vl~~~~~gWw~g~~   54 (118)
T d1ng2a2          14 GEPYVAIKAYTAVEGD-------EVSLLEGEAVEVIHKLLDGWWVIRK   54 (118)
T ss_dssp             CEEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEEE
T ss_pred             CcEEEECcCCCCCCCC-------EecCCCCCEEEEeEecCCCeEEEEE
Confidence            3345699999998887       8999999999999999999997743

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.83  E-value=0.059  Score=45.76  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ..++++|.||+|+|||+++.+++.+
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999998753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.81  E-value=0.077  Score=43.43  Aligned_cols=19  Identities=21%  Similarity=0.525  Sum_probs=17.6

Q ss_pred             EEEeCCCCCChHHHHHHHH
Q psy16959        107 IVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~  125 (366)
                      |+|+|.+|||||+|..++.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6899999999999999993

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=89.78  E-value=0.066  Score=43.13  Aligned_cols=21  Identities=33%  Similarity=0.621  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||+|..+|...
T Consensus        19 I~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999999754

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.022  Score=40.12  Aligned_cols=39  Identities=23%  Similarity=0.690  Sum_probs=31.7

Q ss_pred             eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCC--hhhHHHH
Q psy16959        242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD--PNWWQAY  287 (366)
Q Consensus       242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~  287 (366)
                      -++||+++|.+..++       +|+|+.||++.++...+  ++||..+
T Consensus         7 ~~~~Alydf~~~~~~-------eLs~~~Gd~i~vl~~~~~~~~Ww~~~   47 (71)
T d1u5sa1           7 HVVQTLYPFSSVTEE-------ELNFEKGETMEVIEKPENDPEWWKCK   47 (71)
T ss_dssp             SEEEESSCCCCCSSS-------BCCCCSSCCEEEEECCCTTTCEEEEE
T ss_pred             EEEEECccCCCCCCC-------EeeECCCCEEEEEEcccCCCCeEEEE
Confidence            368999999998877       89999999999998643  4677663

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.63  E-value=0.072  Score=45.17  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=22.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...+++|.||+|+|||+++.+++.+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.55  E-value=0.075  Score=43.93  Aligned_cols=21  Identities=33%  Similarity=0.654  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+.|||||+|+.+|...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.045  Score=44.35  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=17.8

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||+|+.++...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999998754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.094  Score=42.47  Aligned_cols=21  Identities=33%  Similarity=0.724  Sum_probs=19.2

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|..|||||+|..+|...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999853

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=89.40  E-value=0.05  Score=44.01  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=19.1

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|+++||||+|..+|...
T Consensus        15 IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999854

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=89.34  E-value=0.16  Score=47.26  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=20.1

Q ss_pred             CcEEEeCCCCCChHHHHHHHHhc
Q psy16959        105 RPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       105 r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      -+|+|+|||||||||.+..+.+.
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhh
Confidence            47999999999999988888764

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.10  E-value=0.027  Score=37.89  Aligned_cols=35  Identities=26%  Similarity=0.508  Sum_probs=28.8

Q ss_pred             eeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHH
Q psy16959        244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ  285 (366)
Q Consensus       244 irAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  285 (366)
                      +.|+++|.+..++       +|+|+.||++.++.+....||.
T Consensus         3 ~vAlydy~a~~~~-------eLs~~~Gd~i~vl~~~~~~~W~   37 (57)
T d1opka1           3 FVALYDFVASGDN-------TLSITKGEKLRVLGYNHNGEWC   37 (57)
T ss_dssp             EEESSCBCCCSTT-------BCCBCTTCEEEEEEECTTSSEE
T ss_pred             EEECccCCCCCcC-------CcCCCCCCEEEEeEecCCCCEE
Confidence            3599999988877       8999999999999886665443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.05  E-value=0.062  Score=43.45  Aligned_cols=21  Identities=33%  Similarity=0.620  Sum_probs=8.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.++||||+|..+|...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999999853

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.05  E-value=0.074  Score=44.86  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .+..++|.||+|+||++++..+++.
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHh
Confidence            3455899999999999999999875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.1  Score=44.09  Aligned_cols=24  Identities=17%  Similarity=0.163  Sum_probs=21.4

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..++++|.||+|+|||+++.+++.
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=89.01  E-value=0.057  Score=43.99  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=18.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|++|||||||..+|...
T Consensus        20 I~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999998643

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.89  E-value=0.037  Score=40.11  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=30.0

Q ss_pred             CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCC
Q psy16959        239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD  280 (366)
Q Consensus       239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~  280 (366)
                      +.-++++|+++|.+..++       +|+|+.||++.++...+
T Consensus        10 ~~~~~~~Alydy~a~~~~-------ELs~~~Gd~i~Vl~~~~   44 (83)
T d1bb9a_          10 GFMFKVQAQHDYTATDTD-------ELQLKAGDVVLVIPFQN   44 (83)
T ss_dssp             TCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEECCSC
T ss_pred             CCCEEEEEceeECCCCCC-------EecCcCCCEEEEEEccC
Confidence            445688999999999887       89999999999998754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.80  E-value=0.085  Score=46.53  Aligned_cols=24  Identities=13%  Similarity=0.221  Sum_probs=21.1

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      .++|.|+|..|+||||||..+.++
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            467899999999999999998754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.63  E-value=0.11  Score=44.08  Aligned_cols=21  Identities=14%  Similarity=0.366  Sum_probs=18.8

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|..++...
T Consensus         9 illlG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=88.63  E-value=0.15  Score=41.49  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=21.6

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +.+|.|.|+-|+|||++++.+++..
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            3468899999999999999999764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.49  E-value=0.097  Score=42.55  Aligned_cols=21  Identities=14%  Similarity=0.347  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|.+|||||+|..++...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999765

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.43  E-value=0.028  Score=37.64  Aligned_cols=35  Identities=34%  Similarity=0.730  Sum_probs=23.7

Q ss_pred             eeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHH
Q psy16959        244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ  285 (366)
Q Consensus       244 irAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  285 (366)
                      .+|+++|.|..++       +|+|++||++.++++....+|.
T Consensus         3 a~Alydy~a~~~~-------ELs~~~Gd~v~v~~~~~~~~W~   37 (56)
T d1gria1           3 AIAKYDFKATADD-------ELSFKRGDILKVLNEECDQNWY   37 (56)
T ss_dssp             EEECSCBCCCSSS-------CCCBCTTCEEEC------CCEE
T ss_pred             EEEeeCCCCCCCC-------CcCCCCCCEEEEEeccCCCCeE
Confidence            3578999998877       8999999999988875554443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.33  E-value=0.12  Score=46.22  Aligned_cols=20  Identities=20%  Similarity=0.396  Sum_probs=16.9

Q ss_pred             EEEeCCCCCChHHHHHHHHh
Q psy16959        107 IVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~  126 (366)
                      |-|.|++|||||||+..|.+
T Consensus        30 IGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          30 IFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            34899999999999988764

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.29  E-value=0.029  Score=38.24  Aligned_cols=35  Identities=37%  Similarity=0.879  Sum_probs=29.7

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ  285 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  285 (366)
                      +++|+++|.+..++       +|+|+.||++.++...++ ||.
T Consensus         8 ~~~al~dy~a~~~~-------eLs~~~Gd~i~v~~~~~~-ww~   42 (62)
T d2iima1           8 LVIALHSYEPSHDG-------DLGFEKGEQLRILEQSGE-WWK   42 (62)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSS-EEE
T ss_pred             EEEECCCCCcCCcC-------CcCCCCCCEEEEeEEcCC-CEE
Confidence            67899999998877       899999999999988765 554

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.13  Score=41.90  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+++|.++||||+|+.++...
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=88.18  E-value=0.11  Score=47.34  Aligned_cols=29  Identities=14%  Similarity=0.245  Sum_probs=22.7

Q ss_pred             cCCCCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959         99 PRSNEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus        99 ~~~~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |.......|-|+||+|+|||||..+|+..
T Consensus        49 ~~~~~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          49 PYCGNTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             hccCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence            33334456789999999999999999853

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.12  E-value=0.12  Score=44.15  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             cEEEeCCCCCChHHHHHHHHhcc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDS  128 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~  128 (366)
                      +.+|+|..|||||||.++|.+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            45899999999999999998753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.94  E-value=0.13  Score=41.52  Aligned_cols=21  Identities=14%  Similarity=0.374  Sum_probs=19.0

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      |+|+|..|||||+|..++...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            689999999999999999754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=87.77  E-value=0.037  Score=44.67  Aligned_cols=22  Identities=14%  Similarity=0.173  Sum_probs=19.2

Q ss_pred             CCcEEEeCCCCCChHHHHHHHH
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      +.+.+|+||+|||||+|...|.
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3577899999999999999885

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.034  Score=39.98  Aligned_cols=38  Identities=16%  Similarity=0.445  Sum_probs=31.2

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC----ChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD----DPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~  287 (366)
                      +++||++|.+..++       +|+|.+||++.++++.    ...||..+
T Consensus        15 ~~~Alydy~a~~~~-------ELs~~~Gd~i~vl~~~~~~~~~~W~~g~   56 (79)
T d1uhca_          15 VYFAVYTFKARNPN-------ELSVSANQKLKILEFKDVTGNTEWWLAE   56 (79)
T ss_dssp             CEEESSCBCCCSSS-------BCCBCTTCEEEEEESCCTTSCTTEEEEE
T ss_pred             EEEECccCCCCCCC-------CccCCCCCEEEEEEeecCCCCCCEEEEE
Confidence            56799999998887       8999999999999764    35677664

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.69  E-value=0.14  Score=43.74  Aligned_cols=24  Identities=13%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +..++|.||+|+||++++..+++.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHH
Confidence            345889999999999999998875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.65  E-value=0.16  Score=44.22  Aligned_cols=25  Identities=12%  Similarity=0.173  Sum_probs=21.5

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+||+++++|..||||||++..|+.
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~   30 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAI   30 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHH
Confidence            4789999999999999997777763

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.43  E-value=0.033  Score=39.02  Aligned_cols=39  Identities=26%  Similarity=0.630  Sum_probs=31.5

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY  287 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  287 (366)
                      |-.++|+++|.+..++       +|+|+.||++.+++.. .+||..+
T Consensus         8 ~~~~vAl~~y~~~~~~-------eLs~~~Gd~v~vl~~~-~~Ww~~~   46 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPG-------DLTFTEGEEILVTQKD-GEWWTGS   46 (69)
T ss_dssp             SEEEECSSCBCCSSSS-------BCCBCTTCEEEECEEE-TTEEEEC
T ss_pred             CcEEEECccCCCCCcC-------CcCCCCCCEEEEEEec-CCEEEEE
Confidence            3556799999998877       8999999999988764 5688663

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=87.36  E-value=0.12  Score=43.26  Aligned_cols=25  Identities=8%  Similarity=0.133  Sum_probs=21.8

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ...+++|.|++|+|||+++.+++.+
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999854

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.34  E-value=0.13  Score=45.11  Aligned_cols=22  Identities=18%  Similarity=0.498  Sum_probs=18.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHH
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      +++-+|+||+|||||++...|.
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHH
Confidence            3577999999999999988773

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=87.32  E-value=0.13  Score=42.62  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=20.1

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHH
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      .+.+++|.|++|+|||+++.+++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            45789999999999999998865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=86.88  E-value=0.13  Score=47.84  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=19.9

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      +.-++|+||+|||||+|+..|+++
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHH
Confidence            345789999999999999888764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=86.67  E-value=0.15  Score=46.29  Aligned_cols=21  Identities=29%  Similarity=0.456  Sum_probs=18.6

Q ss_pred             EEEeCCCCCChHHHHHHHHhc
Q psy16959        107 IVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ++|+||+|+|||.|++.|+.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455899999999999999976

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.54  E-value=0.19  Score=45.66  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHH
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      .+.+-+|+||+|+|||++...|.
T Consensus        24 ~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          24 ESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            34577999999999999999874

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.46  E-value=0.04  Score=41.94  Aligned_cols=38  Identities=21%  Similarity=0.374  Sum_probs=31.2

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhc---CChhhHHHH
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ---DDPNWWQAY  287 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~  287 (366)
                      +.+|+++|.+..++       +|+|+.||++.++.+   ....||...
T Consensus        23 ~~~Alydy~~~~~~-------eL~f~~Gd~i~Vl~k~~~~~~~WW~g~   63 (106)
T d1i1ja_          23 MAVALQDYMAPDCR-------FLTIHRGQVVYVFSKLKGRGRLFWGGS   63 (106)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEEEEEECGGGTTEEEEE
T ss_pred             EEEEccccCCCCCC-------CccCCCCCEEEEEEecCCCCcceEEEE
Confidence            68999999998777       899999999999986   345577553

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.33  E-value=0.058  Score=36.28  Aligned_cols=31  Identities=23%  Similarity=0.656  Sum_probs=27.0

Q ss_pred             eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCC
Q psy16959        243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD  280 (366)
Q Consensus       243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~  280 (366)
                      +.+|+++|.+..++       +|+|+.||++.++...+
T Consensus         3 ~~~Alydy~a~~~~-------ELs~~~Gd~v~vl~~~~   33 (58)
T d1oota_           3 KAVALYSFAGEESG-------DLPFRKGDVITILKKSD   33 (58)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCS
T ss_pred             eEEEccCCCCCCCC-------CccCCCCCEEEEEEeec
Confidence            36899999999887       89999999999998754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.64  E-value=0.22  Score=45.10  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=20.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ....|-|+||+|+|||||..+|++
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            334577999999999999999985

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.41  E-value=0.24  Score=46.06  Aligned_cols=37  Identities=8%  Similarity=0.131  Sum_probs=23.8

Q ss_pred             EEEeCCCCCChHHHHHHHHhc----cCCcceeeeccCCCCC
Q psy16959        107 IVLIGPPNIGRHELRQRLMED----SDRFAAAIPHTSRPMK  143 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~----~~~~~~~~~~tTr~pr  143 (366)
                      |+|+|.+|+|||||.+.|...    .......+..||+.+.
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~   99 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH   99 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE
T ss_pred             EEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeee
Confidence            899999999999999999742    2222333455676653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=85.09  E-value=0.23  Score=42.87  Aligned_cols=23  Identities=9%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHh
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..+++|.|+||+|||+++..++-
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            46899999999999999988874

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=84.95  E-value=0.15  Score=45.82  Aligned_cols=22  Identities=14%  Similarity=0.258  Sum_probs=19.8

Q ss_pred             cEEEeCCCCCChHHHHHHHHhc
Q psy16959        106 PIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      =++|.||+|+|||++++.|+.-
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHh
Confidence            4899999999999999999864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=84.30  E-value=0.22  Score=42.89  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHh
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..+.+|+|++|+|||+|+..|+.
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHH
Confidence            46889999999999999998874

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.20  E-value=0.26  Score=42.55  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             CCCCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        101 SNEKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       101 ~~~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ....|+|+++|..||||||++..|+.
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999998777653

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=0.076  Score=39.18  Aligned_cols=40  Identities=25%  Similarity=0.477  Sum_probs=32.7

Q ss_pred             eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCC----hhhHHHH
Q psy16959        241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD----PNWWQAY  287 (366)
Q Consensus       241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~  287 (366)
                      +-.++|+++|.+..++       +|+|++||++.++++.+    ..||+.+
T Consensus        17 ~~~~~a~~~f~a~~~~-------eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~   60 (92)
T d1ug1a_          17 EKLFQAERNFNAAQDL-------DVSLLEGDLVGVIKKKDPMGSQNRWLID   60 (92)
T ss_dssp             GGEEEESSCCCCCSSS-------CCCCCTTCEEEEEESCCTTSCSSEEEEE
T ss_pred             CeEEEEcCCcCCCCCC-------eEEEecccEEEEEEcccccccCCceEEE
Confidence            3345899999999887       89999999999998854    5678764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.43  E-value=0.32  Score=41.77  Aligned_cols=23  Identities=17%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             CCcEEEeCCCCCChHHHHHHHHh
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      .+.++|+||+++|||++++.++-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            47899999999999999988764

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.80  E-value=0.062  Score=39.00  Aligned_cols=32  Identities=31%  Similarity=0.503  Sum_probs=28.4

Q ss_pred             CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhc
Q psy16959        240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ  278 (366)
Q Consensus       240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~  278 (366)
                      .|+-+||+++|.+..++       +|+|++||++.++.+
T Consensus         2 ~G~~~raly~y~~~~~~-------eLs~~~Gd~i~V~~~   33 (83)
T d1phta_           2 EGYQYRALYDYKKEREE-------DIDLHLGDILTVNKG   33 (83)
T ss_dssp             EEEEEEECSCBCCSSTT-------BCCBCTTCEEEEEHH
T ss_pred             CCCEEEEcCccCCCCCC-------cccccCCCEEEEEec
Confidence            37789999999999888       899999999998865

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.66  E-value=0.4  Score=41.38  Aligned_cols=26  Identities=12%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959        102 NEKRPIVLIGPPNIGRHELRQRLMED  127 (366)
Q Consensus       102 ~~~r~ivL~GpsgsGK~~L~~~L~~~  127 (366)
                      ....||+|.|++|+||+.+|+.|-..
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHh
Confidence            34568999999999999999999653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=81.76  E-value=0.33  Score=39.30  Aligned_cols=20  Identities=25%  Similarity=0.424  Sum_probs=18.7

Q ss_pred             EEEeCCCCCChHHHHHHHHh
Q psy16959        107 IVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~  126 (366)
                      |.|+|.+.+|||||+.+|..
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999999985

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.23  E-value=0.43  Score=41.74  Aligned_cols=35  Identities=11%  Similarity=0.231  Sum_probs=26.9

Q ss_pred             EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959        107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM  142 (366)
Q Consensus       107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p  142 (366)
                      |+++|...+|||||.+.|...+ .++.....+||.|
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~-~lP~~~~~~T~~~   63 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRP   63 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC-CSCCCSSCSCSSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC-cCCCCCCccccCC
Confidence            7889999999999999998653 3345555667666

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.21  E-value=0.56  Score=38.64  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             cEEEeCCCCCChHHHHHHHHhccC
Q psy16959        106 PIVLIGPPNIGRHELRQRLMEDSD  129 (366)
Q Consensus       106 ~ivL~GpsgsGK~~L~~~L~~~~~  129 (366)
                      +++++|++.||||..|.+|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            478999999999999999986543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=80.67  E-value=0.43  Score=41.70  Aligned_cols=24  Identities=21%  Similarity=0.445  Sum_probs=21.3

Q ss_pred             CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959        103 EKRPIVLIGPPNIGRHELRQRLME  126 (366)
Q Consensus       103 ~~r~ivL~GpsgsGK~~L~~~L~~  126 (366)
                      ..+++.|.||+|+|||+|+.+++.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHH
Confidence            457899999999999999999874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=80.57  E-value=0.43  Score=40.68  Aligned_cols=22  Identities=14%  Similarity=0.394  Sum_probs=19.3

Q ss_pred             CCcEEEeCCCCCChHHHHHHHH
Q psy16959        104 KRPIVLIGPPNIGRHELRQRLM  125 (366)
Q Consensus       104 ~r~ivL~GpsgsGK~~L~~~L~  125 (366)
                      .++++|+||+++|||++.+.+.
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhH
Confidence            3578999999999999998865