Psyllid ID: psy17006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
Protein Sequence
MSDSTMNNTVGIVGSRRHEPTHPSMCPGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEcccccccccccEEEcccccEEccccccccccccccccccccccccHHHccccccEEEEEEcccccEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEcccEEEEEEcccccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHccEEccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHccccccccccccEEEEEccccccccccEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEcccccccccEEEEEEEEcccEEEEEEEEcccccccccccccccEEEEcccHHHcccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHHHHHHcccccccccccccEEEcccccEEEccccccccccccccccccHHHHHHHHHHHHHccccccccccccccEEcccccccHHHHccccccccccccccccEEccHHHHHHHHHHHccccccccccEEEEEEccccccccccEEEEEcccccEEEEEEEEEccccccEEEEEEEEcccHHHHHHccEcccccEEEccccccccccccccccccHHHHHHHHHHHHHccccccccccccccEccccccccHHHHccccccccccccccccEEccHHHHHHHHHHHcccEEccccccEEEEEccccccccccEEEEEcccccEEEEEEEEEccccccEEEEEEEEEccHHHHcccEEEEEEcccccEEEEEcccccHHHHHHHHcccccEEEEcHHHHHHHHcccccEEEEEEEc
Coil and Loop (DISEMBL)
msdstmnntvgivgsrrhepthpsmcpgtstdlaslfecpvcfdyvlppiiqcqsghlvcsncrpklsccstcrgplgnirnLAMEKVAETVTfpcryqmngcnvvllhtekpehedaceyrpyhcpcpgasckwsgaLDQVMGHLNQSHKTittlqgedIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGsrkqaehftycqsghlvcsncrpklsccstcrgplgnirnLAMEKVAETVTfpcryqmngcnvvllhtekpehedaceyrpyhcpcpgasckwsgaLDQVMGHLNQSHKTittlqgedIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRLELNGhrrrltweatprsIHEGIASaimnsdclvfdSNIAQLFAdnknlginvtiat
Flexible Loop (DISEMBL)
MSDSTMNNTVGIvgsrrhepthpsMCPGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRlelnghrrrltweaTPRSIHEGIASAIMNSDCLVFDSNIAQlfadnknlginvtiat
Low Complexity Region (SEG)
MSDSTMNNTVGIVGSRRHEPTHPSMCPGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT
Disordered region (IsUnstruct)
******************************TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTI**
Disordered Region (DISOPRED)
*********************************ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT
Disordered Region (DISEMBL)
********TVGIVGSRRHEPTHPSMCPGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT
Disordered Region (DISPRO)
*****************************STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDSTMNNTVGIVGSRRHEPTHPSMCPGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	446	2.2.26 [Sep-21-2011]
Q920M9	282	E3 ubiquitin-protein liga	yes	N/A	0.504	0.797	0.814	1e-108
P61092	282	E3 ubiquitin-protein liga	yes	N/A	0.504	0.797	0.814	1e-108
Q7ZVG6	282	E3 ubiquitin-protein liga	yes	N/A	0.504	0.797	0.814	1e-108
Q8IUQ4	282	E3 ubiquitin-protein liga	yes	N/A	0.504	0.797	0.809	1e-107
Q06985	282	E3 ubiquitin-protein liga	yes	N/A	0.504	0.797	0.805	1e-107
Q8R4T2	325	E3 ubiquitin-protein liga	no	N/A	0.506	0.695	0.780	1e-102
Q06986	325	E3 ubiquitin-protein liga	no	N/A	0.506	0.695	0.780	1e-102
O43255	324	E3 ubiquitin-protein liga	no	N/A	0.506	0.697	0.780	1e-102
Q8I147	331	E3 ubiquitin-protein liga	N/A	N/A	0.504	0.679	0.787	1e-102
P21461	314	E3 ubiquitin-protein liga	yes	N/A	0.504	0.716	0.787	1e-101

>sp|Q920M9|SIAH1_RAT E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2

 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/226 (81%), Positives = 201/226 (88%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct: 55  CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 114

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            EHE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct: 115 AEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 174

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct: 175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct: 235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Induces apoptosis in cooperation with PEG3 (By similarity). Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.
Rattus norvegicus (taxid: 10116)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P61092|SIA1A_MOUSE E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1 SV=1

 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/226 (81%), Positives = 201/226 (88%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct: 55  CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 114

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            EHE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct: 115 AEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 174

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct: 175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct: 235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), the cell-surface receptor-type tyrosine kinase FLT3, the cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Required for completion of meiosis I in males. Induces apoptosis in cooperation with PEG3. Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7ZVG6|SIAH1_DANRE E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2

 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/226 (81%), Positives = 201/226 (88%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC V L HT+K
Sbjct: 55  CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEVTLPHTDK 114

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            EHE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct: 115 AEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLLHQHKSITTLQGEDIVFLATDINLPG 174

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct: 175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct: 235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8IUQ4|SIAH1_HUMAN E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2

 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/226 (80%), Positives = 201/226 (88%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct: 55  CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 114

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            +HE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct: 115 ADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 174

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct: 175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct: 235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), the cell-surface receptor-type tyrosine kinase FLT3, the cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription regulation, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Induces apoptosis in cooperation with PEG3. Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q06985|SIA1B_MOUSE E3 ubiquitin-protein ligase SIAH1B OS=Mus musculus GN=Siah1b PE=2 SV=2

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/226 (80%), Positives = 201/226 (88%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLA+EKVA +V FPC+Y  +GC + L HT+K
Sbjct: 55  CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAVEKVANSVLFPCKYSASGCEITLPHTKK 114

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            EHE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct: 115 AEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 174

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct: 175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct: 235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Confers constitutive instability to HIPK2 through proteasomal degradation. Probably triggers the ubiquitin-mediated degradation of many substrates. Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8R4T2|SIAH2_RAT E3 ubiquitin-protein ligase SIAH2 OS=Rattus norvegicus GN=Siah2 PE=1 SV=2

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/228 (78%), Positives = 197/228 (86%), Gaps = 2/228 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLG-NIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTE 279
           CQ+GHLVC+ CR KLSCC TCRG L  +IRNLAMEKVA  V FPC+Y   GC++ L HTE
Sbjct: 95  CQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTE 154

Query: 280 KPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLA 339
           KPEHED CEYRPY CPCPGASCKW G+L+ VM HL  +HK+ITTLQGEDIVFLATDINL 
Sbjct: 155 KPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLP 214

Query: 340 GAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRR 398
           GAVDWVMMQSCFGHHFMLVLEKQE  +G Q FFAIV LIG+RKQAE+F YRLELNG+RRR
Sbjct: 215 GAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRR 274

Query: 399 LTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT 446
           LTWEATPRSIH+G+A+AIMNSDCLVFD+ IA LFADN NLGINVTI+T
Sbjct: 275 LTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTIST 322

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Promotes monoubiquitination of SNCA (By similarity). Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (POU2AF1, PML, NCOR1), a cell surface receptor (DCC), an antiapoptotic protein (BAG1), and a protein involved in synaptic vesicle function in neurons (SYP). It is thereby involved in apoptosis, tumor suppression, cell cycle, transcription and signaling processes. Has some overlapping function with SIAH1. Triggers the ubiquitin-mediated degradation of TRAF2, whereas SIAH1 can not.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q06986|SIAH2_MOUSE E3 ubiquitin-protein ligase SIAH2 OS=Mus musculus GN=Siah2 PE=1 SV=2

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/228 (78%), Positives = 197/228 (86%), Gaps = 2/228 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLG-NIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTE 279
           CQ+GHLVC+ CR KLSCC TCRG L  +IRNLAMEKVA  V FPC+Y   GC++ L HTE
Sbjct: 95  CQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTE 154

Query: 280 KPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLA 339
           KPEHED CEYRPY CPCPGASCKW G+L+ VM HL  +HK+ITTLQGEDIVFLATDINL 
Sbjct: 155 KPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLP 214

Query: 340 GAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRR 398
           GAVDWVMMQSCFGHHFMLVLEKQE  +G Q FFAIV LIG+RKQAE+F YRLELNG+RRR
Sbjct: 215 GAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRR 274

Query: 399 LTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT 446
           LTWEATPRSIH+G+A+AIMNSDCLVFD+ IA LFADN NLGINVTI+T
Sbjct: 275 LTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTIST 322

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Promotes monoubiquitination of SNCA (By similarity). Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (POU2AF1, PML, NCOR1), a cell surface receptor (DCC), an antiapoptotic protein (BAG1), and a protein involved in synaptic vesicle function in neurons (SYP). It is thereby involved in apoptosis, tumor suppression, cell cycle, transcription and signaling processes. Has some overlapping function with SIAH1. Triggers the ubiquitin-mediated degradation of TRAF2, whereas SIAH1 can not.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O43255|SIAH2_HUMAN E3 ubiquitin-protein ligase SIAH2 OS=Homo sapiens GN=SIAH2 PE=1 SV=1

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/228 (78%), Positives = 197/228 (86%), Gaps = 2/228 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLG-NIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTE 279
           CQ+GHLVC+ CR KLSCC TCRG L  +IRNLAMEKVA  V FPC+Y   GC++ L HTE
Sbjct: 94  CQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTE 153

Query: 280 KPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLA 339
           KPEHED CEYRPY CPCPGASCKW G+L+ VM HL  +HK+ITTLQGEDIVFLATDINL 
Sbjct: 154 KPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLP 213

Query: 340 GAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRR 398
           GAVDWVMMQSCFGHHFMLVLEKQE  +G Q FFAIV LIG+RKQAE+F YRLELNG+RRR
Sbjct: 214 GAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRR 273

Query: 399 LTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT 446
           LTWEATPRSIH+G+A+AIMNSDCLVFD+ IA LFADN NLGINVTI+T
Sbjct: 274 LTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTIST 321

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (POU2AF1, PML, NCOR1), a cell surface receptor (DCC), an antiapoptotic protein (BAG1), and a protein involved in synaptic vesicle function in neurons (SYP). It is thereby involved in apoptosis, tumor suppression, cell cycle, transcription and signaling processes. Has some overlapping function with SIAH1. Triggers the ubiquitin-mediated degradation of TRAF2, whereas SIAH1 can not. Promotes monoubiquitination of SNCA.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8I147|SINA_DROWI E3 ubiquitin-protein ligase sina OS=Drosophila willistoni GN=sina PE=3 SV=1

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/226 (78%), Positives = 193/226 (85%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           C SGHLVC +CR KL+CC TCRGPL NIRNLAMEKVA  V FPC++   GC   L++TEK
Sbjct: 104 CSSGHLVCVSCRSKLTCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEK 163

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            EHE+ CE RPY CPCPGASCKW G LD VM HL  SHK+ITTLQGEDIVFLATDINL G
Sbjct: 164 TEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDINLPG 223

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFGHHFMLVLEKQE  DG Q FFAIVQLIGSRK+AE+F YRLELNG+RRRL
Sbjct: 224 AVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRL 283

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEA PRSIHEG+ASAI NSDCLVFD++IAQLFADN NLGINVTI+
Sbjct: 284 TWEAMPRSIHEGVASAIHNSDCLVFDTSIAQLFADNGNLGINVTIS 329

E3 ubiquitin-protein ligase that is required for specification of R7 photoreceptor cell fate in the eye by mediating the ubiquitination and subsequent proteasomal degradation of Tramtrack (ttk). E3 Ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Acts via the formation of a complex with ebi and phyl that ubiquitinates the transcription repressor ttk, a general inhibitor of photoreceptor differentiation, in a subset of photoreceptor cells in the eye, leading to the differentiation of cells into neurons. Also involved in external sensory organ development.

Drosophila willistoni (taxid: 7260)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P21461|SINA_DROME E3 ubiquitin-protein ligase sina OS=Drosophila melanogaster GN=sina PE=1 SV=2

 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/226 (78%), Positives = 193/226 (85%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           C SGHLVC +CR KL+CC TCRGPL NIRNLAMEKVA  V FPC++   GC   L++TEK
Sbjct: 87  CSSGHLVCVSCRSKLTCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEK 146

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            EHE+ CE RPY CPCPGASCKW G LD VM HL  SHK+ITTLQGEDIVFLATDINL G
Sbjct: 147 TEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDINLPG 206

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFGHHFMLVLEKQE  DG Q FFAIVQLIGSRK+AE+F YRLELNG+RRRL
Sbjct: 207 AVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRL 266

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEA PRSIHEG+ASAI NSDCLVFD++IAQLFADN NLGINVTI+
Sbjct: 267 TWEAMPRSIHEGVASAIHNSDCLVFDTSIAQLFADNGNLGINVTIS 312

E3 ubiquitin-protein ligase that is required for specification of R7 photoreceptor cell fate in the eye by mediating the ubiquitination and subsequent proteasomal degradation of Tramtrack (ttk). E3 Ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Acts via the formation of a complex with ebi and phyl that ubiquitinates the transcription repressor ttk, a general inhibitor of photoreceptor differentiation, in a subset of photoreceptor cells in the eye, leading to the differentiation of cells into neurons. Also involved in external sensory organ development.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
307173017	279	E3 ubiquitin-protein ligase SIAH1 [Campo	0.504	0.806	0.831	1e-110
322783276	279	hypothetical protein SINV_09755 [Solenop	0.504	0.806	0.831	1e-109
66503909	279	PREDICTED: e3 ubiquitin-protein ligase S	0.504	0.806	0.827	1e-109
332016238	279	E3 ubiquitin-protein ligase SIAH1 [Acrom	0.504	0.806	0.831	1e-109
156548702	278	PREDICTED: E3 ubiquitin-protein ligase S	0.504	0.809	0.818	1e-108
340710245	279	PREDICTED: e3 ubiquitin-protein ligase S	0.504	0.806	0.827	1e-108
307206490	280	E3 ubiquitin-protein ligase SIAH1 [Harpe	0.504	0.803	0.827	1e-108
260829225	272	hypothetical protein BRAFLDRAFT_129882 [	0.506	0.830	0.819	1e-107
348567334	537	PREDICTED: E3 ubiquitin-protein ligase S	0.504	0.418	0.809	1e-107
357608392	252	putative Ubiquitin ligase SIAH1 [Danaus	0.504	0.892	0.823	1e-107

>gi|307173017|gb|EFN64159.1| E3 ubiquitin-protein ligase SIAH1 [Camponotus floridanus]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/226 (83%), Positives = 204/226 (90%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVC+NCRPKLSCC TCRGPLGNIRNLAMEKVA  V FPC+Y  +GC V L+HTEK
Sbjct: 52  CQSGHLVCTNCRPKLSCCPTCRGPLGNIRNLAMEKVASNVMFPCKYSTSGCTVSLVHTEK 111

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            +HEDACE+RPY CPCPGASCKW G+L+QVM HL  SHK+ITTLQGEDIVFLATDINL G
Sbjct: 112 ADHEDACEFRPYSCPCPGASCKWQGSLEQVMSHLMMSHKSITTLQGEDIVFLATDINLPG 171

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFGHHFMLVLEKQE  DG Q FFAIVQLIGSRKQAE+F YRLELNGHRRRL
Sbjct: 172 AVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKQAENFAYRLELNGHRRRL 231

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEA PRSIHEG++SAI+NSDCLVFD++IAQLFADN NLGINVTI+
Sbjct: 232 TWEAMPRSIHEGVSSAILNSDCLVFDTSIAQLFADNGNLGINVTIS 277

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322783276|gb|EFZ10860.1| hypothetical protein SINV_09755 [Solenopsis invicta]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/226 (83%), Positives = 204/226 (90%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVC+NCRPKLSCC TCRGPLGNIRNLAMEKVA  V FPC+Y  +GC V L+HTEK
Sbjct: 52  CQSGHLVCTNCRPKLSCCPTCRGPLGNIRNLAMEKVASNVMFPCKYSTSGCAVSLVHTEK 111

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            +HEDACE+RPY CPCPGASCKW G+L+QVM HL  SHK+ITTLQGEDIVFLATDINL G
Sbjct: 112 ADHEDACEFRPYSCPCPGASCKWQGSLEQVMPHLIMSHKSITTLQGEDIVFLATDINLPG 171

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFGHHFMLVLEKQE  DG Q FFAIVQLIGSRKQAE+F YRLELNGHRRRL
Sbjct: 172 AVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKQAENFAYRLELNGHRRRL 231

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEA PRSIHEG++SAI+NSDCLVFD++IAQLFADN NLGINVTI+
Sbjct: 232 TWEAMPRSIHEGVSSAILNSDCLVFDTSIAQLFADNGNLGINVTIS 277

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66503909|ref|XP_394284.2| PREDICTED: e3 ubiquitin-protein ligase Siah1 [Apis mellifera] gi|380026395|ref|XP_003696937.1| PREDICTED: E3 ubiquitin-protein ligase Siah1-like [Apis florea]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/226 (82%), Positives = 204/226 (90%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCSNCRPKL+CC TCRGPLGNIRNLAMEKVA  V FPC+Y  +GC V L+HTEK
Sbjct: 52  CQSGHLVCSNCRPKLNCCPTCRGPLGNIRNLAMEKVAGNVMFPCKYSTSGCTVSLVHTEK 111

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            +HEDACE+RPY CPCPGASCKW G+L+QVM HL  SHK+ITTLQGEDIVFLATDINL G
Sbjct: 112 ADHEDACEFRPYSCPCPGASCKWQGSLEQVMPHLVMSHKSITTLQGEDIVFLATDINLPG 171

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFGHHFMLVLEKQE  DG Q FFAIVQLIGSRKQAE+F YRLELNGH+RRL
Sbjct: 172 AVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKQAENFAYRLELNGHKRRL 231

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEA PRSIHEG++SAI+NSDCLVFD++IAQLFADN NLGINVTI+
Sbjct: 232 TWEAMPRSIHEGVSSAILNSDCLVFDTSIAQLFADNGNLGINVTIS 277

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016238|gb|EGI57151.1| E3 ubiquitin-protein ligase SIAH1 [Acromyrmex echinatior]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/226 (83%), Positives = 204/226 (90%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVC+NCRPKLSCC TCRGPLGNIRNLAMEKVA  V FPC+Y  +GC V L+HTEK
Sbjct: 52  CQSGHLVCTNCRPKLSCCPTCRGPLGNIRNLAMEKVASNVMFPCKYSTSGCTVSLVHTEK 111

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            +HEDACE+RPY CPCPGASCKW G+L+QVM HL  SHK+ITTLQGEDIVFLATDINL G
Sbjct: 112 ADHEDACEFRPYSCPCPGASCKWQGSLEQVMPHLIMSHKSITTLQGEDIVFLATDINLPG 171

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFGHHFMLVLEKQE  DG Q FFAIVQLIGSRKQAE+F YRLELNGHRRRL
Sbjct: 172 AVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKQAENFAYRLELNGHRRRL 231

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEA PRSIHEG++SAI+NSDCLVFD++IAQLFADN NLGINVTI+
Sbjct: 232 TWEAMPRSIHEGVSSAILNSDCLVFDTSIAQLFADNGNLGINVTIS 277

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548702|ref|XP_001602899.1| PREDICTED: E3 ubiquitin-protein ligase SIAH1-like [Nasonia vitripennis]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/226 (81%), Positives = 200/226 (88%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCS CRPKL+CC TCRGPLGNIRNLAMEKVA  V FPC+Y  +GC   L+HTEK
Sbjct: 51  CQSGHLVCSTCRPKLTCCPTCRGPLGNIRNLAMEKVASNVMFPCKYSTSGCAATLVHTEK 110

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
           P+HED CE+RPY CPCPGASCKW GAL+ VM HL  SHK+ITTLQGEDIVFLATDINL G
Sbjct: 111 PDHEDTCEFRPYSCPCPGASCKWQGALEMVMNHLVMSHKSITTLQGEDIVFLATDINLPG 170

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCF HHFMLVLEKQE  DG Q FFAIVQLIGSRKQAE+F YRLELNGHRRRL
Sbjct: 171 AVDWVMMQSCFNHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKQAENFAYRLELNGHRRRL 230

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEA PRSIHEG++SAI+NSDCLVFD++IAQLFADN NLGINVTI+
Sbjct: 231 TWEAMPRSIHEGVSSAILNSDCLVFDTSIAQLFADNGNLGINVTIS 276

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710245|ref|XP_003393704.1| PREDICTED: e3 ubiquitin-protein ligase SIAH1-like [Bombus terrestris] gi|350423551|ref|XP_003493516.1| PREDICTED: E3 ubiquitin-protein ligase SIAH1-like [Bombus impatiens] gi|383852216|ref|XP_003701624.1| PREDICTED: E3 ubiquitin-protein ligase SIAH1-like [Megachile rotundata]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/226 (82%), Positives = 204/226 (90%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCSNCRPKL+CC TCRGPLGNIRNLAMEKVA  V FPC+Y  +GC V L+HTEK
Sbjct: 52  CQSGHLVCSNCRPKLNCCPTCRGPLGNIRNLAMEKVAGNVMFPCKYSTSGCTVSLVHTEK 111

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            +HEDACE+RPY CPCPGASCKW G+L+QVM HL  SHK+ITTLQGEDIVFLATDINL G
Sbjct: 112 ADHEDACEFRPYSCPCPGASCKWQGSLEQVMPHLVMSHKSITTLQGEDIVFLATDINLPG 171

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFGHHFMLVLEKQE  DG Q FFAIVQLIGSRKQAE+F YRLELNGH+RRL
Sbjct: 172 AVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKQAENFAYRLELNGHKRRL 231

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEA PRSIHEG++SAI+NSDCLVFD++IAQLFADN NLGINVTI+
Sbjct: 232 TWEAMPRSIHEGVSSAILNSDCLVFDTSIAQLFADNGNLGINVTIS 277

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206490|gb|EFN84516.1| E3 ubiquitin-protein ligase SIAH1 [Harpegnathos saltator]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/226 (82%), Positives = 203/226 (89%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVC+NCRPKLSCC TCRGPLGNIRNLAMEKVA  V FPC+Y  +GC V L+HTEK
Sbjct: 53  CQSGHLVCTNCRPKLSCCPTCRGPLGNIRNLAMEKVASNVMFPCKYSTSGCTVSLVHTEK 112

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            +HEDACEYRPY CPCPGASCKW G+L+QVM HL  SHK+ITTLQGEDIVFLATDINL G
Sbjct: 113 ADHEDACEYRPYSCPCPGASCKWQGSLEQVMPHLVMSHKSITTLQGEDIVFLATDINLPG 172

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCF H+FMLVLEKQE  DG Q FFAIVQLIGSRKQAE+F YRLELNGHRRRL
Sbjct: 173 AVDWVMMQSCFNHNFMLVLEKQEKYDGHQQFFAIVQLIGSRKQAENFAYRLELNGHRRRL 232

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEA PRSIHEG++SAI+NSDCLVFD++IAQLFADN NLGINVTI+
Sbjct: 233 TWEAMPRSIHEGVSSAILNSDCLVFDTSIAQLFADNGNLGINVTIS 278

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260829225|ref|XP_002609562.1| hypothetical protein BRAFLDRAFT_129882 [Branchiostoma floridae] gi|229294924|gb|EEN65572.1| hypothetical protein BRAFLDRAFT_129882 [Branchiostoma floridae]

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/227 (81%), Positives = 204/227 (89%), Gaps = 1/227 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCS+CRPKLSCC TCRGPLGNIRNLAMEKVA TV FPC+Y   GC V LLHTEK
Sbjct: 45  CQSGHLVCSSCRPKLSCCPTCRGPLGNIRNLAMEKVASTVMFPCKYASAGCPVTLLHTEK 104

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
           P+HE+ C++RPY CPCPG+SCKW G+LD VM HL  +HK+ITTLQGEDIVFLATDINL G
Sbjct: 105 PDHEEICDFRPYSCPCPGSSCKWQGSLDAVMPHLTHAHKSITTLQGEDIVFLATDINLPG 164

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFGH+FMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct: 165 AVDWVMMQSCFGHNFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 224

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT 446
           TWEATPRSIHEG+ASAI +SDCLVFD+NIA+LFADN NLGINVTI+T
Sbjct: 225 TWEATPRSIHEGVASAISSSDCLVFDTNIARLFADNGNLGINVTIST 271

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348567334|ref|XP_003469455.1| PREDICTED: E3 ubiquitin-protein ligase SIAH1-like [Cavia porcellus]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/226 (80%), Positives = 201/226 (88%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct: 310 CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 369

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            +HE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct: 370 ADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 429

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct: 430 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 489

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct: 490 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 535

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357608392|gb|EHJ65971.1| putative Ubiquitin ligase SIAH1 [Danaus plexippus]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/226 (82%), Positives = 201/226 (88%), Gaps = 1/226 (0%)

Query: 221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
           CQSGHLVCS+CRPKLSCC TCRGPLGNIRNLAMEKVA  V FPC++   GC V L+HTEK
Sbjct: 25  CQSGHLVCSSCRPKLSCCPTCRGPLGNIRNLAMEKVASNVMFPCKHSNTGCTVTLVHTEK 84

Query: 281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
            EHE+ACE+RPY CPCPGASCKW G LDQVM HL  SHK+ITTLQGEDIVFLATDINL G
Sbjct: 85  AEHEEACEFRPYSCPCPGASCKWQGGLDQVMPHLMMSHKSITTLQGEDIVFLATDINLPG 144

Query: 341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
           AVDWVMMQSCF HHFMLVLEKQE  DG Q FFAIVQLIGSRK+AE+F YRLELNGHRRRL
Sbjct: 145 AVDWVMMQSCFNHHFMLVLEKQEKFDGHQQFFAIVQLIGSRKEAENFAYRLELNGHRRRL 204

Query: 400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
           TWEA PRSIHEG++SAIMNSDCLVFD+++AQLFADN NLGINVTI+
Sbjct: 205 TWEAMPRSIHEGVSSAIMNSDCLVFDTSLAQLFADNGNLGINVTIS 250

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
MGI|MGI:108064	282	Siah1a "seven in absentia 1A"	0.504	0.797	0.814	5.4e-102
RGD|620449	282	Siah1a "seven in absentia 1A"	0.504	0.797	0.814	5.4e-102
UNIPROTKB|Q920M9	282	Siah1 "E3 ubiquitin-protein li	0.504	0.797	0.814	5.4e-102
ZFIN|ZDB-GENE-010319-31	282	siah1 "seven in absentia homol	0.504	0.797	0.814	1.1e-101
UNIPROTKB|F1P2G0	282	SIAH1 "Uncharacterized protein	0.504	0.797	0.809	1.1e-101
UNIPROTKB|F1N5G3	313	SIAH1 "Uncharacterized protein	0.504	0.718	0.809	1.1e-101
UNIPROTKB|F1PEG8	308	SIAH1 "Uncharacterized protein	0.504	0.730	0.809	1.1e-101
UNIPROTKB|Q8IUQ4	282	SIAH1 "E3 ubiquitin-protein li	0.504	0.797	0.809	1.1e-101
MGI|MGI:108063	282	Siah1b "seven in absentia 1B"	0.504	0.797	0.805	3e-101
UNIPROTKB|O43255	324	SIAH2 "E3 ubiquitin-protein li	0.506	0.697	0.780	1.5e-97

MGI|MGI:108064 Siah1a "seven in absentia 1A" [Mus musculus (taxid:10090)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 184/226 (81%), Positives = 201/226 (88%)

Query:   221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
             CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct:    55 CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 114

Query:   281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
              EHE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct:   115 AEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 174

Query:   341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
             AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct:   175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query:   400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
             TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct:   235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007141 "male meiosis I" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO;IDA

GO:0009791 "post-embryonic development" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030163 "protein catabolic process" evidence=ISO

GO:0030877 "beta-catenin destruction complex" evidence=ISO

GO:0031648 "protein destabilization" evidence=ISO

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051402 "neuron apoptotic process" evidence=ISO

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=ISO

RGD|620449 Siah1a "seven in absentia 1A" [Rattus norvegicus (taxid:10116)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 184/226 (81%), Positives = 201/226 (88%)

Query:   221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
             CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct:    55 CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 114

Query:   281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
              EHE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct:   115 AEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 174

Query:   341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
             AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct:   175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query:   400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
             TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct:   235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007141 "male meiosis I" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=ISO;IPI

GO:0008270 "zinc ion binding" evidence=ISO;ISS

GO:0009791 "post-embryonic development" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030163 "protein catabolic process" evidence=ISO

GO:0030877 "beta-catenin destruction complex" evidence=ISO;ISS

GO:0031648 "protein destabilization" evidence=IMP

GO:0040014 "regulation of multicellular organism growth" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;ISS;IDA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0051402 "neuron apoptotic process" evidence=IMP

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA;ISO

UNIPROTKB|Q920M9 Siah1 "E3 ubiquitin-protein ligase SIAH1" [Rattus norvegicus (taxid:10116)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 184/226 (81%), Positives = 201/226 (88%)

Query:   221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
             CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct:    55 CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 114

Query:   281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
              EHE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct:   115 AEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 174

Query:   341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
             AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct:   175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query:   400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
             TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct:   235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-010319-31 siah1 "seven in absentia homolog 1 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 184/226 (81%), Positives = 201/226 (88%)

Query:   221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
             CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC V L HT+K
Sbjct:    55 CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEVTLPHTDK 114

Query:   281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
              EHE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct:   115 AEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLLHQHKSITTLQGEDIVFLATDINLPG 174

Query:   341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
             AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct:   175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query:   400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
             TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct:   235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0051402 "neuron apoptotic process" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1P2G0 SIAH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 183/226 (80%), Positives = 201/226 (88%)

Query:   221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
             CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct:    55 CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 114

Query:   281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
              +HE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct:   115 ADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 174

Query:   341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
             AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct:   175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query:   400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
             TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct:   235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030877 "beta-catenin destruction complex" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|F1N5G3 SIAH1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 183/226 (80%), Positives = 201/226 (88%)

Query:   221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
             CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct:    86 CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 145

Query:   281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
              +HE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct:   146 ADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 205

Query:   341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
             AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct:   206 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 265

Query:   400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
             TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct:   266 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 311

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F1PEG8 SIAH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 183/226 (80%), Positives = 201/226 (88%)

Query:   221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
             CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct:    81 CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 140

Query:   281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
              +HE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct:   141 ADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 200

Query:   341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
             AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct:   201 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 260

Query:   400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
             TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct:   261 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 306

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q8IUQ4 SIAH1 "E3 ubiquitin-protein ligase SIAH1" [Homo sapiens (taxid:9606)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 183/226 (80%), Positives = 201/226 (88%)

Query:   221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
             CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLAMEKVA +V FPC+Y  +GC + L HTEK
Sbjct:    55 CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEK 114

Query:   281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
              +HE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct:   115 ADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 174

Query:   341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
             AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct:   175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query:   400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
             TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct:   235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

GO:0007049 "cell cycle" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031648 "protein destabilization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISS;IDA

GO:0030163 "protein catabolic process" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

GO:0051402 "neuron apoptotic process" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IMP

GO:0030877 "beta-catenin destruction complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0006508 "proteolysis" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

MGI|MGI:108063 Siah1b "seven in absentia 1B" [Mus musculus (taxid:10090)]

 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 182/226 (80%), Positives = 201/226 (88%)

Query:   221 CQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280
             CQSGHLVCSNCRPKL+CC TCRGPLG+IRNLA+EKVA +V FPC+Y  +GC + L HT+K
Sbjct:    55 CQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAVEKVANSVLFPCKYSASGCEITLPHTKK 114

Query:   281 PEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLAG 340
              EHE+ CE+RPY CPCPGASCKW G+LD VM HL   HK+ITTLQGEDIVFLATDINL G
Sbjct:   115 AEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPG 174

Query:   341 AVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRL 399
             AVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLIG+RKQAE+F YRLELNGHRRRL
Sbjct:   175 AVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRL 234

Query:   400 TWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIA 445
             TWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N NLGINVTI+
Sbjct:   235 TWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|O43255 SIAH2 "E3 ubiquitin-protein ligase SIAH2" [Homo sapiens (taxid:9606)]

 Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
 Identities = 178/228 (78%), Positives = 197/228 (86%)

Query:   221 CQSGHLVCSNCRPKLSCCSTCRGPLG-NIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTE 279
             CQ+GHLVC+ CR KLSCC TCRG L  +IRNLAMEKVA  V FPC+Y   GC++ L HTE
Sbjct:    94 CQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTE 153

Query:   280 KPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINLA 339
             KPEHED CEYRPY CPCPGASCKW G+L+ VM HL  +HK+ITTLQGEDIVFLATDINL 
Sbjct:   154 KPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLP 213

Query:   340 GAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRR 398
             GAVDWVMMQSCFGHHFMLVLEKQE  +G Q FFAIV LIG+RKQAE+F YRLELNG+RRR
Sbjct:   214 GAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRR 273

Query:   399 LTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT 446
             LTWEATPRSIH+G+A+AIMNSDCLVFD+ IA LFADN NLGINVTI+T
Sbjct:   274 LTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTIST 321

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IEA

GO:0031624 "ubiquitin conjugating enzyme binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IMP

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0044257 "cellular protein catabolic process" evidence=IGI

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IGI

GO:0007411 "axon guidance" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q920M9	SIAH1_RAT	6, ., 3, ., 2, ., -	0.8141	0.5044	0.7978	yes	N/A
Q965X6	SIAH1_CAEEL	6, ., 3, ., 2, ., -	0.6724	0.5112	0.5441	yes	N/A
Q06985	SIA1B_MOUSE	6, ., 3, ., 2, ., -	0.8053	0.5044	0.7978	yes	N/A
P21461	SINA_DROME	6, ., 3, ., 2, ., -	0.7876	0.5044	0.7165	yes	N/A
Q7ZVG6	SIAH1_DANRE	6, ., 3, ., 2, ., -	0.8141	0.5044	0.7978	yes	N/A
P61092	SIA1A_MOUSE	6, ., 3, ., 2, ., -	0.8141	0.5044	0.7978	yes	N/A
Q8IUQ4	SIAH1_HUMAN	6, ., 3, ., 2, ., -	0.8097	0.5044	0.7978	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	446
pfam03145	198	pfam03145, Sina, Seven in absentia protein family	5e-88
cd03829	127	cd03829, Sina, Seven in absentia (Sina) protein fa	3e-74
pfam03145	198	pfam03145, Sina, Seven in absentia protein family	3e-58
cd03829	127	cd03829, Sina, Seven in absentia (Sina) protein fa	4e-34
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	0.002

>gnl|CDD|190542 pfam03145, Sina, Seven in absentia protein family

 Score =  266 bits (681), Expect = 5e-88
 Identities = 111/198 (56%), Positives = 135/198 (68%), Gaps = 2/198 (1%)

Query: 248 IRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGAL 307
           IRNLA+EKVA  V FPC++   GC V L    K  HE+ CEY+PY CP PGA CKW G  
Sbjct: 1   IRNLAVEKVASKVLFPCKHAALGCPVRLPLQLKDWHEERCEYKPYFCPMPGAKCKWQGDE 60

Query: 308 DQVMGHLNQSHKTITTLQGE-DIVFLATDINLAGAVDWVMMQ-SCFGHHFMLVLEKQEID 365
           D +M HL   HK ITT  GE DIV+LA  +NL GA  WVM+Q SCFG HF L LEK ++ 
Sbjct: 61  DDLMPHLTADHKVITTEGGEFDIVYLAAAVNLVGAPTWVMVQFSCFGRHFNLYLEKYDLG 120

Query: 366 GRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFD 425
           G Q +FA++QLIG RK+AE+F Y LEL G+RR+LTW+A PRSI +    AI   DCL+F 
Sbjct: 121 GTQMYFAVIQLIGERKEAENFAYELELGGNRRKLTWQAFPRSIRDDHKFAIDGRDCLIFL 180

Query: 426 SNIAQLFADNKNLGINVT 443
            N A+ FA++KNL   VT
Sbjct: 181 RNAARFFAEDKNLHYRVT 198

The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non- neuronal cell type. The Sina protein contains an N-terminal RING finger domain pfam00097. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that thus Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is described in pfam00097, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana. Length = 198

>gnl|CDD|239753 cd03829, Sina, Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

 Score =  228 bits (582), Expect = 3e-74
 Identities = 103/127 (81%), Positives = 114/127 (89%), Gaps = 1/127 (0%)

Query: 321 ITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLIGS 379
           +TTLQGEDIVFLATDINL GA DWVMMQSCFGHHFMLVLEKQE+ +G Q FFA VQLIG+
Sbjct: 1   VTTLQGEDIVFLATDINLPGATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQLIGT 60

Query: 380 RKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLG 439
            KQAE+FTYRLELNG+RRRLTWEATPRSI EG AS I NSDCLVFD++IAQLF++N NLG
Sbjct: 61  EKQAENFTYRLELNGNRRRLTWEATPRSIREGHASVIDNSDCLVFDTSIAQLFSENGNLG 120

Query: 440 INVTIAT 446
           INVTI+ 
Sbjct: 121 INVTISG 127

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-mediated degradation resulting in the downregulation of auxin, a hormone that controls many aspects of plant development. Other targets of Sina family proteins include c-Myb, synaptophysin, group 1 glutamate receptors, promyelocytic leukemia protein, alpha-synuclein, synphilin-1 and alpha-ketoglutarate dehydrogenase, among others. Sina proteins also bind proteins that are not targets for ubiquitination such as Phyl, adenomatous polyposis coli, VAV, BAG-1 and Dab-1. Siah binds to a consensus motif, PXAXVXP, which is present in Siah-binding proteins. Siah is a dimeric protein consisting of an N-terminal RING domain, two zinc finger motifs and a C-terminal substrate-binding domain (SBD); this SBD contains an eight-stranded antiparallel beta-sandwich fold similar to the MATH (meprin and TRAF-C homology) domain. Length = 127

>gnl|CDD|190542 pfam03145, Sina, Seven in absentia protein family

 Score =  189 bits (482), Expect = 3e-58
 Identities = 82/143 (57%), Positives = 98/143 (68%), Gaps = 2/143 (1%)

Query: 80  IRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGAL 139
           IRNLA+EKVA  V FPC++   GC V L    K  HE+ CEY+PY CP PGA CKW G  
Sbjct: 1   IRNLAVEKVASKVLFPCKHAALGCPVRLPLQLKDWHEERCEYKPYFCPMPGAKCKWQGDE 60

Query: 140 DQVMGHLNQSHKTITTLQGE-DIVFLATDINLAGAVDWVMMQ-SCFGHHFMLVLEKQEID 197
           D +M HL   HK ITT  GE DIV+LA  +NL GA  WVM+Q SCFG HF L LEK ++ 
Sbjct: 61  DDLMPHLTADHKVITTEGGEFDIVYLAAAVNLVGAPTWVMVQFSCFGRHFNLYLEKYDLG 120

Query: 198 GRQHFFAIVQLIGSRKQAEHFTY 220
           G Q +FA++QLIG RK+AE+F Y
Sbjct: 121 GTQMYFAVIQLIGERKEAENFAY 143

The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non- neuronal cell type. The Sina protein contains an N-terminal RING finger domain pfam00097. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that thus Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is described in pfam00097, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana. Length = 198

>gnl|CDD|239753 cd03829, Sina, Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

 Score =  123 bits (311), Expect = 4e-34
 Identities = 57/69 (82%), Positives = 62/69 (89%), Gaps = 1/69 (1%)

Query: 153 ITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLIGS 211
           +TTLQGEDIVFLATDINL GA DWVMMQSCFGHHFMLVLEKQE+ +G Q FFA VQLIG+
Sbjct: 1   VTTLQGEDIVFLATDINLPGATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQLIGT 60

Query: 212 RKQAEHFTY 220
            KQAE+FTY
Sbjct: 61  EKQAENFTY 69

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-mediated degradation resulting in the downregulation of auxin, a hormone that controls many aspects of plant development. Other targets of Sina family proteins include c-Myb, synaptophysin, group 1 glutamate receptors, promyelocytic leukemia protein, alpha-synuclein, synphilin-1 and alpha-ketoglutarate dehydrogenase, among others. Sina proteins also bind proteins that are not targets for ubiquitination such as Phyl, adenomatous polyposis coli, VAV, BAG-1 and Dab-1. Siah binds to a consensus motif, PXAXVXP, which is present in Siah-binding proteins. Siah is a dimeric protein consisting of an N-terminal RING domain, two zinc finger motifs and a C-terminal substrate-binding domain (SBD); this SBD contains an eight-stranded antiparallel beta-sandwich fold similar to the MATH (meprin and TRAF-C homology) domain. Length = 127

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCR 74
           ECP+C D +  P++    GH+ C  C  +     S C  CR
Sbjct: 3  LECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	446
PF03145	198	Sina: Seven in absentia protein family; InterPro:	100.0
KOG3002|consensus	299		100.0
cd03829	127	Sina Seven in absentia (Sina) protein family, C-te	100.0
KOG3002|consensus	299		99.96
PF03145	198	Sina: Seven in absentia protein family; InterPro:	99.83
KOG0297|consensus	391		99.47
cd03829	127	Sina Seven in absentia (Sina) protein family, C-te	99.43
PLN03086	567	PRLI-interacting factor K; Provisional	98.96
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	98.54
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.38
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	98.15
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.09
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.08
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.07
KOG0320|consensus	187		98.05
PLN03086	567	PRLI-interacting factor K; Provisional	98.02
KOG0287|consensus	442		98.0
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	97.99
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.96
KOG0823|consensus	230		97.75
KOG0297|consensus	391		97.75
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	97.71
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.68
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.62
PF14634	44	zf-RING_5: zinc-RING finger domain	97.5
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.36
PHA02929	238	N1R/p28-like protein; Provisional	97.34
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.28
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.1
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.01
KOG0311|consensus	381		96.94
KOG2164|consensus	513		96.9
KOG0317|consensus	293		96.85
PHA02926	242	zinc finger-like protein; Provisional	96.47
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	96.26
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	96.11
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	95.88
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	95.79
KOG2177|consensus	386		95.49
KOG4159|consensus	398		95.42
KOG0978|consensus	698		95.36
COG5152	259	Uncharacterized conserved protein, contains RING a	95.04
KOG2660|consensus	331		93.8
KOG1813|consensus	313		93.78
KOG4172|consensus	62		93.55
KOG2879|consensus	298		93.49
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.47
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	93.25
COG5222	427	Uncharacterized conserved protein, contains RING Z	93.02
KOG0824|consensus	324		91.5
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	91.23
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	91.19
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	90.99
COG5175	480	MOT2 Transcriptional repressor [Transcription]	90.93
KOG4275|consensus	350		90.63
KOG2462|consensus	279		90.24
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	88.83
PF14634	44	zf-RING_5: zinc-RING finger domain	88.59
KOG4739|consensus	233		88.49
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	88.36
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	88.23
KOG0320|consensus	187		85.71
KOG4265|consensus	349		84.26
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	82.61
KOG0802|consensus	543		81.8
KOG1002|consensus	791		81.17

>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila

Probab=100.00  E-value=5.9e-40  Score=305.84  Aligned_cols=196  Identities=44%  Similarity=0.871  Sum_probs=155.0

Q ss_pred             cccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCccCCCCCCCcccccChhHHHHHhhhccCcceeecCc
Q psy17006        248 IRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGE  327 (446)
Q Consensus       248 ~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g~~~~l~~H~~~~H~~~~~~~~~  327 (446)
                      +||++||+++.++.+||+|+..||++.+++.++.+||++|+|+|+.||+++.+|+|+|..++|..|+.+.|.+.++..+.
T Consensus         1 iR~~alE~v~~~~~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~   80 (198)
T PF03145_consen    1 IRNRALEKVAESIKFPCKNAKYGCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHLRDKHSWNVTDNGT   80 (198)
T ss_dssp             --------------EE-CCGGGT---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHHHHHTTTSEEEESS
T ss_pred             CCcHHHHHHHhhceecCCCCCCCCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHHHHHCCCccccCcc
Confidence            58999999999999999999999999999999999999999999999998889999999999999999999998765554


Q ss_pred             -eEEEeeeccccccceeEEEEe-eecceEEEEEEEeecccCceeEEEEEEEeCCcccccccEEEEEEecCCceEEEEecc
Q psy17006        328 -DIVFLATDINLAGAVDWVMMQ-SCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATP  405 (446)
Q Consensus       328 -~~~f~~~~~~~~~~~~~~~~~-~~~g~~Fll~~~~~~~~~~~~~~~~v~~iG~~~~a~~f~Yel~v~~~~r~l~~~~~~  405 (446)
                       .+.|...+.+..+..+|++++ ++||++|+|++.++...+..+++++|+++|++++|++|+|+|++.+++|+|+|++.|
T Consensus        81 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~v~~~~v~~~G~~~~a~~f~Yel~~~~~~rkl~~~~~p  160 (198)
T PF03145_consen   81 FSISFLHSDINSVESPDWVLVQFSCFGKLFLLYVQKFELEGNAVYFAVVCYIGPAEEASNFSYELEVRSNGRKLTWQSFP  160 (198)
T ss_dssp             -EEEEEECTTT-SSSEEEEEEE-EETTEEEEEEEEEEEEETEEEEEEEEEESS-HHHHTTEEEEEEEEETTEEEEEEE--
T ss_pred             ceEEEeeecccccCCceEEEeecccCCccEEEEEEEEccCCceEEEEEEEEccCchhhhceEEEEEEecCCcEEEEEEcC
Confidence             577888777766778999988 999999999999877667788889999999999999999999999999999999999


Q ss_pred             cchhhhhhhhhcCCCEEEEehhhHhhhhcCCceEEEEE
Q psy17006        406 RSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVT  443 (446)
Q Consensus       406 ~s~~~~~~~~~~~~dcl~i~~~~~~~f~~~~~l~~~v~  443 (446)
                      +|++++.++++++.||+++..+++++|++||+|.|+||
T Consensus       161 ~si~~~~~~~~~~~d~li~~~~~~~~f~~~~~L~~~v~  198 (198)
T PF03145_consen  161 RSIREDIDDAIESRDCLIINENAAQFFSEDGNLRYRVT  198 (198)
T ss_dssp             EETTT-SHHHHHCT-SEEEEHHHHHHHECTTEEEEEEE
T ss_pred             cchhhhHHhhccCCcEEEEchHHHHhcCCCCeEEEEeC
Confidence            99999999999999999999999999999999999997

The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.

>KOG3002|consensus

Probab=100.00  E-value=1.5e-39  Score=315.74  Aligned_cols=231  Identities=41%  Similarity=0.756  Sum_probs=212.6

Q ss_pred             ccceeeeccCcccccCcccCC-CCCCCCCCCCCccccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCcc
Q psy17006        215 AEHFTYCQSGHLVCSNCRPKL-SCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYH  293 (446)
Q Consensus       215 ~~~~~~C~~gh~~C~~C~~~~-~~Cp~Cr~~~~~~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~  293 (446)
                      ..+++||+|||++|++|+.++ ..||+||.+++.+|++++|++++.+.+||+|..+||++.++|.+..+||+.|.|+|+.
T Consensus        59 ~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~~Y~~~~~HE~~C~f~~~~  138 (299)
T KOG3002|consen   59 SPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSFPYGEKSKHEKVCEFRPCS  138 (299)
T ss_pred             cccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceeeccccccccccccccCCcC
Confidence            467899999999999999665 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccChhHHHHHhhhccCcce-eecCceEEEeeeccccccceeEEEEe-eecceEEEEEEEeecccCc-eeE
Q psy17006        294 CPCPGASCKWSGALDQVMGHLNQSHKTIT-TLQGEDIVFLATDINLAGAVDWVMMQ-SCFGHHFMLVLEKQEIDGR-QHF  370 (446)
Q Consensus       294 Cp~~~~~C~~~g~~~~l~~H~~~~H~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~g~~Fll~~~~~~~~~~-~~~  370 (446)
                      ||.++..|+|+|.+++|+.|+...|+..+ ++.+.+++|.+++.++.+..+|++.+ .++|..|.+++..+...+. .+|
T Consensus       139 CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~y  218 (299)
T KOG3002|consen  139 CPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATWTLKTSVCFGREFGLLFEVQCFREPHGVY  218 (299)
T ss_pred             CCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchhheeeeecCcEEEeeeeeehhhcCCCceE
Confidence            99999999999999999999999999844 67888999999999999999996544 4999999999998776655 667


Q ss_pred             EEEEEEeCCcccccccEEEEEEecCCceEEEEecccchhhhhhhhhcCCCEEEEehhhHhhhhcCC-ceEEEEEEe
Q psy17006        371 FAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNK-NLGINVTIA  445 (446)
Q Consensus       371 ~~~v~~iG~~~~a~~f~Yel~v~~~~r~l~~~~~~~s~~~~~~~~~~~~dcl~i~~~~~~~f~~~~-~l~~~v~i~  445 (446)
                      +++++.+|.+++|++|+|+|++++.+++|+|++.++|++++++.+.+..|+++||.+++++|..++ +|.|++|++
T Consensus       219 ~tv~~i~~~~~e~~~fsy~L~~~~~~~klt~~s~~~s~~~kvs~~~p~~dfm~ip~~~~~~~~~~~~~l~i~~~~~  294 (299)
T KOG3002|consen  219 VTVNRIAPSAPEAGEFSYSLALGGSGRKLTWQSPPRSIIQKVSKVRPEDDFMLIPRSLLCLFSLLKMELKIRVTGR  294 (299)
T ss_pred             EEeehhccCCCcccccceeeecCCCCceEeecCCcceeecccceeccCCCceeccHHHhhcccccCCceeeccchh
Confidence            777777799999999999999999999999999999999999999999999999999999998666 899999873

>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

Probab=100.00  E-value=2.7e-34  Score=236.61  Aligned_cols=125  Identities=82%  Similarity=1.272  Sum_probs=120.4

Q ss_pred             eeecCceEEEeeeccccccceeEEEEeeecceEEEEEEEeecc-cCceeEEEEEEEeCCcccccccEEEEEEecCCceEE
Q psy17006        322 TTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLT  400 (446)
Q Consensus       322 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~Fll~~~~~~~-~~~~~~~~~v~~iG~~~~a~~f~Yel~v~~~~r~l~  400 (446)
                      .+++|++++|+++|++++++++|+++|+|||+||+|++++++. .+.++|||+|++||++.+|.+|+|.||+++++|||+
T Consensus         2 ~~~~G~di~fl~t~~~~~~a~~w~mv~sCfG~~F~L~~Ek~~l~~~~~~y~A~~~~iG~~~eA~nf~Y~Lel~~n~RkL~   81 (127)
T cd03829           2 TTLQGEDIVFLATDINLPGATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQLIGTEKQAENFTYRLELNGNRRRLT   81 (127)
T ss_pred             ccccCccEEEEecCCCCccceeeeehhhhcCceEEEEEehhhhcCCcHHHHHHHHHHcCHhHHhcceEEEEEcCCCcEEE
Confidence            3578999999999999999999999999999999999999997 778899999999999999999999999999999999


Q ss_pred             EEecccchhhhhhhhhcCCCEEEEehhhHhhhhcCCceEEEEEEeC
Q psy17006        401 WEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT  446 (446)
Q Consensus       401 ~~~~~~s~~~~~~~~~~~~dcl~i~~~~~~~f~~~~~l~~~v~i~~  446 (446)
                      |+++||||+|++.+++++.|||+|+.++|++|++||+|.++|+|+.
T Consensus        82 we~~PRSIrds~~~~~~~~D~Lii~~~~A~~Fs~~g~l~l~v~It~  127 (127)
T cd03829          82 WEATPRSIREGHASVIDNSDCLVFDTSIAQLFSENGNLGINVTISG  127 (127)
T ss_pred             eecCCccHHHhhHHHhhcCcceEEechHhhhccCCCccEEEEEecC
Confidence            9999999999999999999999999999999999999999999974

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi

>KOG3002|consensus

Probab=99.96  E-value=3.8e-30  Score=250.11  Aligned_cols=188  Identities=46%  Similarity=0.884  Sum_probs=172.9

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccC-CCCCCCCCCCCccccchHHHHHhhhccccccccCCCCeeeecC
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-LSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLH  109 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-~~~CP~Cr~~~~~~~~~~~e~~~~~l~v~C~~~~~GC~~~~~~  109 (446)
                      ..+.+.|.||||...+.+|++||.+||+.|++|..+ ...||.||.+++.+|++++|++++++.|+|||...||+|+++|
T Consensus        43 ~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~~Y  122 (299)
T KOG3002|consen   43 LLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSFPY  122 (299)
T ss_pred             ccchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceeecc
Confidence            345688999999999999999999999999999955 5799999999999999999999999999999999999999999


Q ss_pred             CChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCCC-cceecCccEEEEeeccCcccccceEEEee-eccceE
Q psy17006        110 TEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKT-ITTLQGEDIVFLATDINLAGAVDWVMMQS-CFGHHF  187 (446)
Q Consensus       110 ~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~-~~~c~~c~~~f~~~~~~~~~~~~~~~~~~-c~~~~f  187 (446)
                      .+..+||+.|.|++..||.++..|+|.|..++|..|+...|+. +.+..+-++.+.++++++.++.+|++.++ |++++|
T Consensus       123 ~~~~~HE~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (299)
T KOG3002|consen  123 GEKSKHEKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATWTLKTSVCFGREF  202 (299)
T ss_pred             ccccccccccccCCcCCCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchhheeeeecCcEEE
Confidence            9999999999999999999988999999999999999999985 77888889999999999999999987776 999999


Q ss_pred             EEEEEeeecc-cchhhHHHHHHhcCcccccce
Q psy17006        188 MLVLEKQEID-GRQHFFAIVQLIGSRKQAEHF  218 (446)
Q Consensus       188 ~~~~~k~~~~-~~~~~~~~~q~~g~~~~~~~~  218 (446)
                      +++++++... ....|+.+.+.+|+.+++..+
T Consensus       203 ~~~~~~q~~~~~~~~y~tv~~i~~~~~e~~~f  234 (299)
T KOG3002|consen  203 GLLFEVQCFREPHGVYVTVNRIAPSAPEAGEF  234 (299)
T ss_pred             eeeeeehhhcCCCceEEEeehhccCCCccccc
Confidence            9999998864 347888888888998888664

>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila

Probab=99.83  E-value=2.1e-21  Score=180.97  Aligned_cols=139  Identities=43%  Similarity=0.888  Sum_probs=100.7

Q ss_pred             ccchHHHHHhhhccccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceecCc
Q psy17006         80 IRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGE  159 (446)
Q Consensus        80 ~~~~~~e~~~~~l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~~c  159 (446)
                      +||++||+++.++++||+|+..||++.+++.++.+||++|+|+|+.||.++.+|+|.|..++|.+|+...|...+.-...
T Consensus         1 iR~~alE~v~~~~~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~   80 (198)
T PF03145_consen    1 IRNRALEKVAESIKFPCKNAKYGCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHLRDKHSWNVTDNGT   80 (198)
T ss_dssp             --------------EE-CCGGGT---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHHHHHTTTSEEEESS
T ss_pred             CCcHHHHHHHhhceecCCCCCCCCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHHHHHCCCccccCcc
Confidence            58999999999999999999999999999999999999999999999997779999999999999999999876655544


Q ss_pred             -cEEEEeeccCcccccceEEEe-eeccceEEEEEEeeecccchhhHHHHHHhcCcccccce
Q psy17006        160 -DIVFLATDINLAGAVDWVMMQ-SCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHF  218 (446)
Q Consensus       160 -~~~f~~~~~~~~~~~~~~~~~-~c~~~~f~~~~~k~~~~~~~~~~~~~q~~g~~~~~~~~  218 (446)
                       ...|...+.+.++..+|++++ .|+|++|++++++.+..+...|++.+|++|++.++..+
T Consensus        81 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~v~~~~v~~~G~~~~a~~f  141 (198)
T PF03145_consen   81 FSISFLHSDINSVESPDWVLVQFSCFGKLFLLYVQKFELEGNAVYFAVVCYIGPAEEASNF  141 (198)
T ss_dssp             -EEEEEECTTT-SSSEEEEEEE-EETTEEEEEEEEEEEEETEEEEEEEEEESS-HHHHTTE
T ss_pred             ceEEEeeecccccCCceEEEeecccCCccEEEEEEEEccCCceEEEEEEEEccCchhhhce
Confidence             567888888877888999998 99999999999888766788888899999999998764

The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.

>KOG0297|consensus

Probab=99.47  E-value=7.1e-14  Score=142.75  Aligned_cols=126  Identities=22%  Similarity=0.448  Sum_probs=110.4

Q ss_pred             cCCCCceecccccCcCcCcccc-ccccceeccCcccCC----CCCCCCCCCCccc----cchHHHHHhhhccccccccCC
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQ-CQSGHLVCSNCRPKL----SCCSTCRGPLGNI----RNLAMEKVAETVTFPCRYQMN  101 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~q-C~~GH~~C~~C~~~~----~~CP~Cr~~~~~~----~~~~~e~~~~~l~v~C~~~~~  101 (446)
                      ..+++++.|++|..++.+|+ | ..|||.||..|+...    ..||.|+..+...    ..+++.+++.++.+.|++...
T Consensus        16 ~~~~~~l~C~~C~~vl~~p~-~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~   94 (391)
T KOG0297|consen   16 RPLDENLLCPICMSVLRDPV-QTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASR   94 (391)
T ss_pred             CCCcccccCccccccccCCC-CCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccccccCCC
Confidence            44889999999999999998 5 367999999999875    5899999887642    368889999999999999999


Q ss_pred             CCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCC-CcceecCccEE
Q psy17006        102 GCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHK-TITTLQGEDIV  162 (446)
Q Consensus       102 GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~-~~~~c~~c~~~  162 (446)
                      ||+|.+++..++.|+..|  .+++||+   +|+..+.++++.+|++..+. +...|..|...
T Consensus        95 GC~~~~~l~~~~~Hl~~c--~~~~C~~---~C~~~~~~~d~~~hl~~~C~~~~~~c~~~~~~  151 (391)
T KOG0297|consen   95 GCRADLELEALQGHLSTC--DPLKCPH---RCGVQVPRDDLEDHLEAECPRRSLKCSLCQSD  151 (391)
T ss_pred             CccccccHHHHHhHhccC--CcccCcc---ccccccchHHHHHHHhcccccccccchhhcCc
Confidence            999999999999999999  9999998   59999999999999987775 66777777543

>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

Probab=99.43  E-value=1.1e-13  Score=114.83  Aligned_cols=67  Identities=85%  Similarity=1.348  Sum_probs=62.9

Q ss_pred             ceecCccEEEEeeccCcccccceEEEeeeccceEEEEEEeeec-ccchhhHHHHHHhcCcccccceee
Q psy17006        154 TTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLIGSRKQAEHFTY  220 (446)
Q Consensus       154 ~~c~~c~~~f~~~~~~~~~~~~~~~~~~c~~~~f~~~~~k~~~-~~~~~~~~~~q~~g~~~~~~~~~~  220 (446)
                      ++.+||+..|+++|++++++.+|+|+|+|||+||+|++||+++ ++.|+||+++|+||+.++|+++..
T Consensus         2 ~~~~G~di~fl~t~~~~~~a~~w~mv~sCfG~~F~L~~Ek~~l~~~~~~y~A~~~~iG~~~eA~nf~Y   69 (127)
T cd03829           2 TTLQGEDIVFLATDINLPGATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQLIGTEKQAENFTY   69 (127)
T ss_pred             ccccCccEEEEecCCCCccceeeeehhhhcCceEEEEEehhhhcCCcHHHHHHHHHHcCHhHHhcceE
Confidence            5678999999999999999999999999999999999999999 899999999999999999988643

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.96  E-value=1.5e-10  Score=121.48  Aligned_cols=149  Identities=21%  Similarity=0.347  Sum_probs=114.1

Q ss_pred             hccccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceecCccEEEEeeccCc
Q psy17006         91 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINL  170 (446)
Q Consensus        91 ~l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~~c~~~f~~~~~~~  170 (446)
                      .-.+.|+|    |.|.++...+..|+..|.|..+.||+.  +|+....++++.+|.        .|+.|+..|...+   
T Consensus       405 ~~~V~C~N----C~~~i~l~~l~lHe~~C~r~~V~Cp~~--~Cg~v~~r~el~~H~--------~C~~Cgk~f~~s~---  467 (567)
T PLN03086        405 VDTVECRN----CKHYIPSRSIALHEAYCSRHNVVCPHD--GCGIVLRVEEAKNHV--------HCEKCGQAFQQGE---  467 (567)
T ss_pred             CCeEECCC----CCCccchhHHHHHHhhCCCcceeCCcc--cccceeeccccccCc--------cCCCCCCccchHH---
Confidence            34678998    999999999999999999999999974  799999999999996        4777865442100   


Q ss_pred             ccccceEEEeeeccceEEEEEEeeecccchhhHHHHHHhcCcccccceeeeccCcccccCcccCCCCCCCCCCCCCc-cc
Q psy17006        171 AGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGN-IR  249 (446)
Q Consensus       171 ~~~~~~~~~~~c~~~~f~~~~~k~~~~~~~~~~~~~q~~g~~~~~~~~~~C~~gh~~C~~C~~~~~~Cp~Cr~~~~~-~r  249 (446)
                                                                 ..+|...|           .....|| |...+.. ..
T Consensus       468 -------------------------------------------LekH~~~~-----------Hkpv~Cp-Cg~~~~R~~L  492 (567)
T PLN03086        468 -------------------------------------------MEKHMKVF-----------HEPLQCP-CGVVLEKEQM  492 (567)
T ss_pred             -------------------------------------------HHHHHHhc-----------CCCccCC-CCCCcchhHH
Confidence                                                       01222222           1234566 6543321 11


Q ss_pred             cHHHHHHHhhcccCcccCCCCCeEeecCC-----------CchhHHhhCCCCCccCCCCCCCcccccChhHHHHHhhhcc
Q psy17006        250 NLAMEKVAETVTFPCRYQMNGCNVVLLHT-----------EKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH  318 (446)
Q Consensus       250 ~~~~e~~c~~~~~~C~~~~~GC~~~~~~~-----------~l~~He~~C~~~~~~Cp~~~~~C~~~g~~~~l~~H~~~~H  318 (446)
                      ..|+...|+.-++.|+|    |...++++           .|..|+..|.-+++.|.    .|+-.....+|..|+..-|
T Consensus       493 ~~H~~thCp~Kpi~C~f----C~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~----~Cgk~Vrlrdm~~H~~~~h  564 (567)
T PLN03086        493 VQHQASTCPLRLITCRF----CGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCD----SCGRSVMLKEMDIHQIAVH  564 (567)
T ss_pred             HhhhhccCCCCceeCCC----CCCccccCccccchhhhhhhHHHHHHhcCCcceEcc----ccCCeeeehhHHHHHHHhh
Confidence            24666789999999998    99888644           79999999999999996    5999999999999999888


Q ss_pred             C
Q psy17006        319 K  319 (446)
Q Consensus       319 ~  319 (446)
                      .
T Consensus       565 ~  565 (567)
T PLN03086        565 Q  565 (567)
T ss_pred             c
Confidence            5

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=98.54  E-value=2.8e-08  Score=74.18  Aligned_cols=56  Identities=25%  Similarity=0.496  Sum_probs=42.0

Q ss_pred             HHhhcccCcccCCCCCeEeecCCCchhHHh-hCCCCCccCCCCCCCcccccChhHHHHH
Q psy17006        256 VAETVTFPCRYQMNGCNVVLLHTEKPEHED-ACEYRPYHCPCPGASCKWSGALDQVMGH  313 (446)
Q Consensus       256 ~c~~~~~~C~~~~~GC~~~~~~~~l~~He~-~C~~~~~~Cp~~~~~C~~~g~~~~l~~H  313 (446)
                      .|+...++||+  .||...++|.+|..|++ +|+++++.|+|...||++.+.+.+|.+|
T Consensus         4 ~C~~~~v~C~~--~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    4 ECPFRPVPCPN--GCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             TSTTSEEE-TT----S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             cCCCCEeeCCC--CCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            38889999998  36667899999999998 9999999999999999999999999988

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.38  E-value=6.6e-08  Score=71.63  Aligned_cols=46  Identities=33%  Similarity=0.800  Sum_probs=26.2

Q ss_pred             CCCCceecccccCcCcCccccccccceeccCcccCC--CCCCCCCCCC
Q psy17006         32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPL   77 (446)
Q Consensus        32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~   77 (446)
                      .|++.+.|++|.++|+.||..-.|.|.||+.|+..-  ..||+|..|.
T Consensus         3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Pa   50 (65)
T PF14835_consen    3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPA   50 (65)
T ss_dssp             HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-
T ss_pred             HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChH
Confidence            356789999999999999854457999999999874  6899999976

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=98.15  E-value=1.1e-06  Score=65.61  Aligned_cols=53  Identities=26%  Similarity=0.527  Sum_probs=37.3

Q ss_pred             hccccccccCCCCeeeecCCChhhHhh-hCCCccccCCCCCCCCccccChhHHHHH
Q psy17006         91 TVTFPCRYQMNGCNVVLLHTEKPEHED-ACEYRPYHCPCPGASCKWSGALDQVMGH  145 (446)
Q Consensus        91 ~l~v~C~~~~~GC~~~~~~~~~~~H~~-~C~~~~v~Cp~~~~~C~~~~~~~~l~~H  145 (446)
                      ...|.|||.  ||...+...++.+|++ +|++++++|++...||++++.+.+|.+|
T Consensus         7 ~~~v~C~~~--cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    7 FRPVPCPNG--CCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             TSEEE-TT----S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             CCEeeCCCC--CcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            357889873  6778899999999997 9999999999866789999999999887

>smart00504 Ubox Modified RING finger domain

Probab=98.09  E-value=1.9e-06  Score=64.80  Aligned_cols=55  Identities=24%  Similarity=0.381  Sum_probs=45.7

Q ss_pred             ceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhh
Q psy17006         36 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAET   91 (446)
Q Consensus        36 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~   91 (446)
                      .|.||||.+++.+|+ .-.+||+||..|+.+.    ..||.|++++..   ++|..+++.+++
T Consensus         1 ~~~Cpi~~~~~~~Pv-~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEVMKDPV-ILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCcCCCCE-ECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence            378999999999998 4467999999999864    589999998852   578888887764

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.08  E-value=7e-07  Score=61.68  Aligned_cols=34  Identities=35%  Similarity=1.037  Sum_probs=25.2

Q ss_pred             cccccCcCcCccccccccceeccCcccCC--------CCCCCC
Q psy17006         39 CPVCFDYVLPPIIQCQSGHLVCSNCRPKL--------SCCSTC   73 (446)
Q Consensus        39 C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--------~~CP~C   73 (446)
                      ||||.++|.+|+ +-.|||.||.+|+.+.        ..||.|
T Consensus         1 CpiC~~~~~~Pv-~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPV-SLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEE-E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCcc-ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999998 4456999999999863        257776

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.07  E-value=2e-06  Score=87.46  Aligned_cols=64  Identities=22%  Similarity=0.487  Sum_probs=52.2

Q ss_pred             CccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006         29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVT   93 (446)
Q Consensus        29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~   93 (446)
                      .-+++++.+.|+||.+++..|+ ...|||.||..|+...    ..||.|+.++..   .+|.++++++..++
T Consensus        19 ~l~~Le~~l~C~IC~d~~~~Pv-itpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~   89 (397)
T TIGR00599        19 SLYPLDTSLRCHICKDFFDVPV-LTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFK   89 (397)
T ss_pred             cccccccccCCCcCchhhhCcc-CCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHH
Confidence            4578899999999999999998 4567999999999852    579999998753   36788888776554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0320|consensus

Probab=98.05  E-value=1.8e-06  Score=76.82  Aligned_cols=47  Identities=30%  Similarity=0.812  Sum_probs=37.8

Q ss_pred             CCCCceecccccCcCcCcc-ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         32 DLASLFECPVCFDYVLPPI-IQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        32 ~l~~~l~C~iC~~~l~~Pv-~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      .-...+.||||++-+..-+ +...|||+||+.|++.+    ..||+|++.++
T Consensus       127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt  178 (187)
T KOG0320|consen  127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT  178 (187)
T ss_pred             ccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence            3346799999999997533 35678999999999874    58999998775

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.02  E-value=8.5e-06  Score=86.08  Aligned_cols=118  Identities=21%  Similarity=0.345  Sum_probs=85.4

Q ss_pred             CccccCCCCCCCCccccChhHHHHHHhhcCCCcceec--CccEEEEeeccCcccccceEEEeeeccceEEEEEEeeeccc
Q psy17006        121 YRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQ--GEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDG  198 (446)
Q Consensus       121 ~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~--~c~~~f~~~~~~~~~~~~~~~~~~c~~~~f~~~~~k~~~~~  198 (446)
                      -..+.|+|    |.|.++...|..|+..|-...+.|.  +|+..|...++.                             
T Consensus       405 ~~~V~C~N----C~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~-----------------------------  451 (567)
T PLN03086        405 VDTVECRN----CKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAK-----------------------------  451 (567)
T ss_pred             CCeEECCC----CCCccchhHHHHHHhhCCCcceeCCcccccceeeccccc-----------------------------
Confidence            44678996    9999999999999999888788887  587665421111                             


Q ss_pred             chhhHHHHHHhcCcccccceeeeccCcccccCcccCCCCCCCCCCCCCccc-cHHHHHHHhhcccCcccCCCCCeEeecC
Q psy17006        199 RQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGNIR-NLAMEKVAETVTFPCRYQMNGCNVVLLH  277 (446)
Q Consensus       199 ~~~~~~~~q~~g~~~~~~~~~~C~~gh~~C~~C~~~~~~Cp~Cr~~~~~~r-~~~~e~~c~~~~~~C~~~~~GC~~~~~~  277 (446)
                                               .|.          .|+.|...+.... ..|+ ..+ ..++.|+     |+..+.+
T Consensus       452 -------------------------~H~----------~C~~Cgk~f~~s~LekH~-~~~-Hkpv~Cp-----Cg~~~~R  489 (567)
T PLN03086        452 -------------------------NHV----------HCEKCGQAFQQGEMEKHM-KVF-HEPLQCP-----CGVVLEK  489 (567)
T ss_pred             -------------------------cCc----------cCCCCCCccchHHHHHHH-Hhc-CCCccCC-----CCCCcch
Confidence                                     122          5667766665321 1233 334 4778897     8888899


Q ss_pred             CCchhHHh-hCCCCCccCCCCCCCcccccC-----------hhHHHHHhhhc
Q psy17006        278 TEKPEHED-ACEYRPYHCPCPGASCKWSGA-----------LDQVMGHLNQS  317 (446)
Q Consensus       278 ~~l~~He~-~C~~~~~~Cp~~~~~C~~~g~-----------~~~l~~H~~~~  317 (446)
                      .+|..|.. .|+.+++.|+|    |.....           ...|..|+...
T Consensus       490 ~~L~~H~~thCp~Kpi~C~f----C~~~v~~g~~~~d~~d~~s~Lt~HE~~C  537 (567)
T PLN03086        490 EQMVQHQASTCPLRLITCRF----CGDMVQAGGSAMDVRDRLRGMSEHESIC  537 (567)
T ss_pred             hHHHhhhhccCCCCceeCCC----CCCccccCccccchhhhhhhHHHHHHhc
Confidence            99999975 89999999998    877764           34788998774

>KOG0287|consensus

Probab=98.00  E-value=8e-07  Score=86.02  Aligned_cols=65  Identities=26%  Similarity=0.637  Sum_probs=53.3

Q ss_pred             CccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhccc
Q psy17006         29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVTF   94 (446)
Q Consensus        29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~v   94 (446)
                      .-..|++.|.|.||+++|..|+ ...|||.||+-||.+.    +.||+|+.++..   ..|+.++.++.++.+
T Consensus        16 slk~lD~lLRC~IC~eyf~ip~-itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   16 SLKTLDDLLRCGICFEYFNIPM-ITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF   87 (442)
T ss_pred             hhhhhHHHHHHhHHHHHhcCce-eccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence            4478899999999999999998 4567999999999873    799999998863   246777887777654

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=97.99  E-value=1.8e-06  Score=78.74  Aligned_cols=46  Identities=33%  Similarity=0.777  Sum_probs=38.2

Q ss_pred             CCCCceecccccCcCcCccccccccceeccCcccCC--------------------CCCCCCCCCCc
Q psy17006         32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--------------------SCCSTCRGPLG   78 (446)
Q Consensus        32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--------------------~~CP~Cr~~~~   78 (446)
                      ++.+.++|+||.+.+.+|+ ...|||.||..|+.++                    ..||.||.++.
T Consensus        14 ~~~~~~~CpICld~~~dPV-vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPV-VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             cCCCccCCccCCCcCCCcE-EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            4456799999999999998 4567999999999642                    37999999885

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=97.96  E-value=1.5e-06  Score=58.99  Aligned_cols=35  Identities=34%  Similarity=0.991  Sum_probs=27.9

Q ss_pred             cccccCcCcCccccccccceeccCcccCC----CCCCCC
Q psy17006         39 CPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTC   73 (446)
Q Consensus        39 C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~C   73 (446)
                      |+||.+.+.+|++...|||.||..|+.+.    .+||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999999655667999999999864    578876

>KOG0823|consensus

Probab=97.75  E-value=1.6e-05  Score=73.88  Aligned_cols=46  Identities=26%  Similarity=0.769  Sum_probs=38.9

Q ss_pred             CCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006         32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG   78 (446)
Q Consensus        32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~   78 (446)
                      .-...|.|.||++..++||+. .|||+||=.|+-++       ..||+|+..++
T Consensus        43 ~~~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   43 RDGGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCCCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            445789999999999999954 47999999999875       36899999775

>KOG0297|consensus

Probab=97.75  E-value=3.3e-05  Score=79.36  Aligned_cols=94  Identities=23%  Similarity=0.505  Sum_probs=80.7

Q ss_pred             eccCcccccCcccCC----CCCCCCCCCCCcccc----HHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCc
Q psy17006        221 CQSGHLVCSNCRPKL----SCCSTCRGPLGNIRN----LAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPY  292 (446)
Q Consensus       221 C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~~r~----~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~  292 (446)
                      =..||.+|..|....    ..||.|+.++.....    ..+-++..++++.|.+...||.+.+....+..|+..|  .++
T Consensus        38 ~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~GC~~~~~l~~~~~Hl~~c--~~~  115 (391)
T KOG0297|consen   38 TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASRGCRADLELEALQGHLSTC--DPL  115 (391)
T ss_pred             CCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccccccCCCCccccccHHHHHhHhccC--Ccc
Confidence            367999999999873    489999988765443    4455778899999999999999999999999999999  889


Q ss_pred             cCCCCCCCcccccChhHHHHHhhhccC
Q psy17006        293 HCPCPGASCKWSGALDQVMGHLNQSHK  319 (446)
Q Consensus       293 ~Cp~~~~~C~~~g~~~~l~~H~~~~H~  319 (446)
                      +||..   |..++.+.++.+|++....
T Consensus       116 ~C~~~---C~~~~~~~d~~~hl~~~C~  139 (391)
T KOG0297|consen  116 KCPHR---CGVQVPRDDLEDHLEAECP  139 (391)
T ss_pred             cCccc---cccccchHHHHHHHhcccc
Confidence            99964   9999999999999865554

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=97.71  E-value=6.7e-06  Score=59.01  Aligned_cols=43  Identities=35%  Similarity=0.895  Sum_probs=34.4

Q ss_pred             CceecccccCcCcCccccccccce-eccCcccCC----CCCCCCCCCCc
Q psy17006         35 SLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      ++..|+||.+...++++ -.|||. +|..|+.++    ..||+||+++.
T Consensus         1 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVL-LPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEE-ETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEE-eCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            35789999999999873 356999 999999886    79999999875

...

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.68  E-value=7.9e-06  Score=77.71  Aligned_cols=118  Identities=20%  Similarity=0.392  Sum_probs=78.2

Q ss_pred             CCccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCccc--c-chHHH-----------HHh
Q psy17006         28 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGNI--R-NLAME-----------KVA   89 (446)
Q Consensus        28 ~~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~~--~-~~~~e-----------~~~   89 (446)
                      +.-..|+..+.|-||...+..|+ ...|||.||+-||...    +.||+||.+....  | +..++           -+.
T Consensus        17 PSL~~LDs~lrC~IC~~~i~ip~-~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~~l~   95 (391)
T COG5432          17 PSLKGLDSMLRCRICDCRISIPC-ETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNRDLLR   95 (391)
T ss_pred             cchhcchhHHHhhhhhheeecce-ecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhccHHHH
Confidence            34567888999999999999997 5667999999999873    7899999865311  1 11111           123


Q ss_pred             hhcccccc-----ccCCCCeeeecCCChh--------hHh------------------hhCCCccccCCCCCCCCccccC
Q psy17006         90 ETVTFPCR-----YQMNGCNVVLLHTEKP--------EHE------------------DACEYRPYHCPCPGASCKWSGA  138 (446)
Q Consensus        90 ~~l~v~C~-----~~~~GC~~~~~~~~~~--------~H~------------------~~C~~~~v~Cp~~~~~C~~~~~  138 (446)
                      ..|++.|+     +.+.-|+|.....+-.        +-+                  +.=.-..+.||    .|.--.+
T Consensus        96 ~~L~~~~~~p~p~~ee~p~~~E~v~~~dS~S~~~~~eD~~~~~sS~~~iAKkt~~D~~KrK~E~l~~CP----~C~~~~P  171 (391)
T COG5432          96 KVLESLCRLPRPIKEERPCRWETVIAQDSASGDEEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCP----ACSNLVP  171 (391)
T ss_pred             HHHhcccCCCCchhhcCCCchhheeccccccccchhhhhhhhccChHHHHhhhhhHHHHhHHHhhhcCc----hhhccCc
Confidence            44566663     3456777754432110        000                  00002347898    5999999


Q ss_pred             hhHHHHHHhhcC
Q psy17006        139 LDQVMGHLNQSH  150 (446)
Q Consensus       139 ~~~l~~H~~~~h  150 (446)
                      .+++..|+..|=
T Consensus       172 ~~~i~~HLD~CL  183 (391)
T COG5432         172 HNQINQHLDSCL  183 (391)
T ss_pred             hHHHHHHHHHHh
Confidence            999999999874

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.62  E-value=2.1e-05  Score=61.15  Aligned_cols=58  Identities=24%  Similarity=0.342  Sum_probs=43.2

Q ss_pred             CCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhc
Q psy17006         34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETV   92 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l   92 (446)
                      .+.|.|||++++|.+|| .-.+||+|+.+++.+.     ..||.+++++..   .+|..+++.|..+
T Consensus         2 P~~f~CpIt~~lM~dPV-i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~   67 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPV-ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEW   67 (73)
T ss_dssp             SGGGB-TTTSSB-SSEE-EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHH
T ss_pred             CcccCCcCcCcHhhCce-eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHH
Confidence            46799999999999998 4567999999999863     579999998863   5889999888765

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.50  E-value=2.5e-05  Score=54.46  Aligned_cols=38  Identities=32%  Similarity=0.774  Sum_probs=29.8

Q ss_pred             ecccccCcC--cCccccccccceeccCcccCCC----CCCCCCC
Q psy17006         38 ECPVCFDYV--LPPIIQCQSGHLVCSNCRPKLS----CCSTCRG   75 (446)
Q Consensus        38 ~C~iC~~~l--~~Pv~qC~~GH~~C~~C~~~~~----~CP~Cr~   75 (446)
                      +|++|.+.+  ..+.+...|||+||..|+.++.    .||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            599999999  2232345669999999999865    8999985

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.36  E-value=2.7e-05  Score=54.22  Aligned_cols=37  Identities=27%  Similarity=0.843  Sum_probs=29.2

Q ss_pred             ecccccCcCc--CccccccccceeccCcccCC----CCCCCCC
Q psy17006         38 ECPVCFDYVL--PPIIQCQSGHLVCSNCRPKL----SCCSTCR   74 (446)
Q Consensus        38 ~C~iC~~~l~--~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr   74 (446)
                      +|+||.+.+.  +.++...|||.||.+|+.++    ..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            5999999995  34445668999999999874    6899997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.34  E-value=5.8e-05  Score=71.75  Aligned_cols=46  Identities=26%  Similarity=0.629  Sum_probs=35.8

Q ss_pred             CCceecccccCcCcCcc-------ccccccceeccCcccCC----CCCCCCCCCCcc
Q psy17006         34 ASLFECPVCFDYVLPPI-------IQCQSGHLVCSNCRPKL----SCCSTCRGPLGN   79 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~Pv-------~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~   79 (446)
                      .+..+|+||.+.+.++.       ....|||.||..|+.++    ..||+||.++..
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            45689999999876531       13456999999999764    689999998864

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.28  E-value=6.3e-05  Score=51.39  Aligned_cols=35  Identities=34%  Similarity=0.920  Sum_probs=28.6

Q ss_pred             cccccCcCcCccccccccceeccCcccCC------CCCCCC
Q psy17006         39 CPVCFDYVLPPIIQCQSGHLVCSNCRPKL------SCCSTC   73 (446)
Q Consensus        39 C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~------~~CP~C   73 (446)
                      |+||.+++.+|+..-.|||.||..|+.++      ..||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999999999744456999999999763      468876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.10  E-value=0.00012  Score=50.14  Aligned_cols=40  Identities=35%  Similarity=0.999  Sum_probs=31.4

Q ss_pred             ecccccCcCcCccccccccceeccCcccC-----CCCCCCCCCCC
Q psy17006         38 ECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCSTCRGPL   77 (446)
Q Consensus        38 ~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-----~~~CP~Cr~~~   77 (446)
                      .|+||.+.+..|+..-.|||.||..|+..     ...||.|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            49999999977763334799999999974     25799998753

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.01  E-value=0.00034  Score=68.61  Aligned_cols=55  Identities=29%  Similarity=0.671  Sum_probs=39.4

Q ss_pred             ceecccccC--cCcCcc--ccccccceeccCcccCC-----CCCCCCCCCCcc-------ccchHHHHHhh
Q psy17006         36 LFECPVCFD--YVLPPI--IQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN-------IRNLAMEKVAE   90 (446)
Q Consensus        36 ~l~C~iC~~--~l~~Pv--~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~-------~~~~~~e~~~~   90 (446)
                      ...||+|..  ++.+-+  +.-.|||.||.+|+..+     ..||.|+.++..       +.+.++++.+.
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~   73 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD   73 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence            478999998  444432  22257999999999873     479999998752       35677777654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0311|consensus

Probab=96.94  E-value=3.9e-05  Score=75.25  Aligned_cols=65  Identities=18%  Similarity=0.373  Sum_probs=50.5

Q ss_pred             CCccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCccc----cchHHHHHhhhc
Q psy17006         28 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGNI----RNLAMEKVAETV   92 (446)
Q Consensus        28 ~~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~~----~~~~~e~~~~~l   92 (446)
                      .....+...+.||||+++|...+..=.|+|+||..|+-+.     ..||+||+.+.+.    .+..+..++..+
T Consensus        35 ~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   35 VDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI  108 (381)
T ss_pred             ecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence            4566778899999999999988744356999999999864     5899999987643    355666666654

>KOG2164|consensus

Probab=96.90  E-value=0.00026  Score=72.90  Aligned_cols=67  Identities=21%  Similarity=0.539  Sum_probs=44.0

Q ss_pred             cccccccCCCCCCCCCCCC-ccCCCCceecccccCcCcCccccccccceeccCcccC---------CCCCCCCCCCCc
Q psy17006         11 GIVGSRRHEPTHPSMCPGT-STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK---------LSCCSTCRGPLG   78 (446)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~-~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~---------~~~CP~Cr~~~~   78 (446)
                      |.-...+.+||.|...... ..-....+.||||+....-|+ ...|||+||..|+-.         ...||+|+..+.
T Consensus       160 gd~~~qn~dpD~p~~~e~i~qv~~~t~~~CPICL~~~~~p~-~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~  236 (513)
T KOG2164|consen  160 GDYVLQNTDPDAPVDWEDIFQVYGSTDMQCPICLEPPSVPV-RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT  236 (513)
T ss_pred             cchhhhccCCccccchHHhhhhhcCcCCcCCcccCCCCccc-ccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence            3333445666665422100 111122688999999998886 445799999999865         248999998775

>KOG0317|consensus

Probab=96.85  E-value=0.00031  Score=67.36  Aligned_cols=44  Identities=23%  Similarity=0.627  Sum_probs=37.6

Q ss_pred             CCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      .....|.+|.+...+|- -..|||+||-+|+..+    ..||.||+.+.
T Consensus       237 ~a~~kC~LCLe~~~~pS-aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~  284 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPS-ATPCGHIFCWSCILEWCSEKAECPLCREKFQ  284 (293)
T ss_pred             CCCCceEEEecCCCCCC-cCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence            35589999999999995 5568999999999874    58999999875

>PHA02926 zinc finger-like protein; Provisional

Probab=96.47  E-value=0.00054  Score=63.52  Aligned_cols=46  Identities=24%  Similarity=0.631  Sum_probs=34.8

Q ss_pred             CCCceecccccCcCcCc---------cccccccceeccCcccCC----------CCCCCCCCCCcc
Q psy17006         33 LASLFECPVCFDYVLPP---------IIQCQSGHLVCSNCRPKL----------SCCSTCRGPLGN   79 (446)
Q Consensus        33 l~~~l~C~iC~~~l~~P---------v~qC~~GH~~C~~C~~~~----------~~CP~Cr~~~~~   79 (446)
                      ..+..+|+||.+.+.++         + .-.|+|.||..|+.++          ..||.||..+..
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGI-L~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGL-LDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             ccCCCCCccCccccccccccccccccc-cCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            34568999999987442         2 2256999999999864          239999998764

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=96.26  E-value=0.00068  Score=46.94  Aligned_cols=27  Identities=37%  Similarity=1.077  Sum_probs=16.2

Q ss_pred             cccccCcCcC----ccccccccceeccCcccCC
Q psy17006         39 CPVCFDYVLP----PIIQCQSGHLVCSNCRPKL   67 (446)
Q Consensus        39 C~iC~~~l~~----Pv~qC~~GH~~C~~C~~~~   67 (446)
                      ||||.+ +..    |+.. .|||+||..|++++
T Consensus         1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l   31 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKL   31 (43)
T ss_dssp             -TTT-----TTSS-EEE--SSS-EEEHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHH
Confidence            899999 766    8732 25999999999874

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.0011  Score=63.01  Aligned_cols=44  Identities=25%  Similarity=0.582  Sum_probs=36.2

Q ss_pred             CCceecccccCcCcCccccccccceeccCcccC-C-----CCCCCCCCCCc
Q psy17006         34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-L-----SCCSTCRGPLG   78 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-~-----~~CP~Cr~~~~   78 (446)
                      ...++|+||.+....|. ...|||+||-.|+.. +     ..||.||....
T Consensus       213 ~~d~kC~lC~e~~~~ps-~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPEVPS-CTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccCCcc-cccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            35799999999999997 445799999999876 2     35999998653

>smart00184 RING Ring finger

Probab=95.88  E-value=0.0027  Score=41.63  Aligned_cols=34  Identities=32%  Similarity=0.978  Sum_probs=26.9

Q ss_pred             cccccCcCcCccccccccceeccCcccCC-----CCCCCC
Q psy17006         39 CPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTC   73 (446)
Q Consensus        39 C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~C   73 (446)
                      |+||.+....++ .-.+||.||..|+..+     ..||.|
T Consensus         1 C~iC~~~~~~~~-~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPV-VLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcE-EecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            789999988776 3356999999999743     468876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=95.79  E-value=0.019  Score=50.72  Aligned_cols=28  Identities=25%  Similarity=0.572  Sum_probs=22.8

Q ss_pred             ccccCCCCCCCCccccChhHHHHHHhhcCC
Q psy17006        122 RPYHCPCPGASCKWSGALDQVMGHLNQSHK  151 (446)
Q Consensus       122 ~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~  151 (446)
                      ++-.|+..  +|.+.|...+|.+|.+..|+
T Consensus       106 K~RsC~~e--~C~F~GtY~eLrKHar~~HP  133 (162)
T PF07800_consen  106 KKRSCSQE--SCSFSGTYSELRKHARSEHP  133 (162)
T ss_pred             CCccCccc--ccccccCHHHHHHHHHhhCC
Confidence            33445553  89999999999999999997

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG2177|consensus

Probab=95.49  E-value=0.0029  Score=61.71  Aligned_cols=68  Identities=24%  Similarity=0.524  Sum_probs=50.1

Q ss_pred             CccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc-cccchHHHHHhhhcccccc
Q psy17006         29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG-NIRNLAMEKVAETVTFPCR   97 (446)
Q Consensus        29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~-~~~~~~~e~~~~~l~v~C~   97 (446)
                      ....+.+.+.||||.+.+..|. .=.|||.||..|+..+    ..||.||.+.. ..+|..+.+++..+.....
T Consensus         6 ~~~~~~~~~~C~iC~~~~~~p~-~l~C~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~~   78 (386)
T KOG2177|consen    6 LLEVLQEELTCPICLEYFREPV-LLPCGHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQLRL   78 (386)
T ss_pred             hhhhccccccChhhHHHhhcCc-cccccchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhcCC
Confidence            3466778999999999999995 3345999999999874    48999995221 1266777777766655544

>KOG4159|consensus

Probab=95.42  E-value=0.0032  Score=64.35  Aligned_cols=50  Identities=32%  Similarity=0.739  Sum_probs=42.7

Q ss_pred             CCccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         28 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        28 ~~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      +++..+.+.|.|.||...+.+|+. ..|||.+|..|+.+.    ..||.||.++.
T Consensus        76 s~~~~~~sef~c~vc~~~l~~pv~-tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   76 SGPEEIRSEFECCVCSRALYPPVV-TPCGHSFCLECLDRSLDQETECPLCRDELV  129 (398)
T ss_pred             ccCccccchhhhhhhHhhcCCCcc-ccccccccHHHHHHHhccCCCCcccccccc
Confidence            456777899999999999999984 488999999997653    68999999875

>KOG0978|consensus

Probab=95.36  E-value=0.0034  Score=67.77  Aligned_cols=48  Identities=23%  Similarity=0.647  Sum_probs=39.2

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN   79 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~   79 (446)
                      .+....|.||+|..=..+-| ...|||.||..|+.+.     .+||.|..+|+.
T Consensus       638 k~yK~~LkCs~Cn~R~Kd~v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  638 KEYKELLKCSVCNTRWKDAV-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             HHHHhceeCCCccCchhhHH-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            34568899999997777776 4566999999999863     799999999873

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.04  E-value=0.0089  Score=54.30  Aligned_cols=54  Identities=22%  Similarity=0.450  Sum_probs=40.8

Q ss_pred             eecccccCcCcCccccccccceeccCcccC----CCCCCCCCCCCc-c-ccchHHHHHhhh
Q psy17006         37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCSTCRGPLG-N-IRNLAMEKVAET   91 (446)
Q Consensus        37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~----~~~CP~Cr~~~~-~-~~~~~~e~~~~~   91 (446)
                      |.|.||..-+..|| ...|||.||+.|..+    -+.|-+|.+... . .-...++++++.
T Consensus       197 F~C~iCKkdy~spv-vt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL~~  256 (259)
T COG5152         197 FLCGICKKDYESPV-VTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNK  256 (259)
T ss_pred             eeehhchhhccchh-hhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHHhh
Confidence            78999999999998 455699999999764    368999987543 2 234556777654

>KOG2660|consensus

Probab=93.80  E-value=0.015  Score=57.16  Aligned_cols=63  Identities=21%  Similarity=0.474  Sum_probs=47.9

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccC----CCCCCCCCCCCcc------c-cchHHHHHhhhc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCSTCRGPLGN------I-RNLAMEKVAETV   92 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~----~~~CP~Cr~~~~~------~-~~~~~e~~~~~l   92 (446)
                      -.++.+...|.+|..+|.++-+.-.|=|+||++|+-+    ...||.|...+..      + .|+.++.++..|
T Consensus         9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen    9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            4677888999999999999965445689999999876    3689999986642      2 456666665544

>KOG1813|consensus

Probab=93.78  E-value=0.046  Score=52.92  Aligned_cols=43  Identities=28%  Similarity=0.696  Sum_probs=36.1

Q ss_pred             eecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCccc
Q psy17006         37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGNI   80 (446)
Q Consensus        37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~~   80 (446)
                      +.|-||...+..|| ...|||.||..|..+.    ..|++|.+....+
T Consensus       242 f~c~icr~~f~~pV-vt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  242 FKCFICRKYFYRPV-VTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS  288 (313)
T ss_pred             ccccccccccccch-hhcCCceeehhhhccccccCCcceecccccccc
Confidence            67999999999998 5567999999998753    6899999877543

>KOG4172|consensus

Probab=93.55  E-value=0.0063  Score=43.61  Aligned_cols=40  Identities=35%  Similarity=1.087  Sum_probs=32.0

Q ss_pred             eecccccCcCcCcc-ccccccc-eeccCcccCC-----CCCCCCCCCCc
Q psy17006         37 FECPVCFDYVLPPI-IQCQSGH-LVCSNCRPKL-----SCCSTCRGPLG   78 (446)
Q Consensus        37 l~C~iC~~~l~~Pv-~qC~~GH-~~C~~C~~~~-----~~CP~Cr~~~~   78 (446)
                      -+|-||.+-..+-| |.|  || -.|-.|-.++     ..||+||.++.
T Consensus         8 dECTICye~pvdsVlYtC--GHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTC--GHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHc--chHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            57999999888877 566  99 6788886653     58999999874

>KOG2879|consensus

Probab=93.49  E-value=0.051  Score=52.08  Aligned_cols=48  Identities=27%  Similarity=0.509  Sum_probs=38.1

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC------CCCCCCCCCCc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL------SCCSTCRGPLG   78 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~------~~CP~Cr~~~~   78 (446)
                      +.-....+||+|.+....|...=.|||++|-.|+.+.      -.||.|.++..
T Consensus       234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            4445678999999999999632237999999999874      38999998764

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.47  E-value=0.016  Score=40.94  Aligned_cols=39  Identities=28%  Similarity=0.837  Sum_probs=19.4

Q ss_pred             cccccCcCcC---ccccccccceeccCcccCC-----CCCCCCCCCC
Q psy17006         39 CPVCFDYVLP---PIIQCQSGHLVCSNCRPKL-----SCCSTCRGPL   77 (446)
Q Consensus        39 C~iC~~~l~~---Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~   77 (446)
                      ||+|.+.+-.   -++-|.||..+|..|+.++     ..||.||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            7888888821   2346899999999997653     5899999875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.25  E-value=0.032  Score=43.31  Aligned_cols=36  Identities=28%  Similarity=0.751  Sum_probs=26.8

Q ss_pred             cccccCcCcCc------------cccccccceeccCcccCC----CCCCCCC
Q psy17006         39 CPVCFDYVLPP------------IIQCQSGHLVCSNCRPKL----SCCSTCR   74 (446)
Q Consensus        39 C~iC~~~l~~P------------v~qC~~GH~~C~~C~~~~----~~CP~Cr   74 (446)
                      |+||.+.|.+|            +..-.|||.|-..|+.++    ..||+||
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            99999999443            222246999999999863    5899997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.02  E-value=0.041  Score=53.10  Aligned_cols=55  Identities=22%  Similarity=0.514  Sum_probs=40.3

Q ss_pred             eecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCC---Cc-cccchHHHHHhhh
Q psy17006         37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGP---LG-NIRNLAMEKVAET   91 (446)
Q Consensus        37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~---~~-~~~~~~~e~~~~~   91 (446)
                      |.||.|+.+|+.|+-.=.|||.||..|+...     ..||.|...   +. ..++...++++..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~  338 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEK  338 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHH
Confidence            8999999999999843236999999999863     589999763   22 2455555555543

>KOG0824|consensus

Probab=91.50  E-value=0.086  Score=51.22  Aligned_cols=43  Identities=26%  Similarity=0.557  Sum_probs=35.3

Q ss_pred             ceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc
Q psy17006         36 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN   79 (446)
Q Consensus        36 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~   79 (446)
                      .-+|+||+....-|+ .=.|+|-||--|++-.     ..|++||.++..
T Consensus         7 ~~eC~IC~nt~n~Pv-~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids   54 (324)
T KOG0824|consen    7 KKECLICYNTGNCPV-NLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS   54 (324)
T ss_pred             CCcceeeeccCCcCc-cccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence            357999999999997 2234999999999864     479999999973

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=91.23  E-value=0.043  Score=40.40  Aligned_cols=32  Identities=16%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             CceecccccCcCcCccccccccceeccCcccC
Q psy17006         35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK   66 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~   66 (446)
                      -.+.|||...++.+||..-.|||.|-+..+..
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~   41 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQ   41 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHH
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHH
Confidence            45899999999999985446799998888765

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=91.19  E-value=0.029  Score=39.95  Aligned_cols=29  Identities=34%  Similarity=0.909  Sum_probs=23.4

Q ss_pred             eeeccCcc-cccCcccCC----CCCCCCCCCCCc
Q psy17006        219 TYCQSGHL-VCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       219 ~~C~~gh~-~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      ..=|.||. +|..|..++    ..||.||.++..
T Consensus        16 ~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen   16 VLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             EEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             EEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            33478999 999999986    699999998764

...

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=90.99  E-value=0.21  Score=36.20  Aligned_cols=42  Identities=31%  Similarity=0.747  Sum_probs=31.4

Q ss_pred             CceecccccCcCcC-ccccccccceeccCcccC--CCCCCCCCCCCc
Q psy17006         35 SLFECPVCFDYVLP-PIIQCQSGHLVCSNCRPK--LSCCSTCRGPLG   78 (446)
Q Consensus        35 ~~l~C~iC~~~l~~-Pv~qC~~GH~~C~~C~~~--~~~CP~Cr~~~~   78 (446)
                      ....|-.|...-.. ++..|  ||.+|..|+.-  .+.||.|..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~pC--gH~I~~~~f~~~rYngCPfC~~~~~   50 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPC--GHLICDNCFPGERYNGCPFCGTPFE   50 (55)
T ss_pred             cceeEEEccccccccccccc--cceeeccccChhhccCCCCCCCccc
Confidence            44566777776544 44455  99999999975  478999999885

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=90.93  E-value=0.062  Score=52.77  Aligned_cols=44  Identities=23%  Similarity=0.726  Sum_probs=34.6

Q ss_pred             CCceecccccCcCc---CccccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006         34 ASLFECPVCFDYVL---PPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLG   78 (446)
Q Consensus        34 ~~~l~C~iC~~~l~---~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~   78 (446)
                      ++.+ ||.|-+.+-   ...+-|+||-.+|.-|+..+     .+||.||....
T Consensus        13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence            3445 999999884   23457889999999999864     69999998664

>KOG4275|consensus

Probab=90.63  E-value=0.065  Score=51.69  Aligned_cols=42  Identities=24%  Similarity=0.698  Sum_probs=35.4

Q ss_pred             CceecccccCcCcCccccccccc-eeccCcccCCCCCCCCCCCC
Q psy17006         35 SLFECPVCFDYVLPPIIQCQSGH-LVCSNCRPKLSCCSTCRGPL   77 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~qC~~GH-~~C~~C~~~~~~CP~Cr~~~   77 (446)
                      ....|.||.+..++-++. .||| ..|-.|-+++..||+||+.+
T Consensus       299 ~~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkrm~eCPICRqyi  341 (350)
T KOG4275|consen  299 TRRLCAICMDAPRDCVFL-ECGHMVTCTKCGKRMNECPICRQYI  341 (350)
T ss_pred             HHHHHHHHhcCCcceEEe-ecCcEEeehhhccccccCchHHHHH
Confidence            367899999999998742 3499 78999999999999999854

>KOG2462|consensus

Probab=90.24  E-value=0.69  Score=44.63  Aligned_cols=125  Identities=15%  Similarity=0.219  Sum_probs=71.0

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCCCCCCCCCCCCccccchHHHHHhhhccccccccCCCCeeeecC-
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLH-  109 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~CP~Cr~~~~~~~~~~~e~~~~~l~v~C~~~~~GC~~~~~~-  109 (446)
                      ......+.|+-|...+..--=.-.--..-|..=-.+...|+.|.+.........+-...-.|...|+.    |+..+.. 
T Consensus       125 ~~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~i----CGKaFSRP  200 (279)
T KOG2462|consen  125 AAKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGI----CGKAFSRP  200 (279)
T ss_pred             cccCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCccccc----ccccccch
Confidence            33557788888888775421000000011111113346788888766555555555555566777775    7776663 


Q ss_pred             CChhhHhh-hCCCccccCCCCCCCCcccc-ChhHHHHHHhhcCC-CcceecCccEEE
Q psy17006        110 TEKPEHED-ACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK-TITTLQGEDIVF  163 (446)
Q Consensus       110 ~~~~~H~~-~C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~-~~~~c~~c~~~f  163 (446)
                      ..|+.|.+ -=--+|+.||    .|+... .|.+|..|++..-. ..-.|+-|.+.|
T Consensus       201 WLLQGHiRTHTGEKPF~C~----hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsF  253 (279)
T KOG2462|consen  201 WLLQGHIRTHTGEKPFSCP----HCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSF  253 (279)
T ss_pred             HHhhcccccccCCCCccCC----cccchhcchHHHHHHHHhhcCCccccCcchhhHH
Confidence            45556653 2233567787    477664 67888888875322 345677776544

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=88.83  E-value=0.68  Score=41.04  Aligned_cols=23  Identities=26%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             CCcccccChhHHHHHhhhccCcc
Q psy17006        299 ASCKWSGALDQVMGHLNQSHKTI  321 (446)
Q Consensus       299 ~~C~~~g~~~~l~~H~~~~H~~~  321 (446)
                      .+|+|.|.+.+|.+|.+..|...
T Consensus       113 e~C~F~GtY~eLrKHar~~HP~~  135 (162)
T PF07800_consen  113 ESCSFSGTYSELRKHARSEHPSA  135 (162)
T ss_pred             cccccccCHHHHHHHHHhhCCCC
Confidence            36999999999999999999864

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=88.59  E-value=0.11  Score=35.94  Aligned_cols=23  Identities=39%  Similarity=0.976  Sum_probs=19.3

Q ss_pred             eccCcccccCcccCCC----CCCCCCC
Q psy17006        221 CQSGHLVCSNCRPKLS----CCSTCRG  243 (446)
Q Consensus       221 C~~gh~~C~~C~~~~~----~Cp~Cr~  243 (446)
                      =+.||++|..|..++.    .||.||+
T Consensus        18 ~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen   18 TSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             cccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            3569999999999865    8999974

>KOG4739|consensus

Probab=88.49  E-value=0.24  Score=46.84  Aligned_cols=43  Identities=21%  Similarity=0.685  Sum_probs=33.1

Q ss_pred             ceecccccCcC-cCccccccccceeccCcccCC--CCCCCCCCCCc
Q psy17006         36 LFECPVCFDYV-LPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLG   78 (446)
Q Consensus        36 ~l~C~iC~~~l-~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~   78 (446)
                      -..|..|+.-- .+|.+...|+|+||..|....  ..||+|++++.
T Consensus         3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir   48 (233)
T KOG4739|consen    3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIR   48 (233)
T ss_pred             eEEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceee
Confidence            45788886655 456666777999999999864  38999999864

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=88.36  E-value=0.14  Score=43.94  Aligned_cols=44  Identities=25%  Similarity=0.788  Sum_probs=35.0

Q ss_pred             CceecccccCcCcCccc----cccccceeccCcccCC-------CCCCCCCCCCcc
Q psy17006         35 SLFECPVCFDYVLPPII----QCQSGHLVCSNCRPKL-------SCCSTCRGPLGN   79 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~----qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~~   79 (446)
                      ..++|.||.+.-.++.+    .| ||-..|..|...+       +.||+|+..+.+
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneC-CgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNEC-CGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             CceeccCcccccchhhcCCcccc-cchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            67999999999865432    45 6999999997753       799999998753

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=88.23  E-value=0.14  Score=40.66  Aligned_cols=40  Identities=28%  Similarity=0.507  Sum_probs=28.8

Q ss_pred             cccccCcCcC-ccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006         39 CPVCFDYVLP-PIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG   78 (446)
Q Consensus        39 C~iC~~~l~~-Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~   78 (446)
                      ||.|..+-.+ |+.-..|+|.|=..|+.+.       ..||+||++..
T Consensus        35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            5555555433 6545567999999998762       58999999764

>KOG0320|consensus

Probab=85.71  E-value=0.18  Score=45.50  Aligned_cols=29  Identities=31%  Similarity=0.756  Sum_probs=23.4

Q ss_pred             eeeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006        219 TYCQSGHLVCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       219 ~~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      ..-.+||+||+.|.+..    .+||+|+..+..
T Consensus       147 vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~  179 (187)
T KOG0320|consen  147 VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH  179 (187)
T ss_pred             cccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence            44577999999999873    589999987653

>KOG4265|consensus

Probab=84.26  E-value=0.48  Score=47.28  Aligned_cols=43  Identities=33%  Similarity=0.811  Sum_probs=34.4

Q ss_pred             CCceecccccCcCcCcc-ccccccc-eeccCcccCC----CCCCCCCCCCc
Q psy17006         34 ASLFECPVCFDYVLPPI-IQCQSGH-LVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~Pv-~qC~~GH-~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      ++--+|.||..=.++-+ +-|  -| -.|+.|.+.+    .+||+||+++.
T Consensus       288 ~~gkeCVIClse~rdt~vLPC--RHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPC--RHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             cCCCeeEEEecCCcceEEecc--hhhehhHhHHHHHHHhhcCCCccccchH
Confidence            44578999999998875 345  66 6899998865    58999999986

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=82.61  E-value=1.1  Score=33.68  Aligned_cols=34  Identities=29%  Similarity=0.698  Sum_probs=17.4

Q ss_pred             ccCcccccCcccCC--CCCCCCCCCC--Cccc-cHHHHH
Q psy17006        222 QSGHLVCSNCRPKL--SCCSTCRGPL--GNIR-NLAMEK  255 (446)
Q Consensus       222 ~~gh~~C~~C~~~~--~~Cp~Cr~~~--~~~r-~~~~e~  255 (446)
                      ...|++|+.|...-  ..||.|..|.  +..| |+.+++
T Consensus        25 ~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~   63 (65)
T PF14835_consen   25 GCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDS   63 (65)
T ss_dssp             SSS--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHH
T ss_pred             cCccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhc
Confidence            45799999999874  5899999985  3333 555554

>KOG0802|consensus

Probab=81.80  E-value=0.32  Score=52.43  Aligned_cols=42  Identities=31%  Similarity=0.716  Sum_probs=34.0

Q ss_pred             CCceecccccCcCcC-----c-cccccccceeccCcccCC----CCCCCCCCCC
Q psy17006         34 ASLFECPVCFDYVLP-----P-IIQCQSGHLVCSNCRPKL----SCCSTCRGPL   77 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~-----P-v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~   77 (446)
                      ...-.|+||.+.|..     | .+.|  ||.|+..|+.++    ..||+||..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C--~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPC--GHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeec--ccchHHHHHHHHHHHhCcCCcchhhh
Confidence            456789999999977     4 3455  999999999875    6899999843

>KOG1002|consensus

Probab=81.17  E-value=0.38  Score=50.10  Aligned_cols=48  Identities=23%  Similarity=0.464  Sum_probs=38.5

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC---------CCCCCCCCCCc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL---------SCCSTCRGPLG   78 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~---------~~CP~Cr~~~~   78 (446)
                      ..+-....+|.+|.++..+++ ...|.|.||+-|+...         ..||.|-.+++
T Consensus       530 ~~enk~~~~C~lc~d~aed~i-~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  530 PDENKGEVECGLCHDPAEDYI-ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             CccccCceeecccCChhhhhH-hhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            344456789999999999998 5667999999999642         48999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	446
2a25_A	193	Crystal Structure Of Siah1 Sbd Bound To The Peptide		6e-88
1k2f_A	190	Siah, Seven In Absentia Homolog Length = 190		2e-87
2an6_A	191	Protein-Peptide Complex Length = 191		3e-87

>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide Ekpaavvapittg From Sip Length = 193

Iteration: 1
 Score =  321 bits (822), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 151/191 (79%), Positives = 167/191 (87%), Gaps = 1/191 (0%)
Query: 256 VAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLN 315
           VA +V FPC+Y  +GC + L HTEK +HE+ CE+RPY CPCPGASCKW G+LD VM HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 316 QSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIV 374
             HK+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIV
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120
Query: 375 QLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFAD 434
           QLIG+RKQAE+F YRLELNGHRRRLTWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+
Sbjct: 121 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 180
Query: 435 NKNLGINVTIA 445
           N NLGINVTI+
Sbjct: 181 NGNLGINVTIS 191

>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog Length = 190

Iteration: 1
 Score =  319 bits (817), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 165/188 (87%), Gaps = 1/188 (0%)
Query: 259 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 318
           +V FPC+Y  +GC + L HTEK EHE+ CE+RPY CPCPGASCKW G+LD VM HL   H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 319 KTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLI 377
           K+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLI
Sbjct: 61  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120
Query: 378 GSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKN 437
           G+RKQAE+F YRLELNGHRRRLTWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N N
Sbjct: 121 GTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGN 180
Query: 438 LGINVTIA 445
           LGINVTI+
Sbjct: 181 LGINVTIS 188

>pdb|2AN6|A Chain A, Protein-Peptide Complex Length = 191

Iteration: 1
 Score =  318 bits (816), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 165/188 (87%), Gaps = 1/188 (0%)
Query: 259 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 318
           +V FPC+Y  +GC + L HTEK EHE+ CE+RPY CPCPGASCKW G+LD VM HL   H
Sbjct: 2   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61
Query: 319 KTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLI 377
           K+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLI
Sbjct: 62  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 121
Query: 378 GSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKN 437
           G+RKQAE+F YRLELNGHRRRLTWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N N
Sbjct: 122 GTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGN 181
Query: 438 LGINVTIA 445
           LGINVTI+
Sbjct: 182 LGINVTIS 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	446
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	2e-67
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	9e-42
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-06
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	5e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-04
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-04

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Length = 193

 Score =  213 bits (542), Expect = 2e-67
 Identities = 151/192 (78%), Positives = 167/192 (86%), Gaps = 1/192 (0%)

Query: 256 VAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLN 315
           VA +V FPC+Y  +GC + L HTEK +HE+ CE+RPY CPCPGASCKW G+LD VM HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 316 QSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIV 374
             HK+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIV
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120

Query: 375 QLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFAD 434
           QLIG+RKQAE+F YRLELNGHRRRLTWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+
Sbjct: 121 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 180

Query: 435 NKNLGINVTIAT 446
           N NLGINVTI+ 
Sbjct: 181 NGNLGINVTISM 192

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Length = 193

 Score =  145 bits (367), Expect = 9e-42
 Identities = 104/156 (66%), Positives = 120/156 (76%), Gaps = 5/156 (3%)

Query: 88  VAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLN 147
           VA +V FPC+Y  +GC + L HTEK +HE+ CE+RPY CPCPGASCKW G+LD VM HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 148 QSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIV 206
             HK+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIV
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120

Query: 207 QLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCR 242
           QLIG+RKQAE+F Y      +  + R +L+  +T R
Sbjct: 121 QLIGTRKQAENFAYRLE---LNGHRR-RLTWEATPR 152

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 11/104 (10%)

Query: 32  DLASLFECPVCFDYVLPPIIQCQSGHLVCSNC-----RPKLSCCSTCRGPLGN---IRNL 83
            L S +ECP+C   +   + Q   GH  C  C     R     C      L       + 
Sbjct: 14  PLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 72

Query: 84  AMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCP 127
             ++   ++   C  +  GC   +      +H+  CE+      
Sbjct: 73  FAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALLEHH 114

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 17/114 (14%)

Query: 30  STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNC-----RPKLSCCSTCRGPLGNIRNLA 84
            T L + + C  C + +  P  Q Q GH  CS C           C+ C         ++
Sbjct: 25  GTKLEAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGIS 83

Query: 85  MEKVAETV----------TFPCRYQMNGCN-VVLLHTEKPEHEDACEYRPYHCP 127
           + + +             + P     +GC     L   +  HE  C        
Sbjct: 84  ILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGRCPLMLLEHH 137

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 32  DLASLFECPVCFDYVLPPIIQCQSGHLVCSNC-----RPKLSCCSTCRGPLGNIRNLAME 86
            L S +ECP+C   +   + Q   GH  C  C     R     C      L   +     
Sbjct: 14  PLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 72

Query: 87  KVAETV-TFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGH 145
                + +   +    GC   +      +H+  CE+    CP     C+       +  H
Sbjct: 73  FAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIH 128

Query: 146 LNQ 148
           + +
Sbjct: 129 ILK 131

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 17 RHEPTHPSMCPGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNC-----RPKLSCCS 71
           H   H  M   +   +A +F C +C + +    +      L C +C       + + C 
Sbjct: 3  HHHHHHSHMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCP 62

Query: 72 TCRGPLGN---IRNLAMEKVAETV 92
           CR PL     +     E+V + +
Sbjct: 63 HCRAPLQLRELVNCRWAEEVTQQL 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	446
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	100.0
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.87
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	99.86
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.59
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.56
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.53
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.24
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.83
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.83
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.77
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.72
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.67
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.66
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.66
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.66
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	98.65
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.62
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.6
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.59
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.58
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.57
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.56
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.55
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.48
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.48
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.45
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.45
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.43
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.43
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.42
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.42
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.41
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.41
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.35
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.34
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.33
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.32
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.32
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.31
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.3
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.29
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.25
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.2
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.2
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.2
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.16
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.12
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.12
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.1
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.07
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	98.07
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.04
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.0
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.0
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	97.99
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	97.99
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	97.95
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.89
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.87
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	97.86
2ea5_A	68	Cell growth regulator with ring finger domain prot	97.84
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.76
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.71
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.65
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.5
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.4
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.37
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.27
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.27
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	97.24
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.23
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.11
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	96.98
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.42
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.41
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	96.36
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.13
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	95.3
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	93.18
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	92.76
2ea5_A	68	Cell growth regulator with ring finger domain prot	92.68
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	92.25
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	92.18
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	92.06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	91.94
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	91.55
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	91.39
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	91.08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	90.56
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	90.2
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	90.01
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	90.01
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	89.49
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	89.07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	88.6
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	88.39
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	88.32
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	88.21
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	87.55
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	87.21
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	86.92
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	86.54
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	86.5
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	86.39
1z6u_A	150	NP95-like ring finger protein isoform B; structura	86.35
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	85.94
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	85.71
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	85.66
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	85.64
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	85.62
2ect_A	78	Ring finger protein 126; metal binding protein, st	85.49
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	85.38
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	85.35
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	85.13
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	84.46
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	84.45
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	83.79
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	83.63
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	83.41
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	83.36
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	83.1
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	82.82
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	82.74
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	82.65
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	82.51
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	81.86
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	81.24
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	80.88
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	80.77
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	80.27

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A

Probab=100.00  E-value=2.8e-43  Score=324.67  Aligned_cols=190  Identities=79%  Similarity=1.341  Sum_probs=139.3

Q ss_pred             HhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCccCCCCCCCcccccChhHHHHHhhhccCcceeecCceEEEeeecc
Q psy17006        257 AETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDI  336 (446)
Q Consensus       257 c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g~~~~l~~H~~~~H~~~~~~~~~~~~f~~~~~  336 (446)
                      ++++.+||+|+.+||++.+++.++..||++|+|+|+.||+++.+|+|+|..++|..|+.++|+++.+++|++++|+++++
T Consensus         2 ~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i~f~~~~~   81 (193)
T 2a25_A            2 ANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDI   81 (193)
T ss_dssp             ----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEEEEEEECC
T ss_pred             ccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceEEEEeccc
Confidence            57889999999999999999999999999999999999999899999999999999999999998788999999999999


Q ss_pred             ccccceeEEEEeeecceEEEEEEEeecc-cCceeEEEEEEEeCCcccccccEEEEEEecCCceEEEEecccchhhhhhhh
Q psy17006        337 NLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASA  415 (446)
Q Consensus       337 ~~~~~~~~~~~~~~~g~~Fll~~~~~~~-~~~~~~~~~v~~iG~~~~a~~f~Yel~v~~~~r~l~~~~~~~s~~~~~~~~  415 (446)
                      +++++.+|++++++||++|+|+++++.. .|.+++||+|++|||+++|++|+|+|++.+++|+|+|++.|+|++++++++
T Consensus        82 ~l~~~~~~~~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~~~~~  161 (193)
T 2a25_A           82 NLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATA  161 (193)
T ss_dssp             C----CEEEEEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHHH
T ss_pred             ccccceeEEEEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhccccc
Confidence            9999999999999999999999998764 346678999999999999999999999999999999999999999999999


Q ss_pred             hcCCCEEEEehhhHhhhhcCCceEEEEEEeC
Q psy17006        416 IMNSDCLVFDSNIAQLFADNKNLGINVTIAT  446 (446)
Q Consensus       416 ~~~~dcl~i~~~~~~~f~~~~~l~~~v~i~~  446 (446)
                      ++++|||+||++++++|+++|+|+++|+|++
T Consensus       162 ~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~~  192 (193)
T 2a25_A          162 IMNSDCLVFDTSIAQLFAENGNLGINVTISM  192 (193)
T ss_dssp             HHTTCSEEEEHHHHHHHCSSSEEEEEEEEEE
T ss_pred             ccCCCEEEEcHHHHHhhcCCCeEEEEEEEEe
Confidence            9999999999999999999999999999974

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.87  E-value=4.9e-23  Score=186.12  Aligned_cols=132  Identities=19%  Similarity=0.357  Sum_probs=118.1

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhccccccccCC
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVTFPCRYQMN  101 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~v~C~~~~~  101 (446)
                      .+++++.|.||||.+++.+|+ ++.|||+||..|+.++     ..||+||.++..   .++.++++++.+++|+|+|  .
T Consensus        12 ~~~~~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n--~   88 (170)
T 3hcs_A           12 DPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--E   88 (170)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCS--T
T ss_pred             ccCCCCCCCCCCCChhhcCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCC--C
Confidence            467889999999999999997 6789999999999874     389999998864   5889999999999999998  4


Q ss_pred             CCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHh-hcCCCcceecCccEEEEeecc
Q psy17006        102 GCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLN-QSHKTITTLQGEDIVFLATDI  168 (446)
Q Consensus       102 GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~-~~h~~~~~c~~c~~~f~~~~~  168 (446)
                      ||+|.+++.++++|+++|+|+++.||    +|++.+.+++|..|++ .+..+.+.|++|+..+...+.
T Consensus        89 GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~l  152 (170)
T 3hcs_A           89 GCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDK  152 (170)
T ss_dssp             TCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEEGGGH
T ss_pred             CCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCCCCCccCHHHH
Confidence            99999999999999999999999998    6999999999999996 555688999999987765443

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A

Probab=99.86  E-value=9.3e-23  Score=187.64  Aligned_cols=131  Identities=75%  Similarity=1.320  Sum_probs=79.5

Q ss_pred             HhhhccccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceecCccEEEEeec
Q psy17006         88 VAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATD  167 (446)
Q Consensus        88 ~~~~l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~~c~~~f~~~~  167 (446)
                      ++++++++|+|++.||++.+++.++.+||++|+|+|+.||.++..|+|+|..++|.+|+...|..+.+.+++++.|++.+
T Consensus         1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i~f~~~~   80 (193)
T 2a25_A            1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATD   80 (193)
T ss_dssp             -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEEEEEEEC
T ss_pred             CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceEEEEecc
Confidence            36789999999999999999999999999999999999999877799999999999999999998888999999999999


Q ss_pred             cCcccccceEEEeeeccceEEEEEEeeecc-cchhhHHHHHHhcCcccccce
Q psy17006        168 INLAGAVDWVMMQSCFGHHFMLVLEKQEID-GRQHFFAIVQLIGSRKQAEHF  218 (446)
Q Consensus       168 ~~~~~~~~~~~~~~c~~~~f~~~~~k~~~~-~~~~~~~~~q~~g~~~~~~~~  218 (446)
                      .+++++++|+++|+|+|++|++++++.+.. +.+.||+.++++|++.++.++
T Consensus        81 ~~l~~~~~~~~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f  132 (193)
T 2a25_A           81 INLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENF  132 (193)
T ss_dssp             CC----CEEEEEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTE
T ss_pred             cccccceeEEEEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcce
Confidence            999999999999999999999999988753 456789999999999888664

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.59  E-value=4.8e-16  Score=131.69  Aligned_cols=92  Identities=22%  Similarity=0.439  Sum_probs=80.2

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhccccccccCC
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVTFPCRYQMN  101 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~v~C~~~~~  101 (446)
                      .+.+.+.+.||||.+++.+|+ +..|||+||..|+.++     ..||+||.++..   .++..+++++++++|.|+|  .
T Consensus        12 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n--~   88 (118)
T 3hct_A           12 DPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--E   88 (118)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--T
T ss_pred             ccCCCCCCCCCcCChhhcCeE-ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--C
Confidence            468889999999999999997 5578999999999864     389999998863   4889999999999999997  6


Q ss_pred             CCeeeecCCChhhHhhhCCCccc
Q psy17006        102 GCNVVLLHTEKPEHEDACEYRPY  124 (446)
Q Consensus       102 GC~~~~~~~~~~~H~~~C~~~~v  124 (446)
                      ||+|.+++.++++|+++|.+...
T Consensus        89 gC~~~~~~~~l~~H~~~c~~~~~  111 (118)
T 3hct_A           89 GCLHKMELRHLEDHQAHCEFALL  111 (118)
T ss_dssp             TCCCEEEGGGSGGGTSSSCC---
T ss_pred             CCCCEEeeHHHHHHHHHchhhhh
Confidence            99999999999999999988653

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.56  E-value=1.1e-16  Score=139.88  Aligned_cols=89  Identities=26%  Similarity=0.488  Sum_probs=77.6

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCc------------cccchHHHHHhhhc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLG------------NIRNLAMEKVAETV   92 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~------------~~~~~~~e~~~~~l   92 (446)
                      .+.+++.|.||||.+++.+|+ +..|||+||..|+.++     ..||+||.++.            .+++.++++++.+|
T Consensus        25 ~~~l~~~~~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L  103 (141)
T 3knv_A           25 GTKLEAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL  103 (141)
T ss_dssp             GGGCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred             hccCCcCcCCCCCChhhcCcE-ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence            367889999999999999997 6788999999999874     37999998642            13789999999999


Q ss_pred             cccccccCCCCeeeecCCChhh-HhhhCCC
Q psy17006         93 TFPCRYQMNGCNVVLLHTEKPE-HEDACEY  121 (446)
Q Consensus        93 ~v~C~~~~~GC~~~~~~~~~~~-H~~~C~~  121 (446)
                      +|+|+|  .||.|.++++++++ |+..|+-
T Consensus       104 ~v~Cpn--~GC~~~~~l~~l~~~H~~~~~~  131 (141)
T 3knv_A          104 PAVCPS--DGCTWKGTLKEYESCHEGRCPL  131 (141)
T ss_dssp             EEECCS--TTCCCEEEHHHHHHHTTTCCHH
T ss_pred             ccccCC--CCCCCEeEHHHHHHHHHHHhHH
Confidence            999999  69999999999998 9987753

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.53  E-value=8.7e-16  Score=129.57  Aligned_cols=90  Identities=19%  Similarity=0.407  Sum_probs=78.8

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----ccchHHHHHhhhccccccccC
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAETVTFPCRYQM  100 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----~~~~~~e~~~~~l~v~C~~~~  100 (446)
                      .+++.+.+.||||.+++.+|+ +..|||.||..|+.++     ..||.||.++..    ..+..+.++++++++.|+|. 
T Consensus        17 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~-   94 (116)
T 1rmd_A           17 PAHFVKSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ-   94 (116)
T ss_dssp             CHHHHHHTBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST-
T ss_pred             HHhccCCCCCCCCCcHhcCcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC-
Confidence            456677899999999999998 4677999999999753     479999998863    25688999999999999996 


Q ss_pred             CCCeeeecCCChhhHhhhCCCc
Q psy17006        101 NGCNVVLLHTEKPEHEDACEYR  122 (446)
Q Consensus       101 ~GC~~~~~~~~~~~H~~~C~~~  122 (446)
                       ||+|.++++++++|+++|.++
T Consensus        95 -gC~~~~~~~~~~~H~~~C~~~  115 (116)
T 1rmd_A           95 -DCNEEVSLEKYNHHVSSHKES  115 (116)
T ss_dssp             -TCCCEEEHHHHHHHHHTSCCC
T ss_pred             -CCcchhhHhHHHHHHHHhhcc
Confidence             999999999999999999875

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.24  E-value=2.2e-12  Score=116.02  Aligned_cols=97  Identities=18%  Similarity=0.315  Sum_probs=86.5

Q ss_pred             eeeeccCcccccCcccCC-----CCCCCCCCCCCc---cccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCC
Q psy17006        218 FTYCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEY  289 (446)
Q Consensus       218 ~~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~---~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~  289 (446)
                      ..++++||++|..|..+.     ..||.||.++..   .++..+++.+.++.+.|+|  .||++.+++.++..|+++|+|
T Consensus        31 pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n--~GC~~~~~~~~l~~H~~~C~~  108 (170)
T 3hcs_A           31 AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEF  108 (170)
T ss_dssp             EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCS--TTCCCEEEGGGHHHHHTTCTT
T ss_pred             cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCC--CCCCceecHhHHHHHHhcCCc
Confidence            356899999999999873     389999999875   4678899999999999998  499999999999999999999


Q ss_pred             CCccCCCCCCCcccccChhHHHHHhhhccCc
Q psy17006        290 RPYHCPCPGASCKWSGALDQVMGHLNQSHKT  320 (446)
Q Consensus       290 ~~~~Cp~~~~~C~~~g~~~~l~~H~~~~H~~  320 (446)
                      +++.||    +|++.+.+.+|..|++.....
T Consensus       109 ~~v~C~----~C~~~~~r~~l~~H~~~~C~~  135 (170)
T 3hcs_A          109 ALMDCP----QCQRPFQKFHINIHILKDCPR  135 (170)
T ss_dssp             SEEECT----TTCCEEEGGGHHHHHHHTCTT
T ss_pred             eeeECC----CCChHHHHHHHHHHhhhhCCC
Confidence            999998    699999999999999766554

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.83  E-value=1.1e-09  Score=87.84  Aligned_cols=69  Identities=17%  Similarity=0.362  Sum_probs=55.9

Q ss_pred             CccCCCCceecccccCcCcCcccccc-ccceeccCcccCC------CCCCCCCCCCc----cccchHHHHHhhhcccccc
Q psy17006         29 TSTDLASLFECPVCFDYVLPPIIQCQ-SGHLVCSNCRPKL------SCCSTCRGPLG----NIRNLAMEKVAETVTFPCR   97 (446)
Q Consensus        29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~------~~CP~Cr~~~~----~~~~~~~e~~~~~l~v~C~   97 (446)
                      ..+++.+.+.||||.+++.+|+ ... |||.||..|+..+      ..||.||.++.    ..+|..+++++..+.-.-.
T Consensus         6 ~~~~~~~~~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~   84 (92)
T 3ztg_A            6 EDDPIPDELLCLICKDIMTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG   84 (92)
T ss_dssp             SCCCCCTTTEETTTTEECSSCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred             ccccCCcCCCCCCCChhhcCce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence            3467888999999999999998 445 7999999999763      48999999873    3578999999888766544


Q ss_pred             c
Q psy17006         98 Y   98 (446)
Q Consensus        98 ~   98 (446)
                      +
T Consensus        85 ~   85 (92)
T 3ztg_A           85 Y   85 (92)
T ss_dssp             C
T ss_pred             H
Confidence            3

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.83  E-value=6.1e-10  Score=86.56  Aligned_cols=63  Identities=16%  Similarity=0.375  Sum_probs=51.8

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVT   93 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~   93 (446)
                      ..++.+.+.||||.+++.+|+ ...|||+||..|+.++     ..||.||.++..   .+|..+++++..+.
T Consensus         2 ~~~~~~~~~C~IC~~~~~~Pv-~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~   72 (78)
T 1t1h_A            2 SPEFPEYFRCPISLELMKDPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEE-EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred             CcCCcccCCCCCccccccCCE-EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence            356788999999999999998 4567999999999753     479999998852   47888888887654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.77  E-value=4.2e-09  Score=85.72  Aligned_cols=66  Identities=17%  Similarity=0.099  Sum_probs=54.7

Q ss_pred             CccCCCCceecccccCcCcCcccccccc-ceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcccc
Q psy17006         29 TSTDLASLFECPVCFDYVLPPIIQCQSG-HLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVTFP   95 (446)
Q Consensus        29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~G-H~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~v~   95 (446)
                      ...++.+.|.||||+++|.+|| ...+| |+||..|+.++    ..||.|++++..   ++|..++++|..+.-.
T Consensus        15 ~~~~~p~~~~CpI~~~~m~dPV-~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~   88 (98)
T 1wgm_A           15 TYADACDEFLDPIMSTLMCDPV-VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             CCCSCCTTTBCTTTCSBCSSEE-ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred             hhhcCcHhcCCcCccccccCCe-ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHH
Confidence            3467788999999999999998 44568 99999998864    579999998863   5899999998877543

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.72  E-value=5.3e-09  Score=82.84  Aligned_cols=63  Identities=13%  Similarity=0.086  Sum_probs=53.1

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVT   93 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~   93 (446)
                      ..++.+.|.||||+++|.+|| ...+||+||..|+.++    ..||.|++++..   .+|.++++++..+.
T Consensus         8 ~~~~p~~~~CpI~~~~m~dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~   77 (85)
T 2kr4_A            8 YSDAPDEFRDPLMDTLMTDPV-RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM   77 (85)
T ss_dssp             CTTCCTTTBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             hhcCchheECcccCchhcCCe-ECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence            456788999999999999998 4457999999999874    689999998863   58999998887763

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.67  E-value=3.5e-09  Score=82.26  Aligned_cols=49  Identities=24%  Similarity=0.694  Sum_probs=41.7

Q ss_pred             CccCCCCceecccccCcCcCccccccccceeccCcccC-----------CCCCCCCCCCCc
Q psy17006         29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----------LSCCSTCRGPLG   78 (446)
Q Consensus        29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-----------~~~CP~Cr~~~~   78 (446)
                      ..+++.+.+.|+||.+.+.+|+ ...|||.||..|+.+           ...||.||.++.
T Consensus         5 ~~~~~~~~~~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A            5 SSGNVQEEVTCPICLELLTEPL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             SSCCCCCCCEETTTTEECSSCC-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             hHhhcccCCCCcCCCcccCCee-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            3467888999999999999998 456799999999985           247999999885

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.66  E-value=1.4e-08  Score=83.01  Aligned_cols=63  Identities=13%  Similarity=0.105  Sum_probs=53.2

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVT   93 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~   93 (446)
                      ..++.+.|.||||+++|.+|| ...|||+||..|+.++    ..||.|+.++..   ++|..+++++..+.
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~   92 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPV-RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM   92 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEE-EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred             hccCcHhhCCcCccCcccCCe-ECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence            456788999999999999998 4457999999999764    589999998863   58999999988764

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=6.3e-09  Score=81.73  Aligned_cols=50  Identities=26%  Similarity=0.715  Sum_probs=42.2

Q ss_pred             CCccCCCCceecccccCcCcCccccccccceeccCcccC----------CCCCCCCCCCCc
Q psy17006         28 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----------LSCCSTCRGPLG   78 (446)
Q Consensus        28 ~~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~----------~~~CP~Cr~~~~   78 (446)
                      +..+++.+.+.|+||.+.+.+|+ ...|||.||..|+.+          ...||.||.++.
T Consensus        11 ~~~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           11 GILVNVKEEVTCPICLELLTQPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCCCCCCCTTTCSCCSSCB-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             HHHHHccCCCCCCCCCcccCCce-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            34567888999999999999997 346799999999975          358999999876

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.66  E-value=3.8e-09  Score=83.02  Aligned_cols=59  Identities=22%  Similarity=0.555  Sum_probs=46.2

Q ss_pred             CCccCCCCceecccccCcCcCccccccccceeccCcccC----------CCCCCCCCCCCcc---ccchHHHH
Q psy17006         28 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----------LSCCSTCRGPLGN---IRNLAMEK   87 (446)
Q Consensus        28 ~~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~----------~~~CP~Cr~~~~~---~~~~~~e~   87 (446)
                      ...+++.+.+.|+||.+.+.+|+ ...|||.||..|+.+          ...||.||.++..   .+|..+++
T Consensus        11 ~~~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecw_A           11 SVLEMIKEEVTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN   82 (85)
T ss_dssp             CCCCCCCTTTSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred             HHHHhCccCCCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence            44567888999999999999998 456799999999975          3479999998862   34544443

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=98.65  E-value=2e-09  Score=83.32  Aligned_cols=36  Identities=19%  Similarity=0.500  Sum_probs=31.5

Q ss_pred             CChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhh
Q psy17006        110 TEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQ  148 (446)
Q Consensus       110 ~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~  148 (446)
                      .+++.|++.|+|.+|.||+   +|+..+.+++|.+|+..
T Consensus         3 ~~l~~H~~~C~~~~v~C~~---~C~~~v~r~~l~~H~~~   38 (76)
T 2yuc_A            3 SGSSGHLNTCSFNVIPCPN---RCPMKLSRRDLPAHLQH   38 (76)
T ss_dssp             CSCSCCCCCCCCSCCBCTT---CCSCBCCSSSSTTTTTT
T ss_pred             hHHHHHHHHCCCcccCCCc---cccHHhhHhHHHhhCHh
Confidence            5788999999999999986   79999999999998863

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.62  E-value=2.6e-09  Score=87.02  Aligned_cols=64  Identities=25%  Similarity=0.570  Sum_probs=52.0

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVT   93 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~   93 (446)
                      .+++.+.+.|+||.+.+.+|+..-.|||.||..|+.++    ..||.||.++..   .+|..+++++..++
T Consensus        16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~   86 (99)
T 2y43_A           16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN   86 (99)
T ss_dssp             GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence            45667889999999999999743357999999999764    589999998863   47888888887664

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=2.1e-08  Score=78.40  Aligned_cols=60  Identities=20%  Similarity=0.448  Sum_probs=46.3

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc--ccchHHHHHhh
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN--IRNLAMEKVAE   90 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~--~~~~~~e~~~~   90 (446)
                      .++..+.+.|+||.+.+.+|+ ...|||.||..|+.++    ..||+||.++..  .++..+...+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~   74 (81)
T 2csy_A            9 SEEEEIPFRCFICRQAFQNPV-VTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ   74 (81)
T ss_dssp             SSCCCCCSBCSSSCSBCCSEE-ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred             cccCCCCCCCcCCCchhcCee-EccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence            456667899999999999998 4567999999999874    579999998763  24555544443

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=2e-08  Score=76.75  Aligned_cols=49  Identities=18%  Similarity=0.520  Sum_probs=42.0

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      .+++++.+.|+||.+.+.+|+....|||.||..|+.++    ..||+||.++.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   61 (72)
T 2djb_A            9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH   61 (72)
T ss_dssp             CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence            46788899999999999999843367999999999764    58999999886

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.58  E-value=1.2e-08  Score=85.75  Aligned_cols=63  Identities=22%  Similarity=0.481  Sum_probs=50.9

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC--CCCCCCCCCCcc---ccchHHHHHhhhc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLGN---IRNLAMEKVAETV   92 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~~---~~~~~~e~~~~~l   92 (446)
                      .+.+.+.+.||||.+++.+|+....|||.||..|+..+  ..||+||.++..   .+|..+.+++..+
T Consensus        16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~   83 (117)
T 1jm7_B           16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC   83 (117)
T ss_dssp             HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred             HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHH
Confidence            45667889999999999999844367999999999986  579999998752   4677777777644

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=3.2e-08  Score=75.51  Aligned_cols=48  Identities=25%  Similarity=0.699  Sum_probs=40.9

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG   78 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~   78 (446)
                      .+++.+.+.|+||.+.+.+|+. ..|||.||..|+.++       ..||+||.++.
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence            4677889999999999999983 367999999998764       27999999875

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.56  E-value=2.8e-08  Score=76.33  Aligned_cols=48  Identities=19%  Similarity=0.458  Sum_probs=40.7

Q ss_pred             ccCCCCceecccccCcCcCcccccc-ccceeccCcccCC------CCCCCCCCCCc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQ-SGHLVCSNCRPKL------SCCSTCRGPLG   78 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~------~~CP~Cr~~~~   78 (446)
                      .+++.+.+.|+||.+++.+|+ ... |||.||..|+.++      ..||+||+++.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A            9 DDPIPDELLCLICKDIMTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CCCSCGGGSCSSSCCCCTTCE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             cccCCCCCCCcCCChHHhCCe-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            467788999999999999998 445 7999999999763      48999999753

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=2.6e-08  Score=74.67  Aligned_cols=48  Identities=23%  Similarity=0.636  Sum_probs=41.0

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLG   78 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~   78 (446)
                      .+.+.+.+.|+||.+.+.+|+ ...|||.||..|+.++     ..||+||.++.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (66)
T 2ecy_A            9 VKTVEDKYKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESIV   61 (66)
T ss_dssp             CCSCCCCEECTTTCCEESSCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred             hhcCCcCCCCCCCChHhcCee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence            356778899999999999998 4577999999999853     47999999875

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.48  E-value=1.3e-08  Score=86.32  Aligned_cols=61  Identities=28%  Similarity=0.628  Sum_probs=49.8

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----ccchHHHHHhhhc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAETV   92 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----~~~~~~e~~~~~l   92 (446)
                      +.+.+.+.||||.+++.+|+ ...|||.||..|+..+     ..||.||.++..    .+|..+.+++..+
T Consensus        47 ~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~  116 (124)
T 3fl2_A           47 SKVEETFQCICCQELVFRPI-TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL  116 (124)
T ss_dssp             HHHHHHTBCTTTSSBCSSEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred             HhCccCCCCCcCChHHcCcE-EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence            45567899999999999998 4467999999999753     489999998863    4788888887654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.48  E-value=2e-08  Score=83.02  Aligned_cols=63  Identities=16%  Similarity=0.416  Sum_probs=50.3

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc-------ccchHHHHHhhhc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN-------IRNLAMEKVAETV   92 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~-------~~~~~~e~~~~~l   92 (446)
                      .+++.+.+.|+||.+++.+|+....|||.||..|+.++    ..||.||.++..       .+|..+++++..+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~   82 (108)
T 2ckl_A            9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL   82 (108)
T ss_dssp             HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred             hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence            35677889999999999999843367999999999764    589999998753       3577777777654

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.45  E-value=4.2e-08  Score=76.28  Aligned_cols=50  Identities=24%  Similarity=0.675  Sum_probs=39.9

Q ss_pred             CccCCCCceecccccCcCc--Ccc-ccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006         29 TSTDLASLFECPVCFDYVL--PPI-IQCQSGHLVCSNCRPKL-----SCCSTCRGPLG   78 (446)
Q Consensus        29 ~~~~l~~~l~C~iC~~~l~--~Pv-~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~   78 (446)
                      ...++.+.+.||||.+.+.  ++. +.|.|||.||..|+.++     ..||.||+++.
T Consensus         4 ~~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~   61 (78)
T 1e4u_A            4 SPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   61 (78)
T ss_dssp             CSCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred             cccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence            4566788899999999984  343 35667999999998764     47999999875

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.45  E-value=1.3e-08  Score=83.13  Aligned_cols=67  Identities=22%  Similarity=0.512  Sum_probs=49.4

Q ss_pred             CccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHH---hhhcccc
Q psy17006         29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKV---AETVTFP   95 (446)
Q Consensus        29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~---~~~l~v~   95 (446)
                      ..+.+.+.+.|+||.+++.+|+..-.|||.||..|+.++     ..||.||.++..   .+++.++.+   +.+++..
T Consensus        15 ~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~~   92 (100)
T 3lrq_A           15 SVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLC   92 (100)
T ss_dssp             HHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC-
T ss_pred             ccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHHH
Confidence            346778899999999999999832567999999999864     489999998752   345544443   4445443

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=8e-08  Score=73.09  Aligned_cols=47  Identities=21%  Similarity=0.583  Sum_probs=39.3

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      +...+.+.|+||.+.+.+|+ ...|||.||..|+.++    ..||+||.++.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           10 APSLTVPECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             CSSSSCCBCSSSSSBCSSEE-EETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             ccCCCCCCCccCCcccCCCE-EccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            34456789999999999997 4467999999999864    57999999875

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.43  E-value=2.2e-08  Score=87.97  Aligned_cols=60  Identities=28%  Similarity=0.619  Sum_probs=49.6

Q ss_pred             CCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----ccchHHHHHhhhcc
Q psy17006         33 LASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAETVT   93 (446)
Q Consensus        33 l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----~~~~~~e~~~~~l~   93 (446)
                      +.+.+.|+||.+++.+|+ ...|||+||..|+..+     ..||+||.++..    .+|..+++++..+.
T Consensus        75 l~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~  143 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF  143 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred             CccCCEeecCChhhcCCE-EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence            456789999999999998 4577999999999864     379999998863    37888888887654

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.42  E-value=8.9e-08  Score=79.98  Aligned_cols=62  Identities=19%  Similarity=0.563  Sum_probs=47.0

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----------ccchHHHHHhhhc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----------IRNLAMEKVAETV   92 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----------~~~~~~e~~~~~l   92 (446)
                      ...+.+.+.|+||.+++.+|+. -.|||.||..|+.++     ..||.||.++..          ..|..+..++..+
T Consensus         9 ~~~~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~   85 (115)
T 3l11_A            9 AIPSLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH   85 (115)
T ss_dssp             CCCCHHHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred             ccCCCCCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence            3456678999999999999983 367999999999875     379999998752          1355565555443

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.42  E-value=4.7e-08  Score=87.09  Aligned_cols=65  Identities=22%  Similarity=0.460  Sum_probs=51.5

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----ccchHHHHHhhhccc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAETVTF   94 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----~~~~~~e~~~~~l~v   94 (446)
                      .+++.+.+.||||.+++.+|+....|||.||..|+.++     ..||+||.++..    .+|..+++++..+.-
T Consensus        48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            45667889999999999999843367999999999864     469999998852    378889999887753

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.41  E-value=3e-08  Score=85.78  Aligned_cols=58  Identities=21%  Similarity=0.551  Sum_probs=43.5

Q ss_pred             CCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCccc-cchHHHHHhh
Q psy17006         32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGNI-RNLAMEKVAE   90 (446)
Q Consensus        32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~~-~~~~~e~~~~   90 (446)
                      .+++.+.||||.+.+.+|+ ...|||.||..|+.++    ..||.||.++... .+..+...++
T Consensus        49 ~~~~~~~C~iC~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~  111 (138)
T 4ayc_A           49 VLENELQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCIN  111 (138)
T ss_dssp             HHHHHSBCTTTCSBCSSEE-EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHH
T ss_pred             hccccCCCcccCcccCCce-ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHH
Confidence            3456789999999999998 4567999999998764    5799999998642 3444333333

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.41  E-value=1.9e-07  Score=67.66  Aligned_cols=44  Identities=23%  Similarity=0.486  Sum_probs=37.7

Q ss_pred             CCceecccccCcCcCccccccccceeccCcccCC-CCCCCCCCCCc
Q psy17006         34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCSTCRGPLG   78 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~CP~Cr~~~~   78 (446)
                      .+.+.|+||.+.+.+|+ .-.|||.||..|+.+. ..||+||+++.
T Consensus         4 ~~~~~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPK-LLPCLHTLCSGCLEASGMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCS-CSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeE-EcCCCCcccHHHHccCCCCCCcCCcEee
Confidence            46788999999999997 4456999999999875 58999999875

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=1.6e-07  Score=74.15  Aligned_cols=49  Identities=29%  Similarity=0.690  Sum_probs=41.2

Q ss_pred             CccCCCCceecccccCcCcC----ccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006         29 TSTDLASLFECPVCFDYVLP----PIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG   78 (446)
Q Consensus        29 ~~~~l~~~l~C~iC~~~l~~----Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~   78 (446)
                      ..+.+.+.+.|+||.+.+.+    |+ ...|||.||..|+.++       ..||.||.++.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A            8 NLDALREVLECPICMESFTEEQLRPK-LLHCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             SCCCCCSCCBCTTTCCBCCTTSSCEE-ECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             ChhhccCCCCCccCCccccccCCCeE-ECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            45678889999999999998    87 3467999999999864       48999999875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=1.3e-07  Score=76.31  Aligned_cols=62  Identities=19%  Similarity=0.389  Sum_probs=49.6

Q ss_pred             CCCCceecccccCcCcCccccccccceeccCcccCC----------CCCCC--CCCC-Cc---cccchHHHHHhhhcc
Q psy17006         32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----------SCCST--CRGP-LG---NIRNLAMEKVAETVT   93 (446)
Q Consensus        32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----------~~CP~--Cr~~-~~---~~~~~~~e~~~~~l~   93 (446)
                      ...+.|.||||+++|.+||..-.|||+||..|+.++          ..||.  |+.. +.   ..+|..|+++|..+.
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~   80 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN   80 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence            345779999999999999842247999999998763          28999  9866 54   358999999998775

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=1.1e-07  Score=71.49  Aligned_cols=48  Identities=27%  Similarity=0.691  Sum_probs=39.8

Q ss_pred             ccCCCCceecccccCcCcCc-------cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         30 STDLASLFECPVCFDYVLPP-------IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~P-------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      .+.+.+.+.|+||.+.+.+|       + .-.|||.||..|+.++    ..||+||.++.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEE-ECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeE-eCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            45667889999999999887       4 4456999999999874    58999999875

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=2.5e-07  Score=68.47  Aligned_cols=43  Identities=28%  Similarity=0.763  Sum_probs=36.3

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCC
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTC   73 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~C   73 (446)
                      .+.+.+.+.|+||.+.+.+|+ ...|||.||..|+.++       ..||+|
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCE-ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHhCccCCCCCcCCchhCCeE-EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            467888999999999999998 3477999999998763       379987

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.32  E-value=1.5e-07  Score=79.09  Aligned_cols=71  Identities=18%  Similarity=0.316  Sum_probs=60.0

Q ss_pred             eeeccCcccccCcccCC-----CCCCCCCCCCCcc---ccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCC
Q psy17006        219 TYCQSGHLVCSNCRPKL-----SCCSTCRGPLGNI---RNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYR  290 (446)
Q Consensus       219 ~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~~---r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~  290 (446)
                      ...++||++|..|..+.     ..||.||.++...   ++..+++...++++.|+|  .||++.+++.++..|+++|.+.
T Consensus        32 ~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n--~gC~~~~~~~~l~~H~~~c~~~  109 (118)
T 3hct_A           32 VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFA  109 (118)
T ss_dssp             EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--TTCCCEEEGGGSGGGTSSSCC-
T ss_pred             EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--CCCCCEEeeHHHHHHHHHchhh
Confidence            34588999999999763     3899999998753   578889999999999997  6999999999999999999886


Q ss_pred             C
Q psy17006        291 P  291 (446)
Q Consensus       291 ~  291 (446)
                      .
T Consensus       110 ~  110 (118)
T 3hct_A          110 L  110 (118)
T ss_dssp             -
T ss_pred             h
Confidence            4

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.31  E-value=3e-07  Score=88.29  Aligned_cols=62  Identities=23%  Similarity=0.291  Sum_probs=52.2

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVT   93 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~   93 (446)
                      .++.+.|.||||.+++.+|| ...|||+||..|+.+.     ..||.|+.++..   ++|..++++|..+.
T Consensus       203 ~~~~~~~~c~i~~~~~~dPv-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~  272 (281)
T 2c2l_A          203 RDIPDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI  272 (281)
T ss_dssp             CCCCSTTBCTTTCSBCSSEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred             CCCCcccCCcCcCCHhcCCe-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence            46668899999999999998 4557999999999863     349999999863   58999999988765

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=3.9e-08  Score=75.79  Aligned_cols=49  Identities=22%  Similarity=0.544  Sum_probs=42.0

Q ss_pred             ccCCCCceecccccCcCcCccccccccce-eccCcccCCCCCCCCCCCCcc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCSTCRGPLGN   79 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~CP~Cr~~~~~   79 (446)
                      .+++.+.+.|+||.+.+.+|++ -.|||. ||..|+.+...||+||.++..
T Consensus        19 ~~~~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           19 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAVDKCPMCYTVITF   68 (75)
T ss_dssp             HHHHHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred             HHcCCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhCCCCCccCCceecC
Confidence            3556678899999999999983 456999 999999999999999998864

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=2.5e-07  Score=67.06  Aligned_cols=43  Identities=28%  Similarity=0.741  Sum_probs=36.0

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCC
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTC   73 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~C   73 (446)
                      .+++.+.+.|+||.+.+.+|+ ...|||.||..|+.++       ..||+|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            9 LENLQVEASCSVCLEYLKEPV-IIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SSCSCCCCBCSSSCCBCSSCC-CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hhccccCCCCccCCcccCccE-eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            466778899999999999997 4567999999998754       478887

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.25  E-value=5.7e-08  Score=80.57  Aligned_cols=47  Identities=28%  Similarity=0.853  Sum_probs=39.1

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG   78 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~   78 (446)
                      +.+.+.+.|+||.+.+.+|+ ...|||.||..|+.++       ..||.||.++.
T Consensus        16 ~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           16 NAMQKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             HHHHHHTSCSSSCCCCSSCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             HhccCCCCCcccChhhcCeE-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            34556789999999999998 4567999999998763       27999999875

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.20  E-value=4.3e-07  Score=81.66  Aligned_cols=63  Identities=22%  Similarity=0.300  Sum_probs=52.9

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVT   93 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~   93 (446)
                      ..++.+.|.||||+++|.+||. ..|||+||..|+.+.     ..||.|+.++..   .+|.++.+++..+.
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~  170 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI  170 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             ccCCcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence            4567889999999999999984 467999999999863     259999999863   58999999988764

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.20  E-value=3.3e-07  Score=76.57  Aligned_cols=70  Identities=20%  Similarity=0.328  Sum_probs=59.5

Q ss_pred             eeeccCcccccCcccC-----CCCCCCCCCCCCcc----ccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCC
Q psy17006        219 TYCQSGHLVCSNCRPK-----LSCCSTCRGPLGNI----RNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEY  289 (446)
Q Consensus       219 ~~C~~gh~~C~~C~~~-----~~~Cp~Cr~~~~~~----r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~  289 (446)
                      ..-+.||++|..|..+     ...||.||.++...    .+..+.++...+.+.|+|.  ||++.+++.++..|+++|.+
T Consensus        37 ~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~~~~~~~~~~~H~~~C~~  114 (116)
T 1rmd_A           37 VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCNEEVSLEKYNHHVSSHKE  114 (116)
T ss_dssp             EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCCCEEEHHHHHHHHHTSCC
T ss_pred             EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCcchhhHhHHHHHHHHhhc
Confidence            3458899999999875     24899999998742    3577889999999999996  99999999999999999987


Q ss_pred             C
Q psy17006        290 R  290 (446)
Q Consensus       290 ~  290 (446)
                      .
T Consensus       115 ~  115 (116)
T 1rmd_A          115 S  115 (116)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.20  E-value=1e-06  Score=68.00  Aligned_cols=50  Identities=30%  Similarity=0.511  Sum_probs=39.7

Q ss_pred             CccCCCCceecccccCcCcCcc--ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         29 TSTDLASLFECPVCFDYVLPPI--IQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        29 ~~~~l~~~l~C~iC~~~l~~Pv--~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      ..+.+.+.+.|+||++.+..|.  ..-.|||.||..|+.++    ..||+||.++.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   63 (78)
T 2ect_A            8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT   63 (78)
T ss_dssp             CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred             CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence            3456677899999999998663  22357999999999864    58999999875

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.16  E-value=2.1e-07  Score=70.43  Aligned_cols=48  Identities=27%  Similarity=0.710  Sum_probs=38.4

Q ss_pred             cCCCCceecccccCcCcCcc------ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         31 TDLASLFECPVCFDYVLPPI------IQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv------~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      ....+.+.|+||.+.+.+|+      ..-.|||.||..|+.++    ..||+||.++.
T Consensus         5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   62 (71)
T 3ng2_A            5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   62 (71)
T ss_dssp             -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence            34456789999999998872      24567999999999764    68999999875

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.12  E-value=2.2e-07  Score=71.43  Aligned_cols=49  Identities=22%  Similarity=0.544  Sum_probs=42.0

Q ss_pred             ccCCCCceecccccCcCcCccccccccce-eccCcccCCCCCCCCCCCCcc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCSTCRGPLGN   79 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~CP~Cr~~~~~   79 (446)
                      .+++.+.+.|+||.+.+.+|++ -.|||. ||..|+.++..||+||+++..
T Consensus        18 ~~~~~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~CP~Cr~~i~~   67 (74)
T 4ic3_A           18 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAVDKCPMCYTVITF   67 (74)
T ss_dssp             HHHHHHHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred             HhcCccCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcCccCCCcCcCccC
Confidence            3456678899999999999984 356999 999999999999999998863

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.12  E-value=3.2e-07  Score=68.39  Aligned_cols=44  Identities=30%  Similarity=0.625  Sum_probs=36.1

Q ss_pred             CceecccccC-cCcCcc---ccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006         35 SLFECPVCFD-YVLPPI---IQCQSGHLVCSNCRPKL-----SCCSTCRGPLG   78 (446)
Q Consensus        35 ~~l~C~iC~~-~l~~Pv---~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~   78 (446)
                      +.+.||||.+ ++.+|.   ..-.|||.||..|+.++     ..||.||.++.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence            4688999999 898884   13456999999999865     47999999885

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=1.1e-06  Score=67.35  Aligned_cols=48  Identities=21%  Similarity=0.383  Sum_probs=38.1

Q ss_pred             cCCCCceecccccCcCcCc--cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         31 TDLASLFECPVCFDYVLPP--IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~P--v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      +...+...|+||.+.+..+  +..-.|||.||..|+.++    ..||+||.++.
T Consensus        18 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~   71 (75)
T 1x4j_A           18 NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG   71 (75)
T ss_dssp             SCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred             cccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence            4455678999999999876  223356999999999874    68999999875

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.07  E-value=1.8e-06  Score=61.85  Aligned_cols=46  Identities=24%  Similarity=0.439  Sum_probs=35.9

Q ss_pred             CCCceecccccCcCcC---ccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         33 LASLFECPVCFDYVLP---PIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        33 l~~~l~C~iC~~~l~~---Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      +++...|+||.+.+.+   ++..-.|||.||..|+.++    ..||+||.++.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4567899999999976   4422236999999999864    58999998763

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=1.6e-06  Score=69.53  Aligned_cols=54  Identities=22%  Similarity=0.450  Sum_probs=34.6

Q ss_pred             ccCcccCCCCCeEeecCCCchhHHhhCCCCCccCCCCCCCcccccChhHHHHHhhhc
Q psy17006        261 TFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQS  317 (446)
Q Consensus       261 ~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g~~~~l~~H~~~~  317 (446)
                      +++||+   .|...+.|.++++|+..||...+.|++...||.+++.+.+|.+|++..
T Consensus        37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~C   90 (100)
T 2yre_A           37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMC   90 (100)
T ss_dssp             EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTC
T ss_pred             eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhC
Confidence            556664   466666666666666666666666666666666666666666666543

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=1.5e-06  Score=66.33  Aligned_cols=50  Identities=24%  Similarity=0.443  Sum_probs=39.8

Q ss_pred             ccCCCCceecccccCcCcCcc--ccccccceeccCcccCC----CCCCCCCCCCcc
Q psy17006         30 STDLASLFECPVCFDYVLPPI--IQCQSGHLVCSNCRPKL----SCCSTCRGPLGN   79 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv--~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~   79 (446)
                      ..++.+...|+||.+.+..|.  ....|||.||..|+.++    ..||+||.++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A            9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            356667889999999998774  22367999999999864    589999998753

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.04  E-value=1.6e-06  Score=64.99  Aligned_cols=45  Identities=20%  Similarity=0.526  Sum_probs=36.9

Q ss_pred             CceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc
Q psy17006         35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN   79 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~   79 (446)
                      +...|+||.+.+.+|+..-.|||.||..|+.++    ..||.||.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            456899999999997534457999999999763    689999998863

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.00  E-value=5.7e-07  Score=66.43  Aligned_cols=44  Identities=30%  Similarity=0.831  Sum_probs=36.3

Q ss_pred             CceecccccCcCcCcc------ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         35 SLFECPVCFDYVLPPI------IQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv------~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      +.+.|+||.+.+.+|.      ....|||.||..|+.++    ..||.||.++.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   55 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   55 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence            4688999999998872      24567999999999864    58999999876

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.00  E-value=9.3e-07  Score=66.76  Aligned_cols=47  Identities=26%  Similarity=0.520  Sum_probs=39.1

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      .+++.+.+.|+||.+.+.+ + .-.|||.||..|+.++    ..||+||.++.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   59 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-L-ILPCAHSFCQKCIDKWSDRHRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-E-EETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred             hhcCCCCCCCeeCCcCccC-c-ccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence            3566778999999999988 5 4456999999999864    57999999875

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=97.99  E-value=2.2e-07  Score=80.70  Aligned_cols=69  Identities=25%  Similarity=0.393  Sum_probs=55.1

Q ss_pred             eeeeccCcccccCcccCC-----CCCCCCCCCCCc------------cccHHHHHHHhhcccCcccCCCCCeEeecCCCc
Q psy17006        218 FTYCQSGHLVCSNCRPKL-----SCCSTCRGPLGN------------IRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK  280 (446)
Q Consensus       218 ~~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~------------~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l  280 (446)
                      ..+.++||++|..|..+.     ..||.||.++..            .++..+++.+.++++.|+|  .||.+++.+.++
T Consensus        44 pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v~Cpn--~GC~~~~~l~~l  121 (141)
T 3knv_A           44 PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPS--DGCTWKGTLKEY  121 (141)
T ss_dssp             EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEEECCS--TTCCCEEEHHHH
T ss_pred             cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcccccccCC--CCCCCEeEHHHH
Confidence            356799999999998863     379999987531            2567889999999999998  588888888888


Q ss_pred             hh-HHhhCC
Q psy17006        281 PE-HEDACE  288 (446)
Q Consensus       281 ~~-He~~C~  288 (446)
                      .. |+..|.
T Consensus       122 ~~~H~~~~~  130 (141)
T 3knv_A          122 ESCHEGRCP  130 (141)
T ss_dssp             HHHTTTCCH
T ss_pred             HHHHHHHhH
Confidence            86 777664

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=97.99  E-value=3.3e-06  Score=64.96  Aligned_cols=59  Identities=19%  Similarity=0.361  Sum_probs=51.2

Q ss_pred             ccccccccCCCCeeeecCCChhhHhh-hCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceec
Q psy17006         92 VTFPCRYQMNGCNVVLLHTEKPEHED-ACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQ  157 (446)
Q Consensus        92 l~v~C~~~~~GC~~~~~~~~~~~H~~-~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~  157 (446)
                      ..|.||+   ||+..+...++++|+. +|+++++.|++    |++.+.+.+|..|.+.|...++.|.
T Consensus        15 ~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~~~Cp~~~v~C~   74 (76)
T 2yuc_A           15 NVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHEGMCPQESSGPS   74 (76)
T ss_dssp             SCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTTTSCTTSSCCCS
T ss_pred             cccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHHhHCCCCccCCC
Confidence            5688886   8999999999999997 99999999995    9999999999999977665555553

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.95  E-value=1.4e-06  Score=69.76  Aligned_cols=58  Identities=16%  Similarity=0.309  Sum_probs=46.7

Q ss_pred             CCC-CCCCCCCccc-cHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCccCC
Q psy17006        237 CCS-TCRGPLGNIR-NLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCP  295 (446)
Q Consensus       237 ~Cp-~Cr~~~~~~r-~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp  295 (446)
                      .|| .|...+.... ..|+ .+|++..++|+|+.+||+.++.|.+|.+||+.||-+.+.|.
T Consensus        39 ~CP~~Cga~i~rckL~EH~-~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~   98 (100)
T 2yre_A           39 GCPLVCGAVFHSCKADEHR-LLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS   98 (100)
T ss_dssp             ECTTCCSCEEEHHHHHHHH-HHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred             eCCcccCCeeehhhHHHHH-hhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence            488 6876333222 2344 56999999999999999999999999999999999887765

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=97.89  E-value=3.3e-06  Score=63.51  Aligned_cols=49  Identities=18%  Similarity=0.409  Sum_probs=37.5

Q ss_pred             cCCCCceecccccCcCcC--ccccccccceeccCcccCC----CCCCCCCCCCcc
Q psy17006         31 TDLASLFECPVCFDYVLP--PIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN   79 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~--Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~   79 (446)
                      ++.++...|+||.+.+..  ++....|||.||..|+.++    ..||+||.++..
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            445567889999998853  2334457999999999864    589999998753

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.87  E-value=3.9e-06  Score=79.21  Aligned_cols=60  Identities=17%  Similarity=0.298  Sum_probs=47.9

Q ss_pred             CCCceecccccCcCcCccccccccceeccCcccCC------CCCCC--CCCCCcc---ccchHHHHHhhhc
Q psy17006         33 LASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL------SCCST--CRGPLGN---IRNLAMEKVAETV   92 (446)
Q Consensus        33 l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~------~~CP~--Cr~~~~~---~~~~~~e~~~~~l   92 (446)
                      ....+.||||++++.+||..-.|||.||+.|+.+.      ..||+  |++.+..   .+|..+.+++..+
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~  248 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA  248 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred             CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence            45779999999999999943357999999999863      26999  9997752   4788888877654

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=97.86  E-value=4.7e-06  Score=59.51  Aligned_cols=43  Identities=26%  Similarity=0.678  Sum_probs=34.5

Q ss_pred             CceecccccCcCcC----ccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         35 SLFECPVCFDYVLP----PIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        35 ~~l~C~iC~~~l~~----Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      +...|+||.+.+.+    ++ .-.|||.||..|+.++    ..||+||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAH-VLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEE-ECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeE-ecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            45789999999965    43 3456999999999875    68999998764

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=1.1e-05  Score=60.67  Aligned_cols=45  Identities=20%  Similarity=0.501  Sum_probs=38.6

Q ss_pred             CCceecccccCcCcCccccccccce-eccCcccCCCCCCCCCCCCcc
Q psy17006         34 ASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCSTCRGPLGN   79 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~CP~Cr~~~~~   79 (446)
                      .+...|+||.+...++++ -.|||. +|..|......||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKYFQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence            356789999999999973 345999 999999999999999998863

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=97.76  E-value=2.5e-06  Score=66.37  Aligned_cols=47  Identities=28%  Similarity=0.756  Sum_probs=40.3

Q ss_pred             cCCCCceecccccCcCcCccccccccce-eccCcccCCCCCCCCCCCCc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCSTCRGPLG   78 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~CP~Cr~~~~   78 (446)
                      +++.+...|+||.+...+|++ -.|||. ||..|..++..||+||.++.
T Consensus        13 ~~l~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~~CP~Cr~~i~   60 (79)
T 2yho_A           13 RKLKEAMLCMVCCEEEINSTF-CPCGHTVCCESCAAQLQSCPVCRSRVE   60 (79)
T ss_dssp             HHHHHHTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTCSBCTTTCCBCC
T ss_pred             HcCCCCCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhcCcCCCCCchhh
Confidence            345567789999999999984 356999 99999999999999999886

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=97.71  E-value=7.3e-06  Score=65.33  Aligned_cols=48  Identities=17%  Similarity=0.425  Sum_probs=37.8

Q ss_pred             ccCCCCceecccccCcCcC---ccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         30 STDLASLFECPVCFDYVLP---PIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~---Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      .....+...|+||.+.+..   ++ ...|||.||..|+.++    ..||+||.++.
T Consensus        34 ~~~~~~~~~C~IC~~~~~~~~~~~-~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           34 HGAVGQEMCCPICCSEYVKGDVAT-ELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             CSSSSSCSEETTTTEECCTTCEEE-EETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             ccccCCCCCCcccChhhcCCCcEE-ecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            3445678899999998876   43 4457999999999864    58999998774

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.65  E-value=5.2e-06  Score=70.35  Aligned_cols=44  Identities=30%  Similarity=0.780  Sum_probs=37.1

Q ss_pred             CCceecccccCcCcCc-------cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         34 ASLFECPVCFDYVLPP-------IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~P-------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      .+.+.|+||++.+.+|       + ...|||.||..|+.++    ..||+||+++.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   59 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKIN   59 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEE-EETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred             CCCCCCcccChhhhCccccccCeE-ecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence            3568999999999988       5 4567999999999764    58999999875

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.50  E-value=2.1e-05  Score=78.00  Aligned_cols=47  Identities=36%  Similarity=0.814  Sum_probs=40.9

Q ss_pred             CCCCceecccccCcCcCccccccccce-eccCcccCCCCCCCCCCCCcc
Q psy17006         32 DLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCSTCRGPLGN   79 (446)
Q Consensus        32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~CP~Cr~~~~~   79 (446)
                      .+.+.+.|+||.+.+.+|++ -.|||. ||..|+.++..||+||.++..
T Consensus       291 ~l~~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~~~CP~CR~~i~~  338 (345)
T 3t6p_A          291 RLQEERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSLRKCPICRGIIKG  338 (345)
T ss_dssp             HHHTTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred             hCcCCCCCCccCCcCCceEE-cCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence            44577899999999999984 366999 999999999999999998863

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.40  E-value=1.7e-05  Score=58.78  Aligned_cols=45  Identities=27%  Similarity=0.603  Sum_probs=36.5

Q ss_pred             CceecccccCcCcCccc-cccccce-eccCcccCCC----CCCCCCCCCcc
Q psy17006         35 SLFECPVCFDYVLPPII-QCQSGHL-VCSNCRPKLS----CCSTCRGPLGN   79 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~----~CP~Cr~~~~~   79 (446)
                      ....|+||.+-..++++ .-.|||. +|..|..++.    .||+||+++..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            45679999999999863 2356998 9999998764    89999998863

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.37  E-value=2.8e-05  Score=64.42  Aligned_cols=44  Identities=16%  Similarity=0.370  Sum_probs=33.9

Q ss_pred             CceecccccCcCcCccc-----------------cccccceeccCcccCC---------CCCCCCCCCCc
Q psy17006         35 SLFECPVCFDYVLPPII-----------------QCQSGHLVCSNCRPKL---------SCCSTCRGPLG   78 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~-----------------qC~~GH~~C~~C~~~~---------~~CP~Cr~~~~   78 (446)
                      +...|+||++.|..|..                 .-.|||.||..|+.++         ..||+||..+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            34589999999976530                 2346999999998753         37999999775

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.27  E-value=3e-05  Score=65.55  Aligned_cols=45  Identities=29%  Similarity=0.786  Sum_probs=37.4

Q ss_pred             CCceecccccCcCcCcc------ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         34 ASLFECPVCFDYVLPPI------IQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~Pv------~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      ++.+.|+||.+.+.+|+      ....|||.||..|+.++    ..||+||.++.
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~  124 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN  124 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence            46788999999998761      25677999999999864    68999999886

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.27  E-value=2.8e-05  Score=57.70  Aligned_cols=45  Identities=31%  Similarity=0.668  Sum_probs=36.6

Q ss_pred             CceecccccCcCcCcccc-ccccce-eccCcccCC----CCCCCCCCCCcc
Q psy17006         35 SLFECPVCFDYVLPPIIQ-CQSGHL-VCSNCRPKL----SCCSTCRGPLGN   79 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~q-C~~GH~-~C~~C~~~~----~~CP~Cr~~~~~   79 (446)
                      +...|+||.+...++++. -.|||. +|..|..++    ..||+||+++..
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            556899999999999742 256999 899999875    469999998863

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=97.24  E-value=8.1e-05  Score=74.49  Aligned_cols=46  Identities=22%  Similarity=0.476  Sum_probs=37.8

Q ss_pred             CCCceecccccCcCcCccccccccceeccCcccC-----CCCCCCCCCCCcc
Q psy17006         33 LASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCSTCRGPLGN   79 (446)
Q Consensus        33 l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-----~~~CP~Cr~~~~~   79 (446)
                      ......|+||.+.+.+|+ ...|||.||..|+..     ...||.||.++..
T Consensus       329 ~~~~~~C~ICle~~~~pv-~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          329 GSTFQLCKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             TTSSSBCTTTSSSBCCEE-EETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             cCCCCCCCccCcCCCCeE-EeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            344579999999999997 446799999999974     3689999998763

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.23  E-value=0.00012  Score=56.79  Aligned_cols=44  Identities=16%  Similarity=0.365  Sum_probs=33.7

Q ss_pred             CceecccccCcCcCc--------------cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         35 SLFECPVCFDYVLPP--------------IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        35 ~~l~C~iC~~~l~~P--------------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      +.-.|+||.+.+.++              +....|||.|+..|+.++    ..||+||.++.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            345699999998763              323347999999999863    58999999875

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.11  E-value=5.3e-05  Score=60.58  Aligned_cols=42  Identities=17%  Similarity=0.452  Sum_probs=33.3

Q ss_pred             CceecccccCcCcCccc-c-ccccceeccCcccCC------------CCCCC--CCCC
Q psy17006         35 SLFECPVCFDYVLPPII-Q-CQSGHLVCSNCRPKL------------SCCST--CRGP   76 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~-q-C~~GH~~C~~C~~~~------------~~CP~--Cr~~   76 (446)
                      +.+.|+||.+.+..|.. . -.|||.||..|+...            ..||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            46889999999988863 2 146999999998752            26999  9987

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=96.98  E-value=0.00014  Score=53.41  Aligned_cols=42  Identities=12%  Similarity=0.138  Sum_probs=36.3

Q ss_pred             ceecccccCcCcCccccc-cccceeccCcccCC----CCCCCCCCCCc
Q psy17006         36 LFECPVCFDYVLPPIIQC-QSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        36 ~l~C~iC~~~l~~Pv~qC-~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      .|.|||+++++.+|| .. .+||+|+..|+.++    ..||+.++++.
T Consensus         3 ~~~CpIs~~~m~dPV-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~   49 (61)
T 2bay_A            3 HMLCAISGKVPRRPV-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   49 (61)
T ss_dssp             -CCCTTTCSCCSSEE-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             eEEecCCCCCCCCCE-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence            488999999999998 44 67999999999975    57999999885

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.42  E-value=0.00034  Score=53.30  Aligned_cols=50  Identities=16%  Similarity=0.228  Sum_probs=24.4

Q ss_pred             ChhhHhh-hCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceecCccEEEE
Q psy17006        111 EKPEHED-ACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFL  164 (446)
Q Consensus       111 ~~~~H~~-~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~~c~~~f~  164 (446)
                      +|..|+. .|+++++.|+    .|+....+.+|..|...+-.+...|+.|+..|.
T Consensus         4 ~L~~H~~~~c~~r~~~C~----~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~   54 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQ----HCDLELSILKLKEHEDYCGARTELCGNCGRNVL   54 (75)
T ss_dssp             CCSCCCCCCCCCCCEECS----SSCCEECHHHHHHHHHHHHHCEEECSSSCCEEE
T ss_pred             HHHhhCcccCCCcccCCc----ccChHhhHHHHHHHHhHcCCCceEcccCCCcCc
Confidence            4445553 4555555554    255555555555555333334455555554433

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.41  E-value=0.0009  Score=50.92  Aligned_cols=52  Identities=23%  Similarity=0.377  Sum_probs=45.9

Q ss_pred             ccccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCC
Q psy17006         92 VTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHK  151 (446)
Q Consensus        92 l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~  151 (446)
                      ..+.|++    |...+...+|..|+..|+.+++.|+.    |+..+.+.+|..|++.+..
T Consensus        16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~c~~   67 (75)
T 2d9k_A           16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEVCGR   67 (75)
T ss_dssp             CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHHBTT
T ss_pred             cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHHccC
Confidence            4567775    99999999999999999999999994    9999999999999987653

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=96.36  E-value=0.00079  Score=55.09  Aligned_cols=43  Identities=12%  Similarity=0.306  Sum_probs=33.9

Q ss_pred             ceecccccCcCcCc-----------------cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         36 LFECPVCFDYVLPP-----------------IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        36 ~l~C~iC~~~l~~P-----------------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      .-.|+||.+.+..+                 +..-.|||.|+..|+.++    ..||+||.++.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            45799999999865                 222357999999999873    58999999864

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=96.13  E-value=0.0009  Score=55.73  Aligned_cols=42  Identities=12%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             eecccccCcCcCc-----------------cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         37 FECPVCFDYVLPP-----------------IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        37 l~C~iC~~~l~~P-----------------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      -.|+||.+.+..|                 +....|||.|+..|+.++    ..||+||.++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            4799999999764                 212357999999999874    58999999864

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=95.30  E-value=0.003  Score=50.43  Aligned_cols=79  Identities=20%  Similarity=0.385  Sum_probs=51.8

Q ss_pred             ecccccCcCcCccccccccceeccCcccC-----CCCCCCCCCCCccccchHHHHHhhhccccccccCCCCeeeecCCCh
Q psy17006         38 ECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK  112 (446)
Q Consensus        38 ~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-----~~~CP~Cr~~~~~~~~~~~e~~~~~l~v~C~~~~~GC~~~~~~~~~  112 (446)
                      -|++|..++..=...=+|.|.||..|...     ...||.|+.++..+....     .+-.+-|+. ..           
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~-----~~~if~C~~-~~-----------   65 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT-----RGSLFMCSI-VQ-----------   65 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE-----GGGCCCCCC-CC-----------
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec-----cCCEEECCC-CC-----------
Confidence            48999988865322224599999999953     468999999987543321     133455662 12           


Q ss_pred             hhHhhhCCCccccCCCCCCCCccc-cChhHHHHHHhhcCCC
Q psy17006        113 PEHEDACEYRPYHCPCPGASCKWS-GALDQVMGHLNQSHKT  152 (446)
Q Consensus       113 ~~H~~~C~~~~v~Cp~~~~~C~~~-~~~~~l~~H~~~~h~~  152 (446)
                                         +|... ...++|..|....|.+
T Consensus        66 -------------------~CkrtyLs~rdlqaHI~~~H~~   87 (101)
T 3vk6_A           66 -------------------GCKRTYLSQRDLQAHINHRHMR   87 (101)
T ss_dssp             -------------------CCCCCCSSHHHHHHHHHHHTTT
T ss_pred             -------------------CHHHHhcCHHHHHHHHHHHhhh
Confidence                               44444 2557888888888864

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=93.18  E-value=0.058  Score=47.65  Aligned_cols=53  Identities=21%  Similarity=0.425  Sum_probs=32.4

Q ss_pred             hcccCcccCCCCCeEeecC-CCchhHHhh-CCCCCccCCCCCCCcccc-cChhHHHHHhhhccC
Q psy17006        259 TVTFPCRYQMNGCNVVLLH-TEKPEHEDA-CEYRPYHCPCPGASCKWS-GALDQVMGHLNQSHK  319 (446)
Q Consensus       259 ~~~~~C~~~~~GC~~~~~~-~~l~~He~~-C~~~~~~Cp~~~~~C~~~-g~~~~l~~H~~~~H~  319 (446)
                      .-++.|+.    |+..+.. ..|..|+.. -.-.++.|+.    |+.. .....|..|++..+.
T Consensus       131 ~~~~~C~~----C~~~f~~~~~L~~H~~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~  186 (190)
T 2i13_A          131 EKPYKCPE----CGKSFSREDNLHTHQRTHTGEKPYKCPE----CGKSFSRRDALNVHQRTHTG  186 (190)
T ss_dssp             CCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHTTC--
T ss_pred             CCCeECCC----CCcccCCHHHHHHHHHhcCCCCCeECCC----CCCccCCHHHHHHHHHhcCC
Confidence            34455654    6665553 456677643 3456788884    8777 456689999876543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.76  E-value=0.46  Score=40.00  Aligned_cols=74  Identities=20%  Similarity=0.551  Sum_probs=46.8

Q ss_pred             CCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHH-hh-CCCCCccCCCCCCCcccc-cChhHHHHHh
Q psy17006        241 CRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHE-DA-CEYRPYHCPCPGASCKWS-GALDQVMGHL  314 (446)
Q Consensus       241 Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He-~~-C~~~~~~Cp~~~~~C~~~-g~~~~l~~H~  314 (446)
                      |...+.....  .|+..-...-++.|+.  .||+..+. ...|..|+ .. -.-.++.|+.++  |+.. .....|..|+
T Consensus        75 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~--C~~~f~~~~~L~~H~  150 (155)
T 2gli_A           75 CRKSYSRLENLKTHLRSHTGEKPYMCEH--EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPG--CTKRYTDPSSLRKHV  150 (155)
T ss_dssp             CCCCCSSHHHHHHHHHHTTTCCCEECCS--TTCCCEESSSSTTHHHHHHTTCSCCCEECCSTT--TCCEESSHHHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHcCCCCCeeCCC--CCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCC--CccccCCHHHHHHHH
Confidence            5555544322  2333223344566764  36888775 67888997 43 446788998653  8777 4566899999


Q ss_pred             hhcc
Q psy17006        315 NQSH  318 (446)
Q Consensus       315 ~~~H  318 (446)
                      +..|
T Consensus       151 ~~hh  154 (155)
T 2gli_A          151 KTVH  154 (155)
T ss_dssp             HHSC
T ss_pred             Hhhc
Confidence            8776

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.68  E-value=0.032  Score=41.44  Aligned_cols=27  Identities=22%  Similarity=0.584  Sum_probs=24.4

Q ss_pred             eccCcc-cccCcccCCCCCCCCCCCCCc
Q psy17006        221 CQSGHL-VCSNCRPKLSCCSTCRGPLGN  247 (446)
Q Consensus       221 C~~gh~-~C~~C~~~~~~Cp~Cr~~~~~  247 (446)
                      =|.||. +|..|..++..||.||.++..
T Consensus        31 ~pCgH~~~C~~C~~~~~~CP~CR~~i~~   58 (68)
T 2ea5_A           31 LPCRHTCLCDGCVKYFQQCPMCRQFVQE   58 (68)
T ss_dssp             TTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred             ECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence            378999 999999999999999999875

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=92.25  E-value=0.035  Score=41.81  Aligned_cols=26  Identities=27%  Similarity=0.705  Sum_probs=24.1

Q ss_pred             ccCcc-cccCcccCCCCCCCCCCCCCc
Q psy17006        222 QSGHL-VCSNCRPKLSCCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~-~C~~C~~~~~~Cp~Cr~~~~~  247 (446)
                      +.||. +|..|..++..||.||.++..
T Consensus        41 pCgH~~~C~~C~~~~~~CP~Cr~~i~~   67 (74)
T 4ic3_A           41 PCGHLVTCKQCAEAVDKCPMCYTVITF   67 (74)
T ss_dssp             TTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred             CCCChhHHHHhhhcCccCCCcCcCccC
Confidence            78999 999999999999999998875

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.18  E-value=0.1  Score=39.42  Aligned_cols=44  Identities=18%  Similarity=0.483  Sum_probs=34.5

Q ss_pred             CCceecccccCcCcCccccc-cccceeccCcccCC------CCCCCCCCCCc
Q psy17006         34 ASLFECPVCFDYVLPPIIQC-QSGHLVCSNCRPKL------SCCSTCRGPLG   78 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~Pv~qC-~~GH~~C~~C~~~~------~~CP~Cr~~~~   78 (446)
                      +..-.|+||.+++.+-+ .| .|+|.|=..|+.++      ..||.||.++.
T Consensus        13 ~~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SSSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            34567999999998544 66 57999888998752      58999999875

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.06  E-value=0.027  Score=42.55  Aligned_cols=26  Identities=27%  Similarity=0.705  Sum_probs=23.8

Q ss_pred             ccCcc-cccCcccCCCCCCCCCCCCCc
Q psy17006        222 QSGHL-VCSNCRPKLSCCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~-~C~~C~~~~~~Cp~Cr~~~~~  247 (446)
                      +.||. +|..|..++..||.||.++..
T Consensus        42 pCgH~~~C~~C~~~~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           42 PCGHLVTCKQCAEAVDKCPMCYTVITF   68 (75)
T ss_dssp             SSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred             cCCCHHHHHHHhhCCCCCccCCceecC
Confidence            77999 999999999999999998875

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=91.94  E-value=0.022  Score=43.63  Aligned_cols=30  Identities=30%  Similarity=0.834  Sum_probs=24.6

Q ss_pred             eeeeccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006        218 FTYCQSGHLVCSNCRPKL-----SCCSTCRGPLGN  247 (446)
Q Consensus       218 ~~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~  247 (446)
                      +..|+.||.+|..|..++     ..||.||.++..
T Consensus        28 ~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A           28 FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             ccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            455789999999998764     489999998874

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=91.55  E-value=0.047  Score=41.79  Aligned_cols=26  Identities=31%  Similarity=0.905  Sum_probs=24.0

Q ss_pred             ccCcc-cccCcccCCCCCCCCCCCCCc
Q psy17006        222 QSGHL-VCSNCRPKLSCCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~-~C~~C~~~~~~Cp~Cr~~~~~  247 (446)
                      |.||. +|..|..++..||.||.++..
T Consensus        35 pCgH~~~C~~C~~~~~~CP~Cr~~i~~   61 (79)
T 2yho_A           35 PCGHTVCCESCAAQLQSCPVCRSRVEH   61 (79)
T ss_dssp             TTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred             CCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence            78999 999999999999999998874

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.39  E-value=0.095  Score=40.24  Aligned_cols=44  Identities=25%  Similarity=0.550  Sum_probs=32.8

Q ss_pred             CceecccccCcCc--Ccc-ccccc---cceeccCcccCC------CCCCCCCCCCc
Q psy17006         35 SLFECPVCFDYVL--PPI-IQCQS---GHLVCSNCRPKL------SCCSTCRGPLG   78 (446)
Q Consensus        35 ~~l~C~iC~~~l~--~Pv-~qC~~---GH~~C~~C~~~~------~~CP~Cr~~~~   78 (446)
                      +...|.||++-+.  .|+ ..|.|   +|.|-..|+.++      ..||+||.++.
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            4467999997663  454 24544   499999999875      37999999875

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=91.08  E-value=0.12  Score=36.44  Aligned_cols=26  Identities=27%  Similarity=0.586  Sum_probs=22.2

Q ss_pred             ccCcccccCcccCC-CCCCCCCCCCCc
Q psy17006        222 QSGHLVCSNCRPKL-SCCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~~C~~C~~~~-~~Cp~Cr~~~~~  247 (446)
                      +.||++|..|..+. ..||.||.++..
T Consensus        23 ~CgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A           23 PCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             TTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             CCCCcccHHHHccCCCCCCcCCcEeec
Confidence            67999999999875 589999998764

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=90.56  E-value=0.048  Score=43.35  Aligned_cols=39  Identities=26%  Similarity=0.535  Sum_probs=29.7

Q ss_pred             ccCcccccCcccCC----CCCCCCCCCCCc---cccHHHHHHHhhc
Q psy17006        222 QSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETV  260 (446)
Q Consensus       222 ~~gh~~C~~C~~~~----~~Cp~Cr~~~~~---~r~~~~e~~c~~~  260 (446)
                      ++||++|..|..+.    ..||.||.++..   .+|..++++...+
T Consensus        40 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~   85 (99)
T 2y43_A           40 QCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSL   85 (99)
T ss_dssp             TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred             CCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence            68999999998752    589999998873   3567776665544

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=90.20  E-value=0.077  Score=51.87  Aligned_cols=45  Identities=24%  Similarity=0.690  Sum_probs=36.3

Q ss_pred             CCceecccccCcCcC----ccccc---cccceeccCcccCC---------------CCCCCCCCCCc
Q psy17006         34 ASLFECPVCFDYVLP----PIIQC---QSGHLVCSNCRPKL---------------SCCSTCRGPLG   78 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~----Pv~qC---~~GH~~C~~C~~~~---------------~~CP~Cr~~~~   78 (446)
                      +..-+|+||...+.+    |-..|   .|||.|=+.|+.++               ..||.||.+++
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            466789999999976    65556   37999999999763               36999999886

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=90.01  E-value=0.18  Score=41.37  Aligned_cols=38  Identities=24%  Similarity=0.494  Sum_probs=28.6

Q ss_pred             eccCcccccCcccCC--CCCCCCCCCCCc---cccHHHHHHHh
Q psy17006        221 CQSGHLVCSNCRPKL--SCCSTCRGPLGN---IRNLAMEKVAE  258 (446)
Q Consensus       221 C~~gh~~C~~C~~~~--~~Cp~Cr~~~~~---~r~~~~e~~c~  258 (446)
                      .++||++|..|..+.  ..||.||.++..   ..|..+.++..
T Consensus        39 ~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~   81 (117)
T 1jm7_B           39 GGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQ   81 (117)
T ss_dssp             CSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHH
Confidence            378999999999885  589999998853   34666655444

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=90.01  E-value=0.068  Score=41.73  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=32.3

Q ss_pred             ec-cCcccccCcccCC------CCCCCCCCCCC----ccccHHHHHHHhhcccCcc
Q psy17006        221 CQ-SGHLVCSNCRPKL------SCCSTCRGPLG----NIRNLAMEKVAETVTFPCR  265 (446)
Q Consensus       221 C~-~gh~~C~~C~~~~------~~Cp~Cr~~~~----~~r~~~~e~~c~~~~~~C~  265 (446)
                      -+ +||++|..|..+.      ..||.||.++.    ...|..++++...+.-.-.
T Consensus        29 ~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~   84 (92)
T 3ztg_A           29 IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG   84 (92)
T ss_dssp             CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence            36 7999999998652      48999999973    3456777776666554433

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=89.49  E-value=0.092  Score=41.85  Aligned_cols=32  Identities=16%  Similarity=0.392  Sum_probs=26.2

Q ss_pred             CceecccccC-cCcCccccc-cccceeccCcccC
Q psy17006         35 SLFECPVCFD-YVLPPIIQC-QSGHLVCSNCRPK   66 (446)
Q Consensus        35 ~~l~C~iC~~-~l~~Pv~qC-~~GH~~C~~C~~~   66 (446)
                      +.+.|+||.+ +..+|+..| .|||.||..|+..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~   35 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA   35 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence            4588999996 578888665 4699999999985

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=89.07  E-value=0.072  Score=42.45  Aligned_cols=64  Identities=22%  Similarity=0.496  Sum_probs=42.8

Q ss_pred             ccCcccccCccc-----CCCCCCCCCCCCCccccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCccCCC
Q psy17006        222 QSGHLVCSNCRP-----KLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPC  296 (446)
Q Consensus       222 ~~gh~~C~~C~~-----~~~~Cp~Cr~~~~~~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp~  296 (446)
                      |..|++|-+|..     +...||.|+.++..+....+     .-.+-|+.                             .
T Consensus        19 PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~-----~~if~C~~-----------------------------~   64 (101)
T 3vk6_A           19 PCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR-----GSLFMCSI-----------------------------V   64 (101)
T ss_dssp             TTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG-----GGCCCCCC-----------------------------C
T ss_pred             cccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEecc-----CCEEECCC-----------------------------C
Confidence            789999999984     34689999999987433211     23344442                             1


Q ss_pred             CCCCcccc-cChhHHHHHhhhccCcc
Q psy17006        297 PGASCKWS-GALDQVMGHLNQSHKTI  321 (446)
Q Consensus       297 ~~~~C~~~-g~~~~l~~H~~~~H~~~  321 (446)
                        .+|+-. -+..+|+.|+...|...
T Consensus        65 --~~CkrtyLs~rdlqaHI~~~H~~~   88 (101)
T 3vk6_A           65 --QGCKRTYLSQRDLQAHINHRHMRA   88 (101)
T ss_dssp             --CCCCCCCSSHHHHHHHHHHHTTTS
T ss_pred             --CCHHHHhcCHHHHHHHHHHHhhhc
Confidence              135444 46778999999998753

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=88.60  E-value=0.17  Score=41.80  Aligned_cols=39  Identities=28%  Similarity=0.556  Sum_probs=28.8

Q ss_pred             eccCcccccCcccCC-----CCCCCCCCCCCc----cccHHHHHHHhh
Q psy17006        221 CQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAET  259 (446)
Q Consensus       221 C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~----~r~~~~e~~c~~  259 (446)
                      -++||++|..|..+.     ..||.||.++..    ..|..+.++...
T Consensus        68 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~  115 (124)
T 3fl2_A           68 TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQ  115 (124)
T ss_dssp             CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHH
T ss_pred             eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence            378999999998652     489999999865    346666655543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=88.39  E-value=0.71  Score=40.40  Aligned_cols=47  Identities=23%  Similarity=0.517  Sum_probs=26.9

Q ss_pred             CCeEeecC-CCchhHHhhCCCCCccCCCCCCCcccccC-hhHHHHHhhhccC
Q psy17006        270 GCNVVLLH-TEKPEHEDACEYRPYHCPCPGASCKWSGA-LDQVMGHLNQSHK  319 (446)
Q Consensus       270 GC~~~~~~-~~l~~He~~C~~~~~~Cp~~~~~C~~~g~-~~~l~~H~~~~H~  319 (446)
                      +|+..+.. ..|..|+..-  ..+.|+... .|+.... ...|..|++..|.
T Consensus       141 ~C~k~F~~~~~L~~H~~~H--~~~~C~~~~-~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          141 GCDKRFSLPSRLKRHEKVH--AGYPCKKDD-SCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             SCCCBCSSHHHHHHHHTSS--CSCCCCSTT-TCCCCCSCHHHHHHHHTTCC-
T ss_pred             CCCchhcCHHHHHHHHHHh--CCCcCCCCC-cCCCccccHHHHHHHHHhhcC
Confidence            45554442 4566676532  226676432 3776654 5679999887664

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=88.32  E-value=0.07  Score=38.78  Aligned_cols=27  Identities=33%  Similarity=0.795  Sum_probs=22.4

Q ss_pred             eccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006        221 CQSGHLVCSNCRPKL-----SCCSTCRGPLGN  247 (446)
Q Consensus       221 C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~  247 (446)
                      -+.||++|..|..+.     ..||.||.++..
T Consensus        24 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A           24 NVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            378999999998764     479999998864

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=88.21  E-value=0.14  Score=38.46  Aligned_cols=27  Identities=26%  Similarity=0.570  Sum_probs=22.2

Q ss_pred             eccCcccccCcccC-----------CCCCCCCCCCCCc
Q psy17006        221 CQSGHLVCSNCRPK-----------LSCCSTCRGPLGN  247 (446)
Q Consensus       221 C~~gh~~C~~C~~~-----------~~~Cp~Cr~~~~~  247 (446)
                      -+.||++|..|..+           ...||.||.++..
T Consensus        28 l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           28 LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            47899999999875           2479999998864

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=87.55  E-value=0.042  Score=40.07  Aligned_cols=26  Identities=31%  Similarity=0.885  Sum_probs=22.5

Q ss_pred             ccCcc-cccCcccCCC----CCCCCCCCCCc
Q psy17006        222 QSGHL-VCSNCRPKLS----CCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~-~C~~C~~~~~----~Cp~Cr~~~~~  247 (446)
                      |.||. +|..|..++.    .||.||.++..
T Consensus        26 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B           26 RTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             TEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             CCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            78998 8999998864    89999999864

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.21  E-value=0.3  Score=35.00  Aligned_cols=42  Identities=14%  Similarity=0.135  Sum_probs=25.4

Q ss_pred             hCCCccccCCCCCCCCccccChhHHHHHHhhcCC-Ccceec-CccEEEE
Q psy17006        118 ACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHK-TITTLQ-GEDIVFL  164 (446)
Q Consensus       118 ~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~-~~~~c~-~c~~~f~  164 (446)
                      .|+.+++.|+    .|+......+|..|+.. .. ....|+ .|+..|.
T Consensus         5 ~C~~~~~~C~----~C~k~f~~~~L~~H~~~-~~~~p~~C~~~C~k~f~   48 (66)
T 2eod_A            5 SSGKRTQPCT----YCTKEFVFDTIQSHQYQ-CPRLPVACPNQCGVGTV   48 (66)
T ss_dssp             CCCCCEEECS----SSCCEEEHHHHHHHHHH-CSSSEEECTTCCSCCEE
T ss_pred             cCCCCCeecc----ccCCccCHHHHHHHHHH-cCCcCccCCcccCcccc
Confidence            5667777776    36665556667777666 32 445666 6665443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=86.92  E-value=0.85  Score=36.52  Aligned_cols=104  Identities=23%  Similarity=0.365  Sum_probs=47.1

Q ss_pred             CceecccccCcCcCcc-ccccccceeccCcccCCCCCCCCCCCCccccchHHHHH-----hhhccccccccCCCCeeeec
Q psy17006         35 SLFECPVCFDYVLPPI-IQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKV-----AETVTFPCRYQMNGCNVVLL  108 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv-~qC~~GH~~C~~C~~~~~~CP~Cr~~~~~~~~~~~e~~-----~~~l~v~C~~~~~GC~~~~~  108 (446)
                      ..+.|++|...+.... +.   -|.- ..-..+.-.|+.|...+....++..-..     .....+.|+.    |+..+.
T Consensus         6 ~~~~C~~C~~~f~~~~~l~---~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~   77 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLK---VHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFR   77 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHH---HHHH-HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEES
T ss_pred             CCCCCCCCCCcCCCHHHHH---HHHH-hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccC
Confidence            3467777777766542 11   1210 0001223467777665543222111111     1223445554    655544


Q ss_pred             C-CChhhHhhh-CCCccccCCCCCCCCcccc-ChhHHHHHHhhcC
Q psy17006        109 H-TEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSH  150 (446)
Q Consensus       109 ~-~~~~~H~~~-C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h  150 (446)
                      . ..|..|+.. -.-+++.|+    .|+... ...+|..|+...|
T Consensus        78 ~~~~l~~H~~~h~~~~~~~C~----~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           78 RRMELRLHMVSHTGEMPYKCS----SCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             SHHHHHHHHHHHSSSCSEECS----SSCCEESSHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHcCCCCCccCC----CccchhCCHHHHHHHHHHHC
Confidence            3 445556532 223455565    355553 3355666665555

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=86.54  E-value=0.15  Score=41.10  Aligned_cols=38  Identities=13%  Similarity=0.429  Sum_probs=28.3

Q ss_pred             ccCcccccCcccCC----CCCCCCCCCCCcc-------ccHHHHHHHhh
Q psy17006        222 QSGHLVCSNCRPKL----SCCSTCRGPLGNI-------RNLAMEKVAET  259 (446)
Q Consensus       222 ~~gh~~C~~C~~~~----~~Cp~Cr~~~~~~-------r~~~~e~~c~~  259 (446)
                      ++||++|..|..+.    ..||.||.++...       .|..+.++...
T Consensus        33 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~   81 (108)
T 2ckl_A           33 ECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYK   81 (108)
T ss_dssp             TTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHH
Confidence            78999999998763    5899999988742       35555555544

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=86.50  E-value=0.14  Score=35.51  Aligned_cols=25  Identities=32%  Similarity=0.810  Sum_probs=21.2

Q ss_pred             ccCcccccCcccCC----CCCCCCCCCCC
Q psy17006        222 QSGHLVCSNCRPKL----SCCSTCRGPLG  246 (446)
Q Consensus       222 ~~gh~~C~~C~~~~----~~Cp~Cr~~~~  246 (446)
                      +.||++|..|..+.    ..||.||.++.
T Consensus        26 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A           26 PCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             TTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            56999999999863    58999998875

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=86.39  E-value=0.13  Score=43.49  Aligned_cols=28  Identities=25%  Similarity=0.536  Sum_probs=22.9

Q ss_pred             eeccCcccccCcccC----CCCCCCCCCCCCc
Q psy17006        220 YCQSGHLVCSNCRPK----LSCCSTCRGPLGN  247 (446)
Q Consensus       220 ~C~~gh~~C~~C~~~----~~~Cp~Cr~~~~~  247 (446)
                      .-++||.+|..|..+    ...||.||.++..
T Consensus        68 ~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           68 TLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            347899999999775    2589999999864

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=86.35  E-value=0.17  Score=43.72  Aligned_cols=40  Identities=25%  Similarity=0.537  Sum_probs=30.5

Q ss_pred             eccCcccccCcccCC-----CCCCCCCCCCCcc----ccHHHHHHHhhc
Q psy17006        221 CQSGHLVCSNCRPKL-----SCCSTCRGPLGNI----RNLAMEKVAETV  260 (446)
Q Consensus       221 C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~~----r~~~~e~~c~~~  260 (446)
                      -++||++|..|..+.     ..||.||.++...    .|..+.+++..+
T Consensus        94 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~  142 (150)
T 1z6u_A           94 TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLF  142 (150)
T ss_dssp             CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHH
T ss_pred             cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence            478999999998763     3799999998753    567777666544

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=85.94  E-value=0.12  Score=41.29  Aligned_cols=27  Identities=30%  Similarity=0.711  Sum_probs=22.3

Q ss_pred             eccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006        221 CQSGHLVCSNCRPKL-----SCCSTCRGPLGN  247 (446)
Q Consensus       221 C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~  247 (446)
                      =++||++|..|..+.     ..||.||.++..
T Consensus        39 ~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           39 PHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             TTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            367999999998762     489999999863

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.71  E-value=0.12  Score=37.65  Aligned_cols=28  Identities=32%  Similarity=0.819  Sum_probs=22.8

Q ss_pred             eeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006        220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      .-+.||++|..|..+.    ..||.||.++..
T Consensus        37 ~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           37 STECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             ECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             eCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            3467999999999763    589999998763

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.66  E-value=0.12  Score=38.34  Aligned_cols=26  Identities=23%  Similarity=0.699  Sum_probs=21.7

Q ss_pred             ccCcccccCcccCC-------CCCCCCCCCCCc
Q psy17006        222 QSGHLVCSNCRPKL-------SCCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~~C~~C~~~~-------~~Cp~Cr~~~~~  247 (446)
                      +.||++|..|..+.       ..||.||.++..
T Consensus        37 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           37 DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            78999999998753       279999998764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=85.64  E-value=0.17  Score=36.82  Aligned_cols=26  Identities=23%  Similarity=0.611  Sum_probs=22.0

Q ss_pred             ccCcccccCcccC----CCCCCCCCCCCCc
Q psy17006        222 QSGHLVCSNCRPK----LSCCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~~C~~C~~~----~~~Cp~Cr~~~~~  247 (446)
                      +.||.+|..|..+    ...||.||.++..
T Consensus        23 ~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A           23 PCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            6799999999876    3689999998874

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.62  E-value=0.24  Score=37.56  Aligned_cols=27  Identities=30%  Similarity=0.643  Sum_probs=22.3

Q ss_pred             eccCcccccCcccC----------CCCCCCCCCCCCc
Q psy17006        221 CQSGHLVCSNCRPK----------LSCCSTCRGPLGN  247 (446)
Q Consensus       221 C~~gh~~C~~C~~~----------~~~Cp~Cr~~~~~  247 (446)
                      -++||++|..|..+          ...||.||.++..
T Consensus        35 ~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           35 LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            37899999999865          3589999998873

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=85.49  E-value=0.23  Score=37.25  Aligned_cols=27  Identities=26%  Similarity=0.572  Sum_probs=22.4

Q ss_pred             eccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006        221 CQSGHLVCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       221 C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      -+.||++|..|..+.    ..||.||.++..
T Consensus        34 ~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           34 LPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             CTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             eCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            367999999999752    589999998864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.38  E-value=0.15  Score=37.85  Aligned_cols=26  Identities=19%  Similarity=0.515  Sum_probs=22.2

Q ss_pred             ccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006        222 QSGHLVCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      +.||++|..|..+.    ..||.||.++..
T Consensus        33 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (72)
T 2djb_A           33 ECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ   62 (72)
T ss_dssp             SSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred             CCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence            68999999998763    589999998875

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=85.35  E-value=0.12  Score=37.96  Aligned_cols=29  Identities=31%  Similarity=0.791  Sum_probs=23.6

Q ss_pred             eeeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006        219 TYCQSGHLVCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       219 ~~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      ..-+.||++|..|..+.    ..||.||.++..
T Consensus        31 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A           31 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             EeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            34578999999999763    589999998874

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=85.13  E-value=0.25  Score=34.23  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=20.2

Q ss_pred             cCcccccCcccCC----CCCCCCCCCCC
Q psy17006        223 SGHLVCSNCRPKL----SCCSTCRGPLG  246 (446)
Q Consensus       223 ~gh~~C~~C~~~~----~~Cp~Cr~~~~  246 (446)
                      .||.+|..|..+.    ..||.||.++.
T Consensus        27 C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A           27 CGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            7999999998763    58999998864

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=84.46  E-value=0.48  Score=36.23  Aligned_cols=76  Identities=18%  Similarity=0.416  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhhCCC---CCccCCCCCCCccccc-ChhH
Q psy17006        237 CCSTCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDACEY---RPYHCPCPGASCKWSG-ALDQ  309 (446)
Q Consensus       237 ~Cp~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~C~~---~~~~Cp~~~~~C~~~g-~~~~  309 (446)
                      .|+.|...+.....  .|+..--..-++.|+.    |...+. ...|..|+..-.-   .++.|+.    |+... ....
T Consensus         9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~----C~~~f~~~~~   80 (95)
T 2yt9_A            9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQS----CGKGFSRPDH   80 (95)
T ss_dssp             ECSSSCCEESSSHHHHHHHHHSCSSCSEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCSS----SCCCBSSHHH
T ss_pred             ECCCCCCccCChHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECCC----ccchhCCHHH
Confidence            57778777765443  3333222345577876    888776 4678889865433   7889985    87774 5668


Q ss_pred             HHHHhhhccCc
Q psy17006        310 VMGHLNQSHKT  320 (446)
Q Consensus       310 l~~H~~~~H~~  320 (446)
                      |..|++..|..
T Consensus        81 L~~H~~~~H~~   91 (95)
T 2yt9_A           81 LNGHIKQVHSG   91 (95)
T ss_dssp             HHHHHHHTSCC
T ss_pred             HHHHHHHhcCC
Confidence            99999988864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=84.45  E-value=0.13  Score=38.71  Aligned_cols=38  Identities=13%  Similarity=0.216  Sum_probs=27.1

Q ss_pred             eccCcccccCcccC-----CCCCCCCCCCCCc---cccHHHHHHHh
Q psy17006        221 CQSGHLVCSNCRPK-----LSCCSTCRGPLGN---IRNLAMEKVAE  258 (446)
Q Consensus       221 C~~gh~~C~~C~~~-----~~~Cp~Cr~~~~~---~r~~~~e~~c~  258 (446)
                      -++||++|..|..+     ...||.||.++..   ..|..+.++..
T Consensus        24 ~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~   69 (78)
T 1t1h_A           24 VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIA   69 (78)
T ss_dssp             ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHH
T ss_pred             cCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHH
Confidence            47899999999865     2479999998863   23555554443

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=83.79  E-value=2.3  Score=35.55  Aligned_cols=113  Identities=13%  Similarity=0.243  Sum_probs=65.6

Q ss_pred             CCCCceecccccCcCcCcc-ccc-cc-ccee-----ccCcccCCCCCCCCCCCCccccchH--HHHHhhhccccccccCC
Q psy17006         32 DLASLFECPVCFDYVLPPI-IQC-QS-GHLV-----CSNCRPKLSCCSTCRGPLGNIRNLA--MEKVAETVTFPCRYQMN  101 (446)
Q Consensus        32 ~l~~~l~C~iC~~~l~~Pv-~qC-~~-GH~~-----C~~C~~~~~~CP~Cr~~~~~~~~~~--~e~~~~~l~v~C~~~~~  101 (446)
                      +-...+.|++|...+.... +.- .. -|..     ...|  ....|+.|...+....++.  ++.-...-.+.|+.  .
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~--~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~   96 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC--YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF--P   96 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCC--CBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC--T
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccc--cccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc--C
Confidence            3345689999999997653 110 00 0110     0001  0147999988775432211  12222345677874  3


Q ss_pred             CCeeeecC-CChhhHhhhC-CCccccCCCCCCCCcccc-ChhHHHHHHhhcC
Q psy17006        102 GCNVVLLH-TEKPEHEDAC-EYRPYHCPCPGASCKWSG-ALDQVMGHLNQSH  150 (446)
Q Consensus       102 GC~~~~~~-~~~~~H~~~C-~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h  150 (446)
                      +|+..+.. ..|..|+..- .-+++.|+.+  +|+... ...+|..|++..+
T Consensus        97 ~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~  146 (155)
T 2rpc_A           97 GCGKIFARSENLKIHKRTHTGEKPFKCEFE--GCDRRFANSSDRKKHMHVHT  146 (155)
T ss_dssp             TTCCEESCHHHHHHHHTTTCSSCSBCCSST--TCCCCBSSHHHHHHSSTTTT
T ss_pred             CCCCccCCHHHHHHHHHhhCCCCCccCCCC--CCCCccCCHHHHHHHHHHhc
Confidence            79887764 6778898532 3457888753  587775 4578889987543

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.63  E-value=0.47  Score=33.93  Aligned_cols=51  Identities=31%  Similarity=0.660  Sum_probs=35.5

Q ss_pred             cccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCcccc-ChhHHHHHHhhcC
Q psy17006         93 TFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSH  150 (446)
Q Consensus        93 ~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h  150 (446)
                      ++.|+.    |+..+....|..|+..+.-+++.|++   .|+... .+.+|..|+...+
T Consensus        10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~---~C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A           10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPN---QCGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTT---CCSCCEEETTTHHHHHHTTS
T ss_pred             Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCc---ccCcccccHHHHHHHHHhhc
Confidence            455664    77666666778888667778888873   387763 4568888887543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=83.41  E-value=0.2  Score=35.83  Aligned_cols=29  Identities=31%  Similarity=0.791  Sum_probs=23.9

Q ss_pred             eeeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006        219 TYCQSGHLVCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       219 ~~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      ..-+.||++|..|..+.    ..||.||.++..
T Consensus        24 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A           24 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             EEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             EeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            45578999999999763    589999998874

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.36  E-value=0.27  Score=36.28  Aligned_cols=28  Identities=21%  Similarity=0.507  Sum_probs=23.0

Q ss_pred             eeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006        220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      .-+.||++|..|..+.    ..||.||.++..
T Consensus        30 ~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           30 SLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             EETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             EccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            3478999999998763    589999998874

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.10  E-value=0.24  Score=36.93  Aligned_cols=28  Identities=25%  Similarity=0.514  Sum_probs=22.8

Q ss_pred             eeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006        220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      .-+.||++|..|..+.    ..||.||.++..
T Consensus        41 ~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           41 VLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             EETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             EECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            3467999999998763    589999998864

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.82  E-value=0.34  Score=35.07  Aligned_cols=27  Identities=22%  Similarity=0.693  Sum_probs=22.2

Q ss_pred             eccCcccccCcccC-----CCCCCCCCCCCCc
Q psy17006        221 CQSGHLVCSNCRPK-----LSCCSTCRGPLGN  247 (446)
Q Consensus       221 C~~gh~~C~~C~~~-----~~~Cp~Cr~~~~~  247 (446)
                      -+.||++|..|..+     ...||.||.++..
T Consensus        31 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           31 TECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            37899999999874     2479999998864

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=82.74  E-value=0.24  Score=37.48  Aligned_cols=28  Identities=25%  Similarity=0.552  Sum_probs=22.7

Q ss_pred             eeccCcccccCcccC----------CCCCCCCCCCCCc
Q psy17006        220 YCQSGHLVCSNCRPK----------LSCCSTCRGPLGN  247 (446)
Q Consensus       220 ~C~~gh~~C~~C~~~----------~~~Cp~Cr~~~~~  247 (446)
                      .-++||++|..|..+          ...||.||.++..
T Consensus        34 ~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           34 SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            457899999999865          3479999998864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.65  E-value=0.17  Score=38.76  Aligned_cols=27  Identities=30%  Similarity=0.632  Sum_probs=22.1

Q ss_pred             eccCcccccCcccCC-------CCCCCCCCCCCc
Q psy17006        221 CQSGHLVCSNCRPKL-------SCCSTCRGPLGN  247 (446)
Q Consensus       221 C~~gh~~C~~C~~~~-------~~Cp~Cr~~~~~  247 (446)
                      -++||++|..|..+.       ..||.||.++..
T Consensus        35 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           35 LHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             CCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            367999999998763       479999998764

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=82.51  E-value=0.09  Score=38.37  Aligned_cols=26  Identities=42%  Similarity=0.995  Sum_probs=21.9

Q ss_pred             ccCcc-cccCcccCC----CCCCCCCCCCCc
Q psy17006        222 QSGHL-VCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~-~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      |.||. +|..|..++    ..||.||.++..
T Consensus        27 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A           27 KTGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             TEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            78999 899998875    369999999864

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=81.86  E-value=0.51  Score=46.43  Aligned_cols=27  Identities=44%  Similarity=1.043  Sum_probs=24.7

Q ss_pred             eccCcc-cccCcccCCCCCCCCCCCCCc
Q psy17006        221 CQSGHL-VCSNCRPKLSCCSTCRGPLGN  247 (446)
Q Consensus       221 C~~gh~-~C~~C~~~~~~Cp~Cr~~~~~  247 (446)
                      =|+||. +|..|..++..||.||.++..
T Consensus       311 lpCgH~~fC~~C~~~~~~CP~CR~~i~~  338 (345)
T 3t6p_A          311 IPCGHLVVCQECAPSLRKCPICRGIIKG  338 (345)
T ss_dssp             ETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred             cCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence            389999 999999999999999999874

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.24  E-value=0.2  Score=38.05  Aligned_cols=26  Identities=27%  Similarity=0.731  Sum_probs=22.2

Q ss_pred             eccCcccccCcccCC----CCCCCCCCCCC
Q psy17006        221 CQSGHLVCSNCRPKL----SCCSTCRGPLG  246 (446)
Q Consensus       221 C~~gh~~C~~C~~~~----~~Cp~Cr~~~~  246 (446)
                      -+.||++|..|..+.    ..||.||.++.
T Consensus        31 ~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           31 TKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            478999999998763    58999999986

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=80.88  E-value=0.39  Score=39.00  Aligned_cols=26  Identities=27%  Similarity=0.781  Sum_probs=22.1

Q ss_pred             ccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006        222 QSGHLVCSNCRPKL-----SCCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~  247 (446)
                      ++||++|..|..+.     ..||.||.++..
T Consensus        32 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           32 PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            78999999998774     379999998863

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=80.77  E-value=0.22  Score=36.41  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=22.8

Q ss_pred             eeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006        220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGN  247 (446)
Q Consensus       220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~  247 (446)
                      .-+.||++|..|..+.    ..||.||.++..
T Consensus        32 ~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           32 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             ECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             EeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            3467999999998763    589999998764

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=80.27  E-value=0.41  Score=41.64  Aligned_cols=41  Identities=20%  Similarity=0.402  Sum_probs=30.5

Q ss_pred             eccCcccccCcccCC-----CCCCCCCCCCCcc----ccHHHHHHHhhcc
Q psy17006        221 CQSGHLVCSNCRPKL-----SCCSTCRGPLGNI----RNLAMEKVAETVT  261 (446)
Q Consensus       221 C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~~----r~~~~e~~c~~~~  261 (446)
                      -++||++|..|..+.     ..||.||.++...    .+..++++...+.
T Consensus        71 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~  120 (165)
T 2ckl_B           71 KECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY  120 (165)
T ss_dssp             TTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred             CCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence            389999999998763     4799999998532    3566776666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	446
d1k2fa_	190	b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous	1e-68
d1k2fa_	190	b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous	7e-42

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  214 bits (547), Expect = 1e-68
 Identities = 150/187 (80%), Positives = 164/187 (87%), Gaps = 1/187 (0%)

Query: 259 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 318
           +V FPC+Y  +GC + L HTEK EHE+ CE+RPY CPCPGASCKW G+LD VM HL   H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60

Query: 319 KTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLI 377
           K+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLI
Sbjct: 61  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120

Query: 378 GSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKN 437
           G+RKQAE+F YRLELNGHRRRLTWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N N
Sbjct: 121 GTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGN 180

Query: 438 LGINVTI 444
           LGINVTI
Sbjct: 181 LGINVTI 187

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  144 bits (365), Expect = 7e-42
 Identities = 99/131 (75%), Positives = 109/131 (83%), Gaps = 1/131 (0%)

Query: 91  TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 150
           +V FPC+Y  +GC + L HTEK EHE+ CE+RPY CPCPGASCKW G+LD VM HL   H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60

Query: 151 KTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLI 209
           K+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLI
Sbjct: 61  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120

Query: 210 GSRKQAEHFTY 220
           G+RKQAE+F Y
Sbjct: 121 GTRKQAENFAY 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	446
d1k2fa_	190	SIAH, seven in absentia homolog {Mouse (Mus muscul	100.0
d1k2fa_	190	SIAH, seven in absentia homolog {Mouse (Mus muscul	99.83
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.86
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.85
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.84
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.75
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.65
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.62
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.61
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.29
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.17
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.14
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.05
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	97.92
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	96.85
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	96.82
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	96.36
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	94.58
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	93.93
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	93.51
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	92.41
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	89.71
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	88.81
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	88.08
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	86.43
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	84.76
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	83.58
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	81.7
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	81.67
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	80.48

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-42  Score=317.68  Aligned_cols=188  Identities=80%  Similarity=1.351  Sum_probs=178.9

Q ss_pred             hcccCcccCCCCCeEeecCCCchhHHhhCCCCCccCCCCCCCcccccChhHHHHHhhhccCcceeecCceEEEeeecccc
Q psy17006        259 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINL  338 (446)
Q Consensus       259 ~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g~~~~l~~H~~~~H~~~~~~~~~~~~f~~~~~~~  338 (446)
                      ++.+||+|+..||++++++.++..||++|+|+|+.||+++.+|+|+|.+++|..|++.+|++..+..+.+++|.+.++++
T Consensus         1 Sv~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~~~~~~~~~~~~   80 (190)
T d1k2fa_           1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINL   80 (190)
T ss_dssp             CCCCCCTTGGGTCCCCCCGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSSCCCEEEESSEEEEEECCTTC
T ss_pred             CeeEecCCCCCCCCEeccccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcCCcccccCccceEEeeecccc
Confidence            46899999999999999999999999999999999999999999999999999999999999888889999999989888


Q ss_pred             ccceeEEEEeeecceEEEEEEEeecc-cCceeEEEEEEEeCCcccccccEEEEEEecCCceEEEEecccchhhhhhhhhc
Q psy17006        339 AGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIM  417 (446)
Q Consensus       339 ~~~~~~~~~~~~~g~~Fll~~~~~~~-~~~~~~~~~v~~iG~~~~a~~f~Yel~v~~~~r~l~~~~~~~s~~~~~~~~~~  417 (446)
                      .+..+|++++.++|++|+|++.++.. .+..+++|+|+++|++++|++|.|+|++++++|+|+|++.|+|++++.+++++
T Consensus        81 ~~~~~~v~~~~~~g~~F~l~~~~~~~~~~~~~~~~~v~~~G~~~~a~~f~Yel~l~~~~r~l~~~~~~~si~e~~~~~~~  160 (190)
T d1k2fa_          81 PGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIM  160 (190)
T ss_dssp             TTCCEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHHHHH
T ss_pred             ccceeEEEEEecCCCEEEEEEEEEeccCCCCeEEEEEEEECCHHHhhCccEEEEecCCCceEEEeccccccccccccccC
Confidence            88899999999999999999998764 45578899999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEehhhHhhhhcCCceEEEEEEeC
Q psy17006        418 NSDCLVFDSNIAQLFADNKNLGINVTIAT  446 (446)
Q Consensus       418 ~~dcl~i~~~~~~~f~~~~~l~~~v~i~~  446 (446)
                      ++|||+|++++|++|+++|+|+|+|||+|
T Consensus       161 ~~d~lvi~~~~~~~F~~~g~L~l~v~I~~  189 (190)
T d1k2fa_         161 NSDCLVFDTSIAQLFAENGNLGINVTISM  189 (190)
T ss_dssp             TTCSEEEEHHHHHHHCBTTBEEEEEEEEE
T ss_pred             CCCEEEECHHHHhhcccCCcEEEEEEEEe
Confidence            99999999999999999999999999985

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.1e-21  Score=177.81  Aligned_cols=128  Identities=77%  Similarity=1.355  Sum_probs=119.9

Q ss_pred             hccccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceecCccEEEEeeccCc
Q psy17006         91 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINL  170 (446)
Q Consensus        91 ~l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~~c~~~f~~~~~~~  170 (446)
                      ++.+||+|++.||++++++.++.+||++|+|+|+.||.++.+|+|+|.+++|..|++..|+...+..+.+..|.+.+.++
T Consensus         1 Sv~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~~~~~~~~~~~~   80 (190)
T d1k2fa_           1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINL   80 (190)
T ss_dssp             CCCCCCTTGGGTCCCCCCGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSSCCCEEEESSEEEEEECCTTC
T ss_pred             CeeEecCCCCCCCCEeccccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcCCcccccCccceEEeeecccc
Confidence            46899999999999999999999999999999999999988999999999999999999998888889999999999999


Q ss_pred             ccccceEEEeeeccceEEEEEEeeec-ccchhhHHHHHHhcCcccccce
Q psy17006        171 AGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLIGSRKQAEHF  218 (446)
Q Consensus       171 ~~~~~~~~~~~c~~~~f~~~~~k~~~-~~~~~~~~~~q~~g~~~~~~~~  218 (446)
                      +++.+|++++.|+|++|++++++.+. +..+.|++.++++|++.+|+.+
T Consensus        81 ~~~~~~v~~~~~~g~~F~l~~~~~~~~~~~~~~~~~v~~~G~~~~a~~f  129 (190)
T d1k2fa_          81 PGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENF  129 (190)
T ss_dssp             TTCCEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEESSCHHHHTTE
T ss_pred             ccceeEEEEEecCCCEEEEEEEEEeccCCCCeEEEEEEEECCHHHhhCc
Confidence            99999999999999999999999875 4678899999999999998764

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.86  E-value=2.2e-10  Score=87.50  Aligned_cols=62  Identities=15%  Similarity=0.370  Sum_probs=51.7

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVT   93 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~   93 (446)
                      .++.+.|.||||.++|.+|| ...|||+||.+|+.++     ..||.|+.++..   .+|.+++++|+++.
T Consensus         3 peiP~~l~CpIc~~~m~dPV-~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~   72 (78)
T d1t1ha_           3 PEFPEYFRCPISLELMKDPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEE-EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred             CCCCccCCCcCcCchhhCce-EccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHH
Confidence            46778999999999999998 5578999999998753     469999998863   47889998888753

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=6.2e-10  Score=85.33  Aligned_cols=62  Identities=23%  Similarity=0.291  Sum_probs=52.8

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVT   93 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~   93 (446)
                      .++.+.|.||||.++|.+|| ...|||+||..|+.+.     ..||.|++++..   .+|.+|+++|+++.
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv-~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l   71 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI   71 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred             CCCCccccCcCcCchhhhhc-ccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHH
Confidence            36778999999999999998 5578999999998863     479999999863   57999999998854

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3e-10  Score=90.45  Aligned_cols=62  Identities=23%  Similarity=0.500  Sum_probs=50.8

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC--CCCCCCCCCCcc---ccchHHHHHhhhc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLGN---IRNLAMEKVAETV   92 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~~---~~~~~~e~~~~~l   92 (446)
                      +++.+.+.||||.+++.+|+....|||.||..|+.++  ..||.||.++..   .+|+.+++++..+
T Consensus        17 ~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~   83 (97)
T d1jm7b_          17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC   83 (97)
T ss_dssp             HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred             HhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhccccccCCcCchhhCcccHHHHHHHHHH
Confidence            5667889999999999999844467999999999875  479999997752   4788888887654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=4.3e-10  Score=87.22  Aligned_cols=60  Identities=20%  Similarity=0.477  Sum_probs=47.1

Q ss_pred             ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----ccchHHHHHhh
Q psy17006         30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAE   90 (446)
Q Consensus        30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----~~~~~~e~~~~   90 (446)
                      .+++.+.+.||||.+++.+|+ ...|||.||..|+.++     ..||.||.++..    .+.+++.++++
T Consensus        17 ~~d~~~~l~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l~   85 (86)
T d1rmda2          17 PAHFVKSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN   85 (86)
T ss_dssp             CHHHHHHTBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred             hhhhccCcCCccCCcchhcce-ecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHhc
Confidence            456667789999999999998 5578999999999863     479999998762    24556666554

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=8.8e-09  Score=73.03  Aligned_cols=44  Identities=23%  Similarity=0.480  Sum_probs=38.5

Q ss_pred             CceecccccCcCcCccccccccceeccCcccCC-CCCCCCCCCCcc
Q psy17006         35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCSTCRGPLGN   79 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~CP~Cr~~~~~   79 (446)
                      +.|+|+||.+.+.+|+ ...|||.||..|+.+. ..||+||+++..
T Consensus         5 ~~l~C~IC~~~~~~p~-~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_           5 QFLRCQQCQAEAKCPK-LLPCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCS-CSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             CCCCCcccCcccCCCE-EecCCCHHhHHHHHcCCCcCcCCCCcccC
Confidence            5689999999999998 5567999999999886 589999998863

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.2e-10  Score=88.84  Aligned_cols=67  Identities=22%  Similarity=0.715  Sum_probs=49.8

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCCCCCCcc---ccchHHHHHhhhc-cccccc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLGN---IRNLAMEKVAETV-TFPCRY   98 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~~---~~~~~~e~~~~~l-~v~C~~   98 (446)
                      +.+++.|.||||.+++.+|+ ...|||+||..|+.++       ..||.||.++..   .+|..+.++++.+ ++.|+.
T Consensus        16 ~~l~~~l~CpIC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~~~~~~   93 (103)
T d1jm7a_          16 NAMQKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICAF   93 (103)
T ss_dssp             HHHHHHTSCSSSCCCCSSCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHHHH
T ss_pred             HhcccCcCCCccCchhCCeE-EcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHHHHccc
Confidence            34567789999999999998 4568999999998652       479999998752   3565555666554 455553

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.2e-08  Score=81.14  Aligned_cols=63  Identities=16%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             cCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006         31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVT   93 (446)
Q Consensus        31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~   93 (446)
                      .++.+.|.||||+.+|.+||....+||.||..|+.++    ..||.|++++..   .+|.+|++.|+.+.
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~   86 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL   86 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHH
Confidence            4677889999999999999843234569999999874    589999999863   58999999988754

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=5.2e-08  Score=69.02  Aligned_cols=42  Identities=12%  Similarity=0.165  Sum_probs=36.0

Q ss_pred             eecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      |.||||++++.+|+..-.|||.||.+|+.++    ..||.||+++.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~   46 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   46 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCC
Confidence            5799999999999843346999999999874    68999999886

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.17  E-value=2.4e-07  Score=68.19  Aligned_cols=43  Identities=21%  Similarity=0.567  Sum_probs=35.7

Q ss_pred             eecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc
Q psy17006         37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN   79 (446)
Q Consensus        37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~   79 (446)
                      -+||||.+.+.+|++.-.|||.||..|+.++    ..||+||.++..
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            3599999999887644467999999999864    689999998863

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.4e-07  Score=65.59  Aligned_cols=42  Identities=29%  Similarity=0.851  Sum_probs=33.4

Q ss_pred             eecccccCcCcCc---cccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006         37 FECPVCFDYVLPP---IIQCQSGHLVCSNCRPKL-----SCCSTCRGPLG   78 (446)
Q Consensus        37 l~C~iC~~~l~~P---v~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~   78 (446)
                      ++||||.+.+...   +..+.|||.||..|+.++     .+||+||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            5899999988543   235678999999998763     36999999875

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.3e-07  Score=68.83  Aligned_cols=42  Identities=24%  Similarity=0.549  Sum_probs=35.3

Q ss_pred             eecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc
Q psy17006         37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN   79 (446)
Q Consensus        37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~   79 (446)
                      ..|+||.+.+.+|+ ...|||.||..|+.++     ..||+||..+..
T Consensus        24 ~~C~IC~~~~~~~~-~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          24 QLCKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             TBCTTTSSSBCCEE-CSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCccCCCcCCCeE-EeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            46999999999998 3457999999998653     479999998864

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.05  E-value=9.9e-07  Score=61.90  Aligned_cols=45  Identities=24%  Similarity=0.451  Sum_probs=35.6

Q ss_pred             CCCceecccccCcCcCc--cccc-cccceeccCcccCC----CCCCCCCCCC
Q psy17006         33 LASLFECPVCFDYVLPP--IIQC-QSGHLVCSNCRPKL----SCCSTCRGPL   77 (446)
Q Consensus        33 l~~~l~C~iC~~~l~~P--v~qC-~~GH~~C~~C~~~~----~~CP~Cr~~~   77 (446)
                      +++..+|+||.+.+.+.  +.+. .|||.||..|+.++    ..||+||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            45667899999999753  3343 37999999999875    5899999876

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=4.4e-07  Score=66.10  Aligned_cols=44  Identities=30%  Similarity=0.674  Sum_probs=33.5

Q ss_pred             CceecccccCcCc-Cc---cccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006         35 SLFECPVCFDYVL-PP---IIQCQSGHLVCSNCRPKL-----SCCSTCRGPLG   78 (446)
Q Consensus        35 ~~l~C~iC~~~l~-~P---v~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~   78 (446)
                      +...||||.+.+. +|   ++...|||.||..|+.++     ..||+||+++.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcc
Confidence            4578999998653 22   234467999999999763     47999999885

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00011  Score=58.80  Aligned_cols=43  Identities=16%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             ceecccccCcCcCcc-----------------ccccccceeccCcccCC---------CCCCCCCCCCc
Q psy17006         36 LFECPVCFDYVLPPI-----------------IQCQSGHLVCSNCRPKL---------SCCSTCRGPLG   78 (446)
Q Consensus        36 ~l~C~iC~~~l~~Pv-----------------~qC~~GH~~C~~C~~~~---------~~CP~Cr~~~~   78 (446)
                      .-.|+||.+.|..+.                 ....|||.||..|+..+         ..||+||..+.
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            346999999886431                 12457999999998763         26999998764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00011  Score=56.23  Aligned_cols=41  Identities=12%  Similarity=0.309  Sum_probs=30.0

Q ss_pred             ecccccCcCcCcc-----------------ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006         38 ECPVCFDYVLPPI-----------------IQCQSGHLVCSNCRPKL----SCCSTCRGPLG   78 (446)
Q Consensus        38 ~C~iC~~~l~~Pv-----------------~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~   78 (446)
                      .|+||.+.+.++-                 ..-.|||.|+..|+.++    ..||+||.++.
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            3778777665432                 12247999999999874    68999999875

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=96.36  E-value=0.00032  Score=49.38  Aligned_cols=45  Identities=16%  Similarity=0.299  Sum_probs=34.3

Q ss_pred             CCceecccccCcCcCcc-cccc---ccceeccCcccCC------CCCCCCCCCCc
Q psy17006         34 ASLFECPVCFDYVLPPI-IQCQ---SGHLVCSNCRPKL------SCCSTCRGPLG   78 (446)
Q Consensus        34 ~~~l~C~iC~~~l~~Pv-~qC~---~GH~~C~~C~~~~------~~CP~Cr~~~~   78 (446)
                      ++...|+||++.+.++. ..|.   ++|.|+..|+.++      ..||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            35577999998887664 2343   4799999999874      47999999764

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.0039  Score=47.53  Aligned_cols=32  Identities=16%  Similarity=0.403  Sum_probs=22.8

Q ss_pred             CceecccccCcCcCc-ccc-ccccceeccCcccC
Q psy17006         35 SLFECPVCFDYVLPP-IIQ-CQSGHLVCSNCRPK   66 (446)
Q Consensus        35 ~~l~C~iC~~~l~~P-v~q-C~~GH~~C~~C~~~   66 (446)
                      ....|+||++.+... ++. -.|||.||..|+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~   37 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ   37 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHH
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHH
Confidence            346899999887531 112 24699999999875

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.017  Score=39.58  Aligned_cols=30  Identities=23%  Similarity=0.451  Sum_probs=25.1

Q ss_pred             eeeeccCcccccCcccCC-CCCCCCCCCCCc
Q psy17006        218 FTYCQSGHLVCSNCRPKL-SCCSTCRGPLGN  247 (446)
Q Consensus       218 ~~~C~~gh~~C~~C~~~~-~~Cp~Cr~~~~~  247 (446)
                      ....+.||++|..|..+. ..||.||.++..
T Consensus        19 p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_          19 PKLLPCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             CEEecCCCHHhHHHHHcCCCcCcCCCCcccC
Confidence            345689999999999875 599999999875

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.022  Score=43.46  Aligned_cols=41  Identities=22%  Similarity=0.443  Sum_probs=30.1

Q ss_pred             eeeccCcccccCcccCC--CCCCCCCCCCCc---cccHHHHHHHhh
Q psy17006        219 TYCQSGHLVCSNCRPKL--SCCSTCRGPLGN---IRNLAMEKVAET  259 (446)
Q Consensus       219 ~~C~~gh~~C~~C~~~~--~~Cp~Cr~~~~~---~r~~~~e~~c~~  259 (446)
                      ...++||++|..|..+.  ..||.||.++..   ..|..++++...
T Consensus        37 ~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~   82 (97)
T d1jm7b_          37 CLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQL   82 (97)
T ss_dssp             CCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHH
T ss_pred             eeCCCCCchhHHHHHHHHhccccccCCcCchhhCcccHHHHHHHHH
Confidence            34478999999998874  579999987753   346777665543

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.01  Score=40.02  Aligned_cols=30  Identities=30%  Similarity=0.834  Sum_probs=24.4

Q ss_pred             eeeeccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006        218 FTYCQSGHLVCSNCRPKL-----SCCSTCRGPLGN  247 (446)
Q Consensus       218 ~~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~  247 (446)
                      +..++.||.+|..|..+.     ..||.||.++..
T Consensus        17 ~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_          17 FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             EEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            456789999999998762     369999998864

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=89.71  E-value=0.033  Score=39.56  Aligned_cols=26  Identities=23%  Similarity=0.611  Sum_probs=22.3

Q ss_pred             ccCcccccCcccC----CCCCCCCCCCCCc
Q psy17006        222 QSGHLVCSNCRPK----LSCCSTCRGPLGN  247 (446)
Q Consensus       222 ~~gh~~C~~C~~~----~~~Cp~Cr~~~~~  247 (446)
                      +.||++|..|..+    ...||.||.++..
T Consensus        23 ~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_          23 PCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            6799999999976    2689999998864

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.81  E-value=0.064  Score=39.19  Aligned_cols=29  Identities=28%  Similarity=0.662  Sum_probs=23.1

Q ss_pred             eccCcccccCcccC-----CCCCCCCCCCCCccc
Q psy17006        221 CQSGHLVCSNCRPK-----LSCCSTCRGPLGNIR  249 (446)
Q Consensus       221 C~~gh~~C~~C~~~-----~~~Cp~Cr~~~~~~r  249 (446)
                      -++||++|..|..+     ...||.||.++...+
T Consensus        39 ~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          39 EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             SSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             eCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            46899999999854     247999999987643

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.035  Score=39.08  Aligned_cols=29  Identities=31%  Similarity=0.721  Sum_probs=23.1

Q ss_pred             eeeccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006        219 TYCQSGHLVCSNCRPKL-----SCCSTCRGPLGN  247 (446)
Q Consensus       219 ~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~  247 (446)
                      ...+.||++|..|..+.     ..||.||.++..
T Consensus        22 ~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_          22 MVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             EECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             EeCccChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            34578999999998752     479999998863

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.43  E-value=0.043  Score=41.00  Aligned_cols=29  Identities=31%  Similarity=0.574  Sum_probs=23.5

Q ss_pred             eeeccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006        219 TYCQSGHLVCSNCRPKL-----SCCSTCRGPLGN  247 (446)
Q Consensus       219 ~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~  247 (446)
                      ..-++||++|..|..+.     .+||.||.++..
T Consensus        37 v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          37 VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             eecCCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            34589999999998752     489999998764

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.76  E-value=0.17  Score=38.61  Aligned_cols=26  Identities=27%  Similarity=0.680  Sum_probs=21.1

Q ss_pred             eccCcccccCcccC-------CCCCCCCCCCCC
Q psy17006        221 CQSGHLVCSNCRPK-------LSCCSTCRGPLG  246 (446)
Q Consensus       221 C~~gh~~C~~C~~~-------~~~Cp~Cr~~~~  246 (446)
                      -++||++|..|..+       ...||.||.++.
T Consensus        37 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          37 TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             cCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            47899999999753       147999999875

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=83.58  E-value=0.14  Score=34.46  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=20.1

Q ss_pred             cCcccccCcccCC----CCCCCCCCCCC
Q psy17006        223 SGHLVCSNCRPKL----SCCSTCRGPLG  246 (446)
Q Consensus       223 ~gh~~C~~C~~~~----~~Cp~Cr~~~~  246 (446)
                      .||.+|..|..+-    ..||.||.++.
T Consensus        27 C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_          27 CGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            6899999998872    58999998763

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.70  E-value=0.56  Score=27.80  Aligned_cols=26  Identities=31%  Similarity=0.698  Sum_probs=19.8

Q ss_pred             CCccCCCCCCCcccccC-hhHHHHHhhhc
Q psy17006        290 RPYHCPCPGASCKWSGA-LDQVMGHLNQS  317 (446)
Q Consensus       290 ~~~~Cp~~~~~C~~~g~-~~~l~~H~~~~  317 (446)
                      +|+.|+++|  |++... ...|..|.+..
T Consensus         2 rP~~C~~pg--C~k~F~r~~~L~~H~r~H   28 (32)
T d1zfda_           2 RPYSCDHPG--CDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             CSBCCCCTT--CCCCBSSSHHHHHHHGGG
T ss_pred             cCeECcCCC--CCCeeCCHHHHHHHhhhc
Confidence            588899885  999855 55799997654

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.67  E-value=2.2  Score=30.17  Aligned_cols=43  Identities=19%  Similarity=0.276  Sum_probs=32.0

Q ss_pred             CceecccccCcCcCccccccccceeccCcccCC-CCCCCCCCCC
Q psy17006         35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCSTCRGPL   77 (446)
Q Consensus        35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~CP~Cr~~~   77 (446)
                      ..-.|.+|..-|.-..++|.||+.||...+... -.|+.+-+..
T Consensus        24 kk~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~C~fDyK~~   67 (74)
T d1wfpa_          24 TATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGV   67 (74)
T ss_dssp             CCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSC
T ss_pred             CCCcChhcCCccCCCceecCCCChhhhccCCccCcCCCCcchhc
Confidence            467899999777554469999999999998653 4777665443

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=80.48  E-value=0.21  Score=35.12  Aligned_cols=38  Identities=29%  Similarity=0.746  Sum_probs=29.9

Q ss_pred             eecccccCcCcCccccccccceeccCcccCC---CCCCCCCCCCcc
Q psy17006         37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL---SCCSTCRGPLGN   79 (446)
Q Consensus        37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~---~~CP~Cr~~~~~   79 (446)
                      +.||.|...|.. .    .|+..|..|-...   ..||.|..++..
T Consensus         3 ~~CP~C~~eL~~-~----~~~~~C~~C~~~~~~~a~CPdC~~~Le~   43 (71)
T d2jnea1           3 LHCPQCQHVLDQ-D----NGHARCRSCGEFIEMKALCPDCHQPLQV   43 (71)
T ss_dssp             CBCSSSCSBEEE-E----TTEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred             CcCCCccCcccc-c----CCCEehhhhhhhheeEEeCCccccHHHH
Confidence            689999988543 2    3889999998763   689999998863