Psyllid ID: psy17017

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--

MSIPSRINLGYSNYYRDNGGIHSARICLNQCKANFKPFSSQGGSGDRGSKDDDGTIKDIMPAEDISTKSNAIAAVAVPPVWPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKDLSEVYSVGSFVHIREVLTLPDRLRLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGPDEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTK

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEEEEccHHHHHHHHHHHHHccccEEEccccccccccccccccccEEEEEEEEEccccEEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccccEEcHHcccccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccHHHHHHcc

cccccEEEcccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEEEEccHHHHHHHHHHHHccccEEcccccccccccHHHcccccEEEEEEEEccccccEEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccHcccccccccHccccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcc

msipsrinlgysnyyrdnggihsARICLNQCkanfkpfssqggsgdrgskdddgtikdimpaedistksnaiaavavppvwphlpliavskiplfpkfiKIVDIFDQPLIDLIKRKvnlnqpyagvdhKVSLVKDLsevysvgsfvhirevltlpdRLRLVLLAHRRIkivapyedvdegpkvmnlkfpgvkdGFDVLLEetngggarkkrslrkrngvkpavpteseeappvpgpgpdepkpvTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQqenspvvdnpiyLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERikdkkvpppvmEVLNEELAKLgfleshssefnVTRNYLDWLTK

msipsrinLGYSNYYRDNGGIHSARICLNQCKANFKpfssqggsgdrgskdddgtIKDIMPAEDISTKSNAIAAVAVPPVWPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKDLSEVYSVGsfvhirevltlpdRLRLVLLAHRRIKivapyedvdegpkVMNLKFPGVKDGFDVLLEEtngggarkkrslrkrngvkpavpteseeappvpgpgpdepKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIkkelglekddkdaIEEKFrerikdkkvpppvMEVLNEELAKLgfleshssefnvtrnyldwltk

MSIPSRINLGYSNYYRDNGGIHSARICLNQCKANFKPFssqggsgdrgskdddgTIKDIMPAEDISTKSNAIaavavppvwpHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKDLSEVYSVGSFVHIREvltlpdrlrlvllAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTeseeappvpgpgpdepkpVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRlmlslsllkkelelnklqqkIGREVEEKVKQQHRKYILQEQLKAIkkelglekddkdAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTK

******INLGYSNYYRDNGGIHSARICLNQCKANF**********************************NAIAAVAVPPVWPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKDLSEVYSVGSFVHIREVLTLPDRLRLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLL************************************************EVVNLKH**F***EEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELN********************YILQ***************************************VLNEELAKLGFLESHSSEFNVTRNYLDWL**

*********GYSNYYR***************************************************************VWPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKDLSEVYSVGSFVHIREVLTLPDRLRLVLLAHRRIKIVAP********************************************************APPVPGPGPDEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNK*****************RKYILQEQLKAIKKELGL******A**EKFRERIKDKKVPPPVMEVLNEELAKL*******SEFNVTRNYLDWLTK

MSIPSRINLGYSNYYRDNGGIHSARICLNQCKANFKPF************DDDGTIKDIMPAEDISTKSNAIAAVAVPPVWPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKDLSEVYSVGSFVHIREVLTLPDRLRLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNG********************************GPDEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTK

*SIPSRINLGYSNYYRDNGGIHSARICLNQCKA**************************************IAAVAVPPVWPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKDLSEVYSVGSFVHIREVLTLPDRLRLVLLAHRRIKIVAPY*************************************************************PGPDEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTK

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSIPSRINLGYSNYYRDNGGIHSARICLNQCKANFKPFSSQGGSGDRGSKDDDGTIKDIMPAEDISTKSNAIAAVAVPPVWPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKDLSEVYSVGSFVHIREVLTLPDRLRLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGPDEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSxxxxxxxxxxxxxxxxxxxxxKVKQQHRKYILQEQxxxxxxxxxxxxxxxxxxxxxFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		442	2.2.26 [Sep-21-2011]
Q59HJ6		961	Lon protease homolog, mit	yes	N/A	0.785	0.361	0.528	1e-102
Q924S5		950	Lon protease homolog, mit	yes	N/A	0.852	0.396	0.498	1e-100
Q8CGK3		949	Lon protease homolog, mit	yes	N/A	0.846	0.394	0.498	1e-100
Q7KUT2		1024	Lon protease homolog, mit	yes	N/A	0.880	0.379	0.493	4e-99
P36776		959	Lon protease homolog, mit	yes	N/A	0.794	0.366	0.513	1e-98
A8XFM8		960	Lon protease homolog, mit	N/A	N/A	0.871	0.401	0.404	1e-69
O44952		971	Lon protease homolog, mit	yes	N/A	0.882	0.401	0.386	2e-68
Q4X0Z7		1108	Lon protease homolog, mit	yes	N/A	0.846	0.337	0.350	7e-53
A2QCJ2		1113	Lon protease homolog, mit	yes	N/A	0.861	0.342	0.334	1e-50
Q5AZT7		1104	Lon protease homolog, mit	yes	N/A	0.782	0.313	0.349	2e-50

>sp\|Q59HJ6\|LONM_BOVIN Lon protease homolog, mitochondrial OS=Bos taurus GN=LONP1 PE=1 SV=1	Back alignment and function desciption

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/382 (52%), Positives = 271/382 (70%), Gaps = 35/382 (9%)

Query: 70  NAIAAVAVPPVWPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGV--- 126
            A+  + +P V+PHLPLIAV++ P+FP+FIKIV++ ++ L++L++RKV+L QPYAGV   
Sbjct: 111 TALTPMMIPDVFPHLPLIAVTRNPVFPRFIKIVEVKNKKLVELLRRKVHLAQPYAGVFLK 170

Query: 127 ---DHKVSLVKDLSEVYSVGSFVHIREVLTLPDRLRLVLLAHRRIKIVAPYEDVDEGPKV 183
              +++  +V++L E+Y  G+FV I E+  L D+LR++++ HRR+ I    E   E P+ 
Sbjct: 171 KDDNNESDVVENLDEIYHTGTFVQIHEMQDLGDKLRMIVMGHRRVHINRQLEVEPEEPEG 230

Query: 184 MNLKFPGVKDGFDVLLEETNGGGARKKRSLRKR--NGVKPAVPTESEEAP--PVPGPGPD 239
            N                        K+ LRK+   G K A    + + P   V GPGP 
Sbjct: 231 EN------------------------KQKLRKKPKRGKKEAEEDGATKRPLEVVVGPGPS 266

Query: 240 EPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPV 299
               V MVEV N+ HE F+ +EE KAL  E++KT+RDII++NPLY+E ++ ++Q  +  V
Sbjct: 267 PAGEVLMVEVENVAHEDFQVTEEVKALTAEIVKTIRDIIALNPLYRESVLQMMQAGHR-V 325

Query: 300 VDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVE 359
           VDNPIYL+D+GAALTGAE  E Q +LEE +IPKRL  +LSLLKKE EL+KLQQ++GREVE
Sbjct: 326 VDNPIYLSDMGAALTGAESHELQEVLEETNIPKRLYKALSLLKKEFELSKLQQRLGREVE 385

Query: 360 EKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAK 419
           EK+KQ HRKY+LQEQLK IKKELGLEKDDKDAIEEKFRER+K+  VP  VM+V++EEL+K
Sbjct: 386 EKIKQTHRKYLLQEQLKIIKKELGLEKDDKDAIEEKFRERLKELVVPKHVMDVVDEELSK 445

Query: 420 LGFLESHSSEFNVTRNYLDWLT 441
           LG L++HSSEFNVTRNYLDWLT
Sbjct: 446 LGLLDNHSSEFNVTRNYLDWLT 467

ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial promoters and RNA in a single-stranded, site-specific, and strand-specific manner. May regulate mitochondrial DNA replication and/or gene expression using site-specific, single-stranded DNA binding to target the degradation of regulatory proteins binding to adjacent sites in mitochondrial promoters (By similarity). Endogenous substrates include oxidized aconitase.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp\|Q924S5\|LONM_RAT Lon protease homolog, mitochondrial OS=Rattus norvegicus GN=Lonp1 PE=2 SV=1	Back alignment and function description

>sp\|Q8CGK3\|LONM_MOUSE Lon protease homolog, mitochondrial OS=Mus musculus GN=Lonp1 PE=1 SV=2	Back alignment and function description

>sp\|Q7KUT2\|LONM_DROME Lon protease homolog, mitochondrial OS=Drosophila melanogaster GN=CG8798 PE=2 SV=1	Back alignment and function description

>sp\|P36776\|LONM_HUMAN Lon protease homolog, mitochondrial OS=Homo sapiens GN=LONP1 PE=1 SV=2	Back alignment and function description

>sp\|A8XFM8\|LONM_CAEBR Lon protease homolog, mitochondrial OS=Caenorhabditis briggsae GN=CBG12802 PE=3 SV=3	Back alignment and function description

>sp\|O44952\|LONM_CAEEL Lon protease homolog, mitochondrial OS=Caenorhabditis elegans GN=C34B2.6 PE=3 SV=1	Back alignment and function description

>sp\|Q4X0Z7\|LONM_ASPFU Lon protease homolog, mitochondrial OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pim1 PE=3 SV=1	Back alignment and function description

>sp\|A2QCJ2\|LONM_ASPNC Lon protease homolog, mitochondrial OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pim1 PE=3 SV=1	Back alignment and function description

>sp\|Q5AZT7\|LONM_EMENI Lon protease homolog, mitochondrial OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pim1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		442
307179447		1003	Lon protease-like protein, mitochondrial	0.830	0.365	0.579	1e-116
345485119		1016	PREDICTED: lon protease homolog, mitocho	0.911	0.396	0.527	1e-115
380020256		1010	PREDICTED: lon protease homolog, mitocho	0.852	0.373	0.552	1e-114
328782140		1012	PREDICTED: lon protease homolog, mitocho	0.852	0.372	0.554	1e-113
350397414		1010	PREDICTED: lon protease homolog, mitocho	0.855	0.374	0.559	1e-113
340715337		1010	PREDICTED: LOW QUALITY PROTEIN: lon prot	0.850	0.372	0.559	1e-113
332023997		987	Lon protease-like protein, mitochondrial	0.796	0.356	0.567	1e-113
307198928		989	Lon protease-like protein, mitochondrial	0.787	0.351	0.561	1e-112
383855526		1031	PREDICTED: LOW QUALITY PROTEIN: lon prot	0.832	0.356	0.552	1e-110
242011026		901	predicted protein [Pediculus humanus cor	0.803	0.394	0.598	1e-105

>gi\|307179447\|gb\|EFN67771.1\| Lon protease-like protein, mitochondrial [Camponotus floridanus]	Back alignment and taxonomy information

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/397 (57%), Positives = 283/397 (71%), Gaps = 30/397 (7%)

Query: 73  AAVAVPPVWPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGV------ 126
           A V VP VWP++P+IA+++ P+FP+FIK+++I +  LIDLI+RK+ LNQPY GV      
Sbjct: 104 ATVVVPEVWPYVPVIAINRNPVFPRFIKLIEISNPILIDLIRRKIKLNQPYVGVFLKKNE 163

Query: 127 DHKVSLVKDLSEVYSVGSFVHIREVLTLPDRLRLVLLAHRRIKIVAPYEDVDEGPKV--- 183
           +++  +V++L ++Y +G+F  + E+  L +RLRLV++AHRRIKIV    D D  PK    
Sbjct: 164 ENEAEIVQNLDDIYPIGTFAQVHEIQDLGNRLRLVIMAHRRIKIVNQIFD-DPNPKSEHK 222

Query: 184 MNLKFPGVKDGFDVLLEETNGGGARKKRSLRKR-----------------NGVKPAVPTE 226
           M L FP +     V +++T       +RSLRK+                   VKP V + 
Sbjct: 223 MKLTFPLLNTTITVPVDDTVNSSKISRRSLRKKAENKVLEKIEKLDEVDSTEVKPPVDSS 282

Query: 227 SE--EAPPVPGPGPDEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLY 284
           SE  E P          +P+ MVEVVN+ HEKFKQ+EE KAL QE+IKT+RDIISMNPLY
Sbjct: 283 SEKTEKPSNSSAPQSGSQPILMVEVVNVTHEKFKQTEEIKALTQELIKTIRDIISMNPLY 342

Query: 285 KEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKE 344
           +E L  +L Q    VVDNP+YL+DLGAALTGA+  E Q +LEEMDI KRL LSL+LLKKE
Sbjct: 343 REALQQMLHQ-GQKVVDNPVYLSDLGAALTGADAQELQQVLEEMDILKRLRLSLALLKKE 401

Query: 345 LELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKK 404
            EL+KLQQKIGREVEEKVKQQHRKYIL EQLK IKKELGLEKDDKDAIEEK+RERI+ K 
Sbjct: 402 YELSKLQQKIGREVEEKVKQQHRKYILHEQLKVIKKELGLEKDDKDAIEEKYRERIRQKT 461

Query: 405 VPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLT 441
           VP PVM+VL EEL KL FLESHSSEFNVTRNYLDWLT
Sbjct: 462 VPKPVMDVLEEELNKLSFLESHSSEFNVTRNYLDWLT 498

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|345485119\|ref\|XP_001603638.2\| PREDICTED: lon protease homolog, mitochondrial-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|380020256\|ref\|XP_003694006.1\| PREDICTED: lon protease homolog, mitochondrial-like [Apis florea]	Back alignment and taxonomy information

>gi\|328782140\|ref\|XP_392970.3\| PREDICTED: lon protease homolog, mitochondrial-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|350397414\|ref\|XP_003484872.1\| PREDICTED: lon protease homolog, mitochondrial-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|340715337\|ref\|XP_003396172.1\| PREDICTED: LOW QUALITY PROTEIN: lon protease homolog, mitochondrial-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|332023997\|gb\|EGI64215.1\| Lon protease-like protein, mitochondrial [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|307198928\|gb\|EFN79680.1\| Lon protease-like protein, mitochondrial [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|383855526\|ref\|XP_003703261.1\| PREDICTED: LOW QUALITY PROTEIN: lon protease homolog, mitochondrial-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|242011026\|ref\|XP_002426258.1\| predicted protein [Pediculus humanus corporis] gi\|212510321\|gb\|EEB13520.1\| predicted protein [Pediculus humanus corporis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		442
FB\|FBgn0036892		1024	Lon "Lon protease" [Drosophila	0.445	0.192	0.595	3.7e-72
ZFIN\|ZDB-GENE-030131-4006		966	lonp1 "lon peptidase 1, mitoch	0.780	0.357	0.438	4.9e-69
RGD\|621598		950	Lonp1 "lon peptidase 1, mitoch	0.445	0.207	0.550	2.8e-68
UNIPROTKB\|K7EJE8		829	LONP1 "Lon protease homolog" [	0.400	0.213	0.556	6.1e-64
UNIPROTKB\|Q59HJ6		961	LONP1 "Lon protease homolog, m	0.764	0.351	0.435	6.6e-63
UNIPROTKB\|E2QZD9		960	LONP1 "Uncharacterized protein	0.764	0.352	0.432	1.8e-62
UNIPROTKB\|K7EKE6		845	LONP1 "Lon protease homolog" [	0.773	0.404	0.418	2.3e-62
UNIPROTKB\|Q8N8K8		895	LONP1 "Lon protease homolog" [	0.773	0.382	0.418	2.3e-62
UNIPROTKB\|F1SBU7		960	LOC100622930 "Lon protease hom	0.776	0.357	0.428	2.4e-62
UNIPROTKB\|P36776		959	LONP1 "Lon protease homolog, m	0.773	0.356	0.418	6.6e-62

FB\|FBgn0036892 Lon "Lon protease" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 559 (201.8 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 118/198 (59%), Positives = 136/198 (68%)

Query:   244 VTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNP 303
             V +VEV N+K   +KQ+EE KAL QE+IKT+RDII+MNPLY+E L  +L Q N  VVDNP
Sbjct:   311 VLIVEVENVKQPIYKQTEEVKALTQEIIKTLRDIITMNPLYRESLQQMLHQ-NQRVVDNP 369

Query:   304 IYLADLGAALTGAEGTEQQAILEEMDIPKRXXXXXXXXXXXXXXXXXXXXIGREVEEKVK 363
             IYL DLGA+L+  E  E Q ILEE DIP+R                    IGREVEEKVK
Sbjct:   370 IYLCDLGASLSAGEPAELQKILEETDIPERLQLALTLLKKELELSRLQQKIGREVEEKVK 429

Query:   364 QQHRKYILQEQLKAIXXXXXXXXXXXXAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFL 423
             QQHRKYILQEQLK I            AI EK+RE++KDK VP  +M V++EEL KL FL
Sbjct:   430 QQHRKYILQEQLKVIKKELGIEKDDKDAIGEKYREKLKDKVVPEAIMTVIDEELTKLNFL 489

Query:   424 ESHSSEFNVTRNYLDWLT 441
             ESHSSEFNVTRNYLDWLT
Sbjct:   490 ESHSSEFNVTRNYLDWLT 507

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;IBA

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IBA;IMP

GO:0034599 "cellular response to oxidative stress" evidence=IBA

GO:0004176 "ATP-dependent peptidase activity" evidence=IBA

GO:0005524 "ATP binding" evidence=IBA

GO:0070407 "oxidation-dependent protein catabolic process" evidence=IBA

GO:0003727 "single-stranded RNA binding" evidence=IBA

GO:0003697 "single-stranded DNA binding" evidence=IBA

GO:0042645 "mitochondrial nucleoid" evidence=IBA

GO:0070361 "mitochondrial light strand promoter anti-sense binding" evidence=IBA

GO:0001666 "response to hypoxia" evidence=IBA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IBA

GO:0051131 "chaperone-mediated protein complex assembly" evidence=IBA

GO:0051260 "protein homooligomerization" evidence=IBA

ZFIN\|ZDB-GENE-030131-4006 lonp1 "lon peptidase 1, mitochondrial" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|621598 Lonp1 "lon peptidase 1, mitochondrial" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|K7EJE8 LONP1 "Lon protease homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q59HJ6 LONP1 "Lon protease homolog, mitochondrial" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QZD9 LONP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|K7EKE6 LONP1 "Lon protease homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8N8K8 LONP1 "Lon protease homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SBU7 LOC100622930 "Lon protease homolog" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P36776 LONP1 "Lon protease homolog, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q59HJ6	LONM_BOVIN	3, ., 4, ., 2, 1, ., -	0.5287	0.7850	0.3610	yes	N/A
P36776	LONM_HUMAN	3, ., 4, ., 2, 1, ., -	0.5132	0.7941	0.3660	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		442
TIGR00763		775	TIGR00763, lon, ATP-dependent protease La	4e-66
COG0466		782	COG0466, Lon, ATP-dependent Lon protease, bacteria	7e-46
PRK10787		784	PRK10787, PRK10787, DNA-binding ATP-dependent prot	7e-18
pfam02190		191	pfam02190, LON, ATP-dependent protease La (LON) do	1e-10
pfam02190		191	pfam02190, LON, ATP-dependent protease La (LON) do	9e-09
smart00464		92	smart00464, LON, Found in ATP-dependent protease L	0.001
COG0466		782	COG0466, Lon, ATP-dependent Lon protease, bacteria	0.004

>gnl\|CDD\|233119 TIGR00763, lon, ATP-dependent protease La	Back alignment and domain information

 Score =  225 bits (575), Expect = 4e-66
 Identities = 132/369 (35%), Positives = 185/369 (50%), Gaps = 84/369 (22%)

Query: 85  PLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGV---DHKVSLVKDLSEVYS 141
           PL+ + + PLFP  IK +D+  +  I LIK  + L QPY G+       +   +  ++YS
Sbjct: 1   PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRLKQPYLGLFLQKDDDNEEPEEDDIYS 60

Query: 142 VGSFVHIREVLTLPDR----LRLVLLAHRRIKIVAPYEDVDEGP----KVMNLKFPGVKD 193
           VG    I E+L LP       ++V+   RRI+I    E  D+G     +V NLK      
Sbjct: 61  VGVVAQILEMLPLPSSGTATYKVVVEGLRRIRIK---ELSDKGGYLVVRVDNLK------ 111

Query: 194 GFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGPDEPKPVTMVEVVNLK 253
                                         P + ++         +E K +T        
Sbjct: 112 ----------------------------EEPFDKDD---------EEIKALTR------- 127

Query: 254 HEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAAL 313
                   E K   +E+I         + L++EQ  +L        +D P  LAD  AA 
Sbjct: 128 --------EIKETFRELISL-------SKLFREQPALLSA---LEDIDEPGRLADFVAAS 169

Query: 314 TG-AEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQ 372
               E  E Q +LE ++I KRL  +L LLKKELEL KLQ KI ++VEEK+++  R+Y L+
Sbjct: 170 LQLKEKDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLR 229

Query: 373 EQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNV 432
           EQLKAIKKELG+EKDDKD + EK +E++++ K+P  V +V+ +EL KL  LE  SSEF V
Sbjct: 230 EQLKAIKKELGIEKDDKDEL-EKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTV 288

Query: 433 TRNYLDWLT 441
           TRNYLDWLT
Sbjct: 289 TRNYLDWLT 297

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 775

>gnl\|CDD\|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|182730 PRK10787, PRK10787, DNA-binding ATP-dependent protease La; Provisional	Back alignment and domain information

>gnl\|CDD\|216923 pfam02190, LON, ATP-dependent protease La (LON) domain	Back alignment and domain information

>gnl\|CDD\|216923 pfam02190, LON, ATP-dependent protease La (LON) domain	Back alignment and domain information

>gnl\|CDD\|197740 smart00464, LON, Found in ATP-dependent protease La (LON)	Back alignment and domain information

>gnl\|CDD\|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		442
COG0466		782	Lon ATP-dependent Lon protease, bacterial type [Po	100.0
PRK10787		784	DNA-binding ATP-dependent protease La; Provisional	100.0
KOG2004\|consensus		906		100.0
TIGR00763		775	lon ATP-dependent protease La. This protein is ind	100.0
PF02190		205	LON: ATP-dependent protease La (LON) domain; Inter	99.96
COG2802		221	Uncharacterized protein, similar to the N-terminal	99.84
smart00464		92	LON Found in ATP-dependent protease La (LON). N-te	98.87
KOG4159\|consensus		398		98.17
PRK10865		857	protein disaggregation chaperone; Provisional	97.93
TIGR01242		364	26Sp45 26S proteasome subunit P45 family. Many pro	95.82
TIGR02903		615	spore_lon_C ATP-dependent protease, Lon family. Me	82.77

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1.8e-61  Score=512.59  Aligned_cols=289  Identities=30%  Similarity=0.473  Sum_probs=265.5

Q ss_pred             ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-cc--CcCCCccccccccceEEEEEEeecCCc-e
Q psy17017         83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KV--SLVKDLSEVYSVGSFVHIREVLTLPDR-L  158 (442)
Q Consensus        83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~--~~v~~~~dly~vGTla~I~~~~~l~d~-~  158 (442)
                      .||+||||++|+||+|+.||+|+|++++++|+.+++.++.++++++ ++  ...++.+|+|+|||+|+|.++.++||| +
T Consensus         9 ~lpvlplr~~vvfP~m~~pl~vgr~~si~ale~a~~~~~k~i~l~~qk~~~~d~p~~~dly~vGt~a~I~q~~~lpdg~~   88 (782)
T COG0466           9 ELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTEDDLYEVGTLAKILQILKLPDGTV   88 (782)
T ss_pred             cceeEEecCceeCCCceeeEEcCChhHHHHHHHHHhCCCCEEEEEEecccccCCCChhhhhhcchheeeeeeeeCCCCcE
Confidence            5999999999999999999999999999999999998778888887 42  234678999999999999999999997 9


Q ss_pred             EEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q psy17017        159 RLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGP  238 (442)
Q Consensus       159 rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (442)
                      +|+|+|+.|++|.++....                                                             
T Consensus        89 kvlveg~~R~~I~~~~~~~-------------------------------------------------------------  107 (782)
T COG0466          89 KVLVEGLQRVRISKLSDEE-------------------------------------------------------------  107 (782)
T ss_pred             EEEEEeeeeEEEEeeccCC-------------------------------------------------------------
Confidence            9999999999999998763                                                             


Q ss_pred             CCCCCceEEEEEeecCCCcCCcHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhccCCCCCCChHHHHHHHHHhcCCCH
Q psy17017        239 DEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEG  318 (442)
Q Consensus       239 ~~~~p~l~a~Ve~l~~~~~~~~~e~kAL~~eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l~~~~  318 (442)
                          +++.|+++.+++.+.+.+.+++|+++.++..|++|+.+++.++.+..+.+..     +++|.+|||++|++++++.
T Consensus       108 ----~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~-----i~~~~klad~iaa~l~~~~  178 (782)
T COG0466         108 ----EFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIPPEELQSLNS-----IDDPGKLADTIAAHLPLKL  178 (782)
T ss_pred             ----CceEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhc-----ccchHHHHHHHHHhCCCCH
Confidence                6889999999876655567899999999999999999999665444444445     9999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHH
Q psy17017        319 TEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRE  398 (442)
Q Consensus       319 ~ekQ~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elre  398 (442)
                      +++|++||+.|+.+||++++.+|.+|+++.++|++|+.+|+++|+|+|||||||||||+||+|||++ ++..+++++|++
T Consensus       179 ~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~-~d~~~e~~~~~~  257 (782)
T COG0466         179 EEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGED-DDDKDEVEELRE  257 (782)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccchhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999954 344589999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhC
Q psy17017        399 RIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTK  442 (442)
Q Consensus       399 kl~~~~lpeev~k~~~kEL~RL~~m~~~S~E~~ViRnYLD~l~~  442 (442)
                      ||+++.||++|++++++||+||++|+|+||||+|+|||||||++
T Consensus       258 kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~  301 (782)
T COG0466         258 KIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLD  301 (782)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999985

>PRK10787 DNA-binding ATP-dependent protease La; Provisional	Back alignment and domain information

>KOG2004\|consensus	Back alignment and domain information

>TIGR00763 lon ATP-dependent protease La	Back alignment and domain information

>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]	Back alignment and domain information

>smart00464 LON Found in ATP-dependent protease La (LON)	Back alignment and domain information

>KOG4159\|consensus	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>TIGR01242 26Sp45 26S proteasome subunit P45 family	Back alignment and domain information

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		442
3ljc_A		252	ATP-dependent protease LA; LON N-domain, allosteri	2e-20
3m6a_A		543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	6e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3m65_A		209	ATP-dependent protease LA 1; coiled-coil, ATP-bind	8e-08
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli} Length = 252	Back alignment and structure

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 9/147 (6%)

Query: 242 KPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNP-LYKEQLMILLQQENSPVV 300
                 +   L+        E + L++  I      I +N  +  E L  L        +
Sbjct: 114 GEHFSAKAEYLE-SPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNS------I 166

Query: 301 DNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEE 360
           D+P  LAD  AA    +  ++Q++LE  D+ +RL   +++++ E++L +++++I   V++
Sbjct: 167 DDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKK 226

Query: 361 KVKQQHRKYILQEQLKAIKKELGLEKD 387
           ++++  R+Y L EQ+KAI+KELG E D
Sbjct: 227 QMEKSQREYYLNEQMKAIQKELG-EMD 252

PyMOL of 3ljc

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Length = 543	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis} Length = 209	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		442
3ljc_A		252	ATP-dependent protease LA; LON N-domain, allosteri	100.0
3m65_A		209	ATP-dependent protease LA 1; coiled-coil, ATP-bind	100.0
1zbo_A		210	Hypothetical protein BPP1347; alpha-beta protein,	100.0
2ane_A		125	ATP-dependent protease LA; LONN119, LON protease,	99.87

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}	Back alignment and structure

Probab=100.00  E-value=3.8e-51  Score=397.55  Aligned_cols=230  Identities=22%  Similarity=0.391  Sum_probs=210.6

Q ss_pred             ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-ccCc--CCCccccccccceEEEEEEeecCCc-e
Q psy17017         83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KVSL--VKDLSEVYSVGSFVHIREVLTLPDR-L  158 (442)
Q Consensus        83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~~~--v~~~~dly~vGTla~I~~~~~l~d~-~  158 (442)
                      .+|+|||+++|+|||+++||+||+++|++||++|++.++ .||+++ ++..  .++.+++|+|||+|+|.++.++||| +
T Consensus        17 ~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~-~~~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~~lpdG~~   95 (252)
T 3ljc_A           17 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDK-KIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTV   95 (252)
T ss_dssp             CCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTT-EEEEEEBCSSCCSSCCSSSBCSEEEEEEECCCBCCTTSCE
T ss_pred             ceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcCC-EEEEEEecCCCcCCCCccchhheeEEEEEEEEEECCCCeE
Confidence            499999999999999999999999999999999999765 567777 4333  2467899999999999999999998 9


Q ss_pred             EEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q psy17017        159 RLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGP  238 (442)
Q Consensus       159 rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (442)
                      +|+|+|++||+|.++...                                                              
T Consensus        96 ~v~v~G~~R~rI~~~~~~--------------------------------------------------------------  113 (252)
T 3ljc_A           96 KVLVEGLQRARISALSDN--------------------------------------------------------------  113 (252)
T ss_dssp             EEEEEEEEEEECSEEEEE--------------------------------------------------------------
T ss_pred             EEEEEEEEEEEEEEEEcC--------------------------------------------------------------
Confidence            999999999999998765                                                              


Q ss_pred             CCCCCceEEEEEeecCCCcCCcHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhccCCCCCCChHHHHHHHHHhcCCCH
Q psy17017        239 DEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEG  318 (442)
Q Consensus       239 ~~~~p~l~a~Ve~l~~~~~~~~~e~kAL~~eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l~~~~  318 (442)
                         +||+.|+|+.++++.. .+.+.+|+++.+++.|++|+.+++.++.++...+.+     ++||.+|||++|++++++.
T Consensus       114 ---~~~~~a~ve~l~d~~~-~~~e~~al~~~l~~~~~~~~~l~~~~~~e~~~~~~~-----~~dp~~Lad~ia~~l~l~~  184 (252)
T 3ljc_A          114 ---GEHFSAKAEYLESPTI-DEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNS-----IDDPARLADTIAAHMPLKL  184 (252)
T ss_dssp             ---TTEEEEECCCCCCCCS-CHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHTTS-----CCCHHHHHHHHHHTSCCCH
T ss_pred             ---CCcEEEEEEeecCCCC-CChHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHc-----cCCHHHHHHHHHHhCCCCH
Confidence               3899999999976543 356889999999999999999999998888777776     8999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCC
Q psy17017        319 TEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGL  384 (442)
Q Consensus       319 ~ekQ~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~  384 (442)
                      ++||+|||+.|+.+||.+++.+|.+|+++++++++|+++|+++|+|+|||||||||||+||||||+
T Consensus       185 ~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe  250 (252)
T 3ljc_A          185 ADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGE  250 (252)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999999999994

PyMOL of 3ljc

>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}	Back alignment and structure

>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10	Back alignment and structure

>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		442
d1zboa1		197	Hypothetical protein BPP1347 {Bordetella parapertu	99.97
d2anea1		110	ATP-dependent protease La (Lon), N-terminal domain	99.86
d1svma_		362	Papillomavirus large T antigen helicase domain {Si	84.78

>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]}	Back information, alignment and structure

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: Hypothetical protein BPP1347
species: Bordetella parapertussis [TaxId: 519]

Probab=99.97  E-value=2.4e-30  Score=236.30  Aligned_cols=189  Identities=13%  Similarity=0.090  Sum_probs=155.7

Q ss_pred             ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-ccCc---CCCccccccccceEEEEEEeecCCc-
Q psy17017         83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KVSL---VKDLSEVYSVGSFVHIREVLTLPDR-  157 (442)
Q Consensus        83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~~~---v~~~~dly~vGTla~I~~~~~l~d~-  157 (442)
                      +||+||| ++|+|||+++||+||+++|++|+++|++.++++++++. +.+.   ..+.+++|+|||+|+|.++..+||| 
T Consensus         2 elPlfpL-~~VlfP~~~~PL~Ife~ry~~~i~~~l~~~~~~~~v~~~~~~~~~~~~~~~~l~~vGt~~~I~~~~~~~dG~   80 (197)
T d1zboa1           2 EIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPAL   80 (197)
T ss_dssp             EEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTTC
T ss_pred             CCCEEeC-CCccCCCcceeeEeCchHHHHHHHHHHhcCCCeeeeccccccccccccccccccceeEEEEEeeecccCCCc
Confidence            5999999 69999999999999999999999999998877654444 2221   2367899999999999999999998 


Q ss_pred             eEEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCCCC
Q psy17017        158 LRLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPG  237 (442)
Q Consensus       158 ~rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (442)
                      ++|+++|.+||||.++....                                                            
T Consensus        81 ~~i~v~G~~R~~i~~~~~~~------------------------------------------------------------  100 (197)
T d1zboa1          81 LELACTGTGRFRLHACTQGK------------------------------------------------------------  100 (197)
T ss_dssp             EEEEEEEEEEEEEEEEEECG------------------------------------------------------------
T ss_pred             eeEeeeeccceeeeeeeecc------------------------------------------------------------
Confidence            99999999999999987653                                                            


Q ss_pred             CCCCCCceEEEEEeecCCCc-CCcHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhccCCCCCCChHHHHHHHHHhcCC
Q psy17017        238 PDEPKPVTMVEVVNLKHEKF-KQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGA  316 (442)
Q Consensus       238 ~~~~~p~l~a~Ve~l~~~~~-~~~~e~kAL~~eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l~~  316 (442)
                          .+|+.|+++.++++.. +...+..++...+.+.+..+...++..........     ..++||.+|||++|+++++
T Consensus       101 ----~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~la~~l~l  171 (197)
T d1zboa1         101 ----YGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAP-----FRLDDCGWVADRWAEMLSL  171 (197)
T ss_dssp             ----GGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCSC-----CCTTCHHHHHHHHHHHSCC
T ss_pred             ----CceEEEEEEeccccCCccCcHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhh-----hccCCHHHHHHHHHHhCCC
Confidence                2788899998876543 34567788889999999998887655433322222     2389999999999999999


Q ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17017        317 EGTEQQAILEEMDIPKRLMLSLSLLK  342 (442)
Q Consensus       317 ~~~ekQ~lLe~~di~~RL~~~l~lLk  342 (442)
                      +.++||+|||+ +..+||+++..+|.
T Consensus       172 ~~~~kQ~lLE~-~~~~RL~~l~~~L~  196 (197)
T d1zboa1         172 PPADKARLLLL-PPLDRLREIDAVLA  196 (197)
T ss_dssp             CHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCC-CHHHHHHHHHHHHc
Confidence            99999999986 66689999999885

PyMOL of d1zboa1

>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}	Back information, alignment and structure